BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1758
(1527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/472 (56%), Positives = 353/472 (74%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE 127
RAP+VTIMGHVDHGKTSLL+YIR T V EAGGITQHIGAY+V T +G ITFLDTPGH
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHA 62
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
AFT+MRARGA+ TDIVVLVVAADDGVMPQT EAI HAK + VP++VA+NKIDK + + DR
Sbjct: 63 AFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDR 122
Query: 188 IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVI 247
+K +L ++PEE+GG S F+ +SAK G GI++LL+ I LQAE+LELKA A G +
Sbjct: 123 VKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAV 182
Query: 248 IESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQ 307
IES LDKG+GPVATVL++ GTL DIV+ G YGR+R+M NE G+ +LEAGPSIPVEI
Sbjct: 183 IESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEIL 242
Query: 308 GLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNL 367
GL+ VP +G+E+ V+ +EKKARE+ L+RQGKFR+VKL++Q+ K ENMF ++ + +V +
Sbjct: 243 GLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEV 302
Query: 368 LIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVR 427
I++K DV GS E +++SL LSTD+VK+++I + VG I E+D LA AS AI++GFNVR
Sbjct: 303 NIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVR 362
Query: 428 ADASTRKLAQXXXXXXXXXXXXXXXXKEIKSEITNLIPLEKKENLLGLAEIRQVILVNKV 487
ADAS RK+ + E+K+ ++ ++ E K+ ++GLAE+R V K
Sbjct: 363 ADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKF 422
Query: 488 SKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
IAGC + EG+++R + IR+LR+ +I+ GEL+SL+RFKD+V EV+ G EC
Sbjct: 423 GAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMEC 474
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTR 986
I+ HVDHGKT+L++++ + I I + +E E G+ F
Sbjct: 9 IMGHVDHGKTSLLEYIRSTKVASGEAGGITQHI-GAYHVETENGMITF------------ 55
Query: 987 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNK 1046
+DTPGHA F R D V+L++ A +G MPQT + A +V VNK
Sbjct: 56 ---LDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNK 112
Query: 1047 IDRSNARPEWV 1057
ID+ A P+ V
Sbjct: 113 IDKPEADPDRV 123
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 356 bits (913), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 208/514 (40%), Positives = 307/514 (59%), Gaps = 42/514 (8%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS-ITFLDTPGH 126
R+P+VTIMGHVDHGKT+LLD +RKT V EAGGITQHIGA+ V G ITFLDTPGH
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH 62
Query: 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
AF+AMRARG +VTDIV+LVVAADDGVM QT E+I HAK + VP+++AINK DK + + +
Sbjct: 63 AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE 122
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGV 246
++K++L++ V+ E+YGG + +SA TG + L E AE+LELKA T +G
Sbjct: 123 KVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGT 182
Query: 247 IIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEI 306
+IES DKG+GPV T +IQ GTLR I+VAG S+ ++R M +ENG+ + EA PS+PV I
Sbjct: 183 VIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSMPVGI 242
Query: 307 QGLTKVPFSGEELFVILNEKKAREIGLFR------QGKFRDVKL--SKQKLH-----KTE 353
G +P +G+E+ + +E +ARE+ +R + D+KL K+K H K
Sbjct: 243 IGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDR 302
Query: 354 NMFNDIN--------------------KEKVKN----LLIIIKTDVYGSREVLTESLKNL 389
+ ++ KEK++ L +I+K DV GS E + +
Sbjct: 303 EKYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTY 362
Query: 390 -STDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQXXXXXXXXXXX 448
++ + ++ ++H VG+I+E+D+NLA +I GFNV A ++LA
Sbjct: 363 DASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVNAGNVIQQLAAKKGVKIKLHKI 422
Query: 449 XXXXXKEIKSEITNLIPLEKKENLLGLAEIRQVILVNKVSK---IAGCYILEGLIRRDSK 505
++++ E+++ +P +E+ +G A I + + K +AGC + +G I + K
Sbjct: 423 IYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKK 482
Query: 506 IRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
+++RN ++IW G L SLK KD+ VK G +C
Sbjct: 483 FKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDC 516
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 27/182 (14%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTR 986
I+ HVDHGKTTL+D L RK Q M++ I + G + S +G +
Sbjct: 9 IMGHVDHGKTTLLDKL-------RKTQ---VAAMEAGGITQHIGAFLVSLP-----SGEK 53
Query: 987 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNK 1046
I +DTPGHA F R + D V+L++ A +G M QT + A ++ +NK
Sbjct: 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINK 113
Query: 1047 IDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEA 1106
D++ A PE V +D +C + D ++ SAL G NM+ L EA
Sbjct: 114 CDKAEADPEKVKKELL-AYDVVC-EDYGGDVQAVHVSALTGE----------NMMALAEA 161
Query: 1107 IL 1108
+
Sbjct: 162 TI 163
>pdb|3E3X|A Chain A, The C-Terminal Part Of Bipa Protein From Vibrio
Parahaemolyticus Rimd 2210633
Length = 332
Score = 344 bits (883), Expect = 2e-94, Method: Composition-based stats.
Identities = 174/327 (53%), Positives = 231/327 (70%), Gaps = 4/327 (1%)
Query: 1195 TGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLD 1254
TG+ E+ I TIC + LP L++DEPT+T F VN SP AG EG F+T+R I RL+
Sbjct: 4 TGLGELKISDTICAQNAVEALPALSVDEPTVTXTFQVNTSPFAGXEGXFVTSRNILERLE 63
Query: 1255 HEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGE 1314
E+ +N+ LRV Q D + VSGRGELHL+ILIEN RREG+EL+VSRP VI +G+
Sbjct: 64 KELVHNVALRVEQTDDPDK-FRVSGRGELHLSILIENXRREGFELAVSRPEVIIXEEDGQ 122
Query: 1315 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 1374
L EP+E + +D+ E +QG I + + R G+L + + K RVR ++ PSRGLIGFQ EF
Sbjct: 123 LXEPFETVTIDVXEEHQGGIXENIGLRXGELXDXAPDGKGRVRXDFIXPSRGLIGFQTEF 182
Query: 1375 ITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFI 1434
TLT G+GL+ H F+ Y P ++G+R NGVLI+ +GKA+ +L+ LQ+RGRLFI
Sbjct: 183 XTLTSGSGLLYHTFDHYGPHXGG---NIGQRVNGVLIANAAGKALTNALFNLQERGRLFI 239
Query: 1435 NHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLISPIKITLEYAIEFI 1494
H VYEG +IGIHSRDNDL VN +K KQLTN+R+SG+D+A L PI TLE A+EFI
Sbjct: 240 GHGVEVYEGXVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVXTLEQALEFI 299
Query: 1495 NDDELVEITPKNIRLRKRFLKENERKK 1521
+DDELVE+TP++IR+RK FL E++R +
Sbjct: 300 DDDELVEVTPESIRIRKXFLTESDRXR 326
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 227 bits (578), Expect = 4e-59, Method: Composition-based stats.
Identities = 113/170 (66%), Positives = 134/170 (78%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE 127
R P+VTIMGHVDHGKT+LLD IR + V EAGGITQHIGAY V N ITFLDTPGHE
Sbjct: 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHE 66
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
AFT MRARGA+VTDIV+LVVAADDGVMPQT EAI HAK + VP+IVAINK+DK + N DR
Sbjct: 67 AFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDR 126
Query: 188 IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKA 237
+ Q+L+ ++PEE+GG + F +SAKT G++ LLE I L +E+ ELKA
Sbjct: 127 VMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELKA 176
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERG-ITIFSKNCSIEYNGT 985
I+ HVDHGKTTL+D I S E+E G IT + N
Sbjct: 13 IMGHVDHGKTTLLD-----------------AIRHSKVTEQEAGGITQHIGAYQVTVNDK 55
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
+I +DTPGH F R + D V+L++ A +G MPQT A IV +N
Sbjct: 56 KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAIN 115
Query: 1046 KIDRSNARPEWVV 1058
K+D+ A P+ V+
Sbjct: 116 KMDKPEANPDRVM 128
>pdb|1R3F|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 314
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 137/216 (63%), Gaps = 1/216 (0%)
Query: 656 KKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATK 715
++ I+GVLLLDKP G+SSN+AL+K+K + NA + G+TG LDP ATG+LP+C GEATK
Sbjct: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64
Query: 716 FSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIP 775
FS YL ++DK Y I LG T+T D +G+I++ + + S E + L F G I QIP
Sbjct: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIP 123
Query: 776 PMYSALKYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVL 835
MYSALKY+G LY+YAR G L L IHCSKGTYIR +
Sbjct: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183
Query: 836 SEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTI 871
+D+G+ LGCGAH+ YLRR+ + K +++ + ++ +
Sbjct: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219
>pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase
Trub Bound To A T Stem-Loop Rna
Length = 327
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 135/210 (64%), Gaps = 1/210 (0%)
Query: 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 721
I+GVLLLDKP G+SSN+AL+K+K + NA + G+TG LDP ATG+LP+C GEATKFS YL
Sbjct: 24 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 83
Query: 722 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSAL 781
++DK Y I LG T+T D +G+I++ + + S E + L F G I QIP MYSAL
Sbjct: 84 DSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 142
Query: 782 KYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGK 841
KY+G LY+YAR G L L IHCSKGTYIR + +D+G+
Sbjct: 143 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 202
Query: 842 MLGCGAHLKYLRRIGIDKLTLDKCLNIDTI 871
LGCGAH+ YLRR+ + K +++ + ++ +
Sbjct: 203 KLGCGAHVIYLRRLAVSKYPVERMVTLEHL 232
>pdb|1ZL3|A Chain A, Coupling Of Active Site Motions And Rna Binding
Length = 327
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 135/210 (64%), Gaps = 1/210 (0%)
Query: 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 721
I+GVLLLDKP G+SSN+AL+K+K + NA + G+TG L+P ATG+LP+C GEATKFS YL
Sbjct: 24 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALNPLATGMLPICLGEATKFSQYLL 83
Query: 722 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSAL 781
++DK Y I LG T+T D +G+I++ + + S E + L F G I QIP MYSAL
Sbjct: 84 DSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 142
Query: 782 KYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGK 841
KY+G LY+YAR G L L IHCSKGTYIR + +D+G+
Sbjct: 143 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 202
Query: 842 MLGCGAHLKYLRRIGIDKLTLDKCLNIDTI 871
LGCGAH+ YLRR+ + K +++ + ++ +
Sbjct: 203 KLGCGAHVIYLRRLAVSKYPVERMVTLEHL 232
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 202/437 (46%), Gaps = 103/437 (23%)
Query: 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGA------------------ 108
+R+PIV+++GHVDHGKT+LLD+IR + V EAGGITQHIGA
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
+++ + F+DTPGHEAFT +R RG + D+ +L+V ++G PQT+EA+ ++
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 169 VPLIVAINKID--------------------------KLDINLDRIKQDLISEQVIPEEY 202
P +VA NKID KLD + + L E E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 203 GGASPF------ISISAKTGVGINKLLENI-SLQAEIL--ELKAPVTTPAKGVIIESRLD 253
+ F I ISA TG GI +LL + L + L +LK +PA+G I+E + +
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242
Query: 254 KGKGPVATVLIQSGTLRCSDIVVAGAS----YGRIRSMLN--------ENGKNILE---- 297
G G +I G LR D + S RIRS+L E+ K +
Sbjct: 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEV 302
Query: 298 -AGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMF 356
A I + G+ V +G L V+ + +K RE + L + E++
Sbjct: 303 VAAAGIKIVAPGIDDV-MAGSPLRVVTDPEKVRE----------------EILSEIEDIK 345
Query: 357 NDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESD-INLAI 415
D ++ V ++K D GS E + + L+++ V I+V +G+++ D +N I
Sbjct: 346 IDTDEAGV-----VVKADTLGSLEAVVKILRDMY---VPIKVAD--IGDVSRRDVVNAGI 395
Query: 416 ASK-----AIIIGFNVR 427
A + II FNV+
Sbjct: 396 ALQEDRVYGAIIAFNVK 412
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRK----NQNINARIMDSNEIEKERGITIFSKNCSIE 981
+++ HVDHGKTTL+DH+ + R+ Q+I A + + IE G F K SI
Sbjct: 9 SVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICG--DFLKKFSIR 66
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
+ IDTPGH F +R ++ D +L++D EG PQT+ L++ P
Sbjct: 67 ETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRMYRTPF 125
Query: 1042 VV-VNKIDR 1049
VV NKIDR
Sbjct: 126 VVAANKIDR 134
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 200/437 (45%), Gaps = 103/437 (23%)
Query: 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGA------------------ 108
+R+PIV+++GHVDHGKT+LLD+IR + V EAGGITQHIGA
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFLKK 62
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
+++ + F+DTPGHEAFT +R RG + D+ +L+V ++G PQT+EA+ +
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYR 122
Query: 169 VPLIVAINKID--------------------------KLDINLDRIKQDLISEQVIPEEY 202
P +VA NKID KLD + + L E E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFXETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 203 GGASPF------ISISAKTGVGINKLLENI-SLQAEIL--ELKAPVTTPAKGVIIESRLD 253
+ F I ISA TG GI +LL + L + L +LK +PA+G I+E + +
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTXLXGLAQQYLREQLKIEEDSPARGTILEVKEE 242
Query: 254 KGKGPVATVLIQSGTLRCSDIVVAGASYG----RIRSMLN--------ENGKNILE---- 297
G G +I G LR D + S RIRS+L E+ K +
Sbjct: 243 TGLGXTIDAVIYDGILRKDDTIAXXTSKDVISTRIRSLLKPRPLEEXRESRKKFQKVDEV 302
Query: 298 -AGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMF 356
A I + G+ V +G L V+ + +K RE + L + E++
Sbjct: 303 VAAAGIKIVAPGIDDV-XAGSPLRVVTDPEKVRE----------------EILSEIEDIK 345
Query: 357 NDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESD-INLAI 415
D ++ V ++K D GS E + + L++ V I+V +G+++ D +N I
Sbjct: 346 IDTDEAGV-----VVKADTLGSLEAVVKILRDXY---VPIKVAD--IGDVSRRDVVNAGI 395
Query: 416 ASK-----AIIIGFNVR 427
A + II FNV+
Sbjct: 396 ALQEDRVYGAIIAFNVK 412
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRK----NQNINARIMDSNEIEKERGITIFSKNCSIE 981
+++ HVDHGKTTL+DH+ + R+ Q+I A + + IE G F K SI
Sbjct: 9 SVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICG--DFLKKFSIR 66
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
+ IDTPGH F +R ++ D +L++D EG PQT+ L+ P
Sbjct: 67 ETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRXYRTPF 125
Query: 1042 VV-VNKIDR 1049
VV NKIDR
Sbjct: 126 VVAANKIDR 134
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 133/505 (26%), Positives = 220/505 (43%), Gaps = 69/505 (13%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--- 982
IIAHVDHGK+TL D LL +G + + +++D+ ++E+ERGIT+ + + Y
Sbjct: 10 CIIAHVDHGKSTLADRLLEYTGAISEREK-REQLLDTLDVERERGITVKMQAVRMFYKAK 68
Query: 983 --NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 1040
N ++++IDTPGH DF EV R L+ + LLLIDA +G QT KA++
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVI 128
Query: 1041 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNM 1100
I V+NKID +A VD +++ + + I SA G E
Sbjct: 129 IPVINKIDLPSAD----VDRVKKQIEEVLGLDPE---EAILASAKEGIGIEE-------- 173
Query: 1101 IPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160
+ EAI+ +P K + PL+ I Y Y G + RI G +K +++M+
Sbjct: 174 --ILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTG 231
Query: 1161 DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG----IEEICIGSTICDPSKPNGLP 1216
+ Q D++ +GD+ I + +I IG TI P P
Sbjct: 232 KEYEVTEVGAQTPKMTKFDKL-----SAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEP 286
Query: 1217 MLNIDEPTLTINFMVNNSPLAG-REGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSI- 1274
+ +P + + AG + T ++++ L+ N+ + V + + ++
Sbjct: 287 VPGF-QPAKPMVY-------AGIYPAEDTTYEELRDALEKYAINDAAI-VYEPESSPALG 337
Query: 1275 --YEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL------------------NG 1313
+ V G LH+ I+ E + RE G ++ + P VI++ N
Sbjct: 338 MGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYRVKKKFTDEVIEVRNPMDFPDNA 397
Query: 1314 ELYEPYENLFVDIEEINQ----GIIMQKLNYRGGDLKNIEINEKERVRLEYRIP-SRGLI 1368
L E E FV + I G I+Q + G KN+ + V LEY +P S ++
Sbjct: 398 GLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSEIIV 457
Query: 1369 GFQNEFITLTRGTGLISHVFEEYAP 1393
F ++ +++RG + F Y P
Sbjct: 458 DFHDKIKSISRGFASYDYEFIGYRP 482
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 105/255 (41%), Gaps = 44/255 (17%)
Query: 73 TIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG---------------- 116
I+ HVDHGK++L D + + SE Q + +V G
Sbjct: 10 CIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKD 69
Query: 117 ----SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI 172
+ +DTPGH F+ +R + +L++ A G+ QT A + +I
Sbjct: 70 GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVII 129
Query: 173 VAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISI--SAKTGVGINKLLENISLQA 230
INKID ++DR+K+ + EE G P +I SAK G+GI ++LE I
Sbjct: 130 PVINKIDLPSADVDRVKKQI-------EEVLGLDPEEAILASAKEGIGIEEILEAIV--N 180
Query: 231 EILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNE 290
I K P K +I +S D +G VA V I G ++ D + ML
Sbjct: 181 RIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKI-----------MLMS 229
Query: 291 NGK--NILEAGPSIP 303
GK + E G P
Sbjct: 230 TGKEYEVTEVGAQTP 244
>pdb|1ZE2|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE2|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 1/206 (0%)
Query: 663 HGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSE 722
HG+L+ KP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ + +
Sbjct: 3 HGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62
Query: 723 ADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALK 782
K Y + LG+ TET DI G++++ + EI E I +F G+ Q+PP YSA K
Sbjct: 63 LKKVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIF-SFVGEYDQVPPAYSAKK 121
Query: 783 YKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKM 842
YKG LYK AR G ++ R+ S GTYIR L DIG
Sbjct: 122 YKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYK 181
Query: 843 LGCGAHLKYLRRIGIDKLTLDKCLNI 868
LGCGA L R + T+++ LN+
Sbjct: 182 LGCGATAVELVRESVGPHTIEESLNV 207
>pdb|1ZE1|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|B Chain B, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|C Chain C, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
pdb|1ZE1|D Chain D, Conformational Change Of Pseudouridine 55 Synthase Upon
Its Association With Rna Substrate
Length = 309
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 1/206 (0%)
Query: 663 HGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSE 722
HG+L+ KP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ + +
Sbjct: 3 HGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62
Query: 723 ADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALK 782
K Y + LG+ TET DI G++++ + EI E I +F G+ Q+PP YSA K
Sbjct: 63 LKKVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIF-SFVGEYDQVPPAYSAKK 121
Query: 783 YKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKM 842
YKG LYK AR G ++ R+ S GTYIR L DIG
Sbjct: 122 YKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYK 181
Query: 843 LGCGAHLKYLRRIGIDKLTLDKCLNI 868
LGCGA L R + T+++ LN+
Sbjct: 182 LGCGATAVELVRESVGPHTIEESLNV 207
>pdb|1R3E|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 309
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 1/206 (0%)
Query: 663 HGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSE 722
HG+L+ KP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ + +
Sbjct: 3 HGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62
Query: 723 ADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALK 782
K Y + LG+ TET DI G++++ + + E I + + +F G+ Q+PP YSA K
Sbjct: 63 LKKVYWVKMRLGLITETFDITGEVVE-ERECNVTEEEIREAIFSFVGEYDQVPPAYSAKK 121
Query: 783 YKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKM 842
YKG LYK AR G ++ R+ S GTYIR L DIG
Sbjct: 122 YKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYK 181
Query: 843 LGCGAHLKYLRRIGIDKLTLDKCLNI 868
LGCGA L R + T+++ LN+
Sbjct: 182 LGCGATAVELVRESVGPHTIEESLNV 207
>pdb|2AB4|A Chain A, Dissecting The Roles Of A Strictly Conserved Tyrosine In
Substrate Recognition And Catalysis By Pseudouridine 55
Synthase
Length = 309
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 109/206 (52%), Gaps = 1/206 (0%)
Query: 663 HGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSE 722
HG+L+ KP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ + +
Sbjct: 3 HGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62
Query: 723 ADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALK 782
K + + LG+ TET DI G++++ + EI E I +F G+ Q+PP YSA K
Sbjct: 63 LKKVFWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIF-SFVGEYDQVPPAYSAKK 121
Query: 783 YKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIGKM 842
YKG LYK AR G ++ R+ S GTYIR L DIG
Sbjct: 122 YKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYK 181
Query: 843 LGCGAHLKYLRRIGIDKLTLDKCLNI 868
LGCGA L R + T+++ LN+
Sbjct: 182 LGCGATAVELVRESVGPHTIEESLNV 207
>pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
pdb|1SGV|B Chain B, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
Length = 316
Score = 125 bits (313), Expect = 3e-28, Method: Composition-based stats.
Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 10/215 (4%)
Query: 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 723
G++++DKP G++S++ + + + + ++VG+ GTLDP ATG+L + ATK L+ A
Sbjct: 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66
Query: 724 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPN---SIEIIEKILINFHGKISQIPPMYSA 780
K Y A I LG TT T D EG+++ +++P +IE I+ + G+I Q+P SA
Sbjct: 67 PKSYAATIRLGQTTSTEDAEGQVL---QSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSA 123
Query: 781 LKYKGIPLYKYARSGXXXXXXXXXXX----XXXXXXXXXXXPYLTLRIHCSKGTYIRVLS 836
+K G Y+ AR G + + I CS GTYIR L+
Sbjct: 124 IKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALA 183
Query: 837 EDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTI 871
D+G LG G H+ LRR + + LD+ ++D +
Sbjct: 184 RDLGDALGVGGHVTALRRTRVGRFELDQARSLDDL 218
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 129/504 (25%), Positives = 211/504 (41%), Gaps = 67/504 (13%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--- 982
IIAHVDHGK+TL D LL +G + + +++D+ ++E+ERGIT+ + Y
Sbjct: 10 CIIAHVDHGKSTLADRLLEYTGAISEREK-REQLLDTLDVERERGITVKXQAVRXFYKAK 68
Query: 983 --NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 1040
N ++++IDTPGH DF EV R L+ + LLLIDA +G QT KA++
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVI 128
Query: 1041 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNM 1100
I V+NKID +A VD +++ + + I SA G E
Sbjct: 129 IPVINKIDLPSAD----VDRVKKQIEEVLGLDPE---EAILASAKEGIGIEE-------- 173
Query: 1101 IPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160
+ EAI+ +P K + PL+ I Y Y G + RI G +K + + +
Sbjct: 174 --ILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIXLXSTG 231
Query: 1161 DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG----IEEICIGSTICDPSKPNGLP 1216
+ Q D++ +GD+ I + +I IG TI P P
Sbjct: 232 KEYEVTEVGAQTPKXTKFDKL-----SAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEP 286
Query: 1217 MLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSI-- 1274
+ + + + + T ++++ L+ N+ + V + + ++
Sbjct: 287 VPGFQPAKPXVYAGIYPA-------EDTTYEELRDALEKYAINDAAI-VYEPESSPALGX 338
Query: 1275 -YEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL------------------NGE 1314
+ V G LH I+ E + RE G ++ + P VI++ N
Sbjct: 339 GFRVGFLGLLHXEIVQERLEREYGVKIITTAPNVIYRVKKKFTDEVIEVRNPXDFPDNAG 398
Query: 1315 LYEPYENLFVDIEEINQ----GIIMQKLNYRGGDLKNIEINEKERVRLEYRIP-SRGLIG 1369
L E E FV + I G I+Q + G KN + V LEY P S ++
Sbjct: 399 LIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNXTYLDPNTVYLEYEXPLSEIIVD 458
Query: 1370 FQNEFITLTRGTGLISHVFEEYAP 1393
F ++ +++RG + F Y P
Sbjct: 459 FHDKIKSISRGFASYDYEFIGYRP 482
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 96/223 (43%), Gaps = 31/223 (13%)
Query: 73 TIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG---------------- 116
I+ HVDHGK++L D + + SE Q + +V G
Sbjct: 10 CIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQAVRXFYKAKD 69
Query: 117 ----SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI 172
+ +DTPGH F+ +R + +L++ A G+ QT A + +I
Sbjct: 70 GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVII 129
Query: 173 VAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISI--SAKTGVGINKLLENISLQA 230
INKID ++DR+K+ + EE G P +I SAK G+GI ++LE I
Sbjct: 130 PVINKIDLPSADVDRVKKQI-------EEVLGLDPEEAILASAKEGIGIEEILEAIV--N 180
Query: 231 EILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSD 273
I K P K +I +S D +G VA V I G ++ D
Sbjct: 181 RIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGD 223
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 132/238 (55%), Gaps = 23/238 (9%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
+IIAH+DHGK+TL D +++ G ++ + A+++DS ++E+ERGITI +++ +++Y +
Sbjct: 8 SIIAHIDHGKSTLSDRIIQICGGL-SDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS 66
Query: 986 -----RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 1040
++N IDTPGH DF EV R L+ + LL++DA +G QT A+++ +
Sbjct: 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEV 126
Query: 1041 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNM 1100
+ V+NKID A PE V + D+ + AT+ + SA G ++
Sbjct: 127 VPVLNKIDLPAADPERVAEEIEDIV-GIDATD------AVRCSAKTGVGVQD-------- 171
Query: 1101 IPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 1158
+ E +++ +P + + PLQ II + +YLG + + RI +G ++ V +M+
Sbjct: 172 --VLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMS 227
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 34/238 (14%)
Query: 73 TIMGHVDHGKTSLLDYIRKTNVVFSE---------------AGGITQHIGAYNVVTNHGS 117
+I+ H+DHGK++L D I + S+ GIT I A +V ++ +
Sbjct: 8 SIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT--IKAQSVTLDYKA 65
Query: 118 -------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
+ F+DTPGH F+ +R + +LVV A GV QT A +
Sbjct: 66 SDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE 125
Query: 171 LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230
++ +NKID + +R+ +++ E ++ + A+ + SAKTGVG+ +LE L
Sbjct: 126 VVPVLNKIDLPAADPERVAEEI--EDIVGID---ATDAVRCSAKTGVGVQDVLER--LVR 178
Query: 231 EILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSD---IVVAGASYGRIR 285
+I + P + +II+S D G V+ + I++GTLR D ++ G +Y R
Sbjct: 179 DIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADR 236
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 132/238 (55%), Gaps = 23/238 (9%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
+IIAH+DHGK+TL D +++ G ++ + A+++DS ++E+ERGITI +++ +++Y +
Sbjct: 8 SIIAHIDHGKSTLSDRIIQICGGL-SDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS 66
Query: 986 -----RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 1040
++N IDTPGH DF EV R L+ + LL++DA +G QT A+++ +
Sbjct: 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEV 126
Query: 1041 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNM 1100
+ V+NKID A PE V + D+ + AT+ + SA G ++
Sbjct: 127 VPVLNKIDLPAADPERVAEEIEDIV-GIDATD------AVRCSAKTGVGVQD-------- 171
Query: 1101 IPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 1158
+ E +++ +P + + PLQ II + +YLG + + RI +G ++ V +M+
Sbjct: 172 --VLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMS 227
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 34/238 (14%)
Query: 73 TIMGHVDHGKTSLLDYIRKTNVVFSE---------------AGGITQHIGAYNVVTNHGS 117
+I+ H+DHGK++L D I + S+ GIT I A +V ++ +
Sbjct: 8 SIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT--IKAQSVTLDYKA 65
Query: 118 -------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
+ F+DTPGH F+ +R + +LVV A GV QT A +
Sbjct: 66 SDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE 125
Query: 171 LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230
++ +NKID + +R+ +++ E ++ + A+ + SAKTGVG+ +LE L
Sbjct: 126 VVPVLNKIDLPAADPERVAEEI--EDIVGID---ATDAVRCSAKTGVGVQDVLER--LVR 178
Query: 231 EILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSD---IVVAGASYGRIR 285
+I + P + +II+S D G V+ + I++GTLR D ++ G +Y R
Sbjct: 179 DIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADR 236
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With Catalytic
Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With Catalytic
Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With Catalytic
Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 82/141 (58%), Gaps = 16/141 (11%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI----- 980
++IAHVDHGK+TL D L++++G + AR D+ + E+ERGITI S S+
Sbjct: 23 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 82
Query: 981 -----------EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFV 1029
+ N IN+ID+PGH DF EV L + D L+++D +EG QT V
Sbjct: 83 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 142
Query: 1030 TRKALKLGFKPIVVVNKIDRS 1050
R+AL KP+VV+NK+DR+
Sbjct: 143 LRQALGERIKPVVVINKVDRA 163
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 32/153 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------------GIT---QHIGAYNVV 112
++++ HVDHGK++L D + + + S A GIT I Y+ +
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 113 T-------------NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTRE 159
+ N I +D+PGH F++ +VTD ++VV +GV QT
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 141
Query: 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDL 192
+ A + +V INK+D+ + L K+DL
Sbjct: 142 VLRQALGERIKPVVVINKVDRALLELQVSKEDL 174
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 82/141 (58%), Gaps = 16/141 (11%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI----- 980
++IAHVDHGK+TL D L++++G + AR D+ + E+ERGITI S S+
Sbjct: 23 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 82
Query: 981 -----------EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFV 1029
+ N IN+ID+PGH DF EV L + D L+++D +EG QT V
Sbjct: 83 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 142
Query: 1030 TRKALKLGFKPIVVVNKIDRS 1050
R+AL KP+VV+NK+DR+
Sbjct: 143 LRQALGERIKPVVVINKVDRA 163
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 32/153 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------------GIT---QHIGAYNVV 112
++++ HVDHGK++L D + + + S A GIT I Y+ +
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 113 T-------------NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTRE 159
+ N I +D+PGH F++ +VTD ++VV +GV QT
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 141
Query: 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDL 192
+ A + +V INK+D+ + L K+DL
Sbjct: 142 VLRQALGERIKPVVVINKVDRALLELQVSKEDL 174
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From
Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From
Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRK--NQNINARIMDSNEIEKERGITIFSKNCSIEYN 983
IIAH+D GKTT + +L +G K + A MD E E++RGITI S + +
Sbjct: 14 GIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE 73
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
G R+NIIDTPGH DF EVER L ++D + ++DA G PQT V R+A G IV
Sbjct: 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVF 133
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
VNK+D+ A E+ V L D+L A + P+
Sbjct: 134 VNKMDKLGANFEYSVST---LHDRLQANAAPIQLPI 166
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 37/69 (53%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
+ +DTPGH FT R +V D V V+ A GV PQT A GVP IV +NK
Sbjct: 77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNK 136
Query: 178 IDKLDINLD 186
+DKL N +
Sbjct: 137 MDKLGANFE 145
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 35/228 (15%)
Query: 1103 LFEAILKYVPVHKD-------NSNNPLQLQII----SLEYSS---------YLGKIGIGR 1142
+ +A++ Y+P D ++NP + I S E+++ Y+GK+ R
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI 1202
+ SG + S + N K + ++ ++ R ++ SGDI G+++
Sbjct: 330 VYSGTMTS--GSYVKNST--KGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGT 385
Query: 1203 GSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIG 1262
G T+C L + EP + ++ + + + + Q ++ H +
Sbjct: 386 GDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEET 445
Query: 1263 LRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 1309
+V + G GELHL IL++ M++E E +V P V ++
Sbjct: 446 GQVI----------IGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G
Length = 693
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRK--NQNINARIMDSNEIEKERGITIFSKNCSIEYN 983
I+AH+D GKTT + +L +G K + A MD E E++RGITI S + +
Sbjct: 14 GIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE 73
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
G R+NIIDTPGH DF EVER L ++D + ++DA G PQT V R+A G IV
Sbjct: 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVF 133
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
VNK+D+ A E+ V L D+L A + P+
Sbjct: 134 VNKMDKLGANFEYSVST---LHDRLQANAAPIQLPI 166
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 65 SLVRAPIVTIMGHVDHGKTS----LLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS--- 117
SL + + IM H+D GKT+ +L Y + + + G +Q + + G
Sbjct: 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGITIT 64
Query: 118 ------------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAK 165
+ +DTPGH FT R +V D V V+ A GV PQT A
Sbjct: 65 SAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 166 ISGVPLIVAINKIDKLDINLD 186
GVP IV +NK+DKL N +
Sbjct: 125 TYGVPRIVFVNKMDKLGANFE 145
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 35/228 (15%)
Query: 1103 LFEAILKYVPVHKD-------NSNNPLQLQII----SLEYSS---------YLGKIGIGR 1142
+ +A++ Y+P D ++NP + I S E+++ Y+GK+ R
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI 1202
+ SG + S + N K + ++ ++ R ++ SGDI G+++
Sbjct: 330 VYSGTMTS--GSYVKNST--KGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGT 385
Query: 1203 GSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIG 1262
G T+C L + EP + ++ + + + + Q ++ H +
Sbjct: 386 GDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEET 445
Query: 1263 LRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 1309
+V + G GELHL IL++ M++E E +V P V ++
Sbjct: 446 GQVI----------IGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 19/174 (10%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM--DSNEIEKERGITIFSKNCS 979
+I ++AHVD GKTTL + LL SG + +++ D+ +E++RGITI + S
Sbjct: 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 61
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
++ T++NIIDTPGH DF EV R LS++D +LLI A +G QTR + K+G
Sbjct: 62 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 121
Query: 1040 PIVVVNKID-------------RSNARPEWVVDATFDLFDKLCAT----EEQLD 1076
I +NKID + E V+ +L+ +C T EQ D
Sbjct: 122 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWD 175
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 60 NITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSIT 119
+T L + +T +G VD G T R N + GIT G + + +
Sbjct: 17 TLTESLLYNSGAITELGSVDKGTT------RTDNTLLERQRGITIQTGITSFQWENTKVN 70
Query: 120 FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKID 179
+DTPGH F A R V D +L+++A DGV QTR + G+P I INKID
Sbjct: 71 IIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKID 130
Query: 180 KLDINLDRIKQDL 192
+ I+L + QD+
Sbjct: 131 QNGIDLSTVYQDI 143
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G With Mutations M16i And F88l
Length = 693
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRK--NQNINARIMDSNEIEKERGITIFSKNCSIEYN 983
IIAH+D GKTT + +L +G K + A MD E E++RGITI S + +
Sbjct: 14 GIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE 73
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
G R+NIIDTPGH D EVER L ++D + ++DA G PQT V R+A G IV
Sbjct: 74 GHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVF 133
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
VNK+D+ A E+ V L D+L A + P+
Sbjct: 134 VNKMDKLGANFEYSVST---LHDRLQANAAPIQLPI 166
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
+ +DTPGH T R +V D V V+ A GV PQT A GVP IV +NK
Sbjct: 77 VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNK 136
Query: 178 IDKLDINLD 186
+DKL N +
Sbjct: 137 MDKLGANFE 145
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 35/228 (15%)
Query: 1103 LFEAILKYVPVHKD-------NSNNPLQLQII----SLEYSS---------YLGKIGIGR 1142
+ +A++ Y+P D ++NP + I S E+++ Y+GK+ R
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI 1202
+ SG + S + N K + ++ ++ R ++ SGDI G+++
Sbjct: 330 VYSGTMTS--GSYVKNST--KGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGT 385
Query: 1203 GSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIG 1262
G T+C L + EP + ++ + + + + Q ++ H +
Sbjct: 386 GDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEET 445
Query: 1263 LRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 1309
+V + G GELHL IL++ M++E E +V P V ++
Sbjct: 446 GQVI----------IGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation Factor
G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRK--NQNINARIMDSNEIEKERGITIFSKNCSIEYN 983
I+AH+D GKTT + +L +G K + A MD E E++RGITI S + +
Sbjct: 14 GIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE 73
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
G R+NIIDTPGH D EVER L ++D + ++DA G PQT V R+A G IV
Sbjct: 74 GHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVF 133
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
VNK+D+ A E+ V L D+L A + P+
Sbjct: 134 VNKMDKLGANFEYSVST---LHDRLQANAAPIQLPI 166
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 20/141 (14%)
Query: 65 SLVRAPIVTIMGHVDHGKTS----LLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS--- 117
SL + + IM H+D GKT+ +L Y + + + G +Q + + G
Sbjct: 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGITIT 64
Query: 118 ------------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAK 165
+ +DTPGH T R +V D V V+ A GV PQT A
Sbjct: 65 SAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 166 ISGVPLIVAINKIDKLDINLD 186
GVP IV +NK+DKL N +
Sbjct: 125 TYGVPRIVFVNKMDKLGANFE 145
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 35/228 (15%)
Query: 1103 LFEAILKYVPVHKD-------NSNNPLQLQII----SLEYSS---------YLGKIGIGR 1142
+ +A++ Y+P D ++NP + I S E+++ Y+GK+ R
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI 1202
+ SG + S + N K + ++ ++ R ++ SGDI G+++
Sbjct: 330 VYSGTMTS--GSYVKNST--KGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGT 385
Query: 1203 GSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIG 1262
G T+C L + EP + ++ + + + + Q ++ H +
Sbjct: 386 GDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEET 445
Query: 1263 LRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 1309
+V + G GELHL IL++ M++E E +V P V ++
Sbjct: 446 GQVI----------IGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYN 983
I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
NK+D++ A W+V T ++L A + P+
Sbjct: 136 ANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 1111 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 1170
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 1171 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 1230
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 1290
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 1291 NMRRE-GYELSVSRPRVIFK 1309
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 72 VTIMGHVDHGKTS----LLDY---IRKTNVVFSEAG-----------GITQHIGAYNVVT 113
+ I H+D GKT+ +L Y I K V A GIT
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 74
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
I +DTPGH FT R +V D ++V + GV PQ+ A+ VP I
Sbjct: 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 134
Query: 174 AINKIDKLDINL 185
NK+DK +L
Sbjct: 135 FANKMDKTGADL 146
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By Tmrna-Smpb
And Ef-G During Translocation And Mld-Loading (30s
Subunit)
Length = 691
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYN 983
I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
NK+D++ A W+V T ++L A + P+
Sbjct: 136 ANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 1111 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 1170
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 1171 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 1230
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 1290
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 1291 NMRRE-GYELSVSRPRVIFK 1309
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 72 VTIMGHVDHGKTS----LLDY---IRKTNVVFSEAG-----------GITQHIGAYNVVT 113
+ I H+D GKT+ +L Y I K V A GIT
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 74
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
I +DTPGH FT R +V D ++V + GV PQ+ A+ VP I
Sbjct: 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 134
Query: 174 AINKIDKLDINL 185
NK+DK +L
Sbjct: 135 FANKMDKTGADL 146
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With
Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In The
Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G, Gdp
And Fusidic Acid
Length = 691
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYN 983
I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
NK+D++ A W+V T ++L A + P+
Sbjct: 136 ANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 1111 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 1170
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 1171 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 1230
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 1290
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 1291 NMRRE-GYELSVSRPRVIFK 1309
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 72 VTIMGHVDHGKTS----LLDY---IRKTNVVFSEAG-----------GITQHIGAYNVVT 113
+ I H+D GKT+ +L Y I K V A GIT
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 74
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
I +DTPGH FT R +V D ++V + GV PQ+ A+ VP I
Sbjct: 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 134
Query: 174 AINKIDKLDINL 185
NK+DK +L
Sbjct: 135 FANKMDKTGADL 146
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYN 983
I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
NK+D++ A W+V T ++L A + P+
Sbjct: 136 ANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 1111 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 1170
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 1171 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 1230
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 1290
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 1291 NMRRE-GYELSVSRPRVIFK 1309
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 72 VTIMGHVDHGKTS----LLDY---IRKTNVVFSEAG-----------GITQHIGAYNVVT 113
+ I H+D GKT+ +L Y I K V A GIT
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 74
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
I +DTPGH FT R +V D ++V + GV PQ+ A+ VP I
Sbjct: 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 134
Query: 174 AINKIDKLDINL 185
NK+DK +L
Sbjct: 135 FANKMDKTGADL 146
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant
Mutant G16v
Length = 691
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 5/155 (3%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNG 984
I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + + +
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD 76
Query: 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 1044
RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFA 136
Query: 1045 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
NK+D++ A W+V T ++L A + P+
Sbjct: 137 NKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 1111 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 1170
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 1171 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 1230
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 1290
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 1291 NMRRE-GYELSVSRPRVIFK 1309
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 72 VTIMGHVDHGKTS----LLDY---IRKTNVVFSEAG-----------GITQHIGAYNVVT 113
+ I H+D GKT+ +L Y I K V A GIT
Sbjct: 15 IVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 74
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
I +DTPGH FT R +V D ++V + GV PQ+ A+ VP I
Sbjct: 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 134
Query: 174 AINKIDKLDINL 185
NK+DK +L
Sbjct: 135 FANKMDKTGADL 146
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant
Mutant T84a
Length = 691
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 5/156 (3%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYN 983
I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
RINIID PGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 76 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
NK+D++ A W+V T ++L A + P+
Sbjct: 136 ANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 1111 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 1170
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 1171 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 1230
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 1290
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 1291 NMRRE-GYELSVSRPRVIFK 1309
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 52/132 (39%), Gaps = 18/132 (13%)
Query: 72 VTIMGHVDHGKTS----LLDY---IRKTNVVFSEAG-----------GITQHIGAYNVVT 113
+ I H+D GKT+ +L Y I K V A GIT
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTTCFW 74
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
I +D PGH FT R +V D ++V + GV PQ+ A+ VP I
Sbjct: 75 KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 134
Query: 174 AINKIDKLDINL 185
NK+DK +L
Sbjct: 135 FANKMDKTGADL 146
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 5/156 (3%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYN 983
I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
RINIID PGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 76 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
NK+D++ A W+V T ++L A + P+
Sbjct: 136 ANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 52/132 (39%), Gaps = 18/132 (13%)
Query: 72 VTIMGHVDHGKTS----LLDY---IRKTNVVFSEAG-----------GITQHIGAYNVVT 113
+ I H+D GKT+ +L Y I K V A GIT
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 74
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
I +D PGH FT R +V D ++V + GV PQ+ A+ VP I
Sbjct: 75 KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 134
Query: 174 AINKIDKLDINL 185
NK+DK +L
Sbjct: 135 FANKMDKTGADL 146
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 1111 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 1170
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 1171 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 1230
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 1290
+ A +E Q RL E V+ + S +SG GEL L I+++
Sbjct: 413 IEPKTKADQE----KLSQALARLAEESPT---FSVSTHPETGSTI-ISGMGELSLEIIVD 464
Query: 1291 NMRRE-GYELSVSRPRVIFK 1309
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 5/156 (3%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYN 983
I AH+D GKTT + +L +G K ++ A MD E E+ERGITI + + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
RINIID PGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 76 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 135
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
NK+D++ A W+V T ++L A + P+
Sbjct: 136 ANKMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 168
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 1111 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 1170
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 299 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 353
Query: 1171 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 1230
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 354 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 412
Query: 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 1290
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 413 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 464
Query: 1291 NMRRE-GYELSVSRPRVIFK 1309
++RE + +V +P+V ++
Sbjct: 465 RLKREFKVDANVGKPQVAYR 484
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 52/132 (39%), Gaps = 18/132 (13%)
Query: 72 VTIMGHVDHGKTS----LLDY---IRKTNVVFSEAG-----------GITQHIGAYNVVT 113
+ I H+D GKT+ +L Y I K V A GIT
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 74
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
I +D PGH FT R +V D ++V + GV PQ+ A+ VP I
Sbjct: 75 KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 134
Query: 174 AINKIDKLDINL 185
NK+DK +L
Sbjct: 135 FANKMDKTGADL 146
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITI-------FSK 976
I AH+D GKTT + +L +G K ++ A MD E E+ERGITI F
Sbjct: 14 GISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWS 73
Query: 977 NCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL 1036
+ +Y RINIIDTPGH DF EVER + ++D +++ AV G PQ+ V R+A K
Sbjct: 74 GMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY 133
Query: 1037 GFKPIVVVNKIDRSNA 1052
I VNK+DR A
Sbjct: 134 KVPRIAFVNKMDRMGA 149
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 19/214 (8%)
Query: 1101 IPLFEAIL---KYVPVHKDNSNN-PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156
+P IL K P + S++ P + ++G + R+ SG + S D V+
Sbjct: 292 VPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNS-GDTVL 350
Query: 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLP 1216
+ + +I Q+ K R + E +GDI G++++ G T+CDP P L
Sbjct: 351 NSVKAARERFGRIVQMHANK---REEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILE 407
Query: 1217 MLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYE 1276
+ EP ++I V A +E ++ L K + RV ++ +
Sbjct: 408 RMEFPEPVISI--AVEPKTKADQE-------KMGLALGRLAKEDPSFRVWTDEESNQTI- 457
Query: 1277 VSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 1309
++G GELHL I+++ M+RE E +V +P+V ++
Sbjct: 458 IAGMGELHLDIIVDRMKREFNVEANVGKPQVAYR 491
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
I +DTPGH FT R +V D V+V A GV PQ+ A VP I +NK
Sbjct: 84 INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNK 143
Query: 178 IDKLDINLDRI 188
+D++ N ++
Sbjct: 144 MDRMGANFLKV 154
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 1308 FKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGL 1367
FK L EP + V+ E N G ++ L+ R G LK E +E V++ +P +
Sbjct: 605 FKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQE-SEVTGVKIHAEVPLSEM 663
Query: 1368 IGFQNEFITLTRGTGLISHVFEEY 1391
G+ + +LT+G + F +Y
Sbjct: 664 FGYATQLRSLTKGRASYTMEFLKY 687
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And
The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITI-------FSK 976
I AH+D GKTT + +L +G K ++ A MD E E+ERGITI F
Sbjct: 13 GISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWS 72
Query: 977 NCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL 1036
+ +Y RINIIDTPGH DF EVER + ++D +++ AV G PQ+ V R+A K
Sbjct: 73 GMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY 132
Query: 1037 GFKPIVVVNKIDRSNA 1052
I VNK+DR A
Sbjct: 133 KVPRIAFVNKMDRMGA 148
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 19/214 (8%)
Query: 1101 IPLFEAIL---KYVPVHKDNSNN-PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156
+P IL K P + S++ P + ++G + R+ SG + S D V+
Sbjct: 291 VPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNS-GDTVL 349
Query: 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLP 1216
+ + +I Q+ K R + E +GDI G++++ G T+CDP P L
Sbjct: 350 NSVKAARERFGRIVQMHANK---REEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILE 406
Query: 1217 MLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYE 1276
+ EP ++I V A +E ++ L K + RV ++ +
Sbjct: 407 RMEFPEPVISI--AVEPKTKADQE-------KMGLALGRLAKEDPSFRVWTDEESNQTI- 456
Query: 1277 VSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 1309
++G GELHL I+++ M+RE E +V +P+V ++
Sbjct: 457 IAGMGELHLDIIVDRMKREFNVEANVGKPQVAYR 490
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
I +DTPGH FT R +V D V+V A GV PQ+ A VP I +NK
Sbjct: 83 INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNK 142
Query: 178 IDKLDINLDRI 188
+D++ N ++
Sbjct: 143 MDRMGANFLKV 153
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 1308 FKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGL 1367
FK L EP + V+ E N G ++ L+ R G LK E +E V++ +P +
Sbjct: 604 FKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQE-SEVTGVKIHAEVPLSEM 662
Query: 1368 IGFQNEFITLTRGTGLISHVFEEY 1391
G+ + +LT+G + F +Y
Sbjct: 663 FGYATQLRSLTKGRASYTMEFLKY 686
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270
A
Length = 405
Score = 92.4 bits (228), Expect = 2e-18, Method: Composition-based stats.
Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 29/306 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKN 977
+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAALTYVTAA----ENPNVEVKDYGDIDKAPEERARGITINTAH 67
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 1038 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 1093
IVV +NK+D + PE + ++ D L E D PVI SAL + N
Sbjct: 128 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNP 186
Query: 1094 KARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147
K R+G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 187 KTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246
Query: 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIG 1203
+K +V I+ G + K + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 1204 STICDP 1209
+ P
Sbjct: 302 QVLAKP 307
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 50/247 (20%)
Query: 72 VTIMGHVDHGKTSL---LDYI---RKTNVVFSEAG-----------GITQHIGAYNVVTN 114
V +GHVDHGKT+L L Y+ NV + G GIT + T
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 73
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP IV
Sbjct: 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 133
Query: 175 -INKIDKLDIN--LDRIK---QDLISEQVIPEEYGGASPFISISA-----------KTGV 217
+NK+D +D LD ++ +DL+++ P G P I SA KT
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFP---GDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 218 GINKLLENI---------SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268
G N+ ++ I + + ++ P P + V + G+G VAT I+ G
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTIT----GRGTVATGRIERGK 246
Query: 269 LRCSDIV 275
++ D V
Sbjct: 247 VKVGDEV 253
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 74/136 (54%), Gaps = 9/136 (6%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITI-------FSK 976
I AHVD GKTT + +L +G K ++ A D E+ERGITI F K
Sbjct: 17 GICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWK 76
Query: 977 NCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL 1036
+Y+ R+N+IDTPGH DF EVER L ++D +++ G PQ+ V R+A K
Sbjct: 77 GSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY 136
Query: 1037 GFKPIVVVNKIDRSNA 1052
G IV VNK+DR A
Sbjct: 137 GVPRIVYVNKMDRQGA 152
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 16/197 (8%)
Query: 1114 HKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIR 1173
H D+ N P + ++G + R+ SG + S V+ K K ++ ++
Sbjct: 313 HADD-NEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVL----NSVKGKKERVGRMV 367
Query: 1174 VFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNN 1233
R + E +GDI + G++++ G T+C KP L ++ EP +++ V
Sbjct: 368 QMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPIILERMDFPEPVISV--AVEP 425
Query: 1234 SPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMR 1293
A +E I ++ + + RV ++ +SG GELHL I+++ M+
Sbjct: 426 KTKADQEKMGIALGKLA-------QEDPSFRVKTDEESGQTI-ISGMGELHLDIIVDRMK 477
Query: 1294 RE-GYELSVSRPRVIFK 1309
RE G E ++ +P+V ++
Sbjct: 478 REFGVEANIGKPQVAYR 494
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
+ +DTPGH FT R +V D V+V GV PQ+ A GVP IV +NK
Sbjct: 87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNK 146
Query: 178 IDKLDINLDRIKQDL 192
+D+ N R+ + +
Sbjct: 147 MDRQGANFLRVVEQI 161
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 92.4 bits (228), Expect = 2e-18, Method: Composition-based stats.
Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 29/306 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKN 977
+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAH 67
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 1038 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 1093
IVV +NK+D + PE + ++ D L E D PVI SAL + N
Sbjct: 128 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNP 186
Query: 1094 KARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147
K R+G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 187 KTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246
Query: 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIG 1203
+K +V I+ G + K + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 1204 STICDP 1209
+ P
Sbjct: 302 QVLAKP 307
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 50/247 (20%)
Query: 72 VTIMGHVDHGKTSL---LDYI---RKTNVVFSEAG-----------GITQHIGAYNVVTN 114
V +GHVDHGKT+L L Y+ NV + G GIT + T
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 73
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP IV
Sbjct: 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 133
Query: 175 -INKIDKLDIN--LDRIK---QDLISEQVIPEEYGGASPFISISA-----------KTGV 217
+NK+D +D LD ++ +DL+++ P G P I SA KT
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFP---GDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 218 GINKLLENI---------SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268
G N+ ++ I + + ++ P P + V + G+G VAT I+ G
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTIT----GRGTVATGRIERGK 246
Query: 269 LRCSDIV 275
++ D V
Sbjct: 247 VKVGDEV 253
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 92.0 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 29/306 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKN 977
+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAH 67
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 1038 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 1093
IVV +NK+D + PE + ++ D L E D PVI SAL + N
Sbjct: 128 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNP 186
Query: 1094 KARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147
K R+G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 187 KTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246
Query: 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIG 1203
+K +V I+ G + K + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 1204 STICDP 1209
+ P
Sbjct: 302 QVLAKP 307
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 50/247 (20%)
Query: 72 VTIMGHVDHGKTSL---LDYI---RKTNVVFSEAG-----------GITQHIGAYNVVTN 114
V +GHVDHGKT+L L Y+ NV + G GIT + T
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 73
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP IV
Sbjct: 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 133
Query: 175 -INKIDKLDIN--LDRIK---QDLISEQVIPEEYGGASPFISISA-----------KTGV 217
+NK+D +D LD ++ +DL+++ P G P I SA KT
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFP---GDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 218 GINKLLENI---------SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268
G N+ ++ I + + ++ P P + V + G+G VAT I+ G
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTIT----GRGTVATGRIERGK 246
Query: 269 LRCSDIV 275
++ D V
Sbjct: 247 VKVGDEV 253
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation Factor
Tu (Ef-Tu) In Complex With The Gtp Analogue Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And
Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A
Cryo-Em Map. This File Contains The 30s Subunit And The
Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 92.0 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 29/306 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKN 977
+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAALTFVTAA----ENPNVEVKDYGDIDKAPEERARGITINTAH 67
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 1038 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 1093
IVV +NK+D + PE + ++ D L E D PVI SAL + N
Sbjct: 128 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNP 186
Query: 1094 KARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147
K R+G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 187 KTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246
Query: 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIG 1203
+K +V I+ G + K + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 1204 STICDP 1209
+ P
Sbjct: 302 QVLAKP 307
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 75/247 (30%), Positives = 109/247 (44%), Gaps = 50/247 (20%)
Query: 72 VTIMGHVDHGKTSL---LDYI---RKTNVVFSEAG-----------GITQHIGAYNVVTN 114
V +GHVDHGKT+L L ++ NV + G GIT + T
Sbjct: 14 VGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 73
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP IV
Sbjct: 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 133
Query: 175 -INKIDKLDIN--LDRIK---QDLISEQVIPEEYGGASPFISISA-----------KTGV 217
+NK+D +D LD ++ +DL+++ P G P I SA KT
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFP---GDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 218 GINKLLENI---------SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268
G N+ ++ I + + ++ P P + V + G+G VAT I+ G
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTIT----GRGTVATGRIERGK 246
Query: 269 LRCSDIV 275
++ D V
Sbjct: 247 VKVGDEV 253
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 91.3 bits (225), Expect = 4e-18, Method: Composition-based stats.
Identities = 88/306 (28%), Positives = 144/306 (47%), Gaps = 29/306 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKN 977
+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAH 67
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 1038 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 1093
IVV +NK+D + PE + ++ D L E D PVI SAL ++N
Sbjct: 128 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNP 186
Query: 1094 KARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147
K ++G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 187 KTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246
Query: 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIG 1203
+K +V I+ G + K + + + R + E ++GD V L+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGLLLRGVSREEVERG 301
Query: 1204 STICDP 1209
+ P
Sbjct: 302 QVLAKP 307
Score = 73.6 bits (179), Expect = 8e-13, Method: Composition-based stats.
Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 50/247 (20%)
Query: 72 VTIMGHVDHGKTSL---LDYI---RKTNVVFSEAG-----------GITQHIGAYNVVTN 114
V +GHVDHGKT+L L Y+ NV + G GIT + T
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 73
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP IV
Sbjct: 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 133
Query: 175 -INKIDKLDIN--LDRIK---QDLISEQVIPEEYGGASPFISISA-----------KTGV 217
+NK+D +D LD ++ +DL+++ P G P I SA KT
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFP---GDEVPVIRGSALLALEEMHKNPKTKR 190
Query: 218 GINKLLENI---------SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268
G N+ ++ I + + ++ P P + V + G+G VAT I+ G
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTIT----GRGTVATGRIERGK 246
Query: 269 LRCSDIV 275
++ D V
Sbjct: 247 VKVGDEV 253
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 91.3 bits (225), Expect = 4e-18, Method: Composition-based stats.
Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 29/306 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKN 977
+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAALTYVTAA----ENPNVEVKDYGDIDKAPEERARGITINTAH 67
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 1038 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 1093
IVV +NK+D + PE + ++ D L E D PVI SAL + N
Sbjct: 128 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNP 186
Query: 1094 KARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147
K R+G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 187 KTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246
Query: 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIG 1203
+K +V I+ G + + + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLAPETRRTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 1204 STICDP 1209
+ P
Sbjct: 302 QVLAKP 307
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 56/289 (19%)
Query: 72 VTIMGHVDHGKTSL---LDYI---RKTNVVFSEAG-----------GITQHIGAYNVVTN 114
V +GHVDHGKT+L L Y+ NV + G GIT + T
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 73
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP IV
Sbjct: 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 133
Query: 175 -INKIDKLDIN--LDRIK---QDLISEQVIPEEYGGASPFISISA-----------KTGV 217
+NK+D +D LD ++ +DL+++ P G P I SA KT
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFP---GDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 218 GINKLLENI---------SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268
G N+ ++ I + + ++ P P + V + G+G VAT I+ G
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTIT----GRGTVATGRIERGK 246
Query: 269 LRCSDIV-VAGASYGRIRSMLN--ENGKNILE---AGPSIPVEIQGLTK 311
++ D V + G + R+++ E + L+ AG ++ V ++G+++
Sbjct: 247 VKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSR 295
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 91.3 bits (225), Expect = 4e-18, Method: Composition-based stats.
Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 29/306 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKN 977
+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAH 67
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 1038 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 1093
IVV +NK+D + PE + ++ D L E D PVI SAL + N
Sbjct: 128 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNP 186
Query: 1094 KARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147
K R+G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 187 KTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246
Query: 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIG 1203
+K +V I+ G + + + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLAPETRRTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 1204 STICDP 1209
+ P
Sbjct: 302 QVLAKP 307
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 56/289 (19%)
Query: 72 VTIMGHVDHGKTSL---LDYI---RKTNVVFSEAG-----------GITQHIGAYNVVTN 114
V +GHVDHGKT+L L Y+ NV + G GIT + T
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 73
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP IV
Sbjct: 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 133
Query: 175 -INKIDKLDIN--LDRIK---QDLISEQVIPEEYGGASPFISISA-----------KTGV 217
+NK+D +D LD ++ +DL+++ P G P I SA KT
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFP---GDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 218 GINKLLENI---------SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268
G N+ ++ I + + ++ P P + V + G+G VAT I+ G
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTIT----GRGTVATGRIERGK 246
Query: 269 LRCSDIV-VAGASYGRIRSMLN--ENGKNILE---AGPSIPVEIQGLTK 311
++ D V + G + R+++ E + L+ AG ++ V ++G+++
Sbjct: 247 VKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSR 295
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And
Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And
Trna (Part 3 Of 4)
Length = 406
Score = 91.3 bits (225), Expect = 4e-18, Method: Composition-based stats.
Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 29/306 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKN 977
+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 13 VNVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAH 68
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 69 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 128
Query: 1038 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 1093
IVV +NK+D + PE + ++ D L E D PVI SAL + N
Sbjct: 129 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNP 187
Query: 1094 KARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147
K R+G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 188 KTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 247
Query: 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIG 1203
+K +V I+ G + + + + + R + E ++GD VL+ G+ EE+ G
Sbjct: 248 VKVGDEVEIV-GLAPETRRTVVTGVE----MHRKTLQEGIAGDNVGVLLRGVSREEVERG 302
Query: 1204 STICDP 1209
+ P
Sbjct: 303 QVLAKP 308
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 56/289 (19%)
Query: 72 VTIMGHVDHGKTSL---LDYI---RKTNVVFSEAG-----------GITQHIGAYNVVTN 114
V +GHVDHGKT+L L Y+ NV + G GIT + T
Sbjct: 15 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 74
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP IV
Sbjct: 75 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 134
Query: 175 -INKIDKLDIN--LDRIK---QDLISEQVIPEEYGGASPFISISA-----------KTGV 217
+NK+D +D LD ++ +DL+++ P G P I SA KT
Sbjct: 135 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFP---GDEVPVIRGSALLALEQMHRNPKTRR 191
Query: 218 GINKLLENI---------SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268
G N+ ++ I + + ++ P P + V + G+G VAT I+ G
Sbjct: 192 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTIT----GRGTVATGRIERGK 247
Query: 269 LRCSDIV-VAGASYGRIRSMLN--ENGKNILE---AGPSIPVEIQGLTK 311
++ D V + G + R+++ E + L+ AG ++ V ++G+++
Sbjct: 248 VKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSR 296
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into Cryo-
Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 90.9 bits (224), Expect = 4e-18, Method: Composition-based stats.
Identities = 88/306 (28%), Positives = 144/306 (47%), Gaps = 29/306 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKN 977
+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAH 67
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 1038 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 1093
IVV +NK+D + PE + ++ D L E D PVI SAL ++N
Sbjct: 128 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNP 186
Query: 1094 KARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147
K ++G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 187 KTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246
Query: 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIG 1203
+K +V I+ G + K + + + R + E ++GD V L+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGLLLRGVSREEVERG 301
Query: 1204 STICDP 1209
+ P
Sbjct: 302 QVLAKP 307
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 50/247 (20%)
Query: 72 VTIMGHVDHGKTSL---LDYI---RKTNVVFSEAG-----------GITQHIGAYNVVTN 114
V +GHVDHGKT+L L Y+ NV + G GIT + T
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 73
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP IV
Sbjct: 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 133
Query: 175 -INKIDKLDIN--LDRIK---QDLISEQVIPEEYGGASPFISISA-----------KTGV 217
+NK+D +D LD ++ +DL+++ P G P I SA KT
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFP---GDEVPVIRGSALLALEEMHKNPKTKR 190
Query: 218 GINKLLENI---------SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268
G N+ ++ I + + ++ P P + V + G+G VAT I+ G
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTIT----GRGTVATGRIERGK 246
Query: 269 LRCSDIV 275
++ D V
Sbjct: 247 VKVGDEV 253
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 90.9 bits (224), Expect = 5e-18, Method: Composition-based stats.
Identities = 88/306 (28%), Positives = 144/306 (47%), Gaps = 29/306 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKN 977
+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAALTFVTAA----ENPNVEVKDYGDIDKAPEERARGITINTAH 67
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
E + +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 1038 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 1093
IVV +NK+D + PE + ++ D L E D PVI SAL ++N
Sbjct: 128 VPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNP 186
Query: 1094 KARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147
K ++G + L +AI +Y+P + + P + + + + G + GRI G+
Sbjct: 187 KTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246
Query: 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIG 1203
+K +V I+ G + K + + + R + E ++GD V L+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGLLLRGVSREEVERG 301
Query: 1204 STICDP 1209
+ P
Sbjct: 302 QVLAKP 307
Score = 72.0 bits (175), Expect = 3e-12, Method: Composition-based stats.
