RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17575
(832 letters)
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 830 bits (2146), Expect = 0.0
Identities = 233/546 (42%), Positives = 323/546 (59%), Gaps = 27/546 (4%)
Query: 306 HDLLREHIK-YTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE 364
++ E + V TRFPPEPNG LHIGHAK+I +NFG A + G C LR+DDTNP
Sbjct: 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPV 71
Query: 365 KEEEKFFTGIKDMVQWLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK- 422
KE+ ++ IK+ V+WLG+ + +SSDYF QL+ +A++LI KGLAYV ++++
Sbjct: 72 KEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIRE 131
Query: 423 --GFNPLP---SPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAY 474
G P SP+R+R VEEN+ LFE M+ G +EG+A LR KI + +DPV Y
Sbjct: 132 YRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLY 191
Query: 475 RIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC 534
RIKF HH+TG+ WCIYP YD+THC+ D++E ITHSLCT EFQ R Y W+ + + I
Sbjct: 192 RIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251
Query: 535 -PVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCA 593
P Q+E+ RLN+ YTV+SKRK+ L+ + V WDDPR+ T++ LRRRG+ +I +FC
Sbjct: 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCK 311
Query: 594 RMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFP 653
R+GVT + LE+ +RE LN+ APR M VIDP+ L I N+ T+P+ P
Sbjct: 312 RIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHP 369
Query: 654 NDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNG 713
N GS + F I+I+++DF+ K Y+RL G+ V LR A V++ ++V G
Sbjct: 370 NKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAY-VIKAERVEKDAEG 428
Query: 714 AITSI------DVKATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVP 765
IT+I D + K K IHWV A + +E+RLY LF NP
Sbjct: 429 NITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGA----A 484
Query: 766 EGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSL 825
+ +LS INP+SL + G+A+ FQFER G+F +D + KPV N TV L
Sbjct: 485 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGL 544
Query: 826 KEDSGK 831
++ K
Sbjct: 545 RDTWAK 550
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 818 bits (2115), Expect = 0.0
Identities = 216/633 (34%), Positives = 308/633 (48%), Gaps = 72/633 (11%)
Query: 265 QENGFEFVEENVNIGDLMKKLPFHKPGENFKSD---GYVVTEQT-HDLLREHIKYTG-GK 319
Q+ G F + I M P G + + +V +++ ++ +
Sbjct: 7 QDRGAPFSGRSPRILTRMTDAPRPTAGADAPARPPAAPLVAPNFITEIIERDLEAGKYPR 66
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TRFPP+P+G H+GH A ++F A + G LR DDTNPE +++ I D ++
Sbjct: 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLK 126
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP------LPSPWR 432
WLG ++SDYF + Y +A +LI++G AYV +E+ PSP+R
Sbjct: 127 WLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYR 186
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDSWC 489
+R VEEN+ L MK G +GE LR KI L +DPV YRI PH RT D W
Sbjct: 187 DRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWH 246
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
IYP YD+ H L D+IE +THS+C+ EF R+ Y WL L+ P Q+E+GR + YT
Sbjct: 247 IYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEYT 306
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
+ SKRK+ +L++ V+ WDDPR+ TL A RR G PEA+ F A++GV+ V +
Sbjct: 307 ITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAV 366
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATK---------- 658
E VR+ LN APRVM V+DP+ + + N D + ++P +P+D +
Sbjct: 367 YENAVRDDLNHRAPRVMAVLDPVKVTLTNLDG---EKTLSLPYWPHDVVRDSPDGLVGMP 423
Query: 659 ---------GSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNT 709
D+ R +YIE+ DF KG++RL PG V LR AG ++ D T
Sbjct: 424 GGGRVAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTPGGTVRLRGAG-IIRADDFGT 482
Query: 710 KCNGAITSIDVKATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPED------- 760
G +T I +AT + D K IHWV R + E RLY LF +PE
