RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17575
(832 letters)
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 255 bits (653), Expect = 7e-79
Identities = 152/313 (48%), Positives = 207/313 (66%), Gaps = 11/313 (3%)
Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
V TRFPPEPNG LHIGHAK+I +NFG A + G C LR+DDTNP KE+ ++ IK+
Sbjct: 18 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 77
Query: 378 VQWLGY-KPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG------FNPLPSP 430
V+WLG+ + +SSDYF QL+ +A++LI KGLAYV ++++ SP
Sbjct: 78 VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSP 137
Query: 431 WRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDS 487
+R+R VEEN+ LFE M+ G +EG+A LR KI + +DPV YRIKF HH+TG+
Sbjct: 138 YRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNK 197
Query: 488 WCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDI-YCPVQWEYGRLNVN 546
WCIYP YD+THC+ D++E ITHSLCT EFQ R Y W+ + + I P Q+E+ RLN+
Sbjct: 198 WCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLE 257
Query: 547 YTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSP 606
YTV+SKRK+ L+ + V WDDPR+ T++ LRRRG+ +I +FC R+GVT +
Sbjct: 258 YTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEM 317
Query: 607 NMLEAVVREVLND 619
LE+ +RE LN+
Sbjct: 318 ASLESCIREDLNE 330
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 197 bits (501), Expect = 2e-57
Identities = 59/309 (19%), Positives = 104/309 (33%), Gaps = 36/309 (11%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TR P P G H+G A N+ +A + G +R +DT+ + I ++
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 380 WLGYK---------PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSP 430
WLG P+ S+ ++A +L+K+G AY + +E++
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121
Query: 431 WRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQ---DPVAYRIKFLPH---HRT 484
+ R + GE + G D + + +
Sbjct: 122 YDGRA----RNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVV 177
Query: 485 GDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRL- 543
YPTY + + D + +T + +E+ + L A P + L
Sbjct: 178 LLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLR 237
Query: 544 NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAV 603
N + T +SKRK +L + GF PEA+ + MG +
Sbjct: 238 NPDKTKISKRK----------------SHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGR 281
Query: 604 VSPNMLEAV 612
+ E +
Sbjct: 282 EIFTLEEFI 290
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 173 bits (438), Expect = 4e-49
Identities = 46/277 (16%), Positives = 81/277 (29%), Gaps = 21/277 (7%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
+ RF P P+G LH G A ++ A A G +R +D +P +E I +
Sbjct: 2 QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQL 61
Query: 379 QWLGY-KPYQITHSSDYFHQLYEWAVKLIKKGLAYV--CHQKSDEMKGFNPLPSPWRERP 435
+ G + S E L ++GL+Y C + + G
Sbjct: 62 EHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHH 121
Query: 436 VEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYD 495
+N + ++ + + + K Y+
Sbjct: 122 GPDNAAVRIRQQH-----------PVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYN 170
Query: 496 YTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYG-RLNVNYTVVSKRK 554
+ D + +T + + L P LN +SK+
Sbjct: 171 LAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQN 230
Query: 555 IAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKF 591
A + DPR + AL+ G EA +
Sbjct: 231 HAPALP------KGDPRPVLIAALQFLGQQAEAHWQD 261
>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS),
C-terminal (anticodon-binding) domain {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 144 bits (365), Expect = 4e-40
Identities = 73/214 (34%), Positives = 102/214 (47%), Gaps = 13/214 (6%)
Query: 621 APRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQ 680
APR M VIDP+ L I N+ T+P+ PN GS + F I+I+++DF+
Sbjct: 1 APRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEA 58
Query: 681 EKGYRRLAPGQGVGLRYAG--LVLEVDKVNTKCNGAITSI---DVKATPVDVDNKPKAFI 735
K Y+RL G+ V LR A V+K I D + K K I
Sbjct: 59 NKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVI 118
Query: 736 HWVA--RPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKP 793
HWV+ + +E+RLY LF NP + +LS INP+SL + G+A+
Sbjct: 119 HWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVIKQGFAEPSLKDAVA 174
Query: 794 YDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
FQFER G+F +D + KPV N TV L++
Sbjct: 175 GKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRD 208
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 38.2 bits (87), Expect = 0.003
Identities = 26/280 (9%), Positives = 60/280 (21%), Gaps = 30/280 (10%)
Query: 303 EQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYA----AAHNGICFLRY 358
++RE + K P+G +H+G+ + + + + +
Sbjct: 5 YIADKIIRERGE--KEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHM 62
Query: 359 DDTN----------PEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKK 408
D P++ ++ I ++ G H F + E +
Sbjct: 63 WDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDL 122
Query: 409 GLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEA------MKNGLIDEGEATLRMKI 462
A +++ + + + N A R +
Sbjct: 123 LYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREA 182
Query: 463 TLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHC------LCDSIEHITHSLCTKEF 516
+ E H D +
Sbjct: 183 EIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAG 242
Query: 517 QSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVV--SKRK 554