Identities = 74/247 (29%), Positives = 105/247 (42%), Gaps = 50/247 (20%)
Query: 72 VTIMGHVDHGKTSLL-----------------DYIRKTNVVFSEAGGITQHIGAYNVVTN 114
V +GHVDHGKT+L DY A GIT + T
Sbjct: 14 VGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 73
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP IV
Sbjct: 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 133
Query: 175 -INKIDKLDIN--LDRIK---QDLISEQVIPEEYGGASPFISISA-----------KTGV 217
+NK+D +D LD ++ +DL+++ P G P I SA KT
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFP---GDEVPVIRGSALLALEEMHKNPKTKR 190
Query: 218 GINKLLENI---------SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268
G N+ ++ I + + ++ P P + V + G+G VAT I+ G
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTIT----GRGTVATGRIERGK 246
Query: 269 LRCSDIV 275
++ D V
Sbjct: 247 VKVGDEV 253
>pdb|1D1N|A Chain A, Solution Structure Of The Fmet-Trnafmet Binding Domain Of
Becillus Stearothermophillus Translation Initiation
Factor If2
Length = 99
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 55/71 (77%)
Query: 469 KENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKD 528
+E ++G AE+RQ V+KV IAGCY+ +G I RDSK+R++R +++ GE+DSLKR+KD
Sbjct: 2 EEKVIGQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKD 61
Query: 529 NVKEVKAGFEC 539
+V+EV G+EC
Sbjct: 62 DVREVAQGYEC 72
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 11/169 (6%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR------IMDSNEIEKERGITIFSKNCS 979
AII+H D GKTTL + LL G + ++ AR D +E+ERGI++ +
Sbjct: 35 AIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQ 94
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
Y +N++DTPGH DF + R+L+ VD+ L++IDA +G QTR + ++
Sbjct: 95 FPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMRAT 153
Query: 1040 PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
P++ VNK+DR P +D D+ L + +P+ S+ G
Sbjct: 154 PVMTFVNKMDREALHP---LDVMADIEQHLQIECAPMTWPIGMGSSFKG 199
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 28/147 (19%)
Query: 73 TIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS--------------- 117
I+ H D GKT+L + + AG + A + ++ +
Sbjct: 35 AIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQ 94
Query: 118 -------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
+ LDTPGH+ F+ R D ++V+ A GV QTR+ + ++ P
Sbjct: 95 FPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATP 154
Query: 171 LIVAINKIDK-----LDINLDRIKQDL 192
++ +NK+D+ LD+ D I+Q L
Sbjct: 155 VMTFVNKMDREALHPLDVMAD-IEQHL 180
>pdb|1Z9B|A Chain A, Solution Structure Of The C1-Subdomain Of Bacillus
Stearothermophilus Translation Initiation Factor If2
Length = 135
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 5/112 (4%)
Query: 330 EIGLFRQGKFRDVKLSKQKLHKT----ENMFNDINKEKVKNLLIIIKTDVYGSREVLTES 385
E L +G R V L +Q+ KT +++F I + ++K L +I+K DV GS E L +
Sbjct: 2 EFELGTRGSSR-VDLQEQRSVKTRVSLDDLFEQIKQGEMKELNLIVKADVQGSVEALVAA 60
Query: 386 LKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQ 437
L+ + + V++++IH AVG I ESDI+LA AS AI+IGFNVR DA+ ++ A+
Sbjct: 61 LQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVIGFNVRPDANAKRAAE 112
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 926 AIIAHVDHGKTTLIDHLL------RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS 979
AII+H D GKTTL + LL + +GT + + D E+EK+RGI++ +
Sbjct: 17 AIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTSVXQ 76
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
Y IN++DTPGHADF + R L+ VD+ L +IDA +G P+T + +L
Sbjct: 77 FPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRT-IKLXEVCRLRHT 135
Query: 1040 PI-VVVNKIDRSNARP 1054
PI +NK DR + RP
Sbjct: 136 PIXTFINKXDR-DTRP 150
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 22/130 (16%)
Query: 73 TIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS--------------- 117
I+ H D GKT+L + + AG I A + ++
Sbjct: 17 AIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTSVXQ 76
Query: 118 -------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
I LDTPGH FT R D + V+ A GV P+T + ++ P
Sbjct: 77 FPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLRHTP 136
Query: 171 LIVAINKIDK 180
+ INK D+
Sbjct: 137 IXTFINKXDR 146
>pdb|3HJW|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
pdb|3HJY|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
Length = 327
Score = 83.2 bits (204), Expect = 1e-15, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 90/196 (45%), Gaps = 37/196 (18%)
Query: 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNY 719
+I GV+ LDKP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+
Sbjct: 36 HIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQA 95
Query: 720 LSEADKYYEAIIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMY 778
L A K Y A++HL GD+ E KII +++ F G+I Q PP+
Sbjct: 96 LLPAGKEYVALMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLR 136
Query: 779 SALKYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSED 838
SA+K + + R+ GTYIR L
Sbjct: 137 SAVKRR-----------------LRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHH 179
Query: 839 IGKMLGCGAHLKYLRR 854
IG LG GAH+ LRR
Sbjct: 180 IGLALGVGAHMSELRR 195
>pdb|3MQK|A Chain A, Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Containing
Aca Trinucleotide
Length = 328
Score = 83.2 bits (204), Expect = 1e-15, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 90/196 (45%), Gaps = 37/196 (18%)
Query: 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNY 719
+I GV+ LDKP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+
Sbjct: 36 HIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQA 95
Query: 720 LSEADKYYEAIIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMY 778
L A K Y A++HL GD+ E KII +++ F G+I Q PP+
Sbjct: 96 LLPAGKEYVALMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLR 136
Query: 779 SALKYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSED 838
SA+K + + R+ GTYIR L
Sbjct: 137 SAVKRR-----------------LRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHH 179
Query: 839 IGKMLGCGAHLKYLRR 854
IG LG GAH+ LRR
Sbjct: 180 IGLALGVGAHMSELRR 195
>pdb|3LWO|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRU
pdb|3LWP|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRDU
pdb|3LWQ|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
3MU
pdb|3LWR|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
4SU
pdb|3LWV|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
2'- Deoxyuridine
Length = 340
Score = 83.2 bits (204), Expect = 1e-15, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 90/196 (45%), Gaps = 37/196 (18%)
Query: 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNY 719
+I GV+ LDKP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+
Sbjct: 43 HIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQA 102
Query: 720 LSEADKYYEAIIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMY 778
L A K Y A++HL GD+ E KII +++ F G+I Q PP+
Sbjct: 103 LLPAGKEYVALMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLR 143
Query: 779 SALKYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSED 838
SA+K + + R+ GTYIR L
Sbjct: 144 SAVKRR-----------------LRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHH 186
Query: 839 IGKMLGCGAHLKYLRR 854
IG LG GAH+ LRR
Sbjct: 187 IGLALGVGAHMSELRR 202
>pdb|2HVY|A Chain A, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS
FURIOSUS
pdb|3HAX|A Chain A, Crystal Structure Of A Substrate-Bound Gar1-Minus HACA RNP
FROM Pyrococcus Furiosus
pdb|3HAY|A Chain A, Crystal Structure Of A Substrate-Bound Full HACA RNP FROM
Pyrococcus Furiosus
Length = 346
Score = 83.2 bits (204), Expect = 1e-15, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 90/196 (45%), Gaps = 37/196 (18%)
Query: 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNY 719
+I GV+ LDKP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+
Sbjct: 43 HIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQA 102
Query: 720 LSEADKYYEAIIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMY 778
L A K Y A++HL GD+ E KII +++ F G+I Q PP+
Sbjct: 103 LLPAGKEYVALMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLR 143
Query: 779 SALKYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSED 838
SA+K + + R+ GTYIR L
Sbjct: 144 SAVKRR-----------------LRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHH 186
Query: 839 IGKMLGCGAHLKYLRR 854
IG LG GAH+ LRR
Sbjct: 187 IGLALGVGAHMSELRR 202
>pdb|2EY4|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
pdb|2EY4|B Chain B, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
Length = 333
Score = 82.8 bits (203), Expect = 1e-15, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 90/196 (45%), Gaps = 37/196 (18%)
Query: 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNY 719
+I GV+ LDKP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+
Sbjct: 43 HIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQA 102
Query: 720 LSEADKYYEAIIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMY 778
L A K Y A++HL GD+ E KII +++ F G+I Q PP+
Sbjct: 103 LLPAGKEYVALMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLR 143
Query: 779 SALKYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSED 838
SA+K + + R+ GTYIR L
Sbjct: 144 SAVKRR-----------------LRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHH 186
Query: 839 IGKMLGCGAHLKYLRR 854
IG LG GAH+ LRR
Sbjct: 187 IGLALGVGAHMSELRR 202
>pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5
Nop10 Complex
Length = 357
Score = 81.6 bits (200), Expect = 3e-15, Method: Composition-based stats.
Identities = 61/205 (29%), Positives = 88/205 (42%), Gaps = 35/205 (17%)
Query: 650 CMQFHIKKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLC 709
C + K I +GV+++DKP G +S+ +K +LN K G+ GTLDP TG+LP+
Sbjct: 53 CNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVA 112
Query: 710 FGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHG 769
ATK K Y ++HL + S E I ++ F G
Sbjct: 113 LERATKTIPMWHIPPKEYVCLMHL------------------HRDASEEDILRVFKEFTG 154
Query: 770 KISQIPPMYSALKYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKG 829
+I Q PP+ +A+K + + R+ C G
Sbjct: 155 RIYQRPPLKAAVKRR-----------------LRIRKIHELELLDKDGKDVLFRVKCQSG 197
Query: 830 TYIRVLSEDIGKMLGCGAHLKYLRR 854
TYIR L EDIG+ LG AH++ LRR
Sbjct: 198 TYIRKLCEDIGEALGTSAHMQELRR 222
>pdb|2AUS|C Chain C, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
pdb|2AUS|A Chain A, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
Length = 334
Score = 81.3 bits (199), Expect = 4e-15, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 35/195 (17%)
Query: 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNY 719
+I +GV+ LDKP G +S+ + IK +LN +K G+ GTLDP +G+LP+ AT+
Sbjct: 43 HIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQA 102
Query: 720 LSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYS 779
L A K Y A++HL + ++P + I ++ F G+I Q PP+ S
Sbjct: 103 LLPAGKEYVALMHL----------------HGDVPE--DKIRAVMKEFEGEIIQRPPLRS 144
Query: 780 ALKYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDI 839
A+K + + R+ GTYIR L I
Sbjct: 145 AVKRR-----------------LRTRKVYYIEILEIDGRDVLFRVGVEAGTYIRSLIHHI 187
Query: 840 GKMLGCGAHLKYLRR 854
G LG GAH+ LRR
Sbjct: 188 GLALGVGAHMAELRR 202
>pdb|2RFK|A Chain A, Substrate Rna Positioning In The Archaeal HACA
Ribonucleoprotein Complex
Length = 334
Score = 80.1 bits (196), Expect = 9e-15, Method: Composition-based stats.
Identities = 63/196 (32%), Positives = 89/196 (45%), Gaps = 37/196 (18%)
Query: 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNY 719
+I GV+ LDKP G +S+ + IK +LN +K G+ GTL P +G+LP+ +AT+
Sbjct: 39 HIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLAPKVSGVLPVALEKATRVVQA 98
Query: 720 LSEADKYYEAIIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMY 778
L A K Y A++HL GD+ E KII +++ F G+I Q PP+
Sbjct: 99 LLPAGKEYVALMHL-----HGDVPEDKII--------------QVMKEFEGEIIQRPPLR 139
Query: 779 SALKYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSED 838
SA+K + + R+ GTYIR L
Sbjct: 140 SAVKRR-----------------LRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHH 182
Query: 839 IGKMLGCGAHLKYLRR 854
IG LG GAH+ LRR
Sbjct: 183 IGLALGVGAHMSELRR 198
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 926 AIIAHVDHGKTTLIDHLL------RQSGTFR-KNQNINARIMDSNEIEKERGITIFSKNC 978
AII+H D GKTT+ + +L + +GT + + N +A+ D E+EK+RGI+I +
Sbjct: 17 AIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAK-SDWMEMEKQRGISITTSVM 75
Query: 979 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 1038
Y+ +N++DTPGH DF + R L+ VD L++IDA +G +TR + + +L
Sbjct: 76 QFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLM-EVTRLRD 134
Query: 1039 KPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV----IYTSALHGYANENS 1093
PI+ +NK+DR P ++D + CA + +P+ ++ H Y +E
Sbjct: 135 TPILTFMNKLDRDIRDPMELLDEVENELKIGCAP---ITWPIGCGKLFKGVYHLYKDETY 191
Query: 1094 KARQG 1098
+ G
Sbjct: 192 LYQSG 196
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
+ LDTPGHE F+ R D ++V+ A GV +TR+ + ++ P++ +NK
Sbjct: 84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNK 143
Query: 178 IDK 180
+D+
Sbjct: 144 LDR 146
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em Map
Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In Complex
With The Guanosine Triphosphatase Release Factor 3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 926 AIIAHVDHGKTTLIDHLL------RQSGTFR-KNQNINARIMDSNEIEKERGITIFSKNC 978
AII+H D GKTT+ + +L + +GT + + N +A+ D E+EK+RGI+I +
Sbjct: 17 AIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAK-SDWMEMEKQRGISITTSVM 75
Query: 979 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF 1038
Y+ +N++DTPGH DF + R L+ VD L++IDA +G +TR + + +L
Sbjct: 76 QFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLM-EVTRLRD 134
Query: 1039 KPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV----IYTSALHGYANENS 1093
PI+ +NK+DR P ++D + CA + +P+ ++ H Y +E
Sbjct: 135 TPILTFMNKLDRDIRDPMELLDEVENELKIGCAP---ITWPIGCGKLFKGVYHLYKDETY 191
Query: 1094 KARQG 1098
+ G
Sbjct: 192 LYQSG 196
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
+ LDTPGHE F+ R D ++V+ A GV +TR+ + ++ P++ +NK
Sbjct: 84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNK 143
Query: 178 IDK 180
+D+
Sbjct: 144 LDR 146
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
Length = 397
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 121/270 (44%), Gaps = 18/270 (6%)
Query: 928 IAHVDHGKTTL---IDHLLRQSG--TFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
I HVDHGKTTL I +L + G F+K + I D+ E+ RGITI + +
Sbjct: 9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEI-----DNAPEERARGITINAAHVEYST 63
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
D PGHAD+ + + +D +L++ A +GPMPQTR A ++G + +V
Sbjct: 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVV 123
Query: 1043 V-VNKID--RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGN 1099
V VNK D + + E V +L + E+ P+I SAL + + +
Sbjct: 124 VYVNKADAVQDSEMVELVELEIRELLTEFGYKGEET--PIIVGSALCALEQRDPELGLKS 181
Query: 1100 MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 1159
+ L +A+ Y+PV + P L + S+ G + G + G +K + +
Sbjct: 182 VQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLG- 240
Query: 1160 PDDKPNKAKINQIRVF-KGLDRVLVNEALS 1188
K + + I +F K LDR + L
Sbjct: 241 -HSKNIRTVVTGIEMFHKSLDRAEAGDNLG 269
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 101/236 (42%), Gaps = 41/236 (17%)
Query: 72 VTIMGHVDHGKTSLLDYIRK----------------TNVVFSEAGGIT---QHIGAYNVV 112
V +GHVDHGKT+L I K N A GIT H+ Y+
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHV-EYSTA 64
Query: 113 TNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-L 171
H + T D PGH + G D +LVVAA+DG MPQTRE + A+ GV +
Sbjct: 65 ARHYAHT--DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHV 122
Query: 172 IVAINKIDKL-DINLDRIKQDLISEQVIPEEYGG-ASPFISISAKTGV----------GI 219
+V +NK D + D + + + I E + Y G +P I SA + +
Sbjct: 123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSV 182
Query: 220 NKLLENIS--LQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSD 273
KLL+ + + +L+ P P + V G+G V T ++ G L+ D
Sbjct: 183 QKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIP----GRGTVVTGTLERGILKKGD 234
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 138/301 (45%), Gaps = 31/301 (10%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCSIEYNG 984
I HVDHGKTTL + + K AR +D+ EK RGITI + + +
Sbjct: 302 IGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPT 358
Query: 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV- 1043
+D PGHAD+ + + +D +L++ A +GPMPQTR ++G I+V
Sbjct: 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVF 418
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENSKARQG 1098
+NK D + +++ +L + Q DF P++ SAL A E +
Sbjct: 419 LNKCDMVDDE--ELLELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGDAEWEA 471
Query: 1099 NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 1158
++ L + Y+P + + P L I + S G + GR+ G IK ++V I+
Sbjct: 472 KILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 531
Query: 1159 GPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGSTICDPS--KP 1212
+ + K+ + +F R L++E +G+ VL+ GI EEI G + P KP
Sbjct: 532 IKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKP 585
Query: 1213 N 1213
+
Sbjct: 586 H 586
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 87/191 (45%), Gaps = 40/191 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI---------------------TQHIGAYN 110
V +GHVDHGKT+L I T V+ GG T H+ Y+
Sbjct: 299 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHV-EYD 355
Query: 111 VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
T H +D PGH + GA D +LVVAA DG MPQTRE I + GVP
Sbjct: 356 TPTRH--YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 413
Query: 171 -LIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+IV +NK D +L ++ ++L+S+ P G +P + SA + L
Sbjct: 414 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSA-----LKALEG 465
Query: 225 NISLQAEILEL 235
+ +A+ILEL
Sbjct: 466 DAEWEAKILEL 476
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 135/303 (44%), Gaps = 35/303 (11%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCSIEYNG 984
I HVDHGKTTL + + K AR +D+ EK RGITI + + +
Sbjct: 302 IGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPT 358
Query: 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV- 1043
+D PGHAD+ + + +D +L++ A +GPMPQTR ++G I+V
Sbjct: 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVF 418
Query: 1044 VNKIDRSNARPEWVVDATF--DLFDKLCATEEQLDF-----PVIYTSALHGYANENSKAR 1096
+NK D + + +L Q DF P++ SAL A E
Sbjct: 419 LNKCDMVDDEELLELVEMEVRELL-------SQYDFPGDDTPIVRGSALK--ALEGDAEW 469
Query: 1097 QGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++V I
Sbjct: 470 EAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 529
Query: 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGD--IVLITGI--EEICIGSTICDPS-- 1210
+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 530 VGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 583
Query: 1211 KPN 1213
KP+
Sbjct: 584 KPH 586
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 87/191 (45%), Gaps = 40/191 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI---------------------TQHIGAYN 110
V +GHVDHGKT+L I T V+ GG T H+ Y+
Sbjct: 299 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHV-EYD 355
Query: 111 VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
T H +D PGH + GA D +LVVAA DG MPQTRE I + GVP
Sbjct: 356 TPTRH--YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 413
Query: 171 -LIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+IV +NK D +L ++ ++L+S+ P G +P + SA + L
Sbjct: 414 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSA-----LKALEG 465
Query: 225 NISLQAEILEL 235
+ +A+ILEL
Sbjct: 466 DAEWEAKILEL 476
>pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 400
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 32/195 (16%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I GV+ LDKP SS+ + IK +L +K G++GTLDP TG L +C AT+
Sbjct: 57 ISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQ 116
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
A K Y I+ L + K++ S+E N G + Q PP+ SA
Sbjct: 117 QGAGKEYVCIVRL----------HDALKDEKDLGRSLE-------NLTGALFQRPPLISA 159
Query: 781 LKYKGIPLYKYARSGXXXXXXXXXXXXXXXXXXXXXXPYLTLRIHCSKGTYIRVLSEDIG 840
+K + + + S C GTY+R L +G
Sbjct: 160 VK-RQLRVRTIYESNLIEFDNKRNLG--------------VFWASCEAGTYMRTLCVHLG 204
Query: 841 KMLGCGAHLKYLRRI 855
+LG G H++ LRR+
Sbjct: 205 MLLGVGGHMQELRRV 219
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 70.5 bits (171), Expect = 8e-12, Method: Composition-based stats.
