RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17575
(832 letters)
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 773 bits (1999), Expect = 0.0
Identities = 348/792 (43%), Positives = 496/792 (62%), Gaps = 39/792 (4%)
Query: 66 ISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQS 125
+ FL +GL+E+ A+ + N +++ L I EA ++ + G+LLY +A+K + +
Sbjct: 9 LELFLKIGLDERTARNAIANNKVTSNLTAVIHEAG-VTNGCDKTVGNLLYTVATKYPANA 67
Query: 126 SIHLPLLVKYIVSKALDSTLRVDAALEYVLS-HVNAVNEKELEASCGVGVIVTSEDIEET 184
+H P L+ YIVS + + +++AA + S + + + E +CGVGV+V+ EDIE
Sbjct: 68 LVHRPTLLSYIVSSKIKTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAA 127
Query: 185 VSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADL 244
V++V E++K ++L++RYR N+G ++ +VR L WAD K +K +D ++ LLG KT AD
Sbjct: 128 VNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWADPKIVKKLIDKKLYELLGEKTAADN 187
Query: 245 APVPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFK-------SD 297
P K EK +K + + EE +N F +P ENFK SD
Sbjct: 188 EK-PVKKKKEKPAKVEEKKVAVAAAPPSEEELN-----PYSIFPQPEENFKVHTEVFFSD 241
Query: 298 GYVV-TEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFL 356
G V+ T ++L +H+K TGGKV TRFPPEPNG LHIGHAKA+ ++FG A G C+L
Sbjct: 242 GSVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYL 301
Query: 357 RYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQ 416
R+DDTNPE E++++ I+++V+W+G++P++IT++SDYF +LYE AV+LI++G AYV HQ
Sbjct: 302 RFDDTNPEAEKKEYIDHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQ 361
Query: 417 KSDEMKGF--NPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDP 471
+E+K + + SPWR+RP+EE++KLFE M+ GLI+EG+ATLRMK ++ D
Sbjct: 362 TPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDL 421
Query: 472 VAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD 531
+AYRIKF PH GD WCIYP+YDY HC+ DS+E+ITHSLCT EF++RR+SYYWL ++L
Sbjct: 422 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLG 481
Query: 532 IYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKF 591
+Y P WEY RLNV TV+SKRK+ +L+ E V+ WDDPRL TL LRRRG P AIN F
Sbjct: 482 LYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAF 541
Query: 592 CARMGVTGAQ-AVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFD---QLNVDTKF 647
C +G+T + +++ + LE +RE LN TAPR MVV+ PL + I N + + +D K
Sbjct: 542 CRGIGITRSDNSLIRMDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAK- 600
Query: 648 TVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKV 707
PD ND + + F R +YIE+SDF++ K Y LAPG+ V LRYA + D V
Sbjct: 601 RWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKDYYGLAPGKSVLLRYAFPIKCTDVV 660
Query: 708 NTKCNGAITSIDVKATPVDVDNKPKAFIHWVA------RPISIEVRLYSTLFLHKNPEDT 761
N + I + P + KPK +HWVA P+ +EVRL+ LFL +NP +
Sbjct: 661 LADDNETVVEIRAEYDP-EKKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENPAEL 719
Query: 762 YQVPEGYLSDINPDS-LKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVN 820
E +L D+NP S +S YA K DRFQFER+G+F VD+DS K V N
Sbjct: 720 ----EDWLEDLNPQSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVDKDS-TPEKLVFN 774
Query: 821 LTVSLKEDSGKS 832
TV+LK+ GK
Sbjct: 775 RTVTLKDSYGKG 786
>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
Length = 554
Score = 661 bits (1708), Expect = 0.0
Identities = 248/536 (46%), Positives = 332/536 (61%), Gaps = 32/536 (5%)
Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
+V TRFPPEPNG LHIGHAK+I +NFG A + G C LR+DDTNPEKE++++ IK+
Sbjct: 28 TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKED 87
Query: 378 VQWLGYKP-YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK---------GFNPL 427
V+WLG+ ++ ++SDYF QLYE+AV+LIKKG AYV ++E++ G N
Sbjct: 88 VRWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKN-- 145
Query: 428 PSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRT 484
SP+R+R VEEN+ LFE M+ G EG A LR KI + +DPV YRI+ HHRT
Sbjct: 146 -SPYRDRSVEENLDLFERMRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRT 204
Query: 485 GDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRL 543
GD WCIYP YD+ HC+ D+IE ITHSLCT EF+ R Y W+ + L I P Q+E+ RL
Sbjct: 205 GDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRL 264
Query: 544 NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAV 603
N+ YTV+SKRK+ +L+EE V+ WDDPR+ T++ LRRRG+ PE+I +FC R+GVT +V
Sbjct: 265 NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSV 324
Query: 604 VSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDI 663
+ +MLE+ +RE LN+ APR M V+DPL L I N+ + V+ P+ P D G+ ++
Sbjct: 325 IDMSMLESCIREDLNENAPRAMAVLDPLKLVITNYPEGQVEE-LEAPNHPEDPEMGTREV 383
Query: 664 QFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI----- 718
F R +YIE+ DF K Y RL PG+ V LR A V++ ++V +G IT I
Sbjct: 384 PFSRELYIEREDFMEEPPKKYFRLVPGKEVRLRNAY-VIKCEEVVKDADGNITEIHCTYD 442
Query: 719 -DVKATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPD 775
D + K K IHWV A + EVRLY LF NP + +L +NPD
Sbjct: 443 PDTLSGNPADGRKVKGTIHWVSAAHAVPAEVRLYDRLFTVPNPAAG----KDFLDFLNPD 498
Query: 776 SLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
SL + G+ + KP DRFQFER G+F D+DS K V N TV L++ K
Sbjct: 499 SLVIKQGFVEPSLADAKPEDRFQFEREGYFCADKDSTPG-KLVFNRTVGLRDSWAK 553
>gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases [Protein synthesis, tRNA
aminoacylation].