Sbjct: 483 DEAGQVTHI--RATLLGEDAKAAGVIHWVSAERALPAEFRLYDRLFRVPHPEGENADVED 540
Query: 761 -----------------TYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVG 803
T V +G++ + PDSL+V GY + G R+QFER G
Sbjct: 541 DSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFERQG 600
Query: 804 FFTVDRDSNINH-----KPVVNLTVSLKEDSGK 831
+F D V ++LK+ GK
Sbjct: 601 YFWRDPVELERVDSREDALVFGRIITLKDTWGK 633
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 645 bits (1667), Expect = 0.0
Identities = 142/612 (23%), Positives = 234/612 (38%), Gaps = 76/612 (12%)
Query: 209 MQEVR-TLLKWADGKYIKSEVDVQVLNLLGPKTEADLAPVPKVKVNEKKSKPKSNETQEN 267
M V + ++A +K ++G V NE + + + + +E
Sbjct: 1 MVPVEDLVYRYALLNAVKHRGRANPGAVMG-----------AVMSNEPELRKMAPQVKEA 49
Query: 268 GFEFVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPE 327
VE ++ ++ + G +Q + G+V RF P
Sbjct: 50 VEAAVERVNSLSPEEQQQEMERLGLEITER-----KQKKRKGLRELAGVKGEVVLRFAPN 104
Query: 328 PNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ 387
P+G LHIGHA+A +N YA ++G LR +DT+P + + + + I ++WLG + +
Sbjct: 105 PSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDE 164
Query: 388 ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF--NPLPSPWRERPVEENVKLFEA 445
SD YE+ KLI++G AYVC + +E + R EN++ +
Sbjct: 165 TVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWRE 224
Query: 446 MKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCD 502
M EG A +R+K L +D V+ RI H RTG + +YP +++ + D
Sbjct: 225 MFEM--KEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDD 282
Query: 503 SIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEEN 562
+ +TH L K+ + R +L L P YGRL ++ +S + I
Sbjct: 283 HLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAREGILRG 342
Query: 563 IVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAP 622
+ WDDPRL TL A+ RRG PEAI K +GV A + +S + + R +L + A
Sbjct: 343 EYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEAR 402
Query: 623 RVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEK 682
R DP+ L +V + P P+ G+ ++ +Y+ D E
Sbjct: 403 RYFFAADPVKLEVVGLPG---PVRVERPLHPDHPEIGNRVLELRGEVYLPGDDLG---EG 456
Query: 683 GYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWV--AR 740
R L A N +G + + + IHWV
Sbjct: 457 PLR---------LIDAV--------NVIYSGGELRYHSEGIE-EARELGASMIHWVPAES 498
Query: 741 PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFE 800
+ EV + + G ++ ++ D Q E
Sbjct: 499 ALEAEVIMPDASRVR--------------------------GVIEADASELEVDDVVQLE 532
Query: 801 RVGFFTVDRDSN 812
R GF +D
Sbjct: 533 RFGFARLDSAGP 544
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA
LIG amidotransferase, ligase; 2.30A {Saccharomyces
cerevisiae}
Length = 187
Score = 206 bits (526), Expect = 4e-62
Identities = 57/183 (31%), Positives = 101/183 (55%), Gaps = 2/183 (1%)
Query: 63 DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIK 122
+ + F VG +KK KE +KN+ +S L + I+E + + +L+++LAS +K
Sbjct: 5 EELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWN-KSTRALVHNLASFVK 63
Query: 123 SQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIE 182
L+V I++ L ++L+VDAA +YV ++ A + + + GVG+ +T + +
Sbjct: 64 GTDLPKSELIVNGIINGDLKTSLQVDAAFKYVKANGEASTKMGMNENSGVGIEITEDQVR 123
Query: 183 ETVSKVVEKHKAELLDKRYRYNLGLVMQ-EVRTLLKWADGKYIKSEVDVQVLNLLGPKTE 241
V + ++++K +L +RY+ G+ + LKWAD + K +D +VL LLGPK E
Sbjct: 124 NYVMQYIQENKERILTERYKLVPGIFADVKNLKELKWADPRSFKPIIDQEVLKLLGPKDE 183
Query: 242 ADL 244
DL
Sbjct: 184 RDL 186
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
structural genomics, unknown function; 1.50A
{Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Length = 298
Score = 68.3 bits (168), Expect = 1e-12
Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 12/130 (9%)
Query: 316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIK 375
T + RF P P+G LH G A ++ A A G +R +D +P +E I
Sbjct: 2 TDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETIL 61
