Query psy1758
Match_columns 1527
No_of_seqs 1248 out of 10059
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 17:13:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1217 TypA Predicted membran 100.0 3E-174 7E-179 1465.6 50.8 600 920-1525 3-602 (603)
2 TIGR01394 TypA_BipA GTP-bindin 100.0 4E-143 9E-148 1341.9 60.3 594 922-1521 1-594 (594)
3 PRK10218 GTP-binding protein; 100.0 1E-141 3E-146 1324.0 62.8 601 920-1525 3-603 (607)
4 KOG0462|consensus 100.0 6E-104 1E-108 912.3 37.3 560 916-1511 54-641 (650)
5 KOG1145|consensus 100.0 1.1E-98 2E-103 866.4 50.4 558 2-560 78-668 (683)
6 PRK05306 infB translation init 100.0 1.7E-94 3.8E-99 916.3 60.6 542 1-552 232-773 (787)
7 TIGR00487 IF-2 translation ini 100.0 9.7E-94 2.1E-98 894.2 59.4 550 1-552 21-571 (587)
8 COG0532 InfB Translation initi 100.0 1E-93 2.3E-98 844.0 52.5 487 66-552 2-492 (509)
9 CHL00189 infB translation init 100.0 3.9E-92 8.4E-97 886.4 59.3 548 1-552 175-727 (742)
10 COG0481 LepA Membrane GTPase L 100.0 1.4E-85 3.1E-90 747.2 35.8 486 917-1442 4-526 (603)
11 PRK05433 GTP-binding protein L 100.0 2.3E-80 5E-85 779.6 46.1 482 919-1441 4-522 (600)
12 TIGR01393 lepA GTP-binding pro 100.0 4.9E-80 1.1E-84 776.0 47.0 481 921-1441 2-519 (595)
13 COG0480 FusA Translation elong 100.0 5.7E-79 1.2E-83 762.8 46.9 453 919-1395 7-680 (697)
14 KOG0465|consensus 100.0 4.4E-78 9.5E-83 703.6 29.0 453 917-1396 34-711 (721)
15 PRK00007 elongation factor G; 100.0 1.6E-73 3.6E-78 734.8 45.0 453 918-1395 6-680 (693)
16 PRK04004 translation initiatio 100.0 2.2E-71 4.8E-76 695.5 50.4 451 66-546 3-537 (586)
17 TIGR00484 EF-G translation elo 100.0 1.1E-71 2.4E-76 719.2 46.6 454 917-1395 5-677 (689)
18 TIGR00491 aIF-2 translation in 100.0 8.1E-71 1.8E-75 686.2 50.9 448 67-546 2-535 (590)
19 PRK12739 elongation factor G; 100.0 1.7E-71 3.7E-76 716.8 45.4 453 918-1395 4-677 (691)
20 PRK07560 elongation factor EF- 100.0 2E-70 4.4E-75 709.9 43.7 463 918-1395 16-702 (731)
21 PRK04642 truB tRNA pseudouridi 100.0 3.6E-72 7.9E-77 631.8 20.7 255 660-914 7-263 (300)
22 PRK13351 elongation factor G; 100.0 2.2E-69 4.7E-74 700.3 48.8 455 917-1395 3-677 (687)
23 PRK01851 truB tRNA pseudouridi 100.0 7.6E-72 1.6E-76 631.3 20.1 256 658-914 11-266 (303)
24 PRK05033 truB tRNA pseudouridi 100.0 3.4E-71 7.4E-76 628.4 22.7 254 660-914 7-270 (312)
25 PRK00130 truB tRNA pseudouridi 100.0 3E-71 6.4E-76 627.6 20.2 250 662-914 1-250 (290)
26 PRK02755 truB tRNA pseudouridi 100.0 3.5E-71 7.6E-76 626.1 20.4 251 662-914 2-255 (295)
27 PRK02484 truB tRNA pseudouridi 100.0 3.3E-71 7.2E-76 627.3 19.8 254 661-914 1-261 (294)
28 PRK01550 truB tRNA pseudouridi 100.0 1E-70 2.3E-75 626.0 21.0 253 662-914 1-261 (304)
29 PRK05389 truB tRNA pseudouridi 100.0 1.2E-70 2.5E-75 624.6 20.9 255 659-914 9-265 (305)
30 PRK01528 truB tRNA pseudouridi 100.0 1.7E-70 3.7E-75 618.5 20.2 252 662-914 2-255 (292)
31 PRK14123 tRNA pseudouridine sy 100.0 2.1E-70 4.5E-75 623.8 20.1 254 661-914 1-263 (305)
32 PRK14124 tRNA pseudouridine sy 100.0 2E-70 4.3E-75 622.4 19.7 249 661-914 1-249 (308)
33 PRK14846 truB tRNA pseudouridi 100.0 4.3E-70 9.2E-75 615.0 20.1 253 662-915 2-256 (345)
34 PRK03287 truB tRNA pseudouridi 100.0 8E-70 1.7E-74 614.8 20.1 249 661-914 7-260 (298)
35 cd02573 PseudoU_synth_EcTruB P 100.0 1.2E-69 2.5E-74 611.9 21.2 252 664-915 1-254 (277)
36 TIGR00490 aEF-2 translation el 100.0 1.9E-67 4.2E-72 680.2 41.7 463 918-1395 15-700 (720)
37 PRK12740 elongation factor G; 100.0 4.1E-67 8.9E-72 678.4 44.7 443 928-1395 1-659 (668)
38 PRK14845 translation initiatio 100.0 6.2E-66 1.3E-70 665.5 48.9 436 82-546 474-993 (1049)
39 PRK00020 truB tRNA pseudouridi 100.0 1.7E-68 3.7E-73 583.1 20.3 215 660-874 7-223 (244)
40 PLN00116 translation elongatio 100.0 3.6E-66 7.9E-71 676.6 44.3 467 918-1395 15-806 (843)
41 PRK14122 tRNA pseudouridine sy 100.0 2.3E-68 5E-73 604.1 19.8 242 665-914 3-278 (312)
42 TIGR00431 TruB tRNA pseudourid 100.0 6.1E-68 1.3E-72 571.4 19.2 209 662-871 1-209 (209)
43 PTZ00416 elongation factor 2; 100.0 2.5E-65 5.4E-70 667.1 45.1 466 918-1395 15-799 (836)
44 PRK00989 truB tRNA pseudouridi 100.0 3.4E-67 7.4E-72 569.3 20.4 212 660-873 6-218 (230)
45 PRK04099 truB tRNA pseudouridi 100.0 4.2E-67 9E-72 583.5 20.6 235 662-915 1-235 (273)
46 cd00506 PseudoU_synth_TruB_lik 100.0 1.4E-66 3E-71 564.2 18.8 208 664-871 1-210 (210)
47 PRK02193 truB tRNA pseudouridi 100.0 1.7E-66 3.8E-71 582.5 19.0 234 665-914 2-237 (279)
48 KOG0464|consensus 100.0 2E-62 4.4E-67 544.0 14.9 465 917-1405 32-748 (753)
49 cd02867 PseudoU_synth_TruB_4 P 100.0 3E-61 6.5E-66 546.1 18.3 201 664-864 1-234 (312)
50 COG0130 TruB Pseudouridine syn 100.0 2.7E-58 5.8E-63 514.5 17.5 224 656-911 5-231 (271)
51 PRK00741 prfC peptide chain re 100.0 1.1E-55 2.5E-60 547.4 38.4 366 919-1310 7-469 (526)
52 TIGR00503 prfC peptide chain r 100.0 5.6E-55 1.2E-59 541.3 37.5 364 919-1308 8-468 (527)
53 cd02868 PseudoU_synth_hTruB2_l 100.0 1.8E-56 3.8E-61 491.5 18.1 209 664-872 1-218 (226)
54 KOG0469|consensus 100.0 4.1E-55 8.9E-60 495.7 26.6 466 919-1395 16-805 (842)
55 KOG1144|consensus 100.0 3E-53 6.6E-58 499.4 29.7 486 64-574 470-1035(1064)
56 PRK04270 H/ACA RNA-protein com 100.0 2.4E-54 5.1E-59 498.5 17.1 230 650-914 9-246 (300)
57 TIGR00425 CBF5 rRNA pseudourid 100.0 5.5E-54 1.2E-58 496.3 17.2 219 662-915 33-259 (322)
58 cd02572 PseudoU_synth_hDyskeri 100.0 1.6E-52 3.5E-57 447.3 17.0 176 663-873 2-180 (182)
59 PF01509 TruB_N: TruB family p 100.0 5.3E-49 1.1E-53 406.3 15.9 149 684-832 1-149 (149)
60 COG4108 PrfC Peptide chain rel 100.0 6.8E-47 1.5E-51 429.1 26.3 362 920-1307 10-468 (528)