Identities = 67/235 (28%), Positives = 106/235 (45%), Gaps = 15/235 (6%)
Query: 923 IKSAIIAHVDHGKTTL---IDHLLRQSG--TFRKNQNINARIMDSNEIEKERGITIFSKN 977
+ I HVDHGKTTL I +L + G F+K + I D+ E+ RGITI + +
Sbjct: 15 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEI-----DNAPEERARGITINAAH 69
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
D PGHAD+ + +D +L++ A +GP PQTR A ++G
Sbjct: 70 VEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIG 129
Query: 1038 FKPIVV-VNKID--RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK 1094
+ +VV VNK D + + E V +L + E+ P+I SAL + +
Sbjct: 130 VEHVVVYVNKADAVQDSEXVELVELEIRELLTEFGYKGEET--PIIVGSALCALEQRDPE 187
Query: 1095 ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIK 1149
++ L +A+ Y+PV + P L + S+ G + G + G +K
Sbjct: 188 LGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILK 242
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 69/236 (29%), Positives = 99/236 (41%), Gaps = 41/236 (17%)
Query: 72 VTIMGHVDHGKTSLLDYIRKT----------------NVVFSEAGGIT---QHIGAYNVV 112
V +GHVDHGKT+L I K N A GIT H+ Y+
Sbjct: 17 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHV-EYSTA 75
Query: 113 TNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-L 171
H + T D PGH + G D +LVVAA+DG PQTRE + A+ GV +
Sbjct: 76 ARHYAHT--DCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGVEHV 133
Query: 172 IVAINKIDKL-DINLDRIKQDLISEQVIPEEYGG-ASPFISISAKTGV----------GI 219
+V +NK D + D + + I E + Y G +P I SA + +
Sbjct: 134 VVYVNKADAVQDSEXVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSV 193
Query: 220 NKLLENIS--LQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSD 273
KLL+ + + +L+ P P + V G+G V T ++ G L+ D
Sbjct: 194 QKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIP----GRGTVVTGTLERGILKKGD 245
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 104/232 (44%), Gaps = 45/232 (19%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI-------TQHIGAYNVVTNHGSITFLDTP 124
V +GHVDHGKT+L I T V+ GG T H+ Y+ T H +D P
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARGITINTSHV-EYDTPTRH--YAHVDCP 68
Query: 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKID---- 179
GH + GA D +LVVAA DG MPQTRE I + GVP +IV +NK D
Sbjct: 69 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD 128
Query: 180 -KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKA- 237
+L ++ ++L+S+ P G +P + SA + L + +A+ILEL
Sbjct: 129 EELLELVEMEVRELLSQYDFP---GDDTPIVRGSA-----LKALEGDAEWEAKILELAGF 180
Query: 238 --------------PVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIV 275
P P + V S G+G V T ++ G ++ + V
Sbjct: 181 LDSYIPEPERAIDKPFLLPIEDVFSIS----GRGTVVTGRVERGIIKVGEEV 228
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 79/303 (26%), Positives = 131/303 (43%), Gaps = 39/303 (12%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
+ I HVDHGKTTL + ++ RGITI + + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAAI--------------TTVLAKTYGGAARGITINTSHVEYDT 57
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
+D PGHAD+ + + +D +L++ A +GPMPQTR ++G I+
Sbjct: 58 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYII 117
Query: 1043 V-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENSKAR 1096
V +NK D + ++ +L + Q DF P++ SAL A E
Sbjct: 118 VFLNKCDMVDDEEL--LELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGDAEW 170
Query: 1097 QGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++V I
Sbjct: 171 EAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 230
Query: 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIGSTICDPS-- 1210
+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 231 VGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 284
Query: 1211 KPN 1213
KP+
Sbjct: 285 KPH 287
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 85/306 (27%), Positives = 138/306 (45%), Gaps = 31/306 (10%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCS 979
+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 4 VNVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 60
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 61 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 120
Query: 1040 PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENS 1093
I+V +NK D + ++ +L + Q DF P++ SAL A E
Sbjct: 121 YIIVFLNKCDMVDDEEL--LELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGD 173
Query: 1094 KARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++
Sbjct: 174 AEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEE 233
Query: 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIGSTICDP 1209
V I+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 234 VEIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 287
Query: 1210 S--KPN 1213
KP+
Sbjct: 288 GTIKPH 293
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 73/246 (29%), Positives = 104/246 (42%), Gaps = 59/246 (23%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI---------------------TQHIGAYN 110
V +GHVDHGKT+L I T V+ GG T H+ Y+
Sbjct: 6 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHV-EYD 62
Query: 111 VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
T H +D PGH + GA D +LVVAA DG MPQTRE I + GVP
Sbjct: 63 TPTRH--YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 120
Query: 171 -LIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+IV +NK D +L ++ ++L+S+ P G +P + SA + L
Sbjct: 121 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSA-----LKALEG 172
Query: 225 NISLQAEILELKA---------------PVTTPAKGVIIESRLDKGKGPVATVLIQSGTL 269
+ +A+ILEL P P + V S G+G V T ++ G +
Sbjct: 173 DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSIS----GRGTVVTGRVERGII 228
Query: 270 RCSDIV 275
+ + V
Sbjct: 229 KVGEEV 234
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 85/306 (27%), Positives = 138/306 (45%), Gaps = 31/306 (10%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCS 979
+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 13 VNVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 69
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 70 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 129
Query: 1040 PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENS 1093
I+V +NK D + ++ +L + Q DF P++ SAL A E
Sbjct: 130 YIIVFLNKCDMVDDEEL--LELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGD 182
Query: 1094 KARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++
Sbjct: 183 AEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEE 242
Query: 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIGSTICDP 1209
V I+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 243 VEIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 296
Query: 1210 S--KPN 1213
KP+
Sbjct: 297 GTIKPH 302
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 73/246 (29%), Positives = 104/246 (42%), Gaps = 59/246 (23%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI---------------------TQHIGAYN 110
V +GHVDHGKT+L I T V+ GG T H+ Y+
Sbjct: 15 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHV-EYD 71
Query: 111 VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
T H +D PGH + GA D +LVVAA DG MPQTRE I + GVP
Sbjct: 72 TPTRH--YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 129
Query: 171 -LIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+IV +NK D +L ++ ++L+S+ P G +P + SA + L
Sbjct: 130 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSA-----LKALEG 181
Query: 225 NISLQAEILELKA---------------PVTTPAKGVIIESRLDKGKGPVATVLIQSGTL 269
+ +A+ILEL P P + V S G+G V T ++ G +
Sbjct: 182 DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSIS----GRGTVVTGRVERGII 237
Query: 270 RCSDIV 275
+ + V
Sbjct: 238 KVGEEV 243
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 85/306 (27%), Positives = 138/306 (45%), Gaps = 31/306 (10%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCS 979
+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 68
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 69 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 128
Query: 1040 PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENS 1093
I+V +NK D + ++ +L + Q DF P++ SAL A E
Sbjct: 129 YIIVFLNKCDMVDDEEL--LELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGD 181
Query: 1094 KARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++
Sbjct: 182 AEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEE 241
Query: 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIGSTICDP 1209
V I+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 242 VEIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 295
Query: 1210 S--KPN 1213
KP+
Sbjct: 296 GTIKPH 301
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 73/246 (29%), Positives = 104/246 (42%), Gaps = 59/246 (23%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI---------------------TQHIGAYN 110
V +GHVDHGKT+L I T V+ GG T H+ Y+
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHV-EYD 70
Query: 111 VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
T H +D PGH + GA D +LVVAA DG MPQTRE I + GVP
Sbjct: 71 TPTRH--YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 128
Query: 171 -LIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+IV +NK D +L ++ ++L+S+ P G +P + SA + L
Sbjct: 129 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSA-----LKALEG 180
Query: 225 NISLQAEILELKA---------------PVTTPAKGVIIESRLDKGKGPVATVLIQSGTL 269
+ +A+ILEL P P + V S G+G V T ++ G +
Sbjct: 181 DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSIS----GRGTVVTGRVERGII 236
Query: 270 RCSDIV 275
+ + V
Sbjct: 237 KVGEEV 242
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 29/154 (18%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
I AH+D GKTT + +L +G RI + T F K+
Sbjct: 11 GIAAHIDAGKTTTTERILYYTG----------RIAVT---------TCFWKDH------- 44
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I N
Sbjct: 45 RINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFAN 104
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
K+D++ A W+V T ++L A + P+
Sbjct: 105 KMDKTGAD-LWLVIRTMQ--ERLGARPVVMQLPI 135
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 1111 VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKIN 1170
V +H D N PL + Y+G++ R+ SG + S V K K ++
Sbjct: 266 VEIHPD-PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVA 320
Query: 1171 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFM 1230
++ R V E +GD+ + G++E G T+ P + + +I+ P I+
Sbjct: 321 RLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI-LESIEVPEPVIDVA 379
Query: 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 1290
+ A +E ++ L + + RV+ + +SG GELHL I+++
Sbjct: 380 IEPKTKADQE-------KLSQALARLAEEDPTFRVSTHPETGQTI-ISGMGELHLEIIVD 431
Query: 1291 NMRRE-GYELSVSRPRVIFK 1309
++RE + +V +P+V ++
Sbjct: 432 RLKREFKVDANVGKPQVAYR 451
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ I H+D GKT+ + I T I I +DTPGH FT
Sbjct: 10 IGIAAHIDAGKTTTTERILY----------YTGRIAVTTCFWKDHRINIIDTPGHVDFTI 59
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
R +V D ++V + GV PQ+ A+ VP I NK+DK +L
Sbjct: 60 EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADL 113
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 85/306 (27%), Positives = 138/306 (45%), Gaps = 31/306 (10%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCS 979
+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 13 VNVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 69
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 70 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 129
Query: 1040 PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENS 1093
I+V +NK D + ++ +L + Q DF P++ SAL A E
Sbjct: 130 YIIVFLNKCDMVDDEEL--LELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGD 182
Query: 1094 KARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++
Sbjct: 183 AEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEE 242
Query: 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIGSTICDP 1209
V I+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 243 VEIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 296
Query: 1210 S--KPN 1213
KP+
Sbjct: 297 GTIKPH 302
Score = 64.3 bits (155), Expect = 5e-10, Method: Composition-based stats.
Identities = 73/246 (29%), Positives = 104/246 (42%), Gaps = 59/246 (23%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI---------------------TQHIGAYN 110
V +GHVDHGKT+L I T V+ GG T H+ Y+
Sbjct: 15 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHV-EYD 71
Query: 111 VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
T H +D PGH + GA D +LVVAA DG MPQTRE I + GVP
Sbjct: 72 TPTRH--YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 129
Query: 171 -LIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+IV +NK D +L ++ ++L+S+ P G +P + SA + L
Sbjct: 130 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSA-----LKALEG 181
Query: 225 NISLQAEILELKA---------------PVTTPAKGVIIESRLDKGKGPVATVLIQSGTL 269
+ +A+ILEL P P + V S G+G V T ++ G +
Sbjct: 182 DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSIS----GRGTVVTGRVERGII 237
Query: 270 RCSDIV 275
+ + V
Sbjct: 238 KVGEEV 243
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em Map
Of An Ef-Tu Ternary Complex (Gdp And Kirromycin) Bound To
E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map Of
Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 85/306 (27%), Positives = 138/306 (45%), Gaps = 31/306 (10%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCS 979
+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 68
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 69 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 128
Query: 1040 PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENS 1093
I+V +NK D + ++ +L + Q DF P++ SAL A E
Sbjct: 129 YIIVFLNKCDMVDDEEL--LELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGD 181
Query: 1094 KARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++
Sbjct: 182 AEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEE 241
Query: 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIGSTICDP 1209
V I+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 242 VEIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 295
Query: 1210 S--KPN 1213
KP+
Sbjct: 296 GTIKPH 301
Score = 64.3 bits (155), Expect = 5e-10, Method: Composition-based stats.
Identities = 73/246 (29%), Positives = 104/246 (42%), Gaps = 59/246 (23%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI---------------------TQHIGAYN 110
V +GHVDHGKT+L I T V+ GG T H+ Y+
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHV-EYD 70
Query: 111 VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
T H +D PGH + GA D +LVVAA DG MPQTRE I + GVP
Sbjct: 71 TPTRH--YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 128
Query: 171 -LIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+IV +NK D +L ++ ++L+S+ P G +P + SA + L
Sbjct: 129 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSA-----LKALEG 180
Query: 225 NISLQAEILELKA---------------PVTTPAKGVIIESRLDKGKGPVATVLIQSGTL 269
+ +A+ILEL P P + V S G+G V T ++ G +
Sbjct: 181 DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSIS----GRGTVVTGRVERGII 236
Query: 270 RCSDIV 275
+ + V
Sbjct: 237 KVGEEV 242
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 85/306 (27%), Positives = 138/306 (45%), Gaps = 31/306 (10%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI---MDSNEIEKERGITIFSKNCS 979
+ I HVDHGKTTL + + K AR +D+ EK RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 68
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
+ +D PGHAD+ + + +D +L++ A +GPMPQTR ++G
Sbjct: 69 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 128
Query: 1040 PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYANENS 1093
I+V +NK D + ++ +L + Q DF P++ SAL A E
Sbjct: 129 YIIVFLNKCDMVDDEEL--LELVEMEVRELLS---QYDFPGDDTPIVRGSALK--ALEGD 181
Query: 1094 KARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153
+ ++ L + Y+P + + P L I + S G + GR+ G IK ++
Sbjct: 182 AEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEE 241
Query: 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EEICIGSTICDP 1209
V I+ + + K+ + +F R L++E +G+ VL+ GI EEI G + P
Sbjct: 242 VEIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 295
Query: 1210 S--KPN 1213
KP+
Sbjct: 296 GTIKPH 301
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 73/246 (29%), Positives = 104/246 (42%), Gaps = 59/246 (23%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI---------------------TQHIGAYN 110
V +GHVDHGKT+L I T V+ GG T H+ Y+
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHV-EYD 70
Query: 111 VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
T H +D PGH + GA D +LVVAA DG MPQTRE I + GVP
Sbjct: 71 TPTRH--YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 128
Query: 171 -LIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+IV +NK D +L ++ ++L+S+ P G +P + SA + L
Sbjct: 129 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSA-----LKALEG 180
Query: 225 NISLQAEILELKA---------------PVTTPAKGVIIESRLDKGKGPVATVLIQSGTL 269
+ +A+ILEL P P + V S G+G V T ++ G +
Sbjct: 181 DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSIS----GRGTVVTGRVERGII 236
Query: 270 RCSDIV 275
+ + V
Sbjct: 237 KVGEEV 242
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 77/264 (29%), Positives = 115/264 (43%), Gaps = 39/264 (14%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTF--------------RKNQNIN-ARIMDSNEIEKERGI 971
+I HVDHGK+TL+ HLL + G R ++ A I+D + E+ERGI
Sbjct: 14 VIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGI 73
Query: 972 TIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP------- 1024
TI E IID PGH DF + S D +L++ A +G
Sbjct: 74 TIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEG 133
Query: 1025 QTRFVTRKALKLGFKPIVV-VNKIDRSNA-----RPEWVVDATFDLFDKLCATEEQLDFP 1078
QTR A +G + I+V VNK+D + R E+VV L +++ P
Sbjct: 134 QTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKI--P 191
Query: 1079 VIYTSALHGYANENSKARQGNM-----IPLFEAILKYVPVHKDNSNNPLQLQIISLEYSS 1133
I SA G +N R NM L EA+ + P K + PL++ + ++
Sbjct: 192 FIPVSAWKG---DNLIERSPNMPWYNGPTLVEALDQLQPPAKP-VDKPLRIPVQNVYSIP 247
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIM 1157
G + +GR+ +G ++ VV M
Sbjct: 248 GAGTVPVGRVETGVLRVGDKVVFM 271
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 77/297 (25%), Positives = 123/297 (41%), Gaps = 58/297 (19%)
Query: 72 VTIMGHVDHGKTSL-------LDYIR---------------KTNVVFS---------EAG 100
+ ++GHVDHGK++L L YI K + F+
Sbjct: 12 LVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERER 71
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP----- 155
GIT + T T +D PGH F GA D +LVV+A G
Sbjct: 72 GITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMST 131
Query: 156 --QTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGAS------ 206
QTRE + A+ G+ +IVA+NK+D D+N D+ + + + V+ + G
Sbjct: 132 EGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVV-SVLKKFMKGLGYQVDKI 190
Query: 207 PFISISAKTGVGINKLLENI------SLQAEILELK---APVTTPAKGVIIESRLDKGKG 257
PFI +SA G + + N+ +L + +L+ PV P + + G G
Sbjct: 191 PFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIPGAG 250
Query: 258 PVATVLIQSGTLRCSDIVV--AGASYGRIRSM-LNENGKNILEAGPSIPVEIQGLTK 311
V +++G LR D VV G +RS+ ++ E G +I ++G++K
Sbjct: 251 TVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSK 307
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha
Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha
Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha
Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha
Complex
Length = 437
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 77/264 (29%), Positives = 115/264 (43%), Gaps = 39/264 (14%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTF--------------RKNQNIN-ARIMDSNEIEKERGI 971
+I HVDHGK+TL+ HLL + G R ++ A I+D + E+ERGI
Sbjct: 11 VIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGI 70
Query: 972 TIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP------- 1024
TI E IID PGH DF + S D +L++ A +G
Sbjct: 71 TIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEG 130
Query: 1025 QTRFVTRKALKLGFKPIVV-VNKIDRSNA-----RPEWVVDATFDLFDKLCATEEQLDFP 1078
QTR A +G + I+V VNK+D + R E+VV L +++ P
Sbjct: 131 QTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKI--P 188
Query: 1079 VIYTSALHGYANENSKARQGNM-----IPLFEAILKYVPVHKDNSNNPLQLQIISLEYSS 1133
I SA G +N R NM L EA+ + P K + PL++ + ++
Sbjct: 189 FIPVSAWKG---DNLIERSPNMPWYNGPTLVEALDQLQPPAKP-VDKPLRIPVQNVYSIP 244
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIM 1157
G + +GR+ +G ++ VV M
Sbjct: 245 GAGTVPVGRVETGVLRVGDKVVFM 268
Score = 62.8 bits (151), Expect = 2e-09, Method: Composition-based stats.
Identities = 77/297 (25%), Positives = 123/297 (41%), Gaps = 58/297 (19%)
Query: 72 VTIMGHVDHGKTSL-------LDYIR---------------KTNVVFS---------EAG 100
+ ++GHVDHGK++L L YI K + F+
Sbjct: 9 LVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERER 68
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP----- 155
GIT + T T +D PGH F GA D +LVV+A G
Sbjct: 69 GITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMST 128
Query: 156 --QTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGAS------ 206
QTRE + A+ G+ +IVA+NK+D D+N D+ + + + V+ + G
Sbjct: 129 EGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVV-SVLKKFMKGLGYQVDKI 187
Query: 207 PFISISAKTGVGINKLLENI------SLQAEILELK---APVTTPAKGVIIESRLDKGKG 257
PFI +SA G + + N+ +L + +L+ PV P + + G G
Sbjct: 188 PFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIPGAG 247
Query: 258 PVATVLIQSGTLRCSDIVV--AGASYGRIRSM-LNENGKNILEAGPSIPVEIQGLTK 311
V +++G LR D VV G +RS+ ++ E G +I ++G++K
Sbjct: 248 TVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSK 304
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1-Alpha In Complex With Magnesium And Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1-Alpha In Complex With Magnesium And Gdp
Length = 435
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 134/323 (41%), Gaps = 51/323 (15%)
Query: 927 IIAHVDHGKTTLIDHLLRQSG---------------TFRKNQNINARIMDSNEIEKERGI 971
+I HVDHGK+TL+ LL G K A ++D + E+ERG+
Sbjct: 11 VIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGV 70
Query: 972 TIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDA----------VEG 1021
TI E IID PGH DF + S D +L++ A VEG
Sbjct: 71 TINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEG 130
Query: 1022 PMPQTRFVTRKALKLGF-KPIVVVNKIDRSNA-----RPEWVVDATFDLFDKLCATEEQL 1075
QTR A +G + IV VNK+D + R + +VD ++
Sbjct: 131 ---QTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKV 187
Query: 1076 DF-PVIYTSALH-GYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSS 1133
F PV+ S + + +EN K G P E L + + + PL++ I + S
Sbjct: 188 RFVPVVAPSGDNITHKSENMKWYNG---PTLEEYLDQLELPPKPVDKPLRIPIQDVYSIS 244
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193
+G + +GR+ SG +K +V M K+ ++R + +++A GD +
Sbjct: 245 GVGTVPVGRVESGVLKVGDKIVFMPA-------GKVGEVRSIE-THHTKMDKAEPGDNIG 296
Query: 1194 --ITGIE--EICIGSTICDPSKP 1212
+ G+E +I G + P+ P
Sbjct: 297 FNVRGVEKKDIKRGDVVGHPNNP 319
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 122/294 (41%), Gaps = 56/294 (19%)
Query: 74 IMGHVDHGKTSLLD-------YIRKTNVVFSEAG------------------------GI 102
++GHVDHGK++L+ +I + V +E G+
Sbjct: 11 VIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGV 70
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------VMP 155
T ++ T T +D PGH F GA D +LVV+A G V
Sbjct: 71 TINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEG 130
Query: 156 QTREAIAHAKISGV-PLIVAINKIDKLDINLDRIKQDLISEQV--IPEEYG---GASPFI 209
QTRE I AK G+ LIVA+NK+D + D + I +QV YG F+
Sbjct: 131 QTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFV 190
Query: 210 SISAKTGVGINKLLENI------SLQAEILELK---APVTTPAKGVIIESRLDKGKGPVA 260
+ A +G I EN+ +L+ + +L+ PV P + I + G G V
Sbjct: 191 PVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVP 250
Query: 261 TVLIQSGTLRCSDIVV--AGASYGRIRSMLNENGK-NILEAGPSIPVEIQGLTK 311
++SG L+ D +V G +RS+ + K + E G +I ++G+ K
Sbjct: 251 VGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEK 304
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome
Length = 405
Score = 65.9 bits (159), Expect = 2e-10, Method: Composition-based stats.