S + + P+ Y + + S K
Sbjct: 243 SSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSK 282
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 33.4 bits (75), Expect = 0.10
Identities = 28/251 (11%), Positives = 62/251 (24%), Gaps = 7/251 (2%)
Query: 325 PPEPNGILHIGHA-----KAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
PP NG LH+GHA K + + +D E+ G+
Sbjct: 56 PPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKM 115
Query: 380 WLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEEN 439
+ + +L + + + + + + + + E +
Sbjct: 116 STAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGL 175
Query: 440 VKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHC 499
+ + + +I + + P S D
Sbjct: 176 IYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIEN 235
Query: 500 LCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLI 559
+ + + R + PV + + T + +A L
Sbjct: 236 TNFKVNWGKTRIYNM-VRDRGEWVISRQRVWGVPLPV-FYAENGEIIMTKETVNHVADLF 293
Query: 560 EENIVNDWDDP 570
E+ N W +
Sbjct: 294 AEHGSNIWFER 304
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 32.3 bits (72), Expect = 0.27
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 24/115 (20%)
Query: 325 PPEPNGILHIGHA-----KAININFGYAAAHNGICFLRYDD-------------TNPEKE 366
P P+G LH+GH + F + + + +D +P+
Sbjct: 41 FPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDW 100
Query: 367 EEKFFTGIKDMVQWLG-----YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQ 416
K+ ++ +G + T +Y+ +K+ +KGLAY
Sbjct: 101 TYANIRQAKESLRLMGILYDWDREV-TTCEPEYYRWNQWIFLKMWEKGLAYRAKG 154
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 31.8 bits (71), Expect = 0.28
Identities = 31/248 (12%), Positives = 56/248 (22%), Gaps = 25/248 (10%)
Query: 326 PEPNGILHIGHAKAI---------------NINFGYAAAHNGICFLRYDDTNPEKEEEKF 370
+ HIGH + + + ++ + N E
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMV 89
Query: 371 FTGI----KDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP 426
I KD +P ++ + ++ E +LI KG AYV +
Sbjct: 90 DRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVA-----DNGDVMF 144
Query: 427 LPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGD 486
V L + +D + + P
Sbjct: 145 DVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPS-PWGAGRP 203
Query: 487 SWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVN 546
W I + L + + C Y G + V+
Sbjct: 204 GWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVD 263
Query: 547 YTVVSKRK 554
+SK
Sbjct: 264 REKMSKSL 271
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 30.7 bits (68), Expect = 0.33
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 11/97 (11%)
Query: 506 HITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVN 565
H+ + T++ R L N + + R + ++I +++
Sbjct: 51 HLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPP 110
Query: 566 DWDDPRLFT-----------LTALRRRGFPPEAINKF 591
++P + L L G P E F
Sbjct: 111 PEEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCFVF 147
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 30.7 bits (68), Expect = 0.85
Identities = 34/251 (13%), Positives = 60/251 (23%), Gaps = 45/251 (17%)
Query: 325 PPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYK 384
PP G LH+GHA + +RY K M G++
Sbjct: 42 PPNVTGSLHMGHA------LDNSLQD---ALIRY----------------KRM---RGFE 73
Query: 385 PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFE 444
+ +D+ + V+ + H E F W+E +K +
Sbjct: 74 AVWLP-GTDHAGIATQVVVERLLLKEGKTRHDLGREK--FLERVWQWKEESGGTILKQLK 130
Query: 445 AMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSI 504
+ + E D R R Y +
Sbjct: 131 RL----------GASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCE 180
Query: 505 EHITHSLCTKEFQSRRSSYYWLC----NALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIE 560
++ + Y + + + R V + K +
Sbjct: 181 TTLSDLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDW 240
Query: 561 ENIVNDWDDPR 571
V DW+ R
Sbjct: 241 LENVKDWNISR 251
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 29.9 bits (66), Expect = 1.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 325 PPEPNGILHIGHA 337
PP NG+ H+GHA
Sbjct: 46 PPTANGLPHVGHA 58
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus
thermophilus [TaxId: 274]}
Length = 70
Score = 27.4 bits (61), Expect = 1.5
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 294 FKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAI 340
+ G+V H YT R P +G L G K I
Sbjct: 14 LRRLGFVERMAKGG----HRLYTHPDGRIVVVPFHSGELPKGTFKRI 56
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 194
Score = 29.0 bits (65), Expect = 1.6
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 19/117 (16%)
Query: 277 NIGDLMKKLPFHKPGENFK--SDGYVVTEQT-HDLLREHIKYTGGKVRTRFPPEPNGILH 333
N+ +KK + G+++K G V+ + +L+ E + +
Sbjct: 80 NVAGHIKKALAVECGKSWKKVHSGVYVSRKGLEELIEELSEK--------------YSII 125
Query: 334 IGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITH 390
++I+ A F+ D +E+EK + L
Sbjct: 126 YLKEDGVDIS--NAQLPPNPLFVIGDHEGLTEEQEKVVERYAALKLSLSPLSLLAEQ 180
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 29.4 bits (64), Expect = 1.7
Identities = 14/205 (6%), Positives = 44/205 (21%), Gaps = 9/205 (4%)
Query: 338 KAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQ 397
A+ + + A + + ++ ++ ++ Q
Sbjct: 44 AAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103
Query: 398 LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEAT 457
+ + + L + + L E +