61 KOG0468|consensus 100.0 1.6E-42 3.5E-47 405.1 30.8 467 918-1395 124-907 (971)
62 KOG0467|consensus 100.0 1.8E-42 4E-47 413.5 28.5 467 917-1395 4-829 (887)
63 COG5256 TEF1 Translation elong 100.0 1.5E-37 3.3E-42 355.8 26.8 283 921-1214 6-320 (428)
64 PRK12736 elongation factor Tu; 100.0 1E-36 2.2E-41 370.1 26.6 283 919-1211 9-298 (394)
65 CHL00071 tufA elongation facto 100.0 1.6E-36 3.6E-41 370.0 26.6 285 919-1211 9-308 (409)
66 PLN00043 elongation factor 1-a 100.0 1.4E-36 3E-41 371.9 25.0 280 920-1210 5-318 (447)
67 PTZ00141 elongation factor 1- 100.0 2.4E-36 5.2E-41 370.1 25.7 279 921-1210 6-318 (446)
68 TIGR00485 EF-Tu translation el 100.0 4.5E-36 9.7E-41 365.1 26.6 281 920-1210 10-297 (394)
69 PRK12735 elongation factor Tu; 100.0 8.5E-36 1.8E-40 362.3 26.5 284 920-1211 10-300 (396)
70 PRK00049 elongation factor Tu; 100.0 1.7E-35 3.6E-40 359.4 27.2 283 920-1210 10-299 (396)
71 PLN03126 Elongation factor Tu; 100.0 1.5E-35 3.3E-40 363.5 27.1 285 919-1211 78-377 (478)
72 PLN03127 Elongation factor Tu; 100.0 5.9E-35 1.3E-39 357.0 27.7 286 919-1210 58-350 (447)
73 TIGR02034 CysN sulfate adenyly 100.0 1.2E-34 2.6E-39 353.0 26.4 278 924-1211 2-301 (406)
74 PRK12317 elongation factor 1-a 100.0 1.1E-34 2.5E-39 357.1 25.1 281 920-1211 4-311 (425)
75 COG0050 TufB GTPases - transla 100.0 7.6E-35 1.7E-39 315.3 16.2 285 920-1214 10-301 (394)
76 KOG0460|consensus 100.0 3.1E-35 6.6E-40 323.9 13.1 290 921-1218 53-349 (449)
77 PRK05124 cysN sulfate adenylyl 100.0 1.7E-33 3.7E-38 347.5 25.8 283 920-1212 25-330 (474)
78 TIGR00483 EF-1_alpha translati 100.0 2.2E-33 4.7E-38 345.6 26.2 281 920-1211 5-313 (426)
79 PRK05306 infB translation init 100.0 8.8E-33 1.9E-37 352.8 30.2 426 920-1403 288-776 (787)
80 PTZ00327 eukaryotic translatio 100.0 5.1E-33 1.1E-37 338.7 23.6 260 921-1211 33-352 (460)
81 KOG2559|consensus 100.0 5.4E-34 1.2E-38 298.3 10.3 198 658-867 6-257 (318)
82 COG2895 CysN GTPases - Sulfate 100.0 1.9E-32 4.1E-37 304.6 21.6 305 921-1239 5-331 (431)
83 TIGR00487 IF-2 translation ini 100.0 6.9E-31 1.5E-35 329.4 29.9 425 921-1403 86-574 (587)
84 PRK05506 bifunctional sulfate 100.0 4E-31 8.7E-36 339.7 26.4 279 921-1212 23-326 (632)
85 PRK10512 selenocysteinyl-tRNA- 100.0 5.7E-31 1.2E-35 332.8 25.9 251 924-1210 2-260 (614)
86 PRK04000 translation initiatio 100.0 1.3E-30 2.9E-35 317.5 26.2 262 920-1212 7-320 (411)
87 TIGR03680 eif2g_arch translati 100.0 2.1E-30 4.5E-35 316.2 26.7 259 922-1211 4-314 (406)
88 KOG0458|consensus 100.0 5E-30 1.1E-34 303.1 24.3 279 919-1208 174-488 (603)
89 COG1160 Predicted GTPases [Gen 100.0 4.9E-29 1.1E-33 291.6 32.3 150 70-229 4-163 (444)
90 CHL00189 infB translation init 100.0 4.4E-30 9.6E-35 325.0 24.3 426 920-1403 242-730 (742)
91 TIGR00475 selB selenocysteine- 100.0 1.6E-29 3.4E-34 319.2 25.8 252 924-1209 2-260 (581)
92 cd01885 EF2 EF2 (for archaea a 100.0 1.3E-29 2.8E-34 282.7 17.8 190 923-1114 1-222 (222)
93 PRK00093 GTP-binding protein D 100.0 6E-27 1.3E-31 290.4 37.4 149 70-228 2-159 (435)
94 COG3276 SelB Selenocysteine-sp 100.0 1.7E-28 3.6E-33 283.9 21.1 250 924-1210 2-256 (447)
95 PF00009 GTP_EFTU: Elongation 100.0 3E-29 6.5E-34 275.3 12.1 182 921-1113 2-188 (188)
96 TIGR01394 TypA_BipA GTP-bindin 100.0 4.7E-27 1E-31 295.8 28.9 250 70-322 2-287 (594)
97 cd01886 EF-G Elongation factor 100.0 8.4E-28 1.8E-32 276.6 17.6 143 924-1066 1-145 (270)
98 TIGR00475 selB selenocysteine- 100.0 8.7E-27 1.9E-31 294.4 28.4 235 70-307 1-242 (581)
99 COG5258 GTPBP1 GTPase [General 100.0 3.8E-27 8.2E-32 263.5 21.9 279 920-1215 115-442 (527)
100 cd04168 TetM_like Tet(M)-like 99.9 2.3E-27 4.9E-32 268.6 17.0 181 924-1114 1-237 (237)
101 KOG1145|consensus 99.9 5.3E-27 1.1E-31 273.1 19.6 251 921-1208 152-406 (683)
102 PRK10512 selenocysteinyl-tRNA- 99.9 5E-26 1.1E-30 288.0 29.3 244 71-321 2-258 (614)
103 cd01884 EF_Tu EF-Tu subfamily. 99.9 3.7E-27 7.9E-32 259.0 16.5 190 923-1114 3-195 (195)
104 KOG0462|consensus 99.9 1.1E-26 2.4E-31 271.1 20.1 249 68-323 59-332 (650)
105 PRK10218 GTP-binding protein; 99.9 5.3E-26 1.1E-30 285.6 27.7 250 69-321 5-290 (607)
106 cd04169 RF3 RF3 subfamily. Pe 99.9 7.4E-27 1.6E-31 268.6 18.0 145 921-1065 1-151 (267)
107 PRK12736 elongation factor Tu; 99.9 8.2E-26 1.8E-30 274.9 27.7 251 67-321 10-295 (394)
108 TIGR01393 lepA GTP-binding pro 99.9 4.3E-25 9.3E-30 279.0 32.8 296 70-399 4-326 (595)
109 COG1217 TypA Predicted membran 99.9 6.8E-26 1.5E-30 259.3 22.4 248 70-320 6-289 (603)
110 TIGR00082 rbfA ribosome-bindin 99.9 6.6E-27 1.4E-31 231.7 12.1 112 538-649 2-113 (114)
111 cd01891 TypA_BipA TypA (tyrosi 99.9 5.1E-26 1.1E-30 251.0 18.7 194 921-1114 1-194 (194)
112 PRK12735 elongation factor Tu; 99.9 3E-25 6.6E-30 270.0 27.2 251 67-321 10-297 (396)
113 COG5257 GCD11 Translation init 99.9 9.8E-26 2.1E-30 247.9 20.4 256 922-1207 10-311 (415)
114 TIGR00485 EF-Tu translation el 99.9 3E-25 6.5E-30 270.4 26.7 254 67-321 10-295 (394)
115 COG0481 LepA Membrane GTPase L 99.9 4.1E-26 8.8E-31 262.0 17.8 247 69-323 9-283 (603)
116 PRK13818 ribosome-binding fact 99.9 1.3E-26 2.8E-31 231.2 11.8 112 541-652 4-116 (121)
117 COG0532 InfB Translation initi 99.9 1.2E-25 2.5E-30 267.3 22.0 252 922-1210 5-262 (509)
118 PRK12317 elongation factor 1-a 99.9 1.3E-25 2.9E-30 276.7 23.3 252 68-321 5-308 (425)
119 KOG0459|consensus 99.9 3.5E-26 7.7E-31 258.0 16.1 284 918-1213 75-393 (501)
120 PRK13815 ribosome-binding fact 99.9 1.6E-26 3.5E-31 230.8 11.8 110 541-650 4-113 (122)
121 PTZ00141 elongation factor 1- 99.9 3.9E-25 8.5E-30 271.4 26.2 248 68-321 6-316 (446)
122 PLN00043 elongation factor 1-a 99.9 5.6E-25 1.2E-29 269.8 27.2 247 68-321 6-316 (447)