Length = 522
Score = 537 bits (1385), Expect = 0.0
Identities = 238/531 (44%), Positives = 324/531 (61%), Gaps = 34/531 (6%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TRFPPEPNG LHIGHAK+I +NFGYA +NG C LR+DDTNP KE+ ++ IK V+
Sbjct: 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVE 60
Query: 380 WLGYKP-YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK---------GFNPLPS 429
WLG+K +I +SSDYF +LY +A +LIKKGLAYV +E++ G N S
Sbjct: 61 WLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKN---S 117
Query: 430 PWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGD 486
P+R+R +EEN+ LFE M++G EG+A LR KI + +DPVAYRIKF PHH+TG
Sbjct: 118 PYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGT 177
Query: 487 SWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNV 545
WCIYP YD+THC+ D++E+ITHSLCT EFQ R Y W+ + + I+ P Q+E+ RLN+
Sbjct: 178 KWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNL 237
Query: 546 NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVS 605
TV+SKRK+A+L+++ V WDDPR+ T++ LRRRG+ P +I +FC R+GVT +
Sbjct: 238 EGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIE 297
Query: 606 PNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNF-DQLNVDTKFTVPDFPNDATKGSHDIQ 664
LE+ +RE LN+ APR M VIDP+ + I N D+ + T+P+ PN G +
Sbjct: 298 VVRLESCIREDLNENAPRAMAVIDPVEVVIENLSDEYEL---ATIPNHPNTPEFGERQVP 354
Query: 665 FDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATP 724
F YI+++DF+ K Y+RL G+ V LR A V++ ++V G IT+I
Sbjct: 355 FTNEFYIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAAGKITTIFCTYDN 413
Query: 725 VDVDN------KPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDS 776
+ K K IHWV + E RLY LF NP P+ +LS INP+S
Sbjct: 414 KTLGKEPADGRKVKGVIHWVSASSKYPTETRLYDRLFKVPNP----GAPDDFLSVINPES 469
Query: 777 LKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
L + G+ + RFQFER G+F +D + K V N TVSLK+
Sbjct: 470 LVIKQGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTEKVVFNRTVSLKD 520
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 531 bits (1371), Expect = e-178
Identities = 226/541 (41%), Positives = 312/541 (57%), Gaps = 27/541 (4%)
Query: 311 EHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKF 370
E +Y +V TRFPPEPNG LHIGHAK+I +NFG A + G C LR DDTNPE E+ ++
Sbjct: 25 EAGRY--PRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEY 82
Query: 371 FTGIKDMVQWLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF----- 424
IKD V+WLG+ + ++SDYF ++Y +A +LIK GLAYV +E++
Sbjct: 83 VEAIKDDVRWLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVT 142
Query: 425 NP-LPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLP 480
P PSP+R+R VEEN+ LF M+ G +G LR KI + +DP+ YRI+
Sbjct: 143 EPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAH 202
Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC--PVQW 538
H+RTGD WCIYP YD+ H L D+IE +THS+CT EF++ R+ Y W+ + L + P Q+
Sbjct: 203 HYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWPPRPRQY 262
Query: 539 EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVT 598
E+ RL + YTV+SKRK+ +L+EE V+ WDDPR+ T+ RRRG PEAI F ++GV
Sbjct: 263 EFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVA 322
Query: 599 GAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATK 658
+ V +LE +R+ LN APRVM V+DPL + I N V+ +P +P+D K
Sbjct: 323 KTNSTVDIGVLEFAIRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEE-LDLPYWPHDVPK 381
Query: 659 -GSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITS 717
GS + F R +YIE+ DF KG++RL PG+ V LR A ++ D+V +GA+T
Sbjct: 382 EGSRKVPFTRELYIERDDFSEDPPKGFKRLTPGREVRLRGAY-IIRCDEVVRDADGAVTE 440
Query: 718 I-----DVKATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLS 770
+ A D K IHWV + EVRLY LF PE E +L
Sbjct: 441 LRCTYDPESAKGEDTGRKAAGVIHWVSAKHALPAEVRLYDRLFKVPQPE---AADEDFLE 497
Query: 771 DINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSG 830
+NPDSL+V+ G + R+QFER G+F D + V N ++LK+ G
Sbjct: 498 FLNPDSLRVAQGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDALVFNRIITLKDTWG 557
Query: 831 K 831
Sbjct: 558 A 558
>gnl|CDD|240418 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
Length = 574
Score = 491 bits (1266), Expect = e-165
Identities = 243/545 (44%), Positives = 336/545 (61%), Gaps = 35/545 (6%)
Query: 305 THDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE 364
T +LL +H TGGK RFPPEPNG LHIGHAK++N+NFG A AH G C+LRYDDTNPE
Sbjct: 37 TPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPE 96
Query: 365 KEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF 424
EE+ + I +MV+W+G+KP +T SSDYF QL+E+AV+LIK G AYV H DE+K
Sbjct: 97 TEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQ 156
Query: 425 --NPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFL 479
SPWR R VEEN+ LFE M+ G EGEATLR+K ++ +D +AYR+K++
Sbjct: 157 REQREDSPWRNRSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYV 216
Query: 480 PHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWE 539
H D WCIYP+YD+THCL DS+E I +SLCT EF++RR SY+WL L+++ P WE
Sbjct: 217 EHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPHVWE 276
Query: 540 YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG 599
+ RLNV +++SKRKI L+ + IV +DDPRL TL +RRRG+ P AIN+FC +G+T
Sbjct: 277 FSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITR 336
Query: 600 AQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKG 659
+ V+ +MLE +RE L++ R ++VIDP+ + + N+ + +F P+ P G
Sbjct: 337 SMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKG---EREFECPNHPRKPELG 393
Query: 660 SHDIQFDRTIYIEKSDFKV-IQEKGYRRLAPG-QGVGLRYAGLVLEVDKVNTKCNGAITS 717
S + F T Y+++SDF+ + LAPG + VGL+Y+G N C G
Sbjct: 394 SRKVMFTDTFYVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSG--------NVVCKG--FE 443
Query: 718 IDVKATP----VDVD----NKPKAFIHWVARP--ISIEVRLYSTLFLHKNPEDTYQVPEG 767
+D P VD+D +KPK I WV+ +EVRLY+ L +D +
Sbjct: 444 VDAAGQPSVIHVDIDFERKDKPKTNISWVSATACTPVEVRLYNALL----KDDRAAIDPE 499
Query: 768 YLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
+L I+ DS VS GYA+ G K ++ Q ER G+F VD D+ +H V+N + L+E
Sbjct: 500 FLKFIDEDSEVVSHGYAEKGIENAKHFESVQAERFGYFVVDPDTRPDHL-VMNRVLGLRE 558
Query: 828 DSGKS 832
D K+
Sbjct: 559 DKEKA 563
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 391 bits (1007), Expect = e-130
Identities = 124/314 (39%), Positives = 171/314 (54%), Gaps = 13/314 (4%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