Query: 376 DMVQWLGYKP-----YQITHSSDYFHQLY-EWAVKLIKKGLAYVCHQKSDEMKGFNPL-P 428
++ G +Q H Y E L ++GL+Y C ++ +
Sbjct: 62 RQLEHYGLHWDGDVLWQSQR-----HDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYD 116
Query: 429 SPWRERPVEE 438
R
Sbjct: 117 GHCRVLHHGP 126
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 66.0 bits (162), Expect = 2e-11
Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 78/314 (24%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TR P P G H+G A N+ +A + G +R +DT+ + I ++
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 380 WLG------------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVC---HQKSDEMK 422
WLG + PY Q S+ LY ++A +L+K+G AY ++ ++++
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQ----SERLP-LYQKYAEELLKRGWAYRAFETPEELEQIR 116
Query: 423 GFNPL-PSPWRERPVEENVKLFEAMKNGLIDEGE-ATLRMKITLEEGK---QDPVAYRIK 477
R P EE GE +R+K+ G +D + +
Sbjct: 117 KEKGGYDGRARNIPPEE--------AEERARRGEPHVIRLKVP-RPGTTEVKDELRGVVV 167
Query: 478 FLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNA--- 529
+ ++ + YPTY + + D + +T + +E WL +
Sbjct: 168 Y--DNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEE---------WLVSTPIH 216
Query: 530 LDIYCPVQWE---YGR----LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRG 582
+ +Y WE + N + T +SKRK ++ + G
Sbjct: 217 VLLYRAFGWEAPRFYHMPLLRNPDKTKISKRKSHTSLDW----------------YKAEG 260
Query: 583 FPPEAINKFCARMG 596
F PEA+ + MG
Sbjct: 261 FLPEALRNYLCLMG 274
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 65.7 bits (161), Expect = 3e-11
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 19/135 (14%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
VRTRF P P G +H+G+ ++ + +A G LR +DT+ E+ ++ I + +
Sbjct: 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGM 84
Query: 379 QWLGYKP-----YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEM---------KGF 424
WLG YQ + E ++ +KGL Y C+ ++E+ G
Sbjct: 85 AWLGLDYDEGPYYQ----MQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGE 140
Query: 425 NPL-PSPWRERPVEE 438
P WR P +
Sbjct: 141 KPRYDGTWRPEPGKV 155
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
ATP-binding, nucleotide-B; HET: GLU; 2.45A
{Synechococcus elongatus}
Length = 492
Score = 64.1 bits (157), Expect = 9e-11
Identities = 75/318 (23%), Positives = 114/318 (35%), Gaps = 82/318 (25%)
Query: 320 VRTRFPPEPNGILHIGHAK-AININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
VR R P P G LHIG A+ A+ N+ YA G LR +DT+ E+ ++ I + +
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAV-FNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGL 60
Query: 379 QWLGYK----PY-QITHSSDYFHQLY-EWAVKLIKKGLAYVCHQKSDEM---------KG 423
QWLG PY Q SD LY + L+ KGLAY C+ +E+ KG
Sbjct: 61 QWLGLTWDEGPYFQ----SDRLD-LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKG 115
Query: 424 FNPL-PSPWRERPVEENVKLFEAMKNGLIDEGE-ATLRMKITLEEGK---QDPVAYRIKF 478
P + R EE + G +R KI ++ + QD V R+ +
Sbjct: 116 QAPRYDNRHRHLTPEE--------QAAFEAAGRTPVIRFKIE-DDRQIEWQDLVRGRVSW 166
Query: 479 LPHHRTGDSWCI----------YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCN 528
G I YP Y+ + D IT + ++ + N
Sbjct: 167 -QGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGED---------HIGN 216
Query: 529 A---LDIYCPVQWE---YGR----LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTAL 578
+ +Y + + LN +SKR I +
Sbjct: 217 TPKQILLYEALGATPPNFAHTPLILNSTGQKLSKRDGVTSISD----------------F 260
Query: 579 RRRGFPPEAINKFCARMG 596
R G+ A+ + +G
Sbjct: 261 RAMGYLAPALANYMTLLG 278
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 2e-10
Identities = 69/509 (13%), Positives = 147/509 (28%), Gaps = 126/509 (24%)
Query: 365 KEEEKFFTGIKDMVQ------W-LGYKPYQITHS--SDYFHQLYEWAVKLIKKGLAYVCH 415
KEE KD V W L K ++ + Y++ + +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF----LMSPIKTEQR 103
Query: 416 QKSDEMKGF----NPL---PSPWRERPVEENVKLFEAMKNGLIDEGEATLR--MKITLE- 465
Q S + + + L + + V ++ + ++ L++ LR + ++