123 PLN03127 Elongation factor Tu; 99.9 6.6E-25 1.4E-29 268.8 27.3 252 67-322 59-349 (447)
124 PLN03126 Elongation factor Tu; 99.9 7.1E-25 1.5E-29 269.6 27.6 251 67-321 79-374 (478)
125 CHL00071 tufA elongation facto 99.9 6.4E-25 1.4E-29 268.4 26.7 250 68-321 11-305 (409)
126 COG0858 RbfA Ribosome-binding 99.9 3.2E-26 6.9E-31 226.5 11.6 111 541-651 6-117 (118)
127 TIGR00483 EF-1_alpha translati 99.9 5.8E-25 1.3E-29 271.0 25.5 247 68-321 6-310 (426)
128 PTZ00327 eukaryotic translatio 99.9 5E-25 1.1E-29 268.9 24.6 249 68-321 33-349 (460)
129 PRK05433 GTP-binding protein L 99.9 1.3E-24 2.9E-29 274.8 28.7 296 69-398 7-329 (600)
130 PRK04004 translation initiatio 99.9 3.5E-25 7.6E-30 278.9 23.0 272 922-1207 6-326 (586)
131 PRK00049 elongation factor Tu; 99.9 1.6E-24 3.5E-29 263.5 27.7 251 67-321 10-297 (396)
132 TIGR03594 GTPase_EngA ribosome 99.9 3.6E-24 7.9E-29 265.3 31.2 146 71-226 1-155 (429)
133 COG5256 TEF1 Translation elong 99.9 1.3E-24 2.7E-29 250.0 23.6 253 68-324 6-317 (428)
134 PRK13817 ribosome-binding fact 99.9 1E-25 2.2E-30 224.4 11.8 109 541-650 4-112 (119)
135 PRK13816 ribosome-binding fact 99.9 2.1E-25 4.6E-30 225.6 11.6 112 541-652 4-123 (131)
136 TIGR03680 eif2g_arch translati 99.9 6E-24 1.3E-28 259.6 25.8 249 69-322 4-312 (406)
137 KOG0461|consensus 99.9 1E-24 2.2E-29 240.5 15.7 246 923-1194 8-267 (522)
138 COG3276 SelB Selenocysteine-sp 99.9 7.5E-24 1.6E-28 245.5 23.2 229 71-307 2-237 (447)
139 TIGR02034 CysN sulfate adenyly 99.9 1.3E-23 2.9E-28 256.3 25.6 248 71-322 2-299 (406)
140 PRK04000 translation initiatio 99.9 2.8E-23 6.1E-28 253.4 26.4 250 68-322 8-317 (411)
141 cd01883 EF1_alpha Eukaryotic e 99.9 1.6E-24 3.4E-29 243.6 13.7 186 924-1111 1-216 (219)
142 PRK00741 prfC peptide chain re 99.9 3.5E-23 7.7E-28 257.8 26.2 302 67-400 8-426 (526)
143 TIGR00491 aIF-2 translation in 99.9 2.2E-23 4.7E-28 261.4 24.0 256 923-1206 5-323 (590)
144 PRK00521 rbfA ribosome-binding 99.9 2.3E-24 4.9E-29 216.8 12.1 114 538-651 4-117 (120)
145 PF11987 IF-2: Translation-ini 99.9 2.4E-25 5.1E-30 218.2 4.8 107 352-458 2-108 (108)
146 PRK05124 cysN sulfate adenylyl 99.9 4.6E-23 1E-27 255.0 25.6 254 67-322 25-327 (474)
147 TIGR00484 EF-G translation elo 99.9 7.5E-23 1.6E-27 265.5 28.4 301 69-399 10-439 (689)
148 cd04166 CysN_ATPS CysN_ATPS su 99.9 7.1E-24 1.5E-28 236.4 16.0 186 924-1114 1-207 (208)
149 PRK00007 elongation factor G; 99.9 1.1E-22 2.3E-27 263.7 28.9 303 68-400 9-442 (693)
150 COG2895 CysN GTPases - Sulfate 99.9 3.5E-23 7.6E-28 231.1 20.3 257 68-327 5-310 (431)
151 COG0050 TufB GTPases - transla 99.9 2.4E-23 5.2E-28 226.4 18.2 252 68-324 11-298 (394)
152 PRK12739 elongation factor G; 99.9 1.6E-22 3.4E-27 262.3 29.0 301 68-398 7-437 (691)
153 TIGR00503 prfC peptide chain r 99.9 1.2E-22 2.7E-27 253.0 26.3 301 67-399 9-426 (527)
154 PRK13351 elongation factor G; 99.9 2.6E-22 5.7E-27 261.2 28.3 302 68-399 7-437 (687)
155 cd04170 EF-G_bact Elongation f 99.9 2.6E-23 5.6E-28 241.1 16.3 142 924-1065 1-144 (268)
156 COG0480 FusA Translation elong 99.9 4.1E-22 8.8E-27 251.4 27.7 302 67-398 8-438 (697)
157 cd01890 LepA LepA subfamily. 99.9 9.5E-23 2.1E-27 221.5 18.6 174 923-1114 1-179 (179)
158 cd04167 Snu114p Snu114p subfam 99.9 7.8E-23 1.7E-27 229.0 16.5 190 923-1114 1-213 (213)
159 PRK05506 bifunctional sulfate 99.9 4.9E-22 1.1E-26 255.9 25.3 250 69-322 24-323 (632)
160 PRK12740 elongation factor G; 99.9 1.6E-21 3.4E-26 253.6 27.8 296 75-400 1-421 (668)
161 cd01888 eIF2_gamma eIF2-gamma 99.9 3.1E-22 6.6E-27 222.4 14.1 166 923-1115 1-202 (203)
162 cd01889 SelB_euk SelB subfamil 99.9 4.7E-22 1E-26 219.1 15.5 173 924-1115 2-189 (192)
163 KOG0460|consensus 99.9 8.3E-22 1.8E-26 218.3 16.9 252 68-322 53-340 (449)
164 PF02033 RBFA: Ribosome-bindin 99.9 1.4E-22 2.9E-27 199.7 8.8 104 541-644 1-104 (104)
165 PF00009 GTP_EFTU: Elongation 99.9 8E-22 1.7E-26 216.5 14.7 161 69-229 3-185 (188)
166 PRK07560 elongation factor EF- 99.9 9.9E-21 2.1E-25 246.8 24.5 303 68-399 19-423 (731)
167 cd04165 GTPBP1_like GTPBP1-lik 99.9 2E-21 4.4E-26 218.1 14.6 178 924-1114 1-224 (224)
168 PRK14845 translation initiatio 99.9 1.9E-20 4.2E-25 244.1 23.1 247 935-1209 474-783 (1049)
169 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.3E-20 5E-25 200.3 19.6 161 70-230 1-165 (168)
170 COG5257 GCD11 Translation init 99.8 2E-20 4.4E-25 206.4 18.9 236 68-307 9-297 (415)
171 KOG0461|consensus 99.8 2.5E-20 5.3E-25 206.1 18.6 236 69-307 7-268 (522)
172 KOG0084|consensus 99.8 1.6E-20 3.5E-25 195.9 15.2 158 67-230 7-171 (205)
173 cd00881 GTP_translation_factor 99.8 5E-20 1.1E-24 201.4 17.7 181 924-1114 1-189 (189)
174 TIGR00490 aEF-2 translation el 99.8 7.4E-20 1.6E-24 237.9 21.6 304 68-399 18-423 (720)
175 KOG0465|consensus 99.8 4.4E-20 9.6E-25 218.2 15.3 300 68-398 38-468 (721)
176 KOG2529|consensus 99.8 9.9E-21 2.2E-25 217.2 9.5 221 661-915 66-297 (395)
177 COG4108 PrfC Peptide chain rel 99.8 1.4E-19 3.1E-24 207.3 17.8 255 66-321 9-380 (528)
178 COG1160 Predicted GTPases [Gen 99.8 1.5E-19 3.2E-24 212.4 18.2 225 6-234 102-354 (444)
179 cd04171 SelB SelB subfamily. 99.8 2.7E-19 5.9E-24 190.9 18.8 155 71-227 2-162 (164)
180 COG5258 GTPBP1 GTPase [General 99.8 2.9E-19 6.2E-24 200.8 19.2 262 66-330 114-444 (527)
181 KOG0463|consensus 99.8 1.5E-19 3.3E-24 201.2 14.3 271 923-1210 134-456 (641)
182 KOG0094|consensus 99.8 3.5E-19 7.6E-24 184.7 15.9 158 66-229 19-183 (221)
183 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.6E-19 1E-23 194.9 18.0 151 70-220 3-172 (195)
184 KOG0458|consensus 99.8 1.4E-18 3E-23 206.7 20.8 251 69-320 177-487 (603)
185 cd01890 LepA LepA subfamily. 99.8 1.5E-18 3.2E-23 188.6 18.4 153 71-228 2-174 (179)