KVRTRF P P G LHIGHA+ N+ +A +NG LR+DDT+PE+E+ ++ I + +
Sbjct: 1 KVRTRFAPSPTGYLHIGHARTALFNYLFAKNYNGKFILRFDDTDPEREKPEYEESILEDL 60
Query: 379 QWLGYKPY-QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP----LPSPWRE 433
+WLG K + + SD F Y++A +LI+KGLAYVC +E++ L SP R
Sbjct: 61 KWLGIKWDEKPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERP 120
Query: 434 RPVEENVKLFEAM-KNGLIDEGEATLRMKITLEEGKQ--DPVAYRIKFLP---HHRTGDS 487
R EE ++LFE + G + G+ATLR KI +E D V RIKF P H RTG
Sbjct: 121 RYDEECLRLFEEEMRKGEAEGGKATLRFKIPMESPYVMRDLVRGRIKFEPSALHDRTGLK 180
Query: 488 WCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPV-QWEYGRLNVN 546
W YPTYD+ + D+I ITH L +E W+ AL P EY RLN++
Sbjct: 181 WDGYPTYDFAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIHEYLRLNLD 240
Query: 547 YTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAV-VS 605
T +SKRK++ + + V W DP L LRRRG+ PE I +F R + + +
Sbjct: 241 GTKLSKRKLSLSVFISQVKGWGDPPEALLNFLRRRGWTPEGIREFFTREELIKSFDLNRV 300
Query: 606 PNMLEAVVREVLND 619
LEA R+ L+
Sbjct: 301 SKSLEAFDRKKLDW 314
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 318 bits (817), Expect = e-100
Identities = 150/508 (29%), Positives = 209/508 (41%), Gaps = 62/508 (12%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
VRTRF P P G LHIGHA+ +N+ YA + G LR +DT+PE+E + I + +
Sbjct: 9 GVRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDL 68
Query: 379 QWLGYKPYQ-ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDE--------MKGFNPLPS 429
+WLG + + S+ F YE+A KLI+KG AYVC+ +E P PS
Sbjct: 69 EWLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPS 128
Query: 430 PWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQ---DPVAYRIKFLP-HHR-T 484
R+ E N+ LFE M + L + G A +R+KI + D V RI F P H
Sbjct: 129 YDRD---ERNLTLFEKMAD-LGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFV 184
Query: 485 GDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN 544
+ YPTY++ + D + ITH L ++ WL AL PV L
Sbjct: 185 ILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLL 244
Query: 545 VNYTVV-SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAV 603
SKRK A I E V W P L L AL RG+PPEAI F G+
Sbjct: 245 NEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLT 304
Query: 604 VSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDI 663
+ A R+ L+ PR M V DP+ + I N + T+P P +
Sbjct: 305 IVSKSPAAFDRKKLDWLNPRYMRV-DPVEVVIENLKPHLEEEGATLPLNPEMGERVVPLT 363
Query: 664 QFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKAT 723
+ + I IE+ DF + V L+ V+ + + G ITS
Sbjct: 364 K-ETLIEIERLDF--------FFFEDKEEVRLKRLANVIVAEVLEKDAEGLITS------ 408
Query: 724 PVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDS-LKVSIG 782
D + IHWV + LF K P + P + ++ G
Sbjct: 409 ----DWTKENIIHWVKA--------VARLFGVKGP------------KLFPPLRVALTGG 444
Query: 783 YADSGFVGVKPYDR--FQFERVGFFTVD 808
Y + QFER+G+ D
Sbjct: 445 YVEPELADTIELLGKEVQFERLGYALAD 472
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 300 bits (771), Expect = 2e-92
Identities = 156/573 (27%), Positives = 248/573 (43%), Gaps = 76/573 (13%)
Query: 248 PKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTHD 307
P+++ K+ E E +LMK+L + K G
Sbjct: 34 PELRKKAKEVLEAVEAAVEEVNSLSPEE--QKELMKRLGLDIKKKEKKRKG--------- 82
Query: 308 LLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEE 367
LRE G+V RF P P+G LHIGHA+A +N YA ++G +R+DDT+P + +
Sbjct: 83 -LRELPGAKMGEVVMRFAPNPSGPLHIGHARAAILNHEYAKKYDGKLIIRFDDTDPRRVD 141
Query: 368 EKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF--N 425
+ + I + ++WLG K ++ + SD Y++ KLI+ G AYVC + +E +
Sbjct: 142 PEAYDMILEDLEWLGVKWDEVVYQSDRIETYYDYTRKLIEMGKAYVCDCRPEEFRELRNR 201
Query: 426 PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHH 482
R+R VEEN++ +E M G + G +R+K L+ +D V +RI PH
Sbjct: 202 GEACHCRDRSVEENLERWEEMLEGKEEGGSVVVRVKTDLKHKNPAIRDWVIFRIVKTPHP 261
Query: 483 RTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEF--QSRRSSYYWLCNALDIYCPVQWEY 540
RTGD + +YPT D++ + D + +TH L K+ R+ Y + + P +
Sbjct: 262 RTGDKYRVYPTMDFSVAIDDHLLGVTHVLRGKDHIDNRRKQEYIYRYFGWEP--PEFIHW 319
Query: 541 GRLNVN-YTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG 599
GRL ++ +S K I + WDDPRL TL A+RRRG PEAI KF +GV
Sbjct: 320 GRLKIDDVRALSTSSARKGILRGEYSGWDDPRLPTLRAIRRRGIRPEAIRKFMLSIGVKI 379
Query: 600 AQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKG 659
+S + A+ R+++++ A R + +P+ + IV + + PD P G
Sbjct: 380 NDVTMSWKNIYALNRKIIDEEARRYFFIWNPVKIEIVGLPEPKRVERPLHPDHPE---IG 436
Query: 660 SHDIQFDRTIYIEKSDFKVIQEKGYRRLAPG----QGVGLRYAGLVLEVDKVNTKCNGAI 715
+ IY+ K D + E R + LRY LE +
Sbjct: 437 ERVLILRGEIYVPKDDLEEGVEP-VRLMDAVNVIYSKKELRYHSEGLEGARKLG------ 489
Query: 716 TSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPD 775
K+ IHW+ +++V++ I PD
Sbjct: 490 ----------------KSIIHWLPAKDAVKVKV-----------------------IMPD 510
Query: 776 SLKVSIGYADSGFVGVKPYDRFQFERVGFFTVD 808
+ V G ++ ++ D QFER GF +D
Sbjct: 511 ASIVE-GVIEADASELEVGDVVQFERFGFARLD 542
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic
core domain. These enzymes attach Gln to the appropriate
tRNA. Like other class I tRNA synthetases, they
aminoacylate the 2'-OH of the nucleotide at the 3' end
of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. GlnRS contains
the characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 238
Score = 279 bits (717), Expect = 1e-88
Identities = 89/143 (62%), Positives = 108/143 (75%)
Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEY 540
HHRTGD WCIYPTYD+ H + DSIE ITHSLCT EF+ RR SYYWLC+AL +Y P QWE+
Sbjct: 96 HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEF 155
Query: 541 GRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA 600
RLN+ YTV+SKRK+ +L++E V+ WDDPRL TL LRRRG PEAI +F R GV+ A
Sbjct: 156 SRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKA 215
Query: 601 QAVVSPNMLEAVVREVLNDTAPR 623
+ + + LEA VR+ LN TAPR
Sbjct: 216 DSTIDWDKLEACVRKDLNPTAPR 238
Score = 204 bits (521), Expect = 2e-60
Identities = 68/104 (65%), Positives = 83/104 (79%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
KV TRFPPEPNG LHIGHAKAI +NFGYA + G C LR+DDTNPEKEEE++ IK+ V
Sbjct: 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDV 60
Query: 379 QWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK 422
+WLG KPY++T++SDYF QLYE+A +LIKKG AYV H+ D+
Sbjct: 61 KWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYVHHRTGDKWC 104
>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional.