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLE-----LRPAKNVLIDG 157
Query: 466 ---EGKQ---DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLC-DSIEHITHSLC---TKE 515
GK V K W + +C +++ + L
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWL-----NLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 516 FQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTL 575
+ SR +I + L + L+ N+ +
Sbjct: 213 WTSRSDHSS------NIKLRIHSIQAELR-RLLKSKPYENCLLVLLNV---QN------- 255
Query: 576 TALRRRGFPPEAINKF---CARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLP 632
+A N F C ++ +T V+ + A + D + +
Sbjct: 256 ---------AKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 633 LHIVNFDQLNVDTKFTVPDFPNDATKGS-------------HDIQFDRTIYIEKSDFKVI 679
L ++ + L+ + D P + + +D ++ I
Sbjct: 306 L-LLKY--LDCRPQ----DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 680 QEKGYRRLAPGQGVGLR--YAGL------------VLEV--DKVNTKCNGAITSIDVKAT 723
E L P + R + L +L + V + + K +
Sbjct: 359 IESSLNVLEPAE---YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 724 PVDVDNKPKAF-IHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGY-LSDINPDSLKVSI 781
V+ K I + + +++ L H++ D Y +P+ + D+ P L
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLD--- 470
Query: 782 GYADSGFVG-----VKPYDRFQFERVGFF 805
Y S +G ++ +R R+ F
Sbjct: 471 QYFYS-HIGHHLKNIEHPERMTLFRMVFL 498
Score = 43.7 bits (102), Expect = 3e-04
Identities = 62/465 (13%), Positives = 122/465 (26%), Gaps = 182/465 (39%)
Query: 2 THRTLLEVMRSTY------PEPFCHAYQYIPIHMPGSQDGKPLDNLLFCQK--------- 46
+ T+LE+++ I + + + L K
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYENCLLVL 250
Query: 47 --VQNEPKVVS--NI-----MT----EIADSMISA--------FLSVGLNEKKAKETLKN 85
VQN K + N+ +T ++ D + +A S+ L + K L
Sbjct: 251 LNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-- 307
Query: 86 ETLSTYLKQAI----EEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKAL 141
YL E +P L + + + K++ L
Sbjct: 308 ---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---------WKHVNCDKL 355
Query: 142 DSTLRVDAALEYVLSHVNAVNEKELEASCGV---GVIVTS------------EDIEETVS 186
+ + L+ + +++ V + + D+ V+
Sbjct: 356 TTIIESS------LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 187 KVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADLAP 246
K+ HK L++K+ + S + + +L
Sbjct: 410 KL---HKYSLVEKQ-----------------PKESTI--SIPSIYL----------EL-- 435
Query: 247 VPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTH 306
KVK+ + + +S V+ ++ K D Y
Sbjct: 436 --KVKLENEYALHRS---------IVDHY----NIPKTFDSDDLIPP-YLDQYFY----- 474
Query: 307 DLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAIN------------INFGYAAAHNGIC 354
HI + H K I ++F +
Sbjct: 475 ----SHIGH--------------------HLKNIEHPERMTLFRMVFLDFRFLEQK---- 506
Query: 355 FLRYDDTNPEKEEEKFFTGIKDMVQWLG-YKPYQITHSSDYFHQL 398
+R+D T I + +Q L YKPY I + + +L
Sbjct: 507 -IRHDSTAWNAS-----GSILNTLQQLKFYKPY-ICDNDPKYERL 544
Score = 36.0 bits (82), Expect = 0.061
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 38/149 (25%)
Query: 3 HRTLLEVMRSTYPEPFCHA-----------YQYIPIHMPGSQDGKPLDNLLFCQKVQN-- 49
HR++++ P+ F Y +I H+ + + + LF +
Sbjct: 446 HRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT--LFRMVFLDFR 501
Query: 50 --EPKVVSNIMTEIADSMISAFLSVGLNEKKAKETL-KNE--------TLSTYLKQAIEE 98
E K+ A + + L+ K K + N+ + +L + IEE
Sbjct: 502 FLEQKI---RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK-IEE 557
Query: 99 ASKISPH------SLQDCGSLLYHLASKI 121
S + +L ++ A K
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase
1, glurs 1, structural genomics, joint center for ST
genomics, JCSG; 2.34A {Thermotoga maritima}
Length = 481
Score = 62.6 bits (153), Expect = 2e-10
Identities = 70/319 (21%), Positives = 118/319 (36%), Gaps = 79/319 (24%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
VR RF P P G LH+G A+ NF +A G LR +DT+ E+ E ++ + + +
Sbjct: 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESL 72