186 cd01889 SelB_euk SelB subfamil 99.8 1.2E-18 2.7E-23 191.9 17.6 160 70-229 1-184 (192)
187 PLN00116 translation elongatio 99.8 1E-17 2.2E-22 221.0 28.8 303 68-398 18-520 (843)
188 cd04171 SelB SelB subfamily. 99.8 9.5E-19 2.1E-23 186.7 15.7 158 924-1108 2-162 (164)
189 KOG0092|consensus 99.8 3.2E-19 6.8E-24 185.7 11.2 157 67-229 3-165 (200)
190 KOG0394|consensus 99.8 5.2E-19 1.1E-23 181.7 12.3 160 68-230 8-177 (210)
191 cd04120 Rab12 Rab12 subfamily. 99.8 2.2E-18 4.7E-23 190.8 17.8 154 71-229 2-161 (202)
192 KOG0078|consensus 99.8 2.3E-18 5E-23 183.0 16.0 155 67-229 10-172 (207)
193 cd01891 TypA_BipA TypA (tyrosi 99.8 3E-18 6.5E-23 189.2 17.5 156 70-225 3-176 (194)
194 PF02421 FeoB_N: Ferrous iron 99.8 1.3E-18 2.9E-23 182.1 13.8 147 70-226 1-156 (156)
195 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.3E-18 5.1E-23 192.1 15.0 151 71-224 1-187 (208)
196 PRK03003 GTP-binding protein D 99.8 7.2E-18 1.6E-22 210.4 20.7 161 67-231 209-382 (472)
197 cd04124 RabL2 RabL2 subfamily. 99.8 1.2E-17 2.6E-22 178.7 19.2 151 70-229 1-156 (161)
198 KOG0098|consensus 99.8 1.5E-18 3.2E-23 178.6 11.0 155 69-229 6-166 (216)
199 cd01864 Rab19 Rab19 subfamily. 99.8 9.5E-18 2.1E-22 179.9 17.9 153 69-228 3-163 (165)
200 cd03709 lepA_C lepA_C: This fa 99.8 1.1E-18 2.3E-23 163.4 8.3 78 1317-1394 1-79 (80)
201 PTZ00416 elongation factor 2; 99.8 5.6E-17 1.2E-21 213.5 27.4 114 68-181 18-157 (836)
202 COG1159 Era GTPase [General fu 99.8 6.5E-18 1.4E-22 188.9 15.8 158 67-229 4-170 (298)
203 cd04122 Rab14 Rab14 subfamily. 99.8 1.1E-17 2.4E-22 179.7 17.1 152 70-229 3-162 (166)
204 cd01888 eIF2_gamma eIF2-gamma 99.8 1.1E-17 2.4E-22 186.0 17.6 157 70-228 1-196 (203)
205 cd01883 EF1_alpha Eukaryotic e 99.8 5.2E-18 1.1E-22 190.8 15.1 151 71-221 1-195 (219)
206 cd01867 Rab8_Rab10_Rab13_like 99.8 1.2E-17 2.6E-22 179.6 17.3 153 69-229 3-163 (167)
207 cd04121 Rab40 Rab40 subfamily. 99.8 2.6E-17 5.7E-22 180.5 19.8 154 68-230 5-166 (189)
208 cd01865 Rab3 Rab3 subfamily. 99.8 1.9E-17 4E-22 177.8 18.2 152 70-229 2-161 (165)
209 cd04168 TetM_like Tet(M)-like 99.8 1.3E-17 2.9E-22 189.1 17.9 159 71-229 1-233 (237)
210 cd04128 Spg1 Spg1p. Spg1p (se 99.8 9.7E-18 2.1E-22 183.1 16.0 158 70-230 1-165 (182)
211 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.5E-17 3.2E-22 178.6 17.2 152 70-229 3-162 (166)
212 KOG0095|consensus 99.8 5E-18 1.1E-22 167.1 12.1 154 69-228 7-166 (213)
213 cd04119 RJL RJL (RabJ-Like) su 99.8 2.5E-17 5.3E-22 176.4 18.5 152 70-229 1-165 (168)
214 cd04149 Arf6 Arf6 subfamily. 99.8 1.2E-17 2.5E-22 180.1 16.0 153 68-227 8-166 (168)
215 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.4E-17 3.1E-22 178.6 16.6 161 924-1111 2-165 (168)
216 cd04154 Arl2 Arl2 subfamily. 99.8 1.3E-17 2.7E-22 180.6 16.2 154 67-227 12-171 (173)
217 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.6E-17 3.5E-22 177.4 16.6 150 71-227 2-157 (159)
218 cd04106 Rab23_lke Rab23-like s 99.7 2.5E-17 5.3E-22 175.8 17.8 150 71-228 2-160 (162)
219 KOG1143|consensus 99.7 2E-17 4.3E-22 184.7 17.4 284 923-1233 168-504 (591)
220 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 3.1E-17 6.7E-22 182.2 19.1 154 70-230 1-167 (201)
221 cd01886 EF-G Elongation factor 99.7 2E-17 4.4E-22 190.8 18.1 117 71-187 1-135 (270)
222 cd04113 Rab4 Rab4 subfamily. 99.7 2.3E-17 4.9E-22 176.1 17.2 151 70-228 1-159 (161)
223 cd01874 Cdc42 Cdc42 subfamily. 99.7 1E-17 2.2E-22 181.9 14.3 157 70-229 2-173 (175)
224 PRK15494 era GTPase Era; Provi 99.7 1.9E-17 4.2E-22 197.4 18.1 157 67-230 50-215 (339)
225 cd00877 Ran Ran (Ras-related n 99.7 2.8E-17 6E-22 176.8 17.5 153 70-230 1-158 (166)
226 cd04133 Rop_like Rop subfamily 99.7 1.3E-17 2.9E-22 180.7 15.1 156 70-229 2-171 (176)
227 cd00881 GTP_translation_factor 99.7 3.6E-17 7.7E-22 178.8 18.5 159 71-229 1-185 (189)
228 cd03710 BipA_TypA_C BipA_TypA_ 99.7 4.3E-18 9.2E-23 159.1 9.5 78 1317-1394 1-78 (79)
229 cd04136 Rap_like Rap-like subf 99.7 1.4E-17 3.1E-22 177.7 14.9 152 70-228 2-160 (163)
230 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2.5E-17 5.3E-22 175.3 16.4 150 70-228 2-159 (162)
231 cd01866 Rab2 Rab2 subfamily. 99.7 4.5E-17 9.8E-22 175.4 18.6 151 70-229 5-164 (168)
232 TIGR03594 GTPase_EngA ribosome 99.7 3.7E-17 8E-22 202.9 20.3 221 7-231 98-344 (429)
233 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.8E-17 3.9E-22 177.9 15.1 156 71-227 1-165 (167)
234 cd04157 Arl6 Arl6 subfamily. 99.7 2.3E-17 5E-22 175.9 15.8 152 71-228 1-161 (162)
235 cd01861 Rab6 Rab6 subfamily. 99.7 3.3E-17 7.3E-22 174.6 17.0 150 71-228 2-159 (161)
236 cd01875 RhoG RhoG subfamily. 99.7 3.8E-17 8.3E-22 180.0 17.9 160 69-230 3-176 (191)
237 cd01897 NOG NOG1 is a nucleola 99.7 3.8E-17 8.2E-22 175.6 17.4 150 70-228 1-165 (168)
238 PF00679 EFG_C: Elongation fac 99.7 4.7E-18 1E-22 162.6 9.0 82 1314-1395 1-82 (89)
239 PRK03003 GTP-binding protein D 99.7 3.4E-17 7.3E-22 204.4 19.3 153 67-229 36-197 (472)
240 cd01868 Rab11_like Rab11-like. 99.7 3.9E-17 8.5E-22 175.0 17.2 151 70-228 4-162 (165)
241 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 2.4E-17 5.3E-22 178.4 15.6 154 69-229 2-162 (172)
242 TIGR00436 era GTP-binding prot 99.7 2.6E-17 5.7E-22 191.0 16.8 152 71-229 2-162 (270)
243 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 4.6E-17 1E-21 175.9 17.5 156 71-230 2-164 (170)
244 cd04165 GTPBP1_like GTPBP1-lik 99.7 3.8E-17 8.1E-22 183.7 17.3 157 71-227 1-219 (224)
245 cd04127 Rab27A Rab27a subfamil 99.7 5.3E-17 1.1E-21 176.7 17.9 153 69-229 4-175 (180)
246 cd04175 Rap1 Rap1 subgroup. T 99.7 1.9E-17 4.1E-22 177.3 14.1 151 70-229 2-161 (164)
247 smart00177 ARF ARF-like small 99.7 4E-17 8.6E-22 177.2 16.7 155 68-229 12-172 (175)