Length = 601
Score = 279 bits (714), Expect = 1e-83
Identities = 168/504 (33%), Positives = 253/504 (50%), Gaps = 26/504 (5%)
Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
GKV TRFPPE +G LHIGHAKA IN A + G R+DDTNP KE+E F I D
Sbjct: 51 GKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDD 110
Query: 378 VQWLGYKPYQI--THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG--FNPLPSPWRE 433
+ LG + + T+SSDY +YE A +LIKKGLAY +EM+ F+ +P+ +R+
Sbjct: 111 LATLGV-SWDVGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRD 169
Query: 434 RPVEENVKLFEAMKNGLIDEGEATLRMKITLE---EGKQDPVAYRIKFLPHHRTGDSWCI 490
VEE +L+ MK G + E LR KI+++ + +DPV YR+ PH R G +
Sbjct: 170 ISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKA 229
Query: 491 YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVV 550
YPTYD+ + DS+E +TH+L T E+ R YYW C+AL I P+ ++ RLN+ Y+V+
Sbjct: 230 YPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYSVM 289
Query: 551 SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLE 610
SKRK+ +L++ ++V+ WDDPR T+ AL RRG EA+ +F G++ + + L
Sbjct: 290 SKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLW 349
Query: 611 AVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIY 670
++L+ + PR VV + L + Q++++ G I+
Sbjct: 350 YFNTQILDPSVPRYTVVSNTLKVRCTVEGQIHLE-ACEKLLHKKVPDMGEKTYYKSDVIF 408
Query: 671 IEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNK 730
++ D +++E G V L G + + + IT D+ K
Sbjct: 409 LDAEDVALLKE--------GDEVTLMDWGNAYIKNIRRSGEDALITDADIVLHLEGDVKK 460
Query: 731 PKAFIHWVA---RPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDI-NPDSLKVSIGYADS 786
K + WV + +E+ Y L K P+ PE + DI P + Y +
Sbjct: 461 TKFKLTWVPESPKAEVMELNEYDHLLTKKKPD-----PEESIDDIIAPVTKYTQEVYGEE 515
Query: 787 GFVGVKPYDRFQFERVGFFTVDRD 810
+K D Q ER G++ VD
Sbjct: 516 ALSVLKKGDIIQLERRGYYIVDDV 539
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 274 bits (702), Expect = 3e-82
Identities = 158/516 (30%), Positives = 229/516 (44%), Gaps = 85/516 (16%)
Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE--KEEEKFFTGIK 375
GKV RF P P+G LH+GHA+A +N YA + G LR++DT+P + + + + I
Sbjct: 100 GKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMIL 159
Query: 376 DMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF--NPLPSPWRE 433
+ ++WLG K ++ SD YE+A KLI+ G AYVC +E K P P R+
Sbjct: 160 EDLKWLGVKWDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRD 219
Query: 434 RPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDP-----VAYRIKFLPHHRTGDSW 488
+ EEN++L+E M +G EGEA +R+K LE +P VA+RI PH R GD +
Sbjct: 220 KSPEENLELWEKMLDGEYKEGEAVVRVKTDLEH--PNPSVRDWVAFRIVKTPHPRVGDKY 277
Query: 489 CIYPTYDYTHCLCDSIEHITHSLCTKEFQS--RRSSYYWLCNALDIYCPVQWEY------ 540
++PTY++ + D + +TH L K+ + Y IY WEY
Sbjct: 278 RVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY--------IYDYFGWEYPETIHY 329
Query: 541 GRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA 600
GRL + V+S KI K IEE + WDDPRL TL ALRRRG PEAI + +GV
Sbjct: 330 GRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKET 389
Query: 601 QAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGS 660
A +S L A+ R++++ A R V DP+ L I + + +P P+ +G
Sbjct: 390 DATISWENLYAINRKLIDPIANRYFFVRDPVELEIEGAE----PLEAKIPLHPDRPERGE 445
Query: 661 HDIQFDRTIYIEKSDFKVIQE----KGY---RRLAPGQGVGLRYAGLVLEVDKVNTKCNG 713
+I +Y+ D + + RY LE +
Sbjct: 446 REIPVGGKVYVSSDDLEAEGKMVRLMDLFNVEITGVS-VDKARYHSDDLEEAR------- 497
Query: 714 AITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDIN 773
NK I WV S+ VR+ +
Sbjct: 498 --------------KNKAP-IIQWVPEDESVPVRV-----------------------LK 519
Query: 774 PDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDR 809
PD + G A+ ++ D QFER GF +D
Sbjct: 520 PDGGDIE-GLAEPDVADLEVDDIVQFERFGFVRIDS 554
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 257 bits (659), Expect = 1e-74
Identities = 157/522 (30%), Positives = 253/522 (48%), Gaps = 45/522 (8%)
Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
GKV TRFPPEP+G LHIGHAKA +N +A + G +R+DDTNP KE ++F I
Sbjct: 212 GKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKD 271
Query: 378 VQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG--FNPLPSPWRERP 435
++ LG K +T++SDYF QL E A KLIK+G AYV ++M+ + + S R
Sbjct: 272 IETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNS 331
Query: 436 VEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDSWCIYP 492
VEEN++L++ M G + +R K+ +++ +DPV YR PHHR G + +YP
Sbjct: 332 VEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYP 391
Query: 493 TYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQ-WEYGRLNVNYTVVS 551
TYD+ D++E +TH+L + E+ R + YY + + + V WE+ RLN YT++S
Sbjct: 392 TYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLR-KVHIWEFSRLNFVYTLLS 450
Query: 552 KRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA 611
KRK+ ++ V WDDPR T+ + RRG EA+ +F G + ++ + L
Sbjct: 451 KRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWT 510
Query: 612 VVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTK---FTVPDFPNDATKGSHDIQFDRT 668
+ +++++ PR V+ V + +P G F
Sbjct: 511 INKKIIDPVCPRHTAVLKE---GRVLLTLTDGPETPFVRIIPRHKKYEGAGKKATTFTNR 567