Query: 379 QWLG------------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVCHQKSDEM--- 421
+WLG + PY Q S+ +Y E A +L+K+G AY + +E+
Sbjct: 73 RWLGLLWDEGPDVGGDHGPYRQ----SERVE-IYREHAERLVKEGKAYYVYAYPEEIEEM 127
Query: 422 ------KGFNP-LPSPWRERPVEENVKLFEAMKNGLIDEGEA-TLRMKITLEEGK-QDPV 472
+G P E+ + ++G + K+ ++ D V
Sbjct: 128 REKLLSEGKAPHYSQEMFEK------FDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVV 181
Query: 473 AYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLC 527
+ F + I PTY++ + D + ITH + + L
Sbjct: 182 KGEVVF--KTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDD---------HLS 230
Query: 528 NA---LDIYCPVQWE---YGR----LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTA 577
N L +Y + + L + +SKR A +E
Sbjct: 231 NTLRQLALYEAFEKAPPVFAHVSTILGPDGKKLSKRHGATSVEA---------------- 274
Query: 578 LRRRGFPPEAINKFCARMG 596
R G+ PEA+ + A +G
Sbjct: 275 FRDMGYLPEALVNYLALLG 293
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
aminoacylation, protein biosynthesis, aminoacyl-tRNA
synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
PDB: 3pny_A 3pnv_A
Length = 498
Score = 60.2 bits (147), Expect = 2e-09
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 39/169 (23%)
Query: 319 KVRTRFPPEPNGILHIGHAK-AININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
VR RF P P G H+G + A+ N+ YA G R +DT+ +++ E+ + + D
Sbjct: 6 TVRVRFCPSPTGTPHVGLVRTAL-FNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDA 64
Query: 378 VQWLG------------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVCHQKSDEM-- 421
++WLG Y PY Q S +Y + +L+ G AY +E+
Sbjct: 65 LRWLGLDWDEGPEVGGPYGPYRQ----SQRAE-IYRDVLARLLAAGEAYHAFSTPEEVEA 119
Query: 422 ----KGFNPLPS---PWRERPVEENVKLFEAMKNGLIDEGE-ATLRMKI 462
G NP R + + + EG +R+++
Sbjct: 120 RHVAAGRNPKLGYDNFDRHLTDAQ--------RAAYLAEGRQPVVRLRM 160
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 60.0 bits (146), Expect = 2e-09
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 21/120 (17%)
Query: 310 REHIKYTGGKVRTRFPPEPNGILHIGHAK-AININFGYAAAHNGICFLRYDDTNPEKEEE 368
+ I+ VR RF P P G LH+G A+ A+ N+ +A G LR +DT+ E+
Sbjct: 120 PKKIRRCFELVRVRFAPSPTGHLHVGGARTAL-FNWMFARKEGGKFILRIEDTDTERSSR 178
Query: 369 KFFTGIKDMVQWLG------------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVC 414
++ I + ++W G + PY Q S+ +Y E+A KL++ AY
Sbjct: 179 EYEQQILESLRWCGLDWDEGPDIGGDFGPYRQ----SERLE-IYREYAEKLVEDKRAYYV 233
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima} PDB: 3akz_B*
Length = 488
Score = 59.5 bits (145), Expect = 3e-09
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 21/111 (18%)
Query: 319 KVRTRFPPEPNGILHIGHAK-AININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
VR RF P P G LH+G A+ A+ N+ +A G LR +DT+ E+ ++ I +
Sbjct: 25 LVRVRFAPSPTGHLHVGGARTAL-FNWMFARKEGGKFILRIEDTDTERSSREYEQQILES 83
Query: 378 VQWLG------------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVC 414
++W G + PY Q S+ +Y E+A KL++ AY
Sbjct: 84 LRWCGLDWDEGPDIGGDFGPYRQ----SERLE-IYREYAEKLVEDKRAYYV 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 7e-08
Identities = 121/756 (16%), Positives = 199/756 (26%), Gaps = 322/756 (42%)
Query: 130 PLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDI---EETVS 186
PL + + +L+ L V A A +L+ + +E +E +
Sbjct: 8 PLTLSH---GSLEHVLLVPTAS-----FFIA---SQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 187 KVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADLAP 246
EL+ ++ LG Y+ S V+ P
Sbjct: 57 PA------ELV-GKF---LG----------------YVSSLVE--------PSKVGQFDQ 82
Query: 247 VPKVKVNEKKSKPKSNETQENGFE--FVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQ 304
V + + E FE ++E N +I L KL +
Sbjct: 83 VLNLCLTE--------------FENCYLEGN-DIHALAAKLLQENDTT---------LVK 118
Query: 305 THDLLREHIKYTGGKVRTRFP---PEPNGILH---IGHAKAININFGYAAAHNG-----I 353
T +L++ Y ++ + P + + G+A+ + I FG G
Sbjct: 119 TKELIKN---YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FG------GQGNTDD 168