248 cd04112 Rab26 Rab26 subfamily. 99.7 7E-17 1.5E-21 177.9 18.8 153 70-230 1-162 (191)
249 cd04151 Arl1 Arl1 subfamily. 99.7 3E-17 6.5E-22 174.8 15.3 150 71-227 1-156 (158)
250 cd04117 Rab15 Rab15 subfamily. 99.7 5.5E-17 1.2E-21 173.6 17.3 150 71-228 2-159 (161)
251 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 5.3E-17 1.2E-21 177.1 17.4 156 69-229 5-178 (182)
252 smart00173 RAS Ras subfamily o 99.7 3.2E-17 6.9E-22 175.4 15.3 150 71-229 2-160 (164)
253 PLN00223 ADP-ribosylation fact 99.7 4.7E-17 1E-21 177.6 16.9 155 68-229 16-176 (181)
254 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 5.1E-17 1.1E-21 177.7 17.1 159 68-230 2-169 (183)
255 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3.1E-17 6.8E-22 175.3 15.1 151 70-229 3-162 (164)
256 PLN03071 GTP-binding nuclear p 99.7 5.5E-17 1.2E-21 182.5 17.7 156 67-230 11-171 (219)
257 cd04131 Rnd Rnd subfamily. Th 99.7 5.8E-17 1.2E-21 176.4 17.2 155 70-229 2-174 (178)
258 PRK00093 GTP-binding protein D 99.7 1.1E-16 2.3E-21 199.0 21.6 161 67-231 171-344 (435)
259 cd04109 Rab28 Rab28 subfamily. 99.7 1.2E-16 2.7E-21 179.3 19.9 153 70-230 1-165 (215)
260 KOG0464|consensus 99.7 4.8E-18 1.1E-22 191.0 8.3 249 69-323 37-419 (753)
261 cd04140 ARHI_like ARHI subfami 99.7 5.1E-17 1.1E-21 174.5 15.9 153 70-228 2-162 (165)
262 KOG0466|consensus 99.7 1E-17 2.2E-22 182.9 10.3 245 919-1194 35-336 (466)
263 cd01894 EngA1 EngA1 subfamily. 99.7 6E-17 1.3E-21 171.4 16.1 146 73-228 1-155 (157)
264 cd04169 RF3 RF3 subfamily. Pe 99.7 1E-16 2.3E-21 184.7 19.3 116 70-185 3-140 (267)
265 PTZ00369 Ras-like protein; Pro 99.7 6E-17 1.3E-21 178.1 16.6 154 68-230 4-166 (189)
266 cd00879 Sar1 Sar1 subfamily. 99.7 5.1E-17 1.1E-21 178.6 16.0 159 67-228 17-188 (190)
267 cd04116 Rab9 Rab9 subfamily. 99.7 1.4E-16 3E-21 171.7 19.0 153 69-228 5-168 (170)
268 KOG0087|consensus 99.7 1.2E-17 2.6E-22 176.2 10.3 157 65-229 10-174 (222)
269 KOG0079|consensus 99.7 2.4E-17 5.2E-22 162.5 11.7 156 70-231 9-169 (198)
270 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 1.2E-16 2.7E-21 179.9 19.2 158 68-230 12-187 (232)
271 cd04134 Rho3 Rho3 subfamily. 99.7 3.3E-17 7.1E-22 180.2 14.2 159 71-230 2-173 (189)
272 COG1159 Era GTPase [General fu 99.7 3.7E-17 8.1E-22 182.9 14.7 161 922-1114 6-174 (298)
273 smart00176 RAN Ran (Ras-relate 99.7 8.7E-17 1.9E-21 177.8 17.4 148 75-230 1-153 (200)
274 cd03711 Tet_C Tet_C: C-terminu 99.7 1.1E-17 2.3E-22 156.2 8.5 78 1317-1395 1-78 (78)
275 smart00838 EFG_C Elongation fa 99.7 8E-18 1.7E-22 159.7 7.7 80 1315-1395 1-80 (85)
276 cd04126 Rab20 Rab20 subfamily. 99.7 7.5E-17 1.6E-21 180.6 16.8 158 70-230 1-189 (220)
277 smart00175 RAB Rab subfamily o 99.7 1.5E-16 3.3E-21 169.9 18.5 152 70-229 1-160 (164)
278 KOG1144|consensus 99.7 1.2E-17 2.6E-22 199.7 10.8 226 923-1176 476-752 (1064)
279 cd04158 ARD1 ARD1 subfamily. 99.7 6.5E-17 1.4E-21 174.5 15.7 153 71-229 1-159 (169)
280 KOG0080|consensus 99.7 1.2E-17 2.6E-22 167.0 9.0 156 68-229 10-172 (209)
281 cd04097 mtEFG1_C mtEFG1_C: C-t 99.7 1.3E-17 2.7E-22 155.7 8.7 78 1317-1395 1-78 (78)
282 COG0486 ThdF Predicted GTPase 99.7 8.6E-17 1.9E-21 189.8 17.7 262 806-1114 60-378 (454)
283 cd01862 Rab7 Rab7 subfamily. 99.7 2.1E-16 4.6E-21 170.2 19.3 154 70-230 1-166 (172)
284 COG0486 ThdF Predicted GTPase 99.7 1.4E-16 2.9E-21 188.2 19.1 168 51-230 199-375 (454)
285 cd04144 Ras2 Ras2 subfamily. 99.7 9.9E-17 2.2E-21 176.5 16.8 152 71-229 1-161 (190)
286 PTZ00133 ADP-ribosylation fact 99.7 1.2E-16 2.6E-21 174.6 17.1 154 68-228 16-175 (182)
287 PRK04213 GTP-binding protein; 99.7 1.7E-16 3.7E-21 176.1 18.6 156 68-229 8-190 (201)
288 cd01879 FeoB Ferrous iron tran 99.7 5.8E-17 1.3E-21 171.9 14.1 146 74-229 1-155 (158)
289 cd04161 Arl2l1_Arl13_like Arl2 99.7 1.3E-16 2.9E-21 171.8 16.9 153 71-227 1-165 (167)
290 cd04114 Rab30 Rab30 subfamily. 99.7 2E-16 4.4E-21 170.1 18.3 153 68-228 6-166 (169)
291 cd04101 RabL4 RabL4 (Rab-like4 99.7 1E-16 2.2E-21 171.6 15.8 152 70-229 1-162 (164)
292 cd04115 Rab33B_Rab33A Rab33B/R 99.7 2.7E-16 5.9E-21 169.7 19.3 154 68-229 1-167 (170)
293 PRK09518 bifunctional cytidyla 99.7 1.8E-16 3.8E-21 206.8 21.0 162 67-231 448-621 (712)
294 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.1E-16 2.5E-21 173.4 16.1 152 69-227 15-172 (174)
295 cd04132 Rho4_like Rho4-like su 99.7 2.4E-16 5.1E-21 172.8 18.8 157 70-230 1-166 (187)
296 cd04135 Tc10 TC10 subfamily. 99.7 9.7E-17 2.1E-21 173.5 15.4 157 70-229 1-172 (174)
297 cd04110 Rab35 Rab35 subfamily. 99.7 1.8E-16 3.9E-21 175.8 17.8 154 69-230 6-166 (199)
298 cd00878 Arf_Arl Arf (ADP-ribos 99.7 8.3E-17 1.8E-21 171.2 14.5 151 71-228 1-157 (158)
299 cd01871 Rac1_like Rac1-like su 99.7 1.7E-16 3.7E-21 172.1 17.1 157 70-228 2-172 (174)
300 cd04125 RabA_like RabA-like su 99.7 2.2E-16 4.9E-21 173.3 18.1 153 70-230 1-161 (188)
301 cd04176 Rap2 Rap2 subgroup. T 99.7 1.2E-16 2.6E-21 170.9 15.5 150 70-228 2-160 (163)
302 cd01860 Rab5_related Rab5-rela 99.7 2.8E-16 6E-21 167.9 18.3 152 70-229 2-161 (163)
303 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.1E-16 2.4E-21 170.5 15.1 151 71-227 1-158 (160)
304 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.1E-16 2.3E-21 172.0 14.9 151 72-227 2-162 (164)
305 PLN03110 Rab GTPase; Provision 99.7 1.1E-16 2.4E-21 179.7 15.5 154 68-229 11-172 (216)
306 cd01898 Obg Obg subfamily. Th 99.7 1.4E-16 3.1E-21 171.3 15.8 151 71-228 2-168 (170)
307 cd01895 EngA2 EngA2 subfamily. 99.7 3.5E-16 7.6E-21 168.0 18.8 157 68-228 1-172 (174)
308 PF02421 FeoB_N: Ferrous iron 99.7 3.9E-17 8.4E-22 171.1 10.5 146 924-1107 2-156 (156)