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI--------DV 720
I+++ +D + I E G+ V L G + + ++ GA+T++ V
Sbjct: 568 IWLDYADAEAISE--------GEEVTLMDWGNAI-IKEITKDEGGAVTALSGELHLEGSV 618
Query: 721 KATPVDVDNKPKAFIHWVAR-PISIEVRL--YSTLFLHKNPEDTYQVPEGYLSDINPDSL 777
K T K + W+ + + L + L K E+ + +L +NP +
Sbjct: 619 KTT--------KLKLTWLPDTNELVPLSLVEFDYLITKKKLEED----DNFLDVLNPCTK 666
Query: 778 KVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVV 819
K + DS +K + Q ER G++ D + KP+V
Sbjct: 667 KETAALGDSNMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIV 708
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
Length = 523
Score = 248 bits (634), Expect = 4e-73
Identities = 165/516 (31%), Positives = 259/516 (50%), Gaps = 30/516 (5%)
Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
G++ TRFPPEP+G LHIGHAKA +N YA + G LR+DDTNP KE+ +F I +
Sbjct: 10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIED 69
Query: 378 VQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG--FNPLPSPWRERP 435
+ + KP ++ +SDYF + +A+ LI++GLAY+ +EMK + S R +
Sbjct: 70 LGKIEIKPDSVSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQS 129
Query: 436 VEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDSWCIYP 492
EE +++F+ M +G + G LR KI ++ +DPV +R PHHR+G ++ YP
Sbjct: 130 PEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYP 189
Query: 493 TYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSK 552
TYD + DSIE +TH+L T E+ R + ++W+ AL + P + R+N TV+SK
Sbjct: 190 TYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTVLSK 249
Query: 553 RKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV 612
RK+ ++ V WDD R T+ + RRG +A+ F G + + A
Sbjct: 250 RKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAE 309
Query: 613 VREVLNDTAPRVMVV--IDPLPLHIVNFDQLNVDTKFTVPDF-PNDATKGSHDIQFDRTI 669
++ ++ A R M + D L + N D+ D F+ D P D G ++ +
Sbjct: 310 NKKEIDKRAKRFMAIDKADHTALTVTNADE-EADFAFSETDCHPKDPGFGKRAMRICDEV 368
Query: 670 YIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGA-ITSIDVKATPVDVD 728
+EK+D + IQ G+ + L G V+E+ K++ G I D KA
Sbjct: 369 LLEKADTEDIQ--------LGEDIVLLRWG-VIEISKIDGDLEGHFIPDGDFKAA----- 414
Query: 729 NKPKAFIHWVAR-PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSG 787
K I W+A +I V L F + ++ + + + INPD+L + D+G
Sbjct: 415 ---KKKISWIADVSDNIPVVLSE--FDNLIIKEKLEEDDKFEDFINPDTLAETDVIGDAG 469
Query: 788 FVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTV 823
+K +D Q ER GF+ VDR KP++ +
Sbjct: 470 LKTLKEHDIIQLERRGFYRVDRPYMGEEKPLILFMI 505
>gnl|CDD|218149 pfam04558, tRNA_synt_1c_R1, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 1. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 164
Score = 174 bits (443), Expect = 2e-50
Identities = 74/163 (45%), Positives = 110/163 (67%), Gaps = 3/163 (1%)
Query: 62 ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKI 121
+ ++ F +GL+EKKAKETLKN+ +S L I EA S + G+LLY+LA+K+
Sbjct: 3 VEELLKLFSKIGLDEKKAKETLKNKKVSASLLAIIAEAGATSGCDKKT-GALLYNLATKL 61
Query: 122 KSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSED 180
K H PL+V YIV+ L +TL+VDAAL+Y+ ++ A + E E +CGVGV+VT ED
Sbjct: 62 KGNEVPHRPLIVSYIVNGKLKTTLQVDAALKYLKANGSEAFDVAEFEEACGVGVVVTPED 121
Query: 181 IEETVSKVVEKHKAELLDKRYR-YNLGLVMQEVRTLLKWADGK 222
+E V+ +E++K E+L+KRY+ +N+GL++ + R LKWAD K
Sbjct: 122 VERAVADYIEENKEEILEKRYKLFNVGLLLVKARPELKWADPK 164
>gnl|CDD|217810 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q),
anti-codon binding domain. Other tRNA synthetase
sub-families are too dissimilar to be included. This
family includes only glutamyl and glutaminyl tRNA
synthetases. In some organisms, a single glutamyl-tRNA
synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 174
Score = 165 bits (421), Expect = 2e-47
Identities = 66/193 (34%), Positives = 94/193 (48%), Gaps = 24/193 (12%)
Query: 621 APRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQ 680
APR M V+DP+ + I N+ + + VP+ P + G+ + F R IYIE+ DFK
Sbjct: 1 APRYMAVLDPVKVVIENYPEGEEEE-AEVPNHPKNPELGTRKVPFSREIYIEREDFK--- 56
Query: 681 EKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATP--VDVDNKPKAFIHWV 738
RL PG+ V L A ++V +V +G +T + + K K IHWV
Sbjct: 57 -----RLKPGEEVRLMGAY-NIKVTEVVKDEDGNVTELHCTYDGDSLGGARKVKGIIHWV 110
Query: 739 A--RPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSI-GYADSGFVGVKPYD 795
+ + EVRLY LF ++ D +NPDSLKV G A+ +K D
Sbjct: 111 SADDAVPAEVRLYDRLFKDEDDFDFL---------LNPDSLKVITEGLAEPALANLKVGD 161
Query: 796 RFQFERVGFFTVD 808
QFER+G+F VD
Sbjct: 162 IVQFERIGYFRVD 174
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and
glutaminyl-tRNA synthetase. Glutamyl-tRNA
synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Glu or Gln,
respectively, to the appropriate tRNA. Like other class
I tRNA synthetases, they aminoacylate the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. These enzymes function as monomers. Archaea,
cellular organelles, and some bacteria lack GlnRS. In
these cases, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme. The discriminating form of GluRS
differs from GlnRS and the non-discriminating form of
GluRS in their C-terminal anti-codon binding domains.