Query: 354 CF--LR--YDDTNP-------------------EKEEEKFFT-GIKDMVQWLGYKPYQIT 389
F LR Y + + EK FT G+ ++++WL P T
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLE-NP-SNT 225
Query: 390 HSSDYFHQLYEWAVKLIKKGLA----Y--VCHQKSDEMKGFNPLPSPWRERPVEENVKLF 443
DY + LI G+ Y GF P +L
Sbjct: 226 PDKDYL-LSIPISCPLI--GVIQLAHYVVTAKL-----LGFTP-------------GELR 264
Query: 444 EAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDS 503
+K G + + A I DSW +S
Sbjct: 265 SYLK-GATGHSQGLV-------------TAVAI------AETDSW-------------ES 291
Query: 504 IEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENI 563
T F + I Y ++ +++ + E +
Sbjct: 292 FFVSVRKAITVLF--------F------IGVRCYEAYPNTSLPPSILED---SLENNEGV 334
Query: 564 ------VNDWDDPRLFTLTALRRRGFPPEA------INKFCARMGVTGAQA-VVS--PNM 608
+++ ++ P +N GA+ VVS P
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN---------GAKNLVVSGPPQS 385
Query: 609 LEAVVREVLNDTAP------RVMVVIDPLPLHIVNFDQ--LNVDTKF---TVPDF--P-- 653
L + + AP R+ P F + L +F P F
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRI-----P-------FSERKLKFSNRFLPVASP-FHSHLL 432
Query: 654 NDATKGSHDIQFD---RTIYIEKSDFKVIQEKGYRRLAP----GQGVGLR-YAGLVLE-- 703
A+ I D + D ++ P G LR +G + E
Sbjct: 433 VPAS---DLINKDLVKNNVSFNAKDIQI----------PVYDTFDGSDLRVLSGSISERI 479
Query: 704 VDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFL--------- 754
VD I PV W + +T L
Sbjct: 480 VD--------CIIR-----LPV----------KWET-----TTQFKATHILDFGPGGASG 511
Query: 755 -----HKNPEDTYQ--VPEGYLSDINPDSLKVSIGY 783
H+N + T + G L DINPD G+
Sbjct: 512 LGVLTHRNKDGTGVRVIVAGTL-DINPDD---DYGF 543
Score = 54.7 bits (131), Expect = 1e-07
Identities = 99/658 (15%), Positives = 188/658 (28%), Gaps = 280/658 (42%)
Query: 81 ETLKNETLSTYLKQAIEE-ASKISPHSLQD-CGSLLYHLASKIKSQSSIHLPLLVKYIVS 138
L+ E + L + E A+ P + + G L +++S ++ ++ ++
Sbjct: 31 SQLQ-EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 139 KALDSTLR---VDAALEYVLSHVNAVNEKELEASCGV------GVIVTSEDIEETVS--- 186
+ + L + A + + + N+ L + + I+ ++ +
Sbjct: 90 EFENCYLEGNDIHA----LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 187 -KVVEKHKA-----------------ELLD--KRYRYNLGLVMQEVRTLLKWADGKYIKS 226
+ V + A EL D + Y +G +++ L + I++
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS----ELIRT 201
Query: 227 EVDV-----QVLNLL----GPKTEADL-----APVPKVKVNEKKSKPKSNETQENGFEFV 272
+D Q LN+L P D P+ S P Q
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI---------SCPLIGVIQ-----LA 247
Query: 273 EENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGIL 332
H YVVT + +T G++R+ G
Sbjct: 248 ---------------H----------YVVTAKLLG-------FTPGELRSYL----KGAT 271
Query: 333 HIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSS 392
GH++ + A + D+ E FF ++ + L
Sbjct: 272 --GHSQGL-----VTAV-----AIAETDS-----WESFFVSVRKAITVL----------- 303
Query: 393 DYFHQLYEWAVKLIKKGLAYVCHQK-----------SDEMKGFNPLPSP------WRERP 435
F G+ C++ D ++ +PSP +
Sbjct: 304 --FFI-----------GVR--CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 436 VEE-----NVKLFE------AMKNG---LIDEG--EATLRMKITLEEGK----------- 468
V++ N L ++ NG L+ G ++ + +TL + K
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 469 --QDPVAYRIKFLP-----HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRS 521
+ + + +FLP H +H L + + I L
Sbjct: 409 FSERKLKFSNRFLPVASPFH---------------SHLLVPASDLINKDLVKNNVS---- 449
Query: 522 SYYWLCNALDIYCPVQWEY----GRLNVNYTVVSKRKIAKLIEENIVN-------DWD-- 568
+ NA DI PV Y G ++ R ++ I E IV+ W+
Sbjct: 450 ---F--NAKDIQIPV---YDTFDGS-DL-------RVLSGSISERIVDCIIRLPVKWETT 493
Query: 569 -----------DP----RLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA 611
P L LT + G TG + V+ L+
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDG---------------TGVR-VIVAGTLDI 535
Score = 38.9 bits (90), Expect = 0.008
Identities = 49/263 (18%), Positives = 86/263 (32%), Gaps = 78/263 (29%)
Query: 5 TLLEVMRSTYPEPFCHAYQYIPIHMPGSQDGKPL-DNL--LFCQKVQNEPKVVSNIMTEI 61
++L+++ P + IH G + GK + +N + + + + I EI