309 cd04118 Rab24 Rab24 subfamily. 99.7 1.9E-16 4.2E-21 174.5 16.1 156 70-230 1-165 (193)
310 cd04142 RRP22 RRP22 subfamily. 99.7 2.1E-16 4.6E-21 174.9 16.0 156 70-230 1-173 (198)
311 cd01893 Miro1 Miro1 subfamily. 99.7 2.1E-16 4.4E-21 170.0 15.5 155 71-229 2-162 (166)
312 cd01863 Rab18 Rab18 subfamily. 99.7 3.1E-16 6.6E-21 167.3 16.7 151 70-228 1-159 (161)
313 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.2E-16 2.6E-21 171.5 13.5 161 924-1109 1-166 (167)
314 smart00178 SAR Sar1p-like memb 99.7 3.2E-16 6.9E-21 171.6 16.7 159 67-228 15-182 (184)
315 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 3.1E-16 6.7E-21 175.8 16.6 158 70-230 2-175 (222)
316 cd04143 Rhes_like Rhes_like su 99.7 2.9E-16 6.3E-21 179.2 16.7 156 70-231 1-171 (247)
317 TIGR00436 era GTP-binding prot 99.7 2.9E-16 6.3E-21 182.3 16.9 157 924-1115 2-167 (270)
318 cd04159 Arl10_like Arl10-like 99.7 3.5E-16 7.6E-21 165.2 16.0 150 72-227 2-157 (159)
319 KOG0093|consensus 99.7 1.6E-16 3.5E-21 156.7 12.2 154 69-230 21-182 (193)
320 cd04096 eEF2_snRNP_like_C eEF2 99.7 4.3E-17 9.3E-22 153.0 7.9 79 1317-1395 1-80 (80)
321 cd04123 Rab21 Rab21 subfamily. 99.7 4.9E-16 1.1E-20 165.3 17.0 151 70-228 1-159 (162)
322 cd01894 EngA1 EngA1 subfamily. 99.7 2.3E-16 5E-21 166.9 14.3 149 926-1111 1-157 (157)
323 smart00174 RHO Rho (Ras homolo 99.7 3.8E-16 8.2E-21 168.9 16.2 154 72-229 1-170 (174)
324 cd04111 Rab39 Rab39 subfamily. 99.7 3.6E-16 7.8E-21 174.9 16.3 152 70-229 3-164 (211)
325 PRK05291 trmE tRNA modificatio 99.7 1.8E-16 3.9E-21 195.7 15.2 150 64-229 210-368 (449)
326 cd01885 EF2 EF2 (for archaea a 99.7 1.7E-16 3.6E-21 177.6 13.3 111 71-181 2-138 (222)
327 cd04177 RSR1 RSR1 subgroup. R 99.7 3.8E-16 8.3E-21 168.2 15.7 154 70-229 2-162 (168)
328 PRK15494 era GTPase Era; Provi 99.7 2.9E-16 6.2E-21 187.4 16.2 160 921-1114 51-218 (339)
329 cd00154 Rab Rab family. Rab G 99.7 9.1E-16 2E-20 161.9 18.3 150 70-227 1-158 (159)
330 cd01878 HflX HflX subfamily. 99.7 4.3E-16 9.3E-21 173.4 16.5 148 69-228 41-202 (204)
331 PLN03118 Rab family protein; P 99.7 9.3E-16 2E-20 171.7 18.9 154 68-230 13-176 (211)
332 TIGR03156 GTP_HflX GTP-binding 99.7 5.2E-16 1.1E-20 185.4 17.8 147 69-228 189-349 (351)
333 cd04147 Ras_dva Ras-dva subfam 99.7 3.2E-16 7E-21 173.6 14.9 156 71-231 1-163 (198)
334 cd04155 Arl3 Arl3 subfamily. 99.7 4.6E-16 1E-20 168.1 15.8 155 67-228 12-172 (173)
335 cd04139 RalA_RalB RalA/RalB su 99.7 7.1E-16 1.5E-20 164.5 16.7 151 70-229 1-160 (164)
336 KOG0086|consensus 99.7 2.1E-16 4.6E-21 156.4 11.5 154 68-227 8-167 (214)
337 cd01870 RhoA_like RhoA-like su 99.7 5.3E-16 1.1E-20 167.9 15.8 156 70-229 2-173 (175)
338 TIGR03598 GTPase_YsxC ribosome 99.7 8.1E-16 1.8E-20 167.6 17.3 148 67-220 16-179 (179)
339 cd04137 RheB Rheb (Ras Homolog 99.7 5.7E-16 1.2E-20 168.7 16.0 155 70-233 2-165 (180)
340 cd04164 trmE TrmE (MnmE, ThdF, 99.7 7.6E-16 1.6E-20 162.8 16.4 144 70-228 2-154 (157)
341 cd04130 Wrch_1 Wrch-1 subfamil 99.7 8E-16 1.7E-20 166.6 16.9 155 70-228 1-171 (173)
342 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.7 9.2E-17 2E-21 150.0 7.8 78 1317-1395 1-78 (78)
343 PLN03108 Rab family protein; P 99.7 8.4E-16 1.8E-20 171.9 17.1 154 69-230 6-167 (210)
344 cd01892 Miro2 Miro2 subfamily. 99.7 4.7E-16 1E-20 167.8 14.5 156 67-229 2-164 (169)
345 PRK00089 era GTPase Era; Revie 99.7 7E-16 1.5E-20 181.5 16.8 156 67-229 3-169 (292)
346 cd04098 eEF2_C_snRNP eEF2_C_sn 99.7 1.4E-16 3.1E-21 149.0 8.0 79 1317-1395 1-80 (80)
347 PRK09518 bifunctional cytidyla 99.7 1.5E-15 3.2E-20 198.2 20.5 152 68-229 274-434 (712)
348 cd03702 IF2_mtIF2_II This fami 99.7 5.5E-16 1.2E-20 148.4 11.9 94 243-336 1-94 (95)
349 cd01514 Elongation_Factor_C El 99.7 2E-16 4.3E-21 148.2 8.6 79 1317-1395 1-79 (79)
350 TIGR00231 small_GTP small GTP- 99.7 1.1E-15 2.5E-20 160.5 14.9 149 70-226 2-159 (161)
351 PRK05291 trmE tRNA modificatio 99.7 8.7E-16 1.9E-20 189.7 16.2 150 921-1113 214-371 (449)
352 PF00071 Ras: Ras family; Int 99.7 2.3E-15 5.1E-20 160.7 17.4 151 71-229 1-159 (162)
353 cd01895 EngA2 EngA2 subfamily. 99.7 1.4E-15 3E-20 163.4 15.8 157 922-1109 2-172 (174)
354 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.7E-15 3.6E-20 186.1 17.9 152 64-229 198-358 (442)
355 cd04146 RERG_RasL11_like RERG/ 99.6 8.4E-16 1.8E-20 164.9 13.4 150 71-229 1-162 (165)
356 cd04170 EF-G_bact Elongation f 99.6 2.5E-15 5.4E-20 174.5 18.1 116 71-186 1-134 (268)
357 cd00157 Rho Rho (Ras homology) 99.6 1.8E-15 3.8E-20 162.9 15.7 154 70-227 1-169 (171)
358 KOG0463|consensus 99.6 8.4E-16 1.8E-20 171.6 13.2 232 69-303 133-433 (641)
359 COG0218 Predicted GTPase [Gene 99.6 5.7E-15 1.2E-19 157.5 18.9 157 68-229 23-195 (200)
360 TIGR02528 EutP ethanolamine ut 99.6 1.3E-15 2.8E-20 159.1 13.6 134 71-227 2-141 (142)
361 cd00876 Ras Ras family. The R 99.6 2.2E-15 4.8E-20 159.9 15.3 149 71-228 1-158 (160)
362 PRK12299 obgE GTPase CgtA; Rev 99.6 4.9E-15 1.1E-19 175.6 19.5 155 70-230 159-327 (335)
363 cd04167 Snu114p Snu114p subfam 99.6 2E-15 4.4E-20 169.2 14.6 111 71-181 2-136 (213)
364 cd04103 Centaurin_gamma Centau 99.6 1.9E-15 4.2E-20 161.2 13.8 148 71-228 2-156 (158)
365 PRK00454 engB GTP-binding prot 99.6 8.9E-15 1.9E-19 161.5 19.1 155 67-229 22-192 (196)
366 cd01898 Obg Obg subfamily. Th 99.6 3.1E-15 6.7E-20 161.0 14.5 153 924-1110 2-169 (170)
367 cd04148 RGK RGK subfamily. Th 99.6 5.9E-15 1.3E-19 166.3 17.4 152 70-231 1-163 (221)
368 PRK15467 ethanolamine utilizat 99.6 2.8E-15 6.1E-20 159.9 13.6 139 71-229 3-145 (158)
369 cd01897 NOG NOG1 is a nucleola 99.6 4E-15 8.6E-20 159.9 14.7 153 923-1111 1-167 (168)
370 KOG0088|consensus 99.6 4.9E-16 1.1E-20 154.8 6.8 155 68-228 12-172 (218)