Length = 230
Score = 104 bits (260), Expect = 5e-25
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
V TRF P P G LHIGHA+ NF +A + G LR +DT+PE+ ++ I + +
Sbjct: 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDL 60
Query: 379 QWLGYK----PYQITHSSDYFHQLYEWAVKLIKKG 409
+WLG PY SD F +A +LIKKG
Sbjct: 61 KWLGLDWDEGPY---RQSDRFDLYRAYAEELIKKG 92
Score = 94.8 bits (236), Expect = 7e-22
Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 18/154 (11%)
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNY-T 548
YP Y++ H + D++ ITH L ++ WL AL P + + RL + T
Sbjct: 93 GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGT 152
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
+SKRK+ TL ALRRRG+ PEA+ + A +G + +
Sbjct: 153 KLSKRKLNT----------------TLRALRRRGYLPEALRNYLALIGWSKPDGHELFTL 196
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLN 642
E + + D L +N + +
Sbjct: 197 EEMIAAFSVERVNSA-DATFDWAKLEWLNREYIR 229
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of
non-discriminating glutamyl-tRNA synthetase.
Non-discriminating Glutamyl-tRNA synthetase (GluRS)
cataytic core domain. These enzymes attach Glu to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. It contains the
characteristic class I HIGH and KMSKS motifs, which are
involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 240
Score = 100 bits (252), Expect = 8e-24
Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQS--RRSSYYWLCNALDIYCPVQW 538
H RTG + ++PT ++ + D + +TH L K+ + Y + + P
Sbjct: 98 HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEY--PETI 155
Query: 539 EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVT 598
+GRL + +S KI K IE WDDPRL TL ALRRRG PEAI F +GV
Sbjct: 156 HWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVK 215
Query: 599 GAQAVVSPNMLEAVVREVLNDTAPR 623
A +S L A+ R++++ A R
Sbjct: 216 QTDATISWENLYAINRKLIDPRANR 240
Score = 92.4 bits (230), Expect = 6e-21
Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE--KEEEKFFTGIKD 376
KV RF P PNG LH+GHA+A +N YA + G LR+DDT+P + + + + I +
Sbjct: 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPE 60
Query: 377 MVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYV 413
++WLG K ++ +SD YE+A KLI+ G AYV
Sbjct: 61 DLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGAYV 97
>gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family.
The glutamyl-tRNA synthetases of the eukaryotic cytosol
and of the Archaea are more similar to glutaminyl-tRNA
synthetases than to bacterial glutamyl-tRNA synthetases.
This model models just the bacterial and mitochondrial
forms of the enzyme. In many species, the charging of
tRNA(gln) proceeds first through misacylation with Glu
and then transamidation. For this reason, glutamyl-tRNA
synthetases may act on both tRNA(gln) and tRNA(glu).
This model is highly specific. Proteins with positive
scores below the trusted cutoff may be fragments rather
than full-length sequences [Protein synthesis, tRNA
aminoacylation].
Length = 470
Score = 85.1 bits (211), Expect = 3e-17
Identities = 75/308 (24%), Positives = 120/308 (38%), Gaps = 66/308 (21%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
KVRTRF P P G LHIG A+ N+ +A G LR +DT+ E+ E+ I + +
Sbjct: 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFLLRIEDTDLERNIEEAEEAILEGL 60
Query: 379 QWLG----YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRER 434
+WLG PY + D + + + +L+++GLAY C+ + ++ R R
Sbjct: 61 KWLGISWDEGPYYQSQRLDIYKKYAK---ELLEEGLAYRCYCSKERLE---------RLR 108
Query: 435 PVEENVKLF------------EAMKNGLIDEGEATLRMKITLEE--GKQDPVAYRIKFLP 480
++ K E ++N L +R KI E D V I F
Sbjct: 109 EEQKANKETPRYDRHCRNLHNEEIENALAKGIPPVVRFKIPQEGVVSFNDQVRGEITFQN 168
Query: 481 HH-------RTGDSWCIYPTYDYTHCLCDSIEH-ITHSLCTKEFQSRRSSYYWLCNALDI 532
++ S PTY++ + D ITH + ++ S + AL
Sbjct: 169 SELDDFVILKSDGS----PTYNFA-VVVDDYLMKITHVIRGEDHISNTPKQILIYKALGW 223
Query: 533 YCPVQWEYGRLNVNYTVV----SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAI 588
PV + L + SKR A I + + +G+ PEA+
Sbjct: 224 KIPV---FAHLPMILGEDGKKLSKRDGATSIMQ----------------FKEQGYLPEAL 264
Query: 589 NKFCARMG 596
+ A +G
Sbjct: 265 INYLALLG 272
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 82.2 bits (204), Expect = 2e-16
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
V TRF P P G LH+G+A+ +N+ YA H G LR DDT+ E+ ++++ I + +
Sbjct: 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDL 61
Query: 379 QWLGYKPYQITHSSDYFHQLYEWAV-KLIKKGLAYVCHQKSDE 420
+WLG + SD F Y+ A KL G Y C++ +E
Sbjct: 62 KWLGINWDRTFRQSDRF-DRYDEAAEKLKAAGRLYPCYETPEE 103
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 72.0 bits (177), Expect = 1e-15
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 23/97 (23%)
Query: 224 IKSEVDVQVLNLLGPKTEADLAPVPKVK--------VNEKKSKPKSNETQENGFEFVEEN 275
K EVD+Q+L LLGPKTEADL K K K+K + E G F+E
Sbjct: 2 FKPEVDMQILELLGPKTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG- 60
Query: 276 VNIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREH 312
+ + FHKPGEN+ QT+ LL++H
Sbjct: 61 -----FLGE-KFHKPGENY--------PQTYPLLKKH 83
>gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating
glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA
synthetase (GluRS) catalytic core domain . The
discriminating form of GluRS is only found in bacteria
and cellular organelles. GluRS is a monomer that
attaches Glu to the appropriate tRNA. Like other class
I tRNA synthetases, GluRS aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 239
Score = 65.7 bits (161), Expect = 9e-12
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
KVRTRF P P G LHIG A+ N+ +A H G LR +DT+ E+ + I + +
Sbjct: 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEAL 60
Query: 379 QWLG------------YKPYQITHSSDYFHQLYEWAVKLIKKG 409
+WLG Y PY+ S+ ++A KL++KG
Sbjct: 61 KWLGLDWDEGPDVGGPYGPYR---QSERLEIYRKYAEKLLEKG 100
>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 513
Score = 65.9 bits (160), Expect = 5e-11
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TRF P P G LHIG A+ N+ +A HNG LR +DT+ E+ ++ I ++
Sbjct: 5 VITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLK 64
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK 422
WLG ++ S + E A+KL++ G AY C + +E++
Sbjct: 65 WLGLDWNGEVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIE 108
>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase.