Identities = 81/303 (26%), Positives = 140/303 (46%), Gaps = 29/303 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKN 977
+ I HVDHGKTTL L + +N N + D +I E+ RGITI + +
Sbjct: 12 VNVGTIGHVDHGKTTLTAALTYVAAA----ENRNVEVKDYGDIDKAREERARGITINTAH 67
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
E + +D GHAD+ + + +D +L++ A +G M QTR A ++G
Sbjct: 68 VEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVG 127
Query: 1038 FKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYA--NENS 1093
+ IVV +NK+D + R E + ++ D L E + D VI SAL ++N
Sbjct: 128 VRYIVVFMNKVDMVDDR-ELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALEEMHKNR 186
Query: 1094 KARQG------NMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147
K ++G + L +AI +Y+ + + +++ + + G + GRI G+
Sbjct: 187 KTKRGENEWVDKIWELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTVATGRIERGK 246
Query: 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIG 1203
+K +V I+ G + K + + + R + E ++GD V L+ G+ EE+ G
Sbjct: 247 VKVGDEVEIV-GLARETRKTVVTGVE----MHRKTLQEGIAGDNVGLLLRGVSREEVERG 301
Query: 1204 STI 1206
+
Sbjct: 302 QVL 304
Score = 57.0 bits (136), Expect = 9e-08, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 67/144 (46%), Gaps = 21/144 (14%)
Query: 72 VTIMGHVDHGKTSL---LDYI---RKTNVVFSEAG-----------GITQHIGAYNVVTN 114
V +GHVDHGKT+L L Y+ NV + G GIT + T
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARGITINTAHVEYETA 73
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ +D GH + GA D +LVV+A DG M QTRE I A+ GV IV
Sbjct: 74 KRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRYIVV 133
Query: 175 -INKIDKLDINLDRIKQDLISEQV 197
+NK+D +D DR DL+ +V
Sbjct: 134 FMNKVDMVD---DRELLDLVEMEV 154
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 33/182 (18%)
Query: 72 VTIMGHVDHGKTSLLDYIR-----------KTNVVFSEAGGITQHIGAYNVVTNHGS--- 117
+ ++GHVDHGKT+L+ I +TN+ E+ + + GS
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDE 70
Query: 118 ------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGVP 170
I+F+D PGHE A GA + D +LVVAA++ PQTRE I GV
Sbjct: 71 PKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVK 130
Query: 171 -LIVAINKIDKLDINLDRIKQDLISE-----QVIPEEYGGASPFISISAKTGVGINKLLE 224
LI+ NK+D + K++ +S+ Q + P I +SA + I+ L+E
Sbjct: 131 NLIIVQNKVDVVS------KEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIE 184
Query: 225 NI 226
I
Sbjct: 185 GI 186
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 37/253 (14%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQ----NINARIMDSNEIEKERGITIFSKNCSIE 981
++ HVDHGKTTL+ + +G + + N + +S + + K+C +
Sbjct: 12 GVVGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSD 68
Query: 982 YNGT---RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTR--FVTRKALK 1035
RI+ ID PGH + +++D +L++ A E P PQTR FV
Sbjct: 69 DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-- 126
Query: 1036 LGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK 1094
+G K +++V NK+D + F K E + P+I SALH
Sbjct: 127 IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE---NVPIIPVSALHKI------ 177
Query: 1095 ARQGNMIPLFEAILKYVPV-HKDNSNNPLQLQIISL-------EYSSYLGKIGIGRILSG 1146
N+ L E I +Y+ ++D S P+ L I S +++ G + G I+ G
Sbjct: 178 ----NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQG 233
Query: 1147 RIKSLQDVVIMNG 1159
K Q++ ++ G
Sbjct: 234 LFKVDQEIKVLPG 246
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 11/209 (5%)
Query: 74 IMGHVDHGKTSL---LDYIRKTN----VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH 126
I GH+DHGKT+L L I T+ + S+ GIT IG + IT +D PGH
Sbjct: 24 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83
Query: 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
A + D+ ++VV A +G QT E + +P+IV I K D + +
Sbjct: 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSD--NAGTE 141
Query: 187 RIKQ-DLISEQVIPEEYG-GASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAK 244
IK+ ++I + ++ + S I ISAKTG G+++L I E+ + K
Sbjct: 142 EIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFK 201
Query: 245 GVIIESRLDKGKGPVATVLIQSGTLRCSD 273
+ + KG G V T I G ++ D
Sbjct: 202 MPLDHAFPIKGAGTVVTGTINKGIVKVGD 230
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
I H+DHGKTTL L + T + + ++ +S ++RGITI + +
Sbjct: 23 GIFGHIDHGKTTLSKVLTEIAST-----SAHDKLPES----QKRGITIDIGFSAFKLENY 73
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT 1026
RI ++D PGHAD V ++D L+++DA EGP QT
Sbjct: 74 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQT 114
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 39/188 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIR-----------------KTNVVFSEAGGITQHIGAYNVVTN 114
+ ++GHVDHGKT+L+ I +TN+ E+ + +
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEAYVTEPSCKS 70
Query: 115 HGS---------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHA 164
GS I+F+D PGHE A GA + D +LVVAA++ PQTRE
Sbjct: 71 CGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL 130
Query: 165 KISGVP-LIVAINKIDKLDINLDRIKQDLISE-----QVIPEEYGGASPFISISAKTGVG 218
I GV LI+ NK+D + K++ +S+ Q + P I +SA +
Sbjct: 131 GIIGVKNLIIVQNKVDVVS------KEEALSQYRQIKQFTKGTWAENVPIIPVSALHKIN 184
Query: 219 INKLLENI 226
I+ L+E I
Sbjct: 185 IDSLIEGI 192
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 108/256 (42%), Gaps = 37/256 (14%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN--EIEKERGITIFSKNCSIEYN 983
++ HVDHGKTTL+ + + + I ++N E + + S +
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEAYVTEPSCKSC 71
Query: 984 GT--------RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTR--FVTRK 1032
G+ RI+ ID PGH + +++D +L++ A E P PQTR FV
Sbjct: 72 GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALG 131
Query: 1033 ALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANE 1091
+G K +++V NK+D + F K E + P+I SALH
Sbjct: 132 I--IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE---NVPIIPVSALHKI--- 183
Query: 1092 NSKARQGNMIPLFEAILKYVPV-HKDNSNNPLQLQIISL-------EYSSYLGKIGIGRI 1143
N+ L E I +Y+ ++D S P+ L I S +++ G + G I
Sbjct: 184 -------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSI 236
Query: 1144 LSGRIKSLQDVVIMNG 1159
+ G K Q++ ++ G
Sbjct: 237 IQGLFKVDQEIKVLPG 252
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus
Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNI--NARIMDSNEIEKERGITIFSKNCSIEYN 983
A++ H GKTTL + LL ++G + + D K T+ + + +
Sbjct: 13 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR 72
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
G R+ ++D PG+ DF GE+ L D L+ + A G T A +LG +VV
Sbjct: 73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVV 132
Query: 1044 VNKIDRSN 1051
V K+D+
Sbjct: 133 VTKLDKGG 140
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 25/223 (11%)
Query: 1093 SKARQGNMIPLFEAILKYVPVHKDN-SNNPLQLQIISLEYSSYLGKIGIGRILSGRIK-- 1149
S R+ ++PL E IL+ +P + + P ++ ++ ++G++ R+ GR+K
Sbjct: 254 SGEREIGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPG 313
Query: 1150 -SLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 1208
SLQ + + ++ + V G D + V EA +G ++ + E + G +
Sbjct: 314 DSLQS---------EAGQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQ 364
Query: 1209 PSKPNG--LPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVT 1266
KP +P + +P + + R G+ + R++ ++ + L++
Sbjct: 365 GEKPESEEVPFARLPDPNVPVALHPKGRTDEARLGEAL--RKL-------LEEDPSLKLE 415
Query: 1267 QNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFK 1309
+ + + + G GELHL E ++ G E+ S P+V ++
Sbjct: 416 RQEETGELL-LWGHGELHLATAKERLQDYGVEVEFSVPKVPYR 457
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 20/128 (15%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI------------------TQHIGAYNVVT 113
V ++GH GKT+L + + G + T G ++
Sbjct: 12 VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF 71
Query: 114 NHGSITFLDTPGHEAFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI 172
+ LD PG+ F RGA + D ++ V+A+ GV T A A+ G+P +
Sbjct: 72 RGHRVFLLDAPGYGDFVG-EIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM 130
Query: 173 VAINKIDK 180
V + K+DK
Sbjct: 131 VVVTKLDK 138
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 44/193 (22%)
Query: 72 VTIMGHVDHGKTSLLDYIR----------------------KTNVVFSEAGGITQHIGAY 109
+ ++GHVDHGKT+L+ I +TN+ E+ +
Sbjct: 12 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 71
Query: 110 NVVTNHGS---------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTRE 159
+ GS I+F+D PGHE A GA + D +LVVAA++ PQTRE
Sbjct: 72 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 131
Query: 160 AIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISE-----QVIPEEYGGASPFISISA 213
I GV LI+ NK+D + K++ +S+ Q + P I +SA
Sbjct: 132 HFVALGIIGVKNLIIVQNKVDVVS------KEEALSQYRQIKQFTKGTWAENVPIIPVSA 185
Query: 214 KTGVGINKLLENI 226
+ I+ L+E I
Sbjct: 186 LHKINIDSLIEGI 198
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 110/261 (42%), Gaps = 42/261 (16%)
Query: 926 AIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSN--EIEKERGITIFSKNC 978
++ HVDHGKTTL+ + + S ++ I ++N E + +
Sbjct: 13 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEP 72
Query: 979 SIEYNGT--------RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTR-- 1027
S + G+ RI+ ID PGH + +++D +L++ A E P PQTR
Sbjct: 73 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 132
Query: 1028 FVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALH 1086
FV +G K +++V NK+D + F K E + P+I SALH
Sbjct: 133 FVALGI--IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE---NVPIIPVSALH 187
Query: 1087 GYANENSKARQGNMIPLFEAILKYVPV-HKDNSNNPLQLQIISL-------EYSSYLGKI 1138
N+ L E I +Y+ ++D S P+ L I S +++ G +
Sbjct: 188 KI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGV 237
Query: 1139 GIGRILSGRIKSLQDVVIMNG 1159
G I+ G K Q++ ++ G
Sbjct: 238 IGGSIIQGLFKVDQEIKVLPG 258
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 44/193 (22%)
Query: 72 VTIMGHVDHGKTSLLDYIR----------------------KTNVVFSEAGGITQHIGAY 109
+ ++GHVDHGKT+L+ I +TN+ E+ +
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
Query: 110 NVVTNHGS---------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTRE 159
+ GS I+F+D PGHE A GA + D +LVVAA++ PQTRE
Sbjct: 71 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 130
Query: 160 AIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISE-----QVIPEEYGGASPFISISA 213
I GV LI+ NK+D + K++ +S+ Q + P I +SA
Sbjct: 131 HFVALGIIGVKNLIIVQNKVDVVS------KEEALSQYRQIKQFTKGTWAENVPIIPVSA 184
Query: 214 KTGVGINKLLENI 226
+ I+ L+E I
Sbjct: 185 LHKINIDSLIEGI 197
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 110/261 (42%), Gaps = 42/261 (16%)
Query: 926 AIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSN--EIEKERGITIFSKNC 978
++ HVDHGKTTL+ + + S ++ I ++N E + +
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEP 71
Query: 979 SIEYNGT--------RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTR-- 1027
S + G+ RI+ ID PGH + +++D +L++ A E P PQTR
Sbjct: 72 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 131
Query: 1028 FVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALH 1086
FV +G K +++V NK+D + F K E + P+I SALH
Sbjct: 132 FVALGI--IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE---NVPIIPVSALH 186
Query: 1087 GYANENSKARQGNMIPLFEAILKYVPV-HKDNSNNPLQLQIISL-------EYSSYLGKI 1138
N+ L E I +Y+ ++D S P+ L I S +++ G +
Sbjct: 187 KI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGV 236
Query: 1139 GIGRILSGRIKSLQDVVIMNG 1159
G I+ G K Q++ ++ G
Sbjct: 237 IGGSIIQGLFKVDQEIKVLPG 257
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 107/255 (41%), Gaps = 35/255 (13%)
Query: 926 AIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI 980
++ HVDHGKTTL L S R+ I D+ EI + +S +
Sbjct: 15 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRRCSNCGRYSTSPIC 73
Query: 981 EYNG------TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKA 1033
Y G R++ ID+PGH + S++D +L+I A E P PQTR
Sbjct: 74 PYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 133
Query: 1034 LKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANEN 1092
+G K I++ NKI+ + F K E + P+I SALHG
Sbjct: 134 QIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIKGTVAE---NAPIIPISALHG----- 185
Query: 1093 SKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII--------SLEYSSYLGKIGIGRIL 1144
N+ L +AI +++P K +SN P ++ ++ +G + G I+
Sbjct: 186 -----ANIDVLVKAIEEFIPTPKRDSNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIV 240
Query: 1145 SGRIKSLQDVVIMNG 1159
G++K ++ I G
Sbjct: 241 QGKLKVGDEIEIRPG 255
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 33/185 (17%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNV-VFSEA--GGITQHIGAYNV----VTNHGS------- 117
+ ++GHVDHGKT+L + SE GIT IG + +N G
Sbjct: 14 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPIC 73
Query: 118 ------------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHA 164
++F+D+PGHEA GA + D +LV+AA++ PQTRE +
Sbjct: 74 PYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 133
Query: 165 KISGVP-LIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221
+I G +I+A NKI+ +D L+ +Q ++ I +P I ISA G I+
Sbjct: 134 QIIGQKNIIIAQNKIELVDKEKALENYRQ---IKEFIKGTVAENAPIIPISALHGANIDV 190
Query: 222 LLENI 226
L++ I
Sbjct: 191 LVKAI 195
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 132/320 (41%), Gaps = 50/320 (15%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTF---------RKNQNIN------ARIMDSNEIEKERGI 971
I HVD GK+T+ ++ +G R+ + N + +D+N+ E+++G
Sbjct: 22 FIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGK 81
Query: 972 TIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP------- 1024
T+ E I+D PGH F + S D +L+I A +G
Sbjct: 82 TVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGG 141
Query: 1025 QTRFVTRKALKLGFKP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV---I 1080
QTR A G K IV++NK+D W + + +KL +++ F I
Sbjct: 142 QTREHAMLAKTAGVKHLIVLINKMDDPTVN--WSNERYEECKEKLVPFLKKVGFNPKKDI 199
Query: 1081 YTSALHGYANENSKARQGNMIPL-----FEAILKYVPVHKDNSNNPLQLQIISLEYSSYL 1135
+ G N K Q + P F L +P + + P++L I+ +Y +
Sbjct: 200 HFMPCSGLTGANLK-EQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVD-KYKD-M 256
Query: 1136 GKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKG---LDRVLVNEALSGDIV 1192
G + +G++ SG I Q +V+M PNK + + + D V E L +
Sbjct: 257 GTVVLGKLESGSIFKGQQLVMM------PNKHNVEVLGILSDDTETDFVAPGENLK---I 307
Query: 1193 LITGI--EEICIGSTICDPS 1210
+ GI EEI G +CDPS
Sbjct: 308 RLKGIEEEEILPGFILCDPS 327
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP----- 155
G T +G T T LD PGH++F GA D+ VLV++A G
Sbjct: 80 GKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK 139
Query: 156 --QTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP 199
QTRE AK +GV LIV INK+D +N + + E+++P
Sbjct: 140 GGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVP 186
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 39/185 (21%)
Query: 75 MGHVDHGKTSLLDYIRK--TNVVFSE-AGGITQHIGAYNV----VTNHGS---------- 117
+GHVDHGKT+L + T+ E GIT IG + N G
Sbjct: 16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYC 75
Query: 118 ---------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKIS 167
++F+D PGHEA GA + D +LV+AA++ PQTRE + +I
Sbjct: 76 GHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRPQTREHLXALQII 135
Query: 168 GVP-LIVAINKIDKLDI-----NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221
G +I+A NKI+ +D N +IK+ + E + E +P I ISA G I+
Sbjct: 136 GQKNIIIAQNKIELVDKEKALENYRQIKEFI--EGTVAEN----APIIPISALHGANIDV 189
Query: 222 LLENI 226
L++ I
Sbjct: 190 LVKAI 194
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 67/253 (26%), Positives = 103/253 (40%), Gaps = 35/253 (13%)
Query: 928 IAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
+ HVDHGKTTL L S R+ I D+ EI + +S + Y
Sbjct: 16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRRCPNCGRYSTSPVCPY 74
Query: 983 NG------TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALK 1035
G R++ ID PGH S+ D +L+I A E P PQTR
Sbjct: 75 CGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRPQTREHLXALQI 134
Query: 1036 LGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK 1094
+G K I++ NKI+ + F + E + P+I SALHG
Sbjct: 135 IGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAE---NAPIIPISALHG------- 184
Query: 1095 ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII-SLEYS-------SYLGKIGIGRILSG 1146
N+ L +AI ++P K + N P + ++ S + + +G + G I+ G
Sbjct: 185 ---ANIDVLVKAIEDFIPTPKRDPNKPPKXLVLRSFDVNKPGTPPEKLVGGVLGGSIVQG 241
Query: 1147 RIKSLQDVVIMNG 1159
++K ++ I G
Sbjct: 242 KLKVGDEIEIRPG 254
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 107/265 (40%), Gaps = 39/265 (14%)
Query: 923 IKSAIIAHVDHGKTTLIDHLL---------------RQSGTFRKNQNINARIMDSNEIEK 967
I +I HVD GK+T HL+ +++ K A ++D + E+
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAER 67
Query: 968 ERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP--- 1024
ERGITI E ++ +ID PGH DF + S D +L+I G
Sbjct: 68 ERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGI 127
Query: 1025 ----QTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLFDKLCATEEQLD 1076
QTR A LG + IV VNK+D +R + +V T + K+ + +
Sbjct: 128 SKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVP 187
Query: 1077 FPVI----------YTSALHGYANENSKARQGNM--IPLFEAILKYVPVHKDNSNNPLQL 1124
F I T+ Y + + G + L EAI + ++ PL+L
Sbjct: 188 FVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAI-DAIEQPSRPTDKPLRL 246
Query: 1125 QIISLEYSSYLGKIGIGRILSGRIK 1149
+ + +G + +GR+ +G IK
Sbjct: 247 PLQDVYKIGGIGTVPVGRVETGVIK 271
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP----- 155
GIT I + T +T +D PGH F G D +L++A G
Sbjct: 70 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK 129
Query: 156 --QTREAIAHAKISGV-PLIVAINKIDKLDINLDRIKQDLISE 195
QTRE A GV LIVA+NK+D + + R Q+++ E
Sbjct: 130 DGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF-QEIVKE 171
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 39/188 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNV-VFSEA--GGITQHIGAYNV----VTNHGS------- 117
+ ++GHVDHGKT+L + SE GIT IG + N G
Sbjct: 13 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72
Query: 118 ------------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHA 164
++F+D PGHEA GA + D +LV+AA++ PQTRE +
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132
Query: 165 KISGVP-LIVAINKIDKLDI-----NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218
+I G +I+A NKI+ +D N +IK+ + E + E +P I ISA G
Sbjct: 133 QIIGQKNIIIAQNKIELVDKEKALENYRQIKEFI--EGTVAEN----APIIPISALHGAN 186
Query: 219 INKLLENI 226
I+ L++ I
Sbjct: 187 IDVLVKAI 194
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 35/255 (13%)
Query: 926 AIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI 980
++ HVDHGKTTL L S R+ I D+ EI + +S +
Sbjct: 14 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRRCPNCGRYSTSPVC 72
Query: 981 EYNG------TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKA 1033
Y G R++ ID PGH + S++D +L+I A E P PQTR
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132
Query: 1034 LKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANEN 1092
+G K I++ NKI+ + E ++ + + + T + + P+I SALHG
Sbjct: 133 QIIGQKNIIIAQNKIELVDK--EKALENYRQIKEFIEGTVAE-NAPIIPISALHG----- 184
Query: 1093 SKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII--------SLEYSSYLGKIGIGRIL 1144
N+ L +AI ++P K + N P ++ ++ +G + G I+
Sbjct: 185 -----ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIV 239
Query: 1145 SGRIKSLQDVVIMNG 1159
G++K ++ I G
Sbjct: 240 QGKLKVGDEIEIRPG 254
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 39/188 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNV-VFSEA--GGITQHIGAYNV----VTNHGS------- 117
+ ++GHVDHGKT+L + SE GIT IG + N G
Sbjct: 13 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72
Query: 118 ------------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHA 164
++F+D PGHEA GA + D +LV+AA++ PQTRE +
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132
Query: 165 KISGVP-LIVAINKIDKLDI-----NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218
+I G +I+A NKI+ +D N +IK+ + E + E +P I ISA G
Sbjct: 133 QIIGQKNIIIAQNKIELVDKEKALENYRQIKEFI--EGTVAEN----APIIPISALHGAN 186
Query: 219 INKLLENI 226
I+ L++ I
Sbjct: 187 IDVLVKAI 194
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 35/255 (13%)
Query: 926 AIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI 980
++ HVDHGKTTL L S R+ I D+ EI + +S +
Sbjct: 14 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA-EIRRCPNCGRYSTSPVC 72
Query: 981 EYNG------TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKA 1033
Y G R++ ID PGH + S++D +L+I A E P PQTR
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132
Query: 1034 LKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANEN 1092
+G K I++ NKI+ + E ++ + + + T + + P+I SALHG
Sbjct: 133 QIIGQKNIIIAQNKIELVDK--EKALENYRQIKEFIEGTVAE-NAPIIPISALHG----- 184
Query: 1093 SKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII--------SLEYSSYLGKIGIGRIL 1144
N+ L +AI ++P K + N P ++ ++ +G + G I+
Sbjct: 185 -----ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLGGSIV 239
Query: 1145 SGRIKSLQDVVIMNG 1159
G++K ++ I G
Sbjct: 240 QGKLKVGDEIEIRPG 254
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form),
A Translational Gtpase Involved In Rna Quality Control
Pathways And Interacting With Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form),
A Translational Gtpase Involved In Rna Quality Control
Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 26/125 (20%)
Query: 918 NIYILIKSA-------IIAHVDHGKTTLIDHLL---------------RQSGTFRKNQNI 955
+I +KSA ++ HVD GK+TL+ LL R+S T K+
Sbjct: 22 DISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFK 81
Query: 956 NARIMDSNEIEKERGITIFSKNCSIEYNGTRIN--IIDTPGHADFGGEVERILSMVDNVL 1013
A IMD E+ERG+T+ C+ ++ R N I+D PGH DF +S D +
Sbjct: 82 FAWIMDQTNEERERGVTV--SICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAI 139
Query: 1014 LLIDA 1018
L +D
Sbjct: 140 LCVDC 144
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 41/165 (24%)
Query: 74 IMGHVDHGKTSLL----------------------DYIRKTNVVFS---------EAGGI 102
++GHVD GK++L+ + + K++ F+ G+
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 97
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP------- 155
T I + T+ + T +D PGH F G D+ +L V
Sbjct: 98 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG 157
Query: 156 QTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP 199
QT+E + A G+ LI+A+NK+D +D + R ++ I +++P
Sbjct: 158 QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE--IKSKLLP 200
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 26/125 (20%)
Query: 918 NIYILIKSA-------IIAHVDHGKTTLIDHLL---------------RQSGTFRKNQNI 955
+I +KSA ++ HVD GK+TL+ LL R+S T K+