Sbjct: 1660 SILDIVI-NNP-------VNLTIHFGG-EKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 62 ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQ-AI-----------EEASKISP----- 104
+ S + K L + T T Q A+ + I
Sbjct: 1711 NEHSTS------YTFRSEKGLL-SATQFT---QPALTLMEKAAFEDLKSKGLIPADATFA 1760
Query: 105 -HSLQDCG--SLLYHLASKIKSQSSIHLPLLVKY---IVSKAL--DSTLRV--------- 147
HSL G + L LA + +S + + V Y + A+ D R
Sbjct: 1761 GHSL---GEYAALASLADVMSIESLVEV---VFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 148 --------DAALEYVLSHVNAVNEKELEA----SCGVGVIVTSEDIE--ETVSKVVEKHK 193
AL+YV+ V +E V + D+ +TV+ V+ K
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN-QQYVAAGDLRALDTVTNVLNFIK 1873
Query: 194 AELLDKRYRYNLGLVMQEVRTLL 216
+ +D L ++EV L
Sbjct: 1874 LQKIDII-ELQKSLSLEEVEGHL 1895
Score = 36.6 bits (84), Expect = 0.049
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 56/147 (38%)
Query: 599 GAQAVVSPNM-LE-----AVVREVLNDTAPRVM----------VVID-PLPLHIV----- 636
G+Q M ++ ++V + A +VI+ P+ L I
Sbjct: 1625 GSQ---EQGMGMDLYKTSKAAQDVW-NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 637 ------NFDQL----NVDTKFTVPDFPNDATKGSHDIQF-------DRTIY-------IE 672
N+ + VD K + + S F T + +E
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 673 KSDFKVIQEKGYRRLAPGQGVGLRYAG 699
K+ F+ ++ KG L P +AG
Sbjct: 1741 KAAFEDLKSKG---LIPADAT---FAG 1761
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 31.9 bits (73), Expect = 0.74
Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 12/86 (13%)
Query: 338 KAININFGYAAAHN--GICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKP-YQITHSSDY 394
A ++ A H + E + + WL +P Y+ S +
Sbjct: 80 HARMLDPKDIAVHAALAVSH---------TNEHNANAALASLRAWLLSQPQYEQLGSVNL 130
Query: 395 FHQLYEWAVKLIKKGLAYVCHQKSDE 420
+ + + + + + E
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRE 156
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 2.1
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 434 RPVEENVKLFEAMKNGLIDEGEATLRMKITLE 465
+ ++ ++KL+ D A L +K T+E
Sbjct: 23 KKLQASLKLYAD------DSAPA-LAIKATME 47
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 30.2 bits (69), Expect = 2.5
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 23/82 (28%)
Query: 117 LASKIKSQSSIHLPL---LVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVG 173
LA+ I S+S P+ K + + D ++ D +L+Y S
Sbjct: 207 LAADISSKS----PVAVQGSKINLIYSRDHSV--DESLDY---------MATWNMSM--- 248
Query: 174 VIVTSEDIEETVSKVVEKHKAE 195
+ ++DI ++V +EK ++
Sbjct: 249 --LQTQDIIKSVQAAMEKKDSK 268
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 29.8 bits (68), Expect = 2.8
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 14/79 (17%)
Query: 117 LASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIV 176
+A+ I + + + + AL E E
Sbjct: 190 VAASIVGNNQKAV-RALLDSYHRIDALQT--GGALWA---------EAEAARQWMR--ST 235
Query: 177 TSEDIEETVSKVVEKHKAE 195
+ +DI + + V+E+ +++
Sbjct: 236 SGDDIAASRASVIERGRSQ 254
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication;
2.46A {Deinococcus radiodurans}
Length = 578
Score = 29.7 bits (66), Expect = 4.4
Identities = 32/314 (10%), Positives = 85/314 (27%), Gaps = 30/314 (9%)
Query: 155 LSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRT 214
L + + L + G + + + + ++ L + R R +L +
Sbjct: 113 LWLAGIDSLERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSLRAGLAVAEE 172
Query: 215 LLKWADGKYIKSEVDVQVLNLLGPKTEADLAPVPKVKVNEKKSKPKSNETQENGFEFVEE 274
L DV+ G +T ++ ++ Q +G +
Sbjct: 173 LAGALTDLSPAPAGDVR----RGLETVRAAELTVTGTPDDVLARLPELTVQGDGVLSGDY 228
Query: 275 NVNIGDLMKKLPFHKPGENFKSDGYVVTEQTH-DLLREHIKYTGGKVRTRFPPEPNGILH 333
++ P E + + + + ++ + G + + +L
Sbjct: 229 EGVPVEIA-----CAPAEARGALDLLRSGEHFAGQVQAAAQARGFTLTAGGLSRGDEVLP 283
Query: 334 IGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYK--PYQITHS 391
+ + A + + ++V + + +
Sbjct: 284 TPTEAVV-----FHALDLP-FRPAEYREPEHDDLWQTLPDPAELVTVGDLRGMIHTHSTW 337