Sbjct: 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR-----ILGSLLSDSLFLEVKEL 158
Query: 458 LRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQ 517
+ L+ DP + + +G+ + + + + + L
Sbjct: 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 218
Query: 518 SRRS----SYYWLCNALDIYCPVQW 538
+S + Y L
Sbjct: 219 GNQSEEAVAAYRRALELQPGYIRSR 243
>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF
{Thermus thermophilus [TaxId: 274]}
Length = 104
Score = 27.8 bits (62), Expect = 1.9
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 164 KELEASCGVGVIVTSEDIEETVSKVVEKHKA--------ELLDKRYRYNLGLVMQEVRTL 215
+ L G ++ E + + VE+ + + + V +R L
Sbjct: 34 ETLVERGGYALVAVDEALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQGHDVEGYMREL 93
Query: 216 LKWADGKYIK 225
++ G IK
Sbjct: 94 VRKTIGFDIK 103
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 28.9 bits (63), Expect = 3.0
Identities = 25/235 (10%), Positives = 52/235 (22%), Gaps = 21/235 (8%)
Query: 325 PPEPNGILHIGHAKAI---------------NINFGYAAAHNGICFLRYDDTNPEKEEEK 369
N H+GHA F +G R E +
Sbjct: 11 IYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAF 70
Query: 370 FFTGIKDMVQWL----GYKPYQITHSSDYFHQLYEW-AVKLIKKGLAYVCHQKSDEMKGF 424
+ I + + ++ + K+ + G Y +
Sbjct: 71 VDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSC 130
Query: 425 NPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRT 484
+ + + + + + L+E Q+ I+ +
Sbjct: 131 ERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQEN-PDLIRPEGYRNE 189
Query: 485 GDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWE 539
+ P D + S L E + L N + + E
Sbjct: 190 VLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGE 244
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio
cholerae [TaxId: 666]}
Length = 201
Score = 28.2 bits (63), Expect = 3.3
Identities = 8/46 (17%), Positives = 12/46 (26%)
Query: 351 NGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFH 396
CF+ D K+ + LG K + H
Sbjct: 146 PNPCFILTDHIPMPKKSGNSMKRLGVEKISLGPKMLFASQCVTLIH 191
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 28.4 bits (62), Expect = 3.8
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 325 PPEPNGILHIGHA 337
P NG +H GH
Sbjct: 10 LPYANGPIHAGHL 22
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 28.3 bits (62), Expect = 4.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 325 PPEPNGILHIGHA 337
P NG +H+GH
Sbjct: 10 LPYANGSIHLGHM 22
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 28.4 bits (62), Expect = 4.3
Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 431 WRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK 468
+ R ++ ++ EA++ +I+E ++ + + GK
Sbjct: 16 GKTRSLQFRIQQLEALQR-MINENLKSISGALASDLGK 52
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 28.0 bits (61), Expect = 4.9
Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 9/128 (7%)
Query: 305 THDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT--- 361
+ + LRE +K F EP+G +H+GH I A I L D
Sbjct: 16 SEEELREVLKKDEKSAYIGF--EPSGKIHLGHYLQIKKMIDLQNAGFDIIILLADLHAYL 73
Query: 362 ----NPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQK 417
++ + K Y +L K +
Sbjct: 74 NQKGELDEIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRS 133
Query: 418 SDEMKGFN 425
+ + +
Sbjct: 134 MELIARED 141
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 27.1 bits (59), Expect = 6.3
Identities = 8/102 (7%), Positives = 28/102 (27%)
Query: 421 MKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLP 480
+ + + + +++ + + + ++I E+ + + F
Sbjct: 17 YRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKD 76
Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSS 522
+ + + + L TK+ S S
Sbjct: 77 NFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYS 118
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
subsp. Thermus thermophilus [TaxId: 271]}
Length = 110
Score = 26.3 bits (58), Expect = 6.3
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 771 DINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSG 830
D D L V Y D G V P R + + + K ++TV L E G
Sbjct: 63 DALEDRLYVKAAYVDEGPA-VLPRARGRADII------------KKRTSHITVILGEKHG 109
Query: 831 K 831
K
Sbjct: 110 K 110
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 27.7 bits (61), Expect = 7.9
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 553 RKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLE 610
R I ++ + V+ +D R+ L + G E +NK + + + NM
Sbjct: 385 RAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAH 442
>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 26.2 bits (56), Expect = 9.7
Identities = 13/121 (10%), Positives = 35/121 (28%), Gaps = 4/121 (3%)
Query: 441 KLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCL 500
LF+ G I + + L +P ++ + + + T D L
Sbjct: 9 TLFDKKGQGAIAKDS----LGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGL 64
Query: 501 CDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIE 560
+ E + + + ++ V L ++ ++ +L++
Sbjct: 65 IEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLK 124
Query: 561 E 561
Sbjct: 125 G 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.405
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,192,686
Number of extensions: 157764
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 30
Length of query: 832
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 739
Effective length of database: 1,130,706
Effective search space: 835591734
Effective search space used: 835591734
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)