Sbjct: 156 DISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFK 215
Query: 956 NARIMDSNEIEKERGITIFSKNCSIEYNGTRIN--IIDTPGHADFGGEVERILSMVDNVL 1013
A IMD E+ERG+T+ C+ ++ R N I+D PGH DF +S D +
Sbjct: 216 FAWIMDQTNEERERGVTV--SICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAI 273
Query: 1014 LLIDA 1018
L +D
Sbjct: 274 LCVDC 278
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 41/165 (24%)
Query: 74 IMGHVDHGKTSLL----------------------DYIRKTNVVFS---------EAGGI 102
++GHVD GK++L+ + + K++ F+ G+
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 231
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP------- 155
T I + T+ + T +D PGH F G D+ +L V
Sbjct: 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG 291
Query: 156 QTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP 199
QT+E + A G+ LI+A+NK+D +D + R ++ I +++P
Sbjct: 292 QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE--IKSKLLP 334
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 36/194 (18%)
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIA 162
T H+ Y+ T H +D PGH + GA D +LVVAA DG MPQTRE I
Sbjct: 6 TSHV-EYDTPTRH--YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 62
Query: 163 HAKISGVP-LIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTG 216
+ GVP +IV +NK D +L ++ ++L+S+ P G +P + SA
Sbjct: 63 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSA--- 116
Query: 217 VGINKLLENISLQAEILELKA---------------PVTTPAKGVIIESRLDKGKGPVAT 261
+ L + +A+ILEL P P + V S G+G V T
Sbjct: 117 --LKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSIS----GRGTVVT 170
Query: 262 VLIQSGTLRCSDIV 275
++ G ++ + V
Sbjct: 171 GRVERGIIKVGEEV 184
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 25/256 (9%)
Query: 970 GITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFV 1029
GITI + + + +D PGHAD+ + + +D +L++ A +GPMPQTR
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 1030 TRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTS 1083
++G I+V +NK D + ++ +L + Q DF P++ S
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEEL--LELVEMEVRELLS---QYDFPGDDTPIVRGS 115
Query: 1084 ALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRI 1143
AL A E + ++ L + Y+P + + P L I + S G + GR+
Sbjct: 116 ALK--ALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRV 173
Query: 1144 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EE 1199
G IK ++V I+ + + K+ + +F R L++E +G+ VL+ GI EE
Sbjct: 174 ERGIIKVGEEVEIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREE 227
Query: 1200 ICIGSTICDPS--KPN 1213
I G + P KP+
Sbjct: 228 IERGQVLAKPGTIKPH 243
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 36/194 (18%)
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIA 162
T H+ Y+ T H +D PGH + GA D +LVVAA DG MPQTRE I
Sbjct: 6 TSHV-EYDTPTRH--YAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 62
Query: 163 HAKISGVP-LIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTG 216
+ GVP +IV +NK D +L ++ ++L+S+ P G +P + SA
Sbjct: 63 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSA--- 116
Query: 217 VGINKLLENISLQAEILELKA---------------PVTTPAKGVIIESRLDKGKGPVAT 261
+ L + +A+ILEL P P + V S G+G V T
Sbjct: 117 --LKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSIS----GRGTVVT 170
Query: 262 VLIQSGTLRCSDIV 275
++ G ++ + V
Sbjct: 171 GRVERGIIKVGEEV 184
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 25/256 (9%)
Query: 970 GITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFV 1029
GITI + + + +D PGHAD+ + + +D +L++ A +GPMPQTR
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 1030 TRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-----PVIYTS 1083
++G I+V +NK D + ++ +L + Q DF P++ S
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEEL--LELVEMEVRELLS---QYDFPGDDTPIVRGS 115
Query: 1084 ALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRI 1143
AL A E + ++ L + Y+P + + P L I + S G + GR+
Sbjct: 116 ALK--ALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRV 173
Query: 1144 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDI--VLITGI--EE 1199
G IK ++V I+ + + K+ + +F R L++E +G+ VL+ GI EE
Sbjct: 174 ERGIIKVGEEVEIVGIKETQ--KSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREE 227
Query: 1200 ICIGSTICDPS--KPN 1213
I G + P KP+
Sbjct: 228 IERGQVLAKPGTIKPH 243
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 47/192 (24%)
Query: 72 VTIMGHVDHGKTSL-----------------------LDY----IRKTNVVFSEAGGITQ 104
+ ++GHVDHGKTSL L Y IRK + G T
Sbjct: 11 IGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKC----PQCGTYTT 66
Query: 105 HIGAYNVVTNHG---SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREA 160
N + ++F+D+PGHE A GA + D +LV+AA++ PQT+E
Sbjct: 67 KPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEH 126
Query: 161 IAHAKISGV-PLIVAINKIDKLD-----INLDRIKQDLISEQVIPEEYGGASPFISISAK 214
+ +I G+ +I+ NKID +D N ++IK+ + I E +P I ISA
Sbjct: 127 LMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKE--FVKGTIAEN----APIIPISAH 180
Query: 215 TGVGINKLLENI 226
I+ LL+ I
Sbjct: 181 HEANIDVLLKAI 192
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 926 AIIAHVDHGKTTLIDHLL-----RQSGTFRKNQNINARIMDSNEIEKERGITIFS----- 975
++ HVDHGKT+L L R S R+ +I D EI K ++
Sbjct: 12 GMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADC-EIRKCPQCGTYTTKPRC 70
Query: 976 KNCSIEYNG-TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTRKA 1033
NC E R++ +D+PGH + S++D +L+I A E P PQT+
Sbjct: 71 PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL 130
Query: 1034 LKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANEN 1092
LG I++V NKID + E + ++ + + P+I SA H
Sbjct: 131 EILGIDKIIIVQNKIDLVD---EKQAEENYEQIKEFVKGTIAENAPIIPISAHH------ 181
Query: 1093 SKARQGNMIPLFEAILKYVPVHKDNSN 1119
+ N+ L +AI ++P K + +
Sbjct: 182 ----EANIDVLLKAIQDFIPTPKRDPD 204
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 37/264 (14%)
Query: 927 IIAHVDHGKTTLIDHLL---------------RQSGTFRKNQNINARIMDSNEIEKERGI 971
I HVD GK+TL ++L R++ K + +DS E+E+G
Sbjct: 48 FIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGK 107
Query: 972 TIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP------- 1024
T+ E R +++D PGH + + S D +L+I A G
Sbjct: 108 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 167
Query: 1025 QTRFVTRKALKLGFKPIVVV-NKIDR-----SNARPEWVVDATFDLFDKLCATEEQLDFP 1078
QTR A G +VVV NK+D S R + VD ++ + D
Sbjct: 168 QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVK 227
Query: 1079 VIYTSALHGYANENSKAR-QGNMIPLFE--AILKYVP--VHKDNSNNPLQLQIISLEYSS 1133
+ SA Y +N K R ++ P ++ ++L+Y+ H + N + I+ +Y
Sbjct: 228 YMPVSA---YTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYKD 284
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIM 1157
LG I G+I +G IK +V++M
Sbjct: 285 -LGTILEGKIEAGSIKKNSNVLVM 307
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP----- 155
G T +G T H + LD PGH+ + GA DI VLV++A G
Sbjct: 106 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER 165
Query: 156 --QTREAIAHAKISGV-PLIVAINKIDKLDINL 185
QTRE A+ G+ L+V INK+D+ +
Sbjct: 166 GGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 26/125 (20%)
Query: 918 NIYILIKSA-------IIAHVDHGKTTLIDHLL---------------RQSGTFRKNQNI 955
+I +KSA ++ HVD GK+TL LL R+S T K+
Sbjct: 22 DISAFVKSALPHLSFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFK 81
Query: 956 NARIMDSNEIEKERGITIFSKNCSIEYNGTRIN--IIDTPGHADFGGEVERILSMVDNVL 1013
A I D E+ERG+T+ C+ ++ R N I+D PGH DF +S D +
Sbjct: 82 FAWIXDQTNEERERGVTV--SICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAI 139
Query: 1014 LLIDA 1018
L +D
Sbjct: 140 LCVDC 144
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP----- 155
G+T I + T+ + T +D PGH F G D +L V
Sbjct: 96 GVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFESGFDL 155
Query: 156 --QTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP 199
QT+E A G+ LI+A NK D +D + R ++ I +++P
Sbjct: 156 DGQTKEHXLLASSLGIHNLIIAXNKXDNVDWSQQRFEE--IKSKLLP 200
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 897 YLSDLLSKRFLHGQNLFLSDENIYILIKSAIIAHVDHGKTTLIDHLL------------- 943
+ SDL+S+ L +L ++ +VD GK+TLI LL
Sbjct: 3 HQSDLISEDIL----AYLGQHERKEXLRFLTCGNVDDGKSTLIGRLLHDSKXIYEDHLEA 58
Query: 944 -----RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT---RINIIDTPGH 995
++SGT + ++ A ++D + E+E+GITI + + Y T + I DTPGH
Sbjct: 59 ITRDSKKSGTTGDDVDL-ALLVDGLQAEREQGITI---DVAYRYFSTAKRKFIIADTPGH 114
Query: 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV-VNKID 1048
+ S D ++L+DA G QTR + A LG K IVV +NK D
Sbjct: 115 EQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKXD 168
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREA 160
GIT + T DTPGHE +T A GA D+ +++V A GV QTR
Sbjct: 89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRH 148
Query: 161 IAHAKISGVP-LIVAINKID 179
A + G+ ++VAINK D
Sbjct: 149 SYIASLLGIKHIVVAINKXD 168
>pdb|2CRV|A Chain A, Solution Structure Of C-Terminal Domain Of Mitochondrial
Translational Initiationfactor 2
Length = 120
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 473 LGLAEIRQVILVNKVSK---IAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDN 529
+G A I V + K +A C + +G + R K +++RN +IW G L SLK KD+
Sbjct: 10 IGEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDD 69
Query: 530 VKEVKAGFEC 539
+ +K G +C
Sbjct: 70 ISVIKTGMDC 79
>pdb|1JOS|A Chain A, Ribosome Binding Factor A(Rbfa)
Length = 128
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 538 ECERLSRIENQIQRDISEXXXXXXXXXXXXXXXXXXXXXXLDYSYAKIFFT-TFNKD-IS 595
E +R R+ +IQ++I+ D SYAKIF T F+ D ++
Sbjct: 4 EFKRSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMA 63
Query: 596 IKNILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGI 647
I+ + L KA YIR L K + + +P + F YD S+ M +S L+ +
Sbjct: 64 IEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNLVTNV 115
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 19/169 (11%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQH--IGAYNVVTNHGSITFLDTPG--- 125
V I+G + GK++LL+ + T V + S G T+ +G N+ N I FLDTPG
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYE 70
Query: 126 -------HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAH-AKISGVPLIVAINK 177
+ + + + D+++ ++ A +G P+ E + K P+IV INK
Sbjct: 71 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 130
Query: 178 IDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
IDK+ + + LI E I +++ + + ISA G +++L++ I
Sbjct: 131 IDKIGPAKNVL--PLIDE--IHKKHPELTEIVPISALKGANLDELVKTI 175
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 25/190 (13%)
Query: 926 AIIAHVDHGKTTLIDHLL--RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 983
AI+ + GK+TL+++LL + S K R++ I E I IF I Y
Sbjct: 13 AIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQI-IFLDTPGI-YE 70
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IV 1042
+ +++ GH+ ++ L D +L +IDA EG P+ + + +K KP IV
Sbjct: 71 PKKSDVL---GHS-MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIV 126
Query: 1043 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 1102
V+NKID+ L D++ +L ++ SAL G N+
Sbjct: 127 VINKIDKIGP-----AKNVLPLIDEIHKKHPELTE-IVPISALKG----------ANLDE 170
Query: 1103 LFEAILKYVP 1112
L + ILKY+P
Sbjct: 171 LVKTILKYLP 180
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 19/169 (11%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQH--IGAYNVVTNHGSITFLDTPG--- 125
V I+G + GK++LL+ + T V + S G T+ +G N+ N I FLDTPG
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYE 71
Query: 126 -------HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAH-AKISGVPLIVAINK 177
+ + + + D+++ ++ A +G P+ E + K P+IV INK
Sbjct: 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 131
Query: 178 IDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
IDK+ + + LI E I +++ + + ISA G +++L++ I
Sbjct: 132 IDKIGPAKNVL--PLIDE--IHKKHPELTEIVPISALKGANLDELVKTI 176
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 25/190 (13%)
Query: 926 AIIAHVDHGKTTLIDHLL--RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 983
AI+ + GK+TL+++LL + S K R++ I E I IF I Y
Sbjct: 14 AIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQI-IFLDTPGI-YE 71
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IV 1042
+ +++ GH+ ++ L D +L +IDA EG P+ + + +K KP IV
Sbjct: 72 PKKSDVL---GHS-MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIV 127
Query: 1043 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 1102
V+NKID+ L D++ +L ++ SAL G N+
Sbjct: 128 VINKIDKIGP-----AKNVLPLIDEIHKKHPELTE-IVPISALKG----------ANLDE 171
Query: 1103 LFEAILKYVP 1112
L + ILKY+P
Sbjct: 172 LVKTILKYLP 181
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For Its
Role In No-Go Decay
Length = 592
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 23/145 (15%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTF--RKNQNIN-------------ARIMDSNEIEKERGI 971
+ HVD GK+T++ ++ + G R Q ++ A ++D+ E E+ RG+
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGV 241
Query: 972 TIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP------- 1024
T+ + + E + I D PGH DF + S D +L++D+ +
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENG 301
Query: 1025 QTRFVTRKALKLGFKPIVV-VNKID 1048
QTR LG IVV VNK+D
Sbjct: 302 QTREHAYLLRALGISEIVVSVNKLD 326
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 41/162 (25%)
Query: 70 PIV--TIMGHVDHGKTSLLDYI---------RKTNVVFSEAGG-------------ITQH 105
P+V + GHVD GK+++L I R + +EA T+
Sbjct: 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEE 235
Query: 106 IGAYNVVTNHGSITFL---------DTPGHEAFTAMRARGAKVTDIVVLVVAA-----DD 151
A V + S TF D PGH F + GA D VLVV + +
Sbjct: 236 ERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFER 295
Query: 152 GVMP--QTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQ 190
G + QTRE + G+ ++V++NK+D + + DR ++
Sbjct: 296 GFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQE 337
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 38/169 (22%)
Query: 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGA----------YNVVTNHGSIT 119
P + I+G+ + GKTSL F+ G+TQ + Y + N+ I
Sbjct: 180 PSIGIVGYTNSGKTSL----------FNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM 229
Query: 120 FLDTPGH---------EAFTAMRARGAKVTDIVVLVVAADDG------VMPQTREAIAHA 164
+DT G +AF + AK +D ++LV+ + + + E +
Sbjct: 230 LVDTVGFIRGIPPQIVDAFFVTLSE-AKYSDALILVIDSTFSENLLIETLQSSFEILREI 288
Query: 165 KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISA 213
+SG P++V +NKIDK++ +L + K DL+ E++ E Y I ISA
Sbjct: 289 GVSGKPILVTLNKIDKINGDLYK-KLDLV-EKLSKELYSPIFDVIPISA 335
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 38/169 (22%)
Query: 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGA----------YNVVTNHGSIT 119
P + I+G+ + GKTSL F+ G+TQ + Y + N+ I
Sbjct: 180 PSIGIVGYTNSGKTSL----------FNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM 229
Query: 120 FLDTPGH---------EAFTAMRARGAKVTDIVVLVVAADDG------VMPQTREAIAHA 164
+DT +AF + AK +D ++LV+ + + + E +
Sbjct: 230 LVDTVSFIRGIPPQIVDAFFVTLSE-AKYSDALILVIDSTFSENLLIETLQSSFEILREI 288
Query: 165 KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISA 213
+SG P++V +NKIDK++ +L + K DL+ E++ E Y I ISA
Sbjct: 289 GVSGKPILVTLNKIDKINGDLYK-KLDLV-EKLSKELYSPIFDVIPISA 335
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 38/169 (22%)
Query: 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGA----------YNVVTNHGSIT 119
P + I+G+ + GKTSL F+ G+TQ + Y + N+ I
Sbjct: 180 PSIGIVGYTNSGKTSL----------FNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM 229
Query: 120 FLDT-------PGH--EAFTAMRARGAKVTDIVVLVVAADDG------VMPQTREAIAHA 164
+DT P +AF + AK +D ++LV+ + + + E +
Sbjct: 230 LVDTVPFIRGIPPQIVDAFFVTLSE-AKYSDALILVIDSTFSENLLIETLQSSFEILREI 288
Query: 165 KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISA 213
+SG P++V +NKIDK++ +L + K DL+ E++ E Y I ISA
Sbjct: 289 GVSGKPILVTLNKIDKINGDLYK-KLDLV-EKLSKELYSPIFDVIPISA 335
>pdb|1KKG|A Chain A, Nmr Structure Of Ribosome-Binding Factor A (Rbfa)
Length = 108
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 579 DYSYAKIFFTTFNK--DISIKNILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIEN 636
D +YAK++ T N + ++K + L +A +IR L K + + +P L FFYDNS+
Sbjct: 46 DLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 105
Query: 637 AM 638
M
Sbjct: 106 GM 107
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLIVAI 175
LDT GHE ++AMR + + + + V A ++ + RE I K S VP+++
Sbjct: 74 LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 133
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220
NK D L D Q + YG PFI SAKT G++
Sbjct: 134 NKCD-----LPSRTVDTKQAQDLARSYG--IPFIETSAKTRQGVD 171
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 74 IMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH------ 126
++G + GK+SL++ + + V+ S G T+ + N +DT G
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 259
Query: 127 ----EAFTAMRA-RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
E ++ +RA + +++V +V+ ++G++ Q + +A +G +++ +NK D +
Sbjct: 260 YETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 319
Query: 182 DINLDRIKQ 190
D + +K+
Sbjct: 320 DKDESTMKE 328
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Query: 70 PIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG--- 125
P+V I+G + GK+++ + I + + + G+T+ + + +DT G
Sbjct: 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 83
Query: 126 -HEAFTAMRARGAKVT----DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
E F A + A++ D+++ +V +GV E + P+++A+NK+D
Sbjct: 84 GDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDN 143
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
++ + D S G P+ IS G+G+ LL+ ++
Sbjct: 144 TEMRAN--IYDFYS-------LGFGEPY-PISGTHGLGLGDLLDAVA 180
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 32/176 (18%)
Query: 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG---- 125
P V I GH + GK++LL + + T+ I + +DTPG
Sbjct: 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDR 227
Query: 126 ---------HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAI-----AHAKISGVPL 171
+A A+R G ++++ + + E I H + +P
Sbjct: 228 PISERNEIEKQAILALRYLG----NLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPF 283
Query: 172 IVAINKIDKLD-INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+V INKID D N+ R+++ + E+ G +P I ISA G GI+ + E I
Sbjct: 284 LVVINKIDVADEENIKRLEK-FVKEK-------GLNP-IKISALKGTGIDLVKEEI 330
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 74 IMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH------ 126
++G + GK+SL++ + + V+ S G T+ + N +DT G
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKV 239
Query: 127 ----EAFTAMRA-RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
E ++ +RA + +++V +V+ ++G++ Q + +A +G +++ +NK D +
Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299
Query: 182 D 182
D
Sbjct: 300 D 300
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 19/167 (11%)
Query: 70 PIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG--- 125
P+V I+G + GK+++ + I + + + G+T+ + + +DT G
Sbjct: 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63
Query: 126 -HEAFTAMRARGAKVT----DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
E F A + A++ D+++ V +GV E + P+++A+NK+D
Sbjct: 64 GDEPFLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDN 123
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
+ + D S G P+ IS G+G+ LL+ ++
Sbjct: 124 TEXRAN--IYDFYS-------LGFGEPY-PISGTHGLGLGDLLDAVA 160
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.7 bits (86), Expect = 0.048, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT GHE ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 37.4 bits (85), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 141 DIVVLVVAADDGVMPQTREAIAH-----AKISGVPLIVAINKIDKLDINLDRIKQDLISE 195
D V+LVV MP+T I A+ + + ++ INK+D D + DL
Sbjct: 86 DQVILVVTVK---MPETSTYIIDKFLVLAEKNELETVMVINKMDLYD------EDDLRKV 136
Query: 196 QVIPEEYGGASPFISISAKTGVGINKLLE 224
+ + E Y G P + SAKTG+GI +L E
Sbjct: 137 RELEEIYSGLYPIVKTSAKTGMGIEELKE 165
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLIVAI 175
LDT G E ++AMR + + + + V A ++ + RE I K S VP+++
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220
NK D L D Q + YG PFI SAKT G++
Sbjct: 117 NKSD-----LPSRTVDTKQAQDLARSYG--IPFIETSAKTRQGVD 154
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLIVAI 175
LDT G E ++AMR + + + + V A ++ + RE I K S VP+++
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220
NK D L D Q + YG PFI SAKT G++
Sbjct: 117 NKSD-----LPSRTVDTKQAQDLARSYG--IPFIETSAKTRQGVD 154
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 35.8 bits (81), Expect = 0.21, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + RE I K S VP++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 173 VAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220
+ NK D L D Q + YG PFI SAKT G++
Sbjct: 114 LVGNKCD-----LPSRTVDTKQAQDLARSYG--IPFIETSAKTRQGVD 154
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLIVAI 175
LDT G E ++AMR + + + + V A ++ + RE I K S VP+++
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220
NK D L D Q + YG PFI SAKT G++
Sbjct: 117 NKSD-----LPSRTVDTKQAQDLARSYG--IPFIETSAKTRQGVD 154
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 17/161 (10%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ ++G+ + GKT+L + + + G+T T +T +D PG + T
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65
Query: 132 MRARGAKVTDIV----------VLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
+ ++ + I +L+ D + + G+P IVA+N +D
Sbjct: 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNXLDIA 125
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222
+ RI+ D +S ++ P I + + G GI L
Sbjct: 126 EKQNIRIEIDALSARL-------GCPVIPLVSTRGRGIEAL 159
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 35.4 bits (80), Expect = 0.26, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAGRTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 17/161 (10%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ ++G+ + GKT+L + + + G+T T +T +D PG + T
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65
Query: 132 MRARGAKVTDIV----------VLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
+ ++ + I +L+ D + + G+P IVA+N +D
Sbjct: 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIA 125
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222
+ RI+ D +S ++ P I + + G GI L
Sbjct: 126 EKQNIRIEIDALSARL-------GCPVIPLVSTRGRGIEAL 159
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 35.0 bits (79), Expect = 0.29, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 60 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 120 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 159