371 cd01873 RhoBTB RhoBTB subfamil 99.6 1.9E-15 4E-20 166.8 12.1 153 70-228 3-193 (195)
372 KOG1143|consensus 99.6 3E-15 6.5E-20 167.5 13.7 253 69-322 167-490 (591)
373 cd04163 Era Era subfamily. Er 99.6 1.6E-14 3.4E-19 153.8 18.7 156 68-228 2-166 (168)
374 cd01881 Obg_like The Obg-like 99.6 3.9E-15 8.5E-20 160.9 13.7 148 74-227 1-173 (176)
375 PRK11058 GTPase HflX; Provisio 99.6 6.6E-15 1.4E-19 179.8 17.0 148 70-229 198-360 (426)
376 TIGR02729 Obg_CgtA Obg family 99.6 9.7E-15 2.1E-19 173.0 17.3 153 69-228 157-326 (329)
377 cd01864 Rab19 Rab19 subfamily. 99.6 6.2E-15 1.4E-19 158.1 14.3 157 921-1110 2-164 (165)
378 cd04157 Arl6 Arl6 subfamily. 99.6 5.3E-15 1.1E-19 157.7 13.6 154 924-1109 1-161 (162)
379 cd04154 Arl2 Arl2 subfamily. 99.6 4.9E-15 1.1E-19 160.4 12.8 155 921-1109 13-172 (173)
380 cd04129 Rho2 Rho2 subfamily. 99.6 5.1E-15 1.1E-19 162.5 13.0 157 70-230 2-172 (187)
381 PF00025 Arf: ADP-ribosylation 99.6 4.4E-15 9.5E-20 161.2 12.3 157 67-229 12-174 (175)
382 cd03690 Tet_II Tet_II: This su 99.6 2.9E-15 6.4E-20 142.0 9.6 85 1119-1208 1-85 (85)
383 PRK15467 ethanolamine utilizat 99.6 4.1E-15 8.8E-20 158.7 11.8 143 923-1113 2-148 (158)
384 cd04164 trmE TrmE (MnmE, ThdF, 99.6 9.7E-15 2.1E-19 154.3 14.5 147 923-1111 2-156 (157)
385 PRK09554 feoB ferrous iron tra 99.6 1.3E-14 2.8E-19 188.1 18.5 152 68-229 2-166 (772)
386 cd04124 RabL2 RabL2 subfamily. 99.6 7.9E-15 1.7E-19 156.9 13.8 154 924-1112 2-158 (161)
387 PRK12296 obgE GTPase CgtA; Rev 99.6 1.9E-14 4.2E-19 176.1 18.8 157 69-232 159-341 (500)
388 cd01879 FeoB Ferrous iron tran 99.6 5.7E-15 1.2E-19 156.6 12.5 147 927-1110 1-155 (158)
389 PRK00089 era GTPase Era; Revie 99.6 1.5E-14 3.3E-19 170.1 17.3 160 922-1113 5-172 (292)
390 COG2229 Predicted GTPase [Gene 99.6 2E-14 4.3E-19 149.7 15.5 168 922-1113 10-180 (187)
391 KOG0083|consensus 99.6 6.4E-16 1.4E-20 149.6 4.1 181 74-262 2-189 (192)
392 TIGR03598 GTPase_YsxC ribosome 99.6 7.7E-15 1.7E-19 159.9 13.1 155 912-1088 8-176 (179)
393 KOG1423|consensus 99.6 1E-14 2.3E-19 161.1 14.0 172 64-237 67-277 (379)
394 PRK12297 obgE GTPase CgtA; Rev 99.6 2.3E-14 5E-19 173.8 18.5 151 70-230 159-326 (424)
395 cd00880 Era_like Era (E. coli 99.6 1.5E-14 3.2E-19 152.2 14.7 152 74-228 1-161 (163)
396 COG1084 Predicted GTPase [Gene 99.6 1E-14 2.3E-19 164.3 14.1 172 832-1051 106-294 (346)
397 PTZ00132 GTP-binding nuclear p 99.6 4.4E-14 9.5E-19 158.7 19.3 155 68-230 8-167 (215)
398 PRK12298 obgE GTPase CgtA; Rev 99.6 1.8E-14 3.9E-19 174.0 16.9 156 70-230 160-332 (390)
399 cd04151 Arl1 Arl1 subfamily. 99.6 8.9E-15 1.9E-19 155.8 12.6 152 924-1109 1-157 (158)
400 TIGR00437 feoB ferrous iron tr 99.6 9.6E-15 2.1E-19 185.5 15.1 144 76-229 1-153 (591)
401 cd03701 IF2_IF5B_II IF2_IF5B_I 99.6 9.5E-15 2E-19 140.8 11.5 94 243-336 1-94 (95)
402 cd01860 Rab5_related Rab5-rela 99.6 1.3E-14 2.8E-19 155.0 13.4 158 923-1112 2-163 (163)
403 cd03692 mtIF2_IVc mtIF2_IVc: t 99.6 4.6E-15 9.9E-20 140.2 8.8 78 474-551 1-78 (84)
404 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 1.1E-14 2.4E-19 159.3 12.8 161 923-1112 4-170 (183)
405 COG2229 Predicted GTPase [Gene 99.6 5.8E-14 1.3E-18 146.2 17.2 158 66-229 7-176 (187)
406 cd04145 M_R_Ras_like M-Ras/R-R 99.6 2.2E-14 4.8E-19 153.3 14.3 156 923-1111 3-163 (164)
407 KOG0091|consensus 99.6 5.7E-15 1.2E-19 148.4 8.7 155 69-229 8-171 (213)
408 PRK09554 feoB ferrous iron tra 99.6 1.8E-14 3.8E-19 186.9 15.6 152 923-1112 4-168 (772)
409 cd04113 Rab4 Rab4 subfamily. 99.6 2E-14 4.4E-19 153.4 12.8 155 924-1110 2-160 (161)
410 cd04102 RabL3 RabL3 (Rab-like3 99.6 4.6E-14 9.9E-19 156.1 15.9 146 70-217 1-176 (202)
411 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.1E-14 4.5E-19 152.8 12.2 152 924-1109 1-157 (158)
412 cd04092 mtEFG2_II_like mtEFG2_ 99.5 1.9E-14 4.1E-19 136.1 9.7 83 1122-1208 1-83 (83)
413 cd00879 Sar1 Sar1 subfamily. 99.5 2E-14 4.3E-19 158.0 11.4 158 922-1111 19-190 (190)
414 KOG1191|consensus 99.5 2.7E-14 5.8E-19 167.6 12.8 177 51-231 250-450 (531)
415 cd04149 Arf6 Arf6 subfamily. 99.5 4.5E-14 9.8E-19 152.3 13.7 154 922-1109 9-167 (168)
416 cd04163 Era Era subfamily. Er 99.5 8.3E-14 1.8E-18 148.2 15.6 158 922-1111 3-168 (168)
417 cd01861 Rab6 Rab6 subfamily. 99.5 6E-14 1.3E-18 149.5 14.4 153 924-1110 2-160 (161)
418 smart00175 RAB Rab subfamily o 99.5 5.8E-14 1.3E-18 149.9 14.3 155 924-1112 2-162 (164)
419 KOG0459|consensus 99.5 2E-14 4.3E-19 163.7 10.9 247 67-316 77-383 (501)
420 PRK04213 GTP-binding protein; 99.5 5.8E-14 1.3E-18 155.9 14.5 162 921-1115 8-195 (201)
421 PRK00454 engB GTP-binding prot 99.5 7E-14 1.5E-18 154.4 15.0 164 915-1112 17-194 (196)
422 TIGR00450 mnmE_trmE_thdF tRNA 99.5 6.2E-14 1.3E-18 172.3 16.0 257 806-1111 50-359 (442)
423 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 5.1E-14 1.1E-18 152.7 13.5 154 922-1109 15-173 (174)
424 KOG0097|consensus 99.5 4.7E-14 1E-18 137.8 11.6 149 70-227 12-169 (215)
425 smart00173 RAS Ras subfamily o 99.5 3.9E-14 8.5E-19 151.5 12.3 156 924-1112 2-162 (164)
426 cd01878 HflX HflX subfamily. 99.5 7.6E-14 1.6E-18 155.4 14.7 153 920-1111 39-204 (204)
427 cd04114 Rab30 Rab30 subfamily. 99.5 7E-14 1.5E-18 150.4 13.8 157 921-1111 6-168 (169)
428 TIGR00231 small_GTP small GTP- 99.5 2.2E-14 4.7E-19 150.7 9.6 149 923-1107 2-159 (161)
429 cd04158 ARD1 ARD1 subfamily. 99.5 6.1E-14 1.3E-18 151.3 13.2 157 924-1113 1-162 (169)
430 cd04161 Arl2l1_Arl13_like Arl2 99.5 4.9E-14 1.1E-18 151.8 12.4 160 924-1109 1-166 (167)
431 smart00178 SAR Sar1p-like memb 99.5 5.8E-14 1.3E-18 153.7 13.2 158 921-1110 16-183 (184)
432 PRK12299 obgE GTPase CgtA; Rev 99.5 1.1E-13 2.3E-18 164.3 16.1 160 920-1113 156-329 (335)