Length = 535
Score = 59.0 bits (143), Expect = 7e-09
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 24/125 (19%)
Query: 316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE---KEEEKFFT 372
GG VR RF P P G LH+G A+ N+ +A + G LR +DT+ KE E+
Sbjct: 42 KGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEE--A 99
Query: 373 GIKDMVQWLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDE 420
++D+ +WLG Y PY+ + + + Q A KL++ G Y C +E
Sbjct: 100 VLRDL-KWLGLDWDEGPDVGGEYGPYRQSERNAIYKQY---AEKLLESGHVYPCFCTDEE 155
Query: 421 ---MK 422
MK
Sbjct: 156 LEAMK 160
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 58.2 bits (142), Expect = 1e-08
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 39/173 (22%)
Query: 319 KVRTRFPPEPNGILHIGHAK-AININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
KVRTRF P P G LHIG A+ A+ N+ +A H G LR +DT+ E+ E+ I +
Sbjct: 4 KVRTRFAPSPTGYLHIGGARTAL-FNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEG 62
Query: 378 VQWLG-----------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVCHQKSDEM--- 421
++WLG Y PY Q S+ +Y E+A +L+++G AY C+ +E+
Sbjct: 63 LKWLGLDWDEGPDGGPYGPYRQ----SERLD-IYKEYAEQLLEEGKAYYCYCTPEELEAM 117
Query: 422 ------KGFNPL-PSPWRERPVEENVKLFEAMKNGLIDEGE-ATLRMKITLEE 466
G P R+ EE V A GE +R K+ E
Sbjct: 118 REEQRAAGEPPRYDGRCRDLTKEE-VAARLA-------AGEPPVIRFKVPDEG 162
>gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed.
Length = 299
Score = 52.9 bits (128), Expect = 2e-07
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 321 RTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQW 380
RF P P+G LH G A ++ A AH G LR +D +P +E I ++W
Sbjct: 7 IGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEW 66
Query: 381 LGYKP-----YQITHSSDYFHQLYEWAV-KLIKKGLAYVCH 415
LG YQ H Y A+ +L +GL Y C
Sbjct: 67 LGLHWDGPVLYQSQR-----HDAYRAALDRLRAQGLVYPCF 102
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 47.5 bits (113), Expect = 3e-06
Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 13/85 (15%)
Query: 322 TRFPPEPNGILHIGHAKAININFGYAAAHN-----GICFLRYDDTNPEKEEEKFFTGIKD 376
T PNG LHIGH + I A A+ C DD G
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGG-------LIGDPA 54
Query: 377 MVQWLGYKPYQITHSSDYFHQLYEW 401
+ K + + + E+
Sbjct: 55 NKKGENAKAFVE-RWIERIKEDVEY 78
>gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase;
Provisional.
Length = 433
Score = 44.6 bits (106), Expect = 2e-04
Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 33/198 (16%)
Query: 323 RFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE-----KEEEKFFTGIKDM 377
RF P P G +HIG+ +A N+ A N +R +DT+ E K++E I ++
Sbjct: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKE-----ILEI 57
Query: 378 VQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCH-------QKSDEMKGFNPLPSP 430
+ G ++ + S+ + A KL+ + A+ C K ++ K P
Sbjct: 58 LNLFGISWDKLVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEK---KP 114
Query: 431 WRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK-QDPVAYRIKFLPHHRTGDSWC 489
+R EN++ E + +R+K D + + F P DS+
Sbjct: 115 YRYDGTCENLEDDEVLNC----NKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEI--DSFV 168
Query: 490 IY-----PTYDYTHCLCD 502
I PTY++ C D
Sbjct: 169 ILRADKTPTYNFA-CAVD 185
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 37.1 bits (86), Expect = 0.005
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 322 TRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFT 372
RFP EP G LHIGHAK I G A C +R DD P K +
Sbjct: 2 ARFPGEP-GYLHIGHAKLICRAKGIA----DQCVVRIDDNPPVKVWQDPHE 47
>gnl|CDD|234370 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase.
This protein resembles a shortened glutamyl-tRNA
ligase, but its purpose is to modify tRNA(Asp) at a
queuosine position in the anticodon rather than to
charge a tRNA with its cognate amino acid [Protein
synthesis, tRNA and rRNA base modification].
Length = 271
Score = 37.1 bits (87), Expect = 0.025
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
R RF P P+G LH G A ++ A AH G +R +D +P +E I ++
Sbjct: 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLE 60
Query: 380 WLGYKP-----YQITHSSDYFHQLYEWAV-KLIKKGLAYVC 414
G YQ H LY+ A+ +L+ GLAY C
Sbjct: 61 AYGLHWDGEVVYQSQR-----HALYQAALDRLLAAGLAYPC 96
>gnl|CDD|113252 pfam04476, DUF556, Protein of unknown function (DUF556). Family of
uncharacterized, hypothetical prokaryotic proteins.
Length = 235
Score = 32.9 bits (75), Expect = 0.54
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 720 VKATPVDVDNKP-----KAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYL---SD 771
V AT DV KP A V+ I+V LY KN ++ +V + + D
Sbjct: 55 VSATVGDVPYKPGTVSLAALGAAVSGADYIKVGLYGV----KNYDEAVEVMKNVVRAVKD 110
Query: 772 INPDSLKVSIGYADSGFVG-VKPYD 795
+ + V+ GYAD+ +G V+P D
Sbjct: 111 FDSSKIVVAAGYADAYRIGAVEPLD 135
>gnl|CDD|188646 cd00959, DeoC, 2-deoxyribose-5-phosphate aldolase (DERA) of the
DeoC family. 2-deoxyribose-5-phosphate aldolase (DERA)
of the DeoC family. DERA belongs to the class I
aldolases and catalyzes a reversible aldol reaction
between acetaldehyde and glyceraldehyde 3-phosphate to
generate 2-deoxyribose 5-phosphate. DERA is unique in
catalyzing the aldol reaction between two aldehydes, and
its broad substrate specificity confers considerable
utility as a biocatalyst, offering an environmentally
benign alternative to chiral transition metal catalysis
of the asymmetric aldol reaction.