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 35.0 bits (79), Expect = 0.30, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADD----GVMPQTREAIAHAKIS-GVPLIVAI 175
LDT G E ++AMR + + + + V A ++ + RE I K S VP+++
Sbjct: 74 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
NK D L D + + YG PFI SAKT G+
Sbjct: 134 NKCD-----LPTRTVDTKQAHELAKSYG--IPFIETSAKTRQGV 170
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 35.0 bits (79), Expect = 0.31, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 974 FSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTRK 1032
++K C I+ R++I+DT G +FG E+ + + LL+ + G + R+
Sbjct: 42 YTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQ 101
Query: 1033 ALKLG----FKPIVVVNKIDRSNAR 1053
L++ F I++ NK D + R
Sbjct: 102 ILRVKDRDEFPMILIGNKADLDHQR 126
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 118 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 157
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 118 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 157
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 59 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 119 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 158
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 35.0 bits (79), Expect = 0.36, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 34.7 bits (78), Expect = 0.37, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 34.7 bits (78), Expect = 0.37, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
V ++G+ + GKT+L + + G+T T +T +D PG + T
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSLTT 65
Query: 132 MRARGAKVTDIV----------VLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
+ ++ + I +L+ D + + G+P +VA+N +D
Sbjct: 66 ISSQTSLDEQIACHYILSGDADMLINVVDASNLERNLYLTLQLLELGIPCVVALNMLDIA 125
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222
+ RI D ++ ++ P I + + G GI L
Sbjct: 126 EKQQVRIDIDALAARL-------GCPVIPLVSTRGRGIEAL 159
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 17/161 (10%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ ++G+ + GKT+L + + + G+T T +T +D PG + T
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65
Query: 132 MRARGAKVTDIV----------VLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
+ ++ + I +L+ D + + G+P IVA+N +D
Sbjct: 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIA 125
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222
+ RI+ D +S ++ P I + + G GI L
Sbjct: 126 EKQNIRIEIDALSARL-------GCPVIPLVSTRGRGIEAL 159
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 34.7 bits (78), Expect = 0.37, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob
Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob
Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob
Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob
Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob
Iron Iransporter In Apo Form
Length = 258
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 41/202 (20%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
++K A+ + GKT+L + L +GT + N G+T+ K
Sbjct: 5 MVKVALAGCPNVGKTSLFNAL---TGTKQYVANWP-------------GVTVEKKEGVFT 48
Query: 982 YNGTRINIIDTPGHADFGGEV--ERIL------SMVDNVLLLIDAVEGPMPQTRFVTRKA 1033
Y G IN+ID PG G E+I D V+L+ D+V Q+ ++ +
Sbjct: 49 YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEI 106
Query: 1034 LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENS 1093
L++ K I+ + ID + D ++ ++ L PV++TS++ G E
Sbjct: 107 LEMEKKVILAMTAIDEAKK-----TGMKIDRYE----LQKHLGIPVVFTSSVTGEGLEEL 157
Query: 1094 KAR-----QGNMIPLFEAILKY 1110
K + Q N I L IL Y
Sbjct: 158 KEKIVEYAQKNTI-LHRMILDY 178
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 21/123 (17%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS-------GVP 170
+ DT G E + +R +++V++ + D +P + E + I+ GVP
Sbjct: 60 LALWDTAGQEDYDRLRPLSYPDSNVVLICFSID---LPDSLENVQEKWIAEVLHFCQGVP 116
Query: 171 LIVAINKIDKLD--INLDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINK 221
+I+ K+D + +++++Q+ +Q + + G GA+ + SAKTG G+ +
Sbjct: 117 IILVGCKVDLRNDPQTIEQLRQE--GQQPVTSQEGQSVADQIGATGYYECSAKTGYGVRE 174
Query: 222 LLE 224
+ E
Sbjct: 175 VFE 177
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 34.7 bits (78), Expect = 0.43, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 35/183 (19%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
++K A+ + GKT+L + L +GT + N G+T+ K
Sbjct: 5 MVKVALAGCPNVGKTSLFNAL---TGTKQYVANW-------------PGVTVEKKEGVFT 48
Query: 982 YNGTRINIIDTPGHADFGGEV--ERIL------SMVDNVLLLIDAVEGPMPQTRFVTRKA 1033
Y G IN+ID PG G E+I D V+L+ D+V Q+ ++ +
Sbjct: 49 YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEI 106
Query: 1034 LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENS 1093
L++ K I+ + ID + D ++ ++ L PV++TS++ G E
Sbjct: 107 LEMEKKVILAMTAIDEAKK-----TGMKIDRYE----LQKHLGIPVVFTSSVTGEGLEEL 157
Query: 1094 KAR 1096
K +
Sbjct: 158 KEK 160
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 34.3 bits (77), Expect = 0.52, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 22/170 (12%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGIT---QHIGAYNVVTNHGSITFLDTPGHEA 128
+ I+G V GKT LL K F E T ++ V + DT G E
Sbjct: 9 LVIVGDVACGKTCLLIVFSKDQ--FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVPLIVAINKID-K 180
+ +R TD++++ + D P + E I VP+I+ NK D +
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 123
Query: 181 LDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLLE 224
D + R + E V PEE GA ++ SAKT G+ ++ E
Sbjct: 124 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 34.3 bits (77), Expect = 0.53, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKSDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 34.3 bits (77), Expect = 0.54, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 34.3 bits (77), Expect = 0.55, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 34.3 bits (77), Expect = 0.56, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 34.3 bits (77), Expect = 0.57, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKSDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 18/182 (9%)
Query: 72 VTIMGHVDHGKTSLLDYI-RKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
V I+G + GK++L + I K + S G T+ V + F+DT G +
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 242
Query: 131 AMRARGAKV------------TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKI 178
+ R + D+VV+V+ A G+ Q + + G +V NK
Sbjct: 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRXAGLXERRGRASVVVFNKW 302
Query: 179 DKLDINLDRIKQ--DLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELK 236
D + R + L E++ +Y SP I SA G I++ ++ +L K
Sbjct: 303 DLVVHREKRYDEFTKLFREKLYFIDY---SPLIFTSADKGWNIDRXIDAXNLAYASYTTK 359
Query: 237 AP 238
P
Sbjct: 360 VP 361
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 33.9 bits (76), Expect = 0.68, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ N+ D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNRCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 33.9 bits (76), Expect = 0.71, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 33.9 bits (76), Expect = 0.82, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKIS-GVPLI 172
+ LDT G E ++AMR + + + + V A ++ + Q RE I K S VP++
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 173 VAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+ NK D ++ R QDL YG P+I SAKT G+
Sbjct: 113 LVGNKCDLAARTVESRQAQDL------ARSYG--IPYIETSAKTRQGV 152
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 20/164 (12%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG----- 125
V I+G + GK+SL + ++K + V ++ G+T+ + V T+ G +DT G
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63
Query: 126 --HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI 183
+ R + ++V+ V + E + + G P+I+ K+D
Sbjct: 64 KWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVD---- 119
Query: 184 NLDRIKQDLISEQVIPEEYG-GASPFISISAKTGVGINKLLENI 226
D E + YG G I S++ G+ +LLE I
Sbjct: 120 -------DPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAI 156
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 970 GITIFSKNCSIEYNGTRINIIDTPG-HADFGGEVERILS-------MVDNVLLLIDAVEG 1021
G+T+ K EYNG + ++D PG ++ ++ I++ D V+ ++DA
Sbjct: 39 GVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT-- 96
Query: 1022 PMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 1052
+ + ++T + +++G ++ +NK+D + +
Sbjct: 97 ALERNLYLTLQLMEMGANLLLALNKMDLAKS 127
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 970 GITIFSKNCSIEYNGTRINIIDTPG-HADFGGEVERILS-------MVDNVLLLIDAVEG 1021
G+T+ K EYNG + ++D PG ++ ++ I++ D V+ ++DA
Sbjct: 35 GVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT-- 92
Query: 1022 PMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 1052
+ + ++T + +++G ++ +NK+D + +
Sbjct: 93 ALERNLYLTLQLMEMGANLLLALNKMDLAKS 123
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 970 GITIFSKNCSIEYNGTRINIIDTPG-HADFGGEVERILS-------MVDNVLLLIDAVEG 1021
G+T+ K EYNG + ++D PG ++ ++ I++ D V+ ++DA
Sbjct: 35 GVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT-- 92
Query: 1022 PMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 1052
+ + ++T + +++G ++ +NK+D + +
Sbjct: 93 ALERNLYLTLQLMEMGANLLLALNKMDLAKS 123
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s
Subunit
Length = 292
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 69/164 (42%), Gaps = 39/164 (23%)
Query: 926 AIIAHVDHGKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 983
AI+ + GK+TL++ LL Q S T RK Q RI+ I
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV------------------GIHTE 50
Query: 984 GTRINI-IDTPG-HADFGGEVERIL-----SMVDNVLLLIDAVEGP--MPQTRFVTRKAL 1034
G I +DTPG H + + R++ S + +V L+I VEG P V K L
Sbjct: 51 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNK-L 109
Query: 1035 KLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077
+ G P+++ VNK+D V DL L Q++F
Sbjct: 110 REGKAPVILAVNKVDN--------VQEKADLLPHLQFLASQMNF 145
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 31/193 (16%)
Query: 59 KNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGIT---QHIGAYNVVTNH 115
+N+ +S++R +V ++G GKT LL K F E T ++ V
Sbjct: 16 ENLYFQSMIRKKLV-VVGDGACGKTCLLIVFSKDE--FPEVYVPTVFENYVADIEVDGKQ 72
Query: 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SG 168
+ DT G E + +R TD++++ + D P + E I +
Sbjct: 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS---PDSLENIPEKWVPEVKHFCPN 129
Query: 169 VPLIVAINKID-----KLDINLDRIKQDLI------SEQVIPEEYGGASPFISISAKTGV 217
VP+I+ NK D + L R+KQ+ + + V + Y ++ SAKT
Sbjct: 130 VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYD----YLECSAKTKE 185
Query: 218 GINKLLENISLQA 230
G+ ++ E + A
Sbjct: 186 GVREVFETATRAA 198
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor Domain
Of The 16s Rrna Within The Thermus Thermophilus 30s
Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 69/164 (42%), Gaps = 39/164 (23%)
Query: 926 AIIAHVDHGKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 983
AI+ + GK+TL++ LL Q S T RK Q RI+ I
Sbjct: 12 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV------------------GIHTE 53
Query: 984 GTRINI-IDTPG-HADFGGEVERIL-----SMVDNVLLLIDAVEGP--MPQTRFVTRKAL 1034
G I +DTPG H + + R++ S + +V L+I VEG P V K L
Sbjct: 54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNK-L 112
Query: 1035 KLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077
+ G P+++ VNK+D V DL L Q++F
Sbjct: 113 REGKAPVILAVNKVDN--------VQEKADLLPHLQFLASQMNF 148
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 21/167 (12%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQ--HIGAYNVVTNHGSITFLDTPG--HE 127
+ + G + GK+S ++ + + NV T+ ++G ++ N I +DTPG
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQI--IDTPGLLDR 89
Query: 128 AF--------TAMRARGAKVTDIVVLVVAADDGVMPQTREAI-----AHAKISGVPLIVA 174
AF T + A A + +++ ++ + +E I + S +++
Sbjct: 90 AFENRNTIEMTTITAL-AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIG 148
Query: 175 INKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221
NKIDK +++ I L+ +Q++ + F S S TGVG+ +
Sbjct: 149 FNKIDKCNMDSLSIDNKLLIKQIL-DNVKNPIKFSSFSTLTGVGVEQ 194
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 23/179 (12%)
Query: 63 AESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGIT---QHIGAYNVVTNHGSIT 119
A + +R +V I+G GKT LL K F E T ++ V +
Sbjct: 2 AMAAIRKKLV-IVGDGACGKTCLLIVFSKDQ--FPEVYVPTVFENYVADIEVDGKQVELA 58
Query: 120 FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVPLI 172
DT G E + +R TD++++ + D P + E I VP+I
Sbjct: 59 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPII 115
Query: 173 VAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLLE 224
+ NK D + D + R + E V PEE GA ++ SAKT G+ ++ E
Sbjct: 116 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVP 170
+ DT G E + +R TD++++ + D P + E I VP
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVP 113
Query: 171 LIVAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLL 223
+I+ NK D + D + R + E V PEE GA ++ SAKT G+ ++
Sbjct: 114 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
Query: 224 E 224
E
Sbjct: 174 E 174
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVP 170
+ DT G E + +R TD++++ + D P + E I VP
Sbjct: 56 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVP 112
Query: 171 LIVAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLL 223
+I+ NK D + D + R + E V PEE GA ++ SAKT G+ ++
Sbjct: 113 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
Query: 224 E 224
E
Sbjct: 173 E 173
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVP 170
+ DT G E + +R TD++++ + D P + E I VP
Sbjct: 59 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVP 115
Query: 171 LIVAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLL 223
+I+ NK D + D + R + E V PEE GA ++ SAKT G+ ++
Sbjct: 116 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
Query: 224 E 224
E
Sbjct: 176 E 176
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVP 170
+ DT G E + +R TD++++ + D P + E I VP
Sbjct: 58 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVP 114
Query: 171 LIVAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLL 223
+I+ NK D + D + R + E V PEE GA ++ SAKT G+ ++
Sbjct: 115 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
Query: 224 E 224
E
Sbjct: 175 E 175
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVP 170
+ DT G E + +R TD++++ + D P + E I VP
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVP 113
Query: 171 LIVAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLL 223
+I+ NK D + D + R + E V PEE GA ++ SAKT G+ ++
Sbjct: 114 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
Query: 224 E 224
E
Sbjct: 174 E 174
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVP 170
+ DT G E + +R TD++++ + D P + E I VP
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVP 111
Query: 171 LIVAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLL 223
+I+ NK D + D + R + E V PEE GA ++ SAKT G+ ++
Sbjct: 112 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
Query: 224 E 224
E
Sbjct: 172 E 172
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVP 170
+ DT G E + +R TD++++ + D P + E I VP
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVP 111
Query: 171 LIVAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLL 223
+I+ NK D + D + R + E V PEE GA ++ SAKT G+ ++
Sbjct: 112 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
Query: 224 E 224
E
Sbjct: 172 E 172
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVP 170
+ DT G E + +R TD++++ + D P + E I VP
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVP 111
Query: 171 LIVAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLL 223
+I+ NK D + D + R + E V PEE GA ++ SAKT G+ ++
Sbjct: 112 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
Query: 224 E 224
E
Sbjct: 172 E 172
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVP 170
+ DT G E + +R TD++++ + D P + E I VP
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVP 111
Query: 171 LIVAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLL 223
+I+ NK D + D + R + E V PEE GA ++ SAKT G+ ++
Sbjct: 112 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
Query: 224 E 224
E
Sbjct: 172 E 172
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 980 IEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLI-----DAVEGPMPQT 1026
I +G ++IIDT G + EVERI + D VL ++ DAV+
Sbjct: 47 IHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWP 106
Query: 1027 RFVTRKALKLGFKPIVVV-NKID 1048
F+ R KL PI VV NK D
Sbjct: 107 EFIARLPAKL---PITVVRNKAD 126
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVP 170
+ DT G E + +R TD++++ + D P + E I VP
Sbjct: 53 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVP 109
Query: 171 LIVAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLL 223
+I+ NK D + D + R + E V PEE GA ++ SAKT G+ ++
Sbjct: 110 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
Query: 224 E 224
E
Sbjct: 170 E 170
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI-------SGVP 170
+ DT G E + +R TD++++ + D P + E I VP
Sbjct: 53 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVP 109
Query: 171 LIVAINKID-KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLL 223
+I+ NK D + D + R + E V PEE GA ++ SAKT G+ ++
Sbjct: 110 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
Query: 224 E 224
E
Sbjct: 170 E 170
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme Protein
Length = 172
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 980 IEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLI-----DAVEGPMPQT 1026
I +G ++IIDT G + EVERI + D VL ++ DAV+
Sbjct: 50 IHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWP 109
Query: 1027 RFVTRKALKLGFKPIVVV-NKID 1048
F+ R KL PI VV NK D
Sbjct: 110 EFIARLPAKL---PITVVRNKAD 129
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 31.2 bits (69), Expect = 4.8, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 24/124 (19%)
Query: 118 ITFLDTPGHEAFTAMR----ARGAKVTDIVVLVVAADDGVMPQTREAIAHAK-ISGVPLI 172
+ LDT G E FTAMR G + + + + RE I K VP+I
Sbjct: 55 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMI 114
Query: 173 VAINKIDKLDINLDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLEN 225
+ NK D D E+V+ +E G F+ SAK+ + +N++ +
Sbjct: 115 LVGNKCDLED------------ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYD 162
Query: 226 ISLQ 229
+ Q
Sbjct: 163 LVRQ 166
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 31.2 bits (69), Expect = 4.8, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 24/124 (19%)
Query: 118 ITFLDTPGHEAFTAMR----ARGAKVTDIVVLVVAADDGVMPQTREAIAHAK-ISGVPLI 172
+ LDT G E FTAMR G + + + + RE I K VP+I
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMI 112
Query: 173 VAINKIDKLDINLDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLEN 225
+ NK D D E+V+ +E G F+ SAK+ + +N++ +
Sbjct: 113 LVGNKCDLED------------ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYD 160
Query: 226 ISLQ 229
+ Q
Sbjct: 161 LVRQ 164
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 24/124 (19%)
Query: 118 ITFLDTPGHEAFTAMR----ARGAKVTDIVVLVVAADDGVMPQTREAIAHAK-ISGVPLI 172
+ LDT G E FTAMR G + + + + RE I K VP+I
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 112
Query: 173 VAINKIDKLDINLDRIKQDLISEQVIPEEYGG-------ASPFISISAKTGVGINKLLEN 225
+ NK D D E+V+ +E G F+ SAK+ + +N++ +
Sbjct: 113 LVGNKCDLED------------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160
Query: 226 ISLQ 229
+ Q
Sbjct: 161 LVRQ 164
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 24/124 (19%)
Query: 118 ITFLDTPGHEAFTAMR----ARGAKVTDIVVLVVAADDGVMPQTREAIAHAK-ISGVPLI 172
+ LDT G E FTAMR G + + + + RE I K VP+I
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 112
Query: 173 VAINKIDKLDINLDRIKQDLISEQVIPEEYGG-------ASPFISISAKTGVGINKLLEN 225
+ NK D D E+V+ +E G F+ SAK+ + +N++ +
Sbjct: 113 LVGNKCDLED------------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160
Query: 226 ISLQ 229
+ Q
Sbjct: 161 LVRQ 164
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAK-ISGVPLIVAI 175
LDT G E F+AMR + + D ++V + D + + + I K P+I+
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214
NK+D + +L ++ +D E P+I SAK
Sbjct: 131 NKVDLM--HLRKVTRDQGKEMATKYNI----PYIETSAK 163
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 30.8 bits (68), Expect = 6.2, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAK-ISGVPLIVAI 175
LDT G E F+AMR + + D ++V + D + + + I K P+I+
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214
NK+D + +L ++ +D E P+I SAK
Sbjct: 131 NKVDLM--HLRKVTRDQGKEMATKYNI----PYIETSAK 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAK-ISGVPLIVAI 175
LDT G E F+AMR + + D ++V + D + + + I K P+I+
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214
NK+D + +L ++ +D E P+I SAK
Sbjct: 131 NKVDLM--HLRKVTRDQGKEMATKYNI----PYIETSAK 163
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAK-ISGVPLIVAI 175
LDT G E F+AMR + + D ++V + D + + + I K P+I+
Sbjct: 66 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 125
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214
NK+D + +L ++ +D E P+I SAK
Sbjct: 126 NKVDLM--HLRKVTRDQGKEMATKYNI----PYIETSAK 158
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 27/142 (19%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSI-----TFLDTPGH 126
+ +G + GKT+LL ++ + QH+ + + +I T D GH
Sbjct: 38 LVFLGLDNAGKTTLLHMLKDDR--------LGQHVPTLHPTSEELTIAGMTFTTFDLGGH 89
Query: 127 E-AFTAMRARGAKVTDIVVLVVAADDGVMPQTR----EAIAHAKISGVPLIVAINKIDKL 181
E A + + IV LV AD + +++ + IS VP+++ NKID
Sbjct: 90 EQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKID-- 147
Query: 182 DINLDRIKQDLISEQVIPEEYG 203
+ D ISE+ + E +G
Sbjct: 148 -------RTDAISEEKLREIFG 162
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 30.0 bits (66), Expect = 9.4, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 17/83 (20%)
Query: 980 IEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLI-----DAVEGPMPQT 1026
I +G ++IIDT G + EVERI + D VL + DAV+
Sbjct: 47 IHIDGXPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIWP 106
Query: 1027 RFVTRKALKLGFKPIVVV-NKID 1048
F+ R KL PI VV NK D
Sbjct: 107 EFIARLPAKL---PITVVRNKAD 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,382,728
Number of Sequences: 62578
Number of extensions: 1745016
Number of successful extensions: 5175
Number of sequences better than 100.0: 206
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 4653
Number of HSP's gapped (non-prelim): 373
length of query: 1527
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1416
effective length of database: 8,027,179
effective search space: 11366485464
effective search space used: 11366485464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)