Query: 392 SDYFHQLYEWAVKLIKKGLAYVC---HQKSDEMKGFNPLPSPWRERPVEE-------NVK 441
SD + E A + G ++ H S N L ++E +
Sbjct: 338 SDGGASIREMAEATLTLGHEFLGTADH--SRAAYYANGLTIERLREQLKEIRELQRAGLP 395
Query: 442 LFEAMKNGLIDEGE 455
+ + ++D+G
Sbjct: 396 IVAGSEVDILDDGS 409
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics,
lyase, NPPSFA, national project on PROT structural and
functional analyses; 2.00A {Aquifex aeolicus}
Length = 262
Score = 29.4 bits (67), Expect = 4.6
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 593 ARMGVTGAQAVVSPNMLEAVVREV 616
+ G TGA+ + ++ V E
Sbjct: 178 SVTGTTGAREKLPYERIKKKVEEY 201
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 29.6 bits (66), Expect = 4.8
Identities = 9/89 (10%), Positives = 23/89 (25%), Gaps = 11/89 (12%)
Query: 327 EPNGILHIGHAKAININFGYAAAHNGICFL--------RYDDTNPEKEEEKFFTGIKDMV 378
P + + + A N + + + + +K ++
Sbjct: 90 YPQKEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYIL 149
Query: 379 QWLGYKP--YQITHSSDYFHQLYEWAVKL 405
G+ I YF ++Y +
Sbjct: 150 A-FGFNEDKTFIYTDYQYFGKMYRTISLV 177
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 29.6 bits (66), Expect = 5.0
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 325 PPEPNGILHIGHA 337
P +G LH+GHA
Sbjct: 42 FPYLSGHLHVGHA 54
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 29.5 bits (66), Expect = 5.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 325 PPEPNGILHIGHA 337
P +G LH+GHA
Sbjct: 42 FPYLSGHLHVGHA 54
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical
chemistry, metalloenzyme, iron-sulfur center; 1.75A
{Clostridium scatologenes} PDB: 2yaj_A*
Length = 897
Score = 29.3 bits (65), Expect = 6.6
Identities = 20/178 (11%), Positives = 49/178 (27%), Gaps = 21/178 (11%)
Query: 189 VEKHKAELLDKRYRYNLGLVMQEVRTLLKWADG-KYIKSEVDVQVLN---LLGPKTEADL 244
+ A ++ + N G V+ ++ A S + +L L+ KT+
Sbjct: 51 ADMEAAYWYNRTWWENDGEVI-----EVRRAKAVAASLSHMTPTILPYEKLVMNKTKNVR 105
Query: 245 A----PVPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYV 300
P +++ NE + +G + + +
Sbjct: 106 GAFPFPWVCASFFNAQAEALMNEVDAPAENEADSVSVVGAGGGNVTESYGNVISIAKKFG 165
Query: 301 VTEQTHDLLREHIKYTGGKVRT-------RFPPEPNGILHIGHAKAININ-FGYAAAH 350
+ ++ +L + K G + P + +I + + F
Sbjct: 166 MRKEEIPVLVKTSKPWEGISVEELSNKYSKMTPGYDQFKNIMESVICMFDSFAIPQGR 223
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 28.5 bits (64), Expect = 7.7
Identities = 13/99 (13%), Positives = 41/99 (41%), Gaps = 24/99 (24%)
Query: 475 RIKFLPHHRTGDSWCI---YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNAL- 530
IK H+ + W + +P D+T +C + E ++ + ++FQ + +
Sbjct: 22 VIKLPDHYVSQGKWFVLFSHPA-DFTP-VCTT-EFVSFARRYEDFQRLG------VDLIG 72
Query: 531 ----DIYCPVQW-----EYGRLNVNYTVVS--KRKIAKL 558
++ ++W + + + + +++ + +A+
Sbjct: 73 LSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR 111
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM
barrel, riken S genomics/proteomics initiative, RSGI,
structural genomics,; 2.00A {Aeropyrum pernix} SCOP:
c.1.10.1
Length = 234
Score = 28.3 bits (64), Expect = 9.3
Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 30/92 (32%)
Query: 548 TVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEA----INKFCA---RMGVTGA 600
+ S +A I+ T L P A + G
Sbjct: 13 RLGSPEDLASRID--------------STLLS-----PRATEEDVRNLVREASDYGF--R 51
Query: 601 QAVVSPNMLEAVVREVLNDTAPRVMVVID-PL 631
AV++P + + ++ VI PL
Sbjct: 52 CAVLTPVYT-VKISGLAEKLGVKLCSVIGFPL 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.405
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,007,817
Number of extensions: 814090
Number of successful extensions: 2066
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2017
Number of HSP's successfully gapped: 41
Length of query: 832
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 730
Effective length of database: 3,853,851
Effective search space: 2813311230
Effective search space used: 2813311230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)