Length = 203
Score = 32.5 bits (75), Expect = 0.58
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 585 PEAINKFCA---RMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVID-PL 631
E I K C G A V+P + + RE L + +V VI PL
Sbjct: 16 EEDIRKLCDEAKEYGF--AAVCVNPCFV-PLAREALKGSGVKVCTVIGFPL 63
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase
inhibitor.
Length = 537
Score = 31.8 bits (72), Expect = 1.6
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 44 CQKVQNEPKVVSNIMTEI-------ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAI 96
CQ V+N VSNI E+ S++SA L L+E + L + ++ + +I
Sbjct: 41 CQFVENHSSCVSNIQAELKKSGPRTPHSVLSAALKATLDEAR----LAIDMITKFNALSI 96
Query: 97 EEASKISPHSLQDCGSLL----YHLASKIKSQSSIH 128
++ +++DC LL LA + + I
Sbjct: 97 SYREQV---AIEDCKELLDFSVSELAWSLLEMNKIR 129
>gnl|CDD|201134 pfam00290, Trp_syntA, Tryptophan synthase alpha chain.
Length = 258
Score = 31.1 bits (71), Expect = 2.4
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 593 ARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMV 626
+R GVTGA+ + L+ +V + T V V
Sbjct: 170 SRAGVTGARNAFNAQ-LDELVERLKKYTNVPVAV 202
>gnl|CDD|168348 PRK06015, PRK06015,
keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase; Provisional.
Length = 201
Score = 30.2 bits (68), Expect = 3.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 139 KALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVS 186
A++ TLR AAL+ + AV + EA G G I+ ++ E+
Sbjct: 31 PAIEITLRTPAALD----AIRAVAAEVEEAIVGAGTILNAKQFEDAAK 74
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 30.6 bits (70), Expect = 3.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 325 PPEPNGILHIGHA 337
PNG HIGHA
Sbjct: 9 IYYPNGKPHIGHA 21
>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase.
Length = 1050
Score = 30.9 bits (70), Expect = 3.9
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
Query: 421 MKGFNPLPSPWRERPVE---ENVKLFEAMKNGLIDEGEATLRMKITL 464
M+GF PW + PVE ENV+ AMK L+D+ R K TL
Sbjct: 249 MRGFQYELCPWGKHPVETNDENVQE-RAMK--LLDQ----YRKKSTL 288
>gnl|CDD|176263 cd08049, TAF8, TATA Binding Protein (TBP) Associated Factor 8.
The TATA Binding Protein (TBP) Associated Factor 8
(TAF8) is one of several TAFs that bind TBP, and is
involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID,
TFIIE, TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryotes. TFIID plays an important role in the
recognition of promoter DNA and the assembly of the
preinitiation complex. The TFIID complex is composed of
the TBP and at least 13 TAFs. TAFs from various species
were originally named by their predicted molecular
weight or their electrophoretic mobility in
polyacrylamide gels. A new, unified nomenclature for
the pol II TAFs has been suggested to show the
relationship between TAF orthologs and paralogs.
Several hypotheses are proposed for TAFs' functions,
such as serving as activator-binding sites, involvement
in the core-promoter recognition, or a role in the
essential catalytic activity of the complex. The mouse
ortholog of TAF8 is called taube nuss protein (TBN),
and is required for early embryonic development. TBN
mutant mice exhibit disturbances in the balance between
cell death and cell survival in the early embryo. TAF8
plays a role in the differentiation of preadipocyte
fibroblasts to adipocytes; it is also required for the
integration of TAF10 into the TAF complex. In yeast and
human cells, TAFs have been found as components of
other complexes besides TFIID. TAF8 is also a
component of a small TAF complex (SMAT), which contains
TAF8, TAF10 and SUPT7L. Several TAFs interact via
histone-fold motifs. The histone fold (HFD) is the
interaction motif involved in heterodimerization of the
core histones and their assembly into nucleosome
octamer. TAF8 contains an H4 related histone fold
motif, and interacts with several subunits of TFIID,
including TBP and the histone-fold protein TAF10.
Currently, five HF-containing TAF pairs have been
described or suggested to exist in TFIID: TAF6-TAF9,
TAF4-TAF12, TAF11-TAF13, TAF8-TAF10 and TAF3-TAF10.
Length = 54
Score = 27.6 bits (62), Expect = 4.0
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 15 PEPFCHAYQYIPIHMPGSQDGKPLDNLLFCQKVQNE 50
P+P H Y+ P + D K L L Q+ E
Sbjct: 11 PDP--HTYKRTPTYSERETDPKKLREELASQRRLAE 44
>gnl|CDD|212461 cd00222, CollagenBindB, Repeat unit of collagen-binding protein
domain B. The collagen-binding protein mediates
bacterial adherence to collagen; the primary sequence
has a non-repetitive, collagen-binding A region,
followed by instances of this B region repetitive unit.
The B region has one to four 23 kDa repeat units
(B1-B4), which have been suggested to serve as 'stalks'
that project the A region from the bacterial surface and
thus facilitate bacterial adherence to collagen. Each B
repeat unit has two highly similar domains (D1 and D2)
placed side-by-side; both D1 and D2 are included in this
model. They exhibit a unique inverse IgG-like domain
fold.
Length = 92
Score = 28.4 bits (64), Expect = 4.0
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 716 TSIDVKATPVDVDNKPKAFIHWVARPISIEVRLY 749
T I V T D DN+ RP SI V+L
Sbjct: 1 TDITVTKTWDDDDNQDGK------RPESITVQLL 28
>gnl|CDD|235205 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransferase subunit E;
Validated.
Length = 630
Score = 29.4 bits (67), Expect = 9.0
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 159 NAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYR---YNLGLVMQEVRTL 215
A E L+ ++ E++E+ + ++VE++ + +K +G VM E+R
Sbjct: 558 EAAEELGLKG-------LSEEEVEKIIDEIVEENIDFVKEKGMGAFGPLMGEVMAELR-- 608
Query: 216 LKWADGK 222
ADGK
Sbjct: 609 -GKADGK 614
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 29.1 bits (66), Expect = 9.9
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 431 WRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAY 474
WR P+EE + L + + ++T + G+ P+A
Sbjct: 34 WRAVPLEERKAIVTRAVELLAANTDE-IAEELTWQMGR--PIAQ 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.405
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,703,347
Number of extensions: 4244993
Number of successful extensions: 3919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3815
Number of HSP's successfully gapped: 60
Length of query: 832
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 727
Effective length of database: 6,280,432
Effective search space: 4565874064
Effective search space used: 4565874064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)