433 cd01862 Rab7 Rab7 subfamily. 99.5 8.8E-14 1.9E-18 149.9 13.9 155 924-1111 2-166 (172)
434 cd04106 Rab23_lke Rab23-like s 99.5 9.4E-14 2E-18 148.2 14.0 153 924-1110 2-161 (162)
435 cd04147 Ras_dva Ras-dva subfam 99.5 5.5E-14 1.2E-18 155.8 12.6 158 924-1114 1-165 (198)
436 KOG0466|consensus 99.5 1.3E-14 2.8E-19 158.9 7.2 234 69-306 38-336 (466)
437 cd01866 Rab2 Rab2 subfamily. 99.5 1.1E-13 2.4E-18 149.1 14.5 158 922-1111 4-165 (168)
438 cd04138 H_N_K_Ras_like H-Ras/N 99.5 1.1E-13 2.5E-18 147.1 14.3 153 923-1111 2-161 (162)
439 TIGR02729 Obg_CgtA Obg family 99.5 1E-13 2.3E-18 164.3 15.4 157 920-1111 155-328 (329)
440 cd04150 Arf1_5_like Arf1-Arf5- 99.5 1.5E-13 3.3E-18 146.8 14.7 152 924-1109 2-158 (159)
441 cd04105 SR_beta Signal recogni 99.5 1.7E-13 3.6E-18 152.4 15.6 157 70-227 1-201 (203)
442 cd00154 Rab Rab family. Rab G 99.5 1.1E-13 2.3E-18 146.0 13.4 153 924-1108 2-158 (159)
443 cd01865 Rab3 Rab3 subfamily. 99.5 9.8E-14 2.1E-18 149.0 13.2 158 923-1112 2-163 (165)
444 PRK12298 obgE GTPase CgtA; Rev 99.5 1.2E-13 2.7E-18 166.8 15.5 160 921-1113 158-334 (390)
445 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 1.2E-13 2.6E-18 148.2 13.8 156 922-1111 2-163 (166)
446 COG0218 Predicted GTPase [Gene 99.5 1.9E-13 4.1E-18 145.9 14.8 166 916-1112 18-197 (200)
447 cd01867 Rab8_Rab10_Rab13_like 99.5 1.4E-13 3E-18 148.1 14.0 156 922-1111 3-164 (167)
448 cd04159 Arl10_like Arl10-like 99.5 1.2E-13 2.6E-18 145.9 13.3 152 925-1109 2-158 (159)
449 COG0370 FeoB Fe2+ transport sy 99.5 1.4E-13 3E-18 169.2 15.5 153 69-230 3-163 (653)
450 cd00882 Ras_like_GTPase Ras-li 99.5 1.5E-13 3.3E-18 142.6 13.7 149 74-227 1-156 (157)
451 cd01896 DRG The developmentall 99.5 3.1E-13 6.7E-18 153.3 17.3 146 71-229 2-224 (233)
452 PF10662 PduV-EutP: Ethanolami 99.5 1.1E-13 2.4E-18 141.9 12.2 134 71-227 3-142 (143)
453 cd01863 Rab18 Rab18 subfamily. 99.5 9E-14 1.9E-18 148.3 12.1 154 924-1110 2-160 (161)
454 cd01876 YihA_EngB The YihA (En 99.5 4.8E-13 1E-17 142.8 17.7 151 72-228 2-168 (170)
455 cd00880 Era_like Era (E. coli 99.5 2.1E-13 4.6E-18 143.3 14.6 154 927-1110 1-162 (163)
456 cd03691 BipA_TypA_II BipA_TypA 99.5 7.4E-14 1.6E-18 133.1 10.0 86 1122-1208 1-86 (86)
457 cd04156 ARLTS1 ARLTS1 subfamil 99.5 1.2E-13 2.6E-18 147.1 12.7 153 924-1109 1-159 (160)
458 cd04088 EFG_mtEFG_II EFG_mtEFG 99.5 6.9E-14 1.5E-18 132.4 9.6 83 1122-1208 1-83 (83)
459 PRK12296 obgE GTPase CgtA; Rev 99.5 2.1E-13 4.6E-18 167.1 16.4 158 920-1112 157-340 (500)
460 smart00177 ARF ARF-like small 99.5 1.9E-13 4.1E-18 148.4 14.3 156 922-1111 13-173 (175)
461 cd01881 Obg_like The Obg-like 99.5 8.8E-14 1.9E-18 150.3 11.6 150 927-1110 1-175 (176)
462 KOG0075|consensus 99.5 1.1E-13 2.5E-18 137.0 11.1 157 70-231 21-182 (186)
463 cd00877 Ran Ran (Ras-related n 99.5 1.7E-13 3.7E-18 147.5 13.6 155 924-1112 2-159 (166)
464 TIGR03156 GTP_HflX GTP-binding 99.5 1.1E-13 2.5E-18 165.3 13.4 150 921-1110 188-350 (351)
465 PLN03118 Rab family protein; P 99.5 1.8E-13 4E-18 153.2 14.2 158 922-1112 14-177 (211)
466 cd04119 RJL RJL (RabJ-Like) su 99.5 2.4E-13 5.1E-18 145.6 14.4 156 924-1111 2-166 (168)
467 cd04140 ARHI_like ARHI subfami 99.5 2E-13 4.3E-18 146.6 13.7 155 923-1110 2-163 (165)
468 PLN00223 ADP-ribosylation fact 99.5 2E-13 4.4E-18 149.0 14.0 156 922-1111 17-177 (181)
469 PTZ00369 Ras-like protein; Pro 99.5 1.6E-13 3.5E-18 150.9 13.1 158 922-1112 5-167 (189)
470 PRK12297 obgE GTPase CgtA; Rev 99.5 2.5E-13 5.5E-18 164.8 15.8 154 921-1112 157-327 (424)
471 cd03689 RF3_II RF3_II: this su 99.5 1E-13 2.2E-18 131.3 9.7 81 1124-1208 1-84 (85)
472 cd04122 Rab14 Rab14 subfamily. 99.5 2.1E-13 4.5E-18 146.5 13.2 157 923-1111 3-163 (166)
473 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 3.1E-13 6.7E-18 150.2 14.9 157 924-1113 2-169 (201)
474 cd01868 Rab11_like Rab11-like. 99.5 2.3E-13 5E-18 145.8 13.4 156 922-1111 3-164 (165)
475 cd04155 Arl3 Arl3 subfamily. 99.5 1.5E-13 3.2E-18 148.5 12.0 155 921-1109 13-172 (173)
476 cd04139 RalA_RalB RalA/RalB su 99.5 1.9E-13 4.1E-18 145.8 12.6 155 924-1111 2-161 (164)
477 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 2.3E-13 4.9E-18 146.2 13.3 159 925-1109 2-163 (164)
478 KOG0081|consensus 99.5 1.5E-14 3.2E-19 144.4 3.6 153 71-229 11-179 (219)
479 cd01893 Miro1 Miro1 subfamily. 99.5 3.1E-13 6.7E-18 145.3 13.9 157 924-1111 2-163 (166)
480 KOG0395|consensus 99.5 2.7E-13 5.9E-18 148.9 13.6 157 68-231 2-165 (196)
481 cd04136 Rap_like Rap-like subf 99.5 2.7E-13 5.9E-18 144.7 13.2 154 923-1111 2-162 (163)
482 cd04115 Rab33B_Rab33A Rab33B/R 99.5 3.9E-13 8.5E-18 145.1 14.6 159 922-1111 2-168 (170)
483 cd04175 Rap1 Rap1 subgroup. T 99.5 5.1E-13 1.1E-17 143.0 15.0 153 924-1111 3-162 (164)
484 KOG0073|consensus 99.5 8.8E-13 1.9E-17 133.8 15.4 157 67-229 14-176 (185)
485 cd00876 Ras Ras family. The R 99.5 3.3E-13 7.2E-18 143.2 13.0 153 924-1111 1-160 (160)
486 KOG1423|consensus 99.5 5.9E-13 1.3E-17 147.4 15.0 168 920-1114 70-273 (379)
487 PTZ00133 ADP-ribosylation fact 99.5 4.4E-13 9.6E-18 146.5 14.1 156 922-1111 17-177 (182)
488 cd04116 Rab9 Rab9 subfamily. 99.5 5.2E-13 1.1E-17 143.9 14.3 158 921-1110 4-169 (170)
489 cd04112 Rab26 Rab26 subfamily. 99.5 3.9E-13 8.6E-18 148.1 13.5 160 924-1114 2-165 (191)
490 PRK11058 GTPase HflX; Provisio 99.5 3.1E-13 6.7E-18 165.2 13.9 154 921-1113 196-363 (426)
491 cd04142 RRP22 RRP22 subfamily. 99.5 5.4E-13 1.2E-17 147.8 14.5 156 924-1112 2-174 (198)
492 COG1100 GTPase SAR1 and relate 99.5 7.9E-13 1.7E-17 148.7 16.0 161 70-230 6-184 (219)
493 cd04127 Rab27A Rab27a subfamil 99.5 5.2E-13 1.1E-17 145.3 14.1 157 921-1111 3-176 (180)
494 cd04091 mtEFG1_II_like mtEFG1_ 99.5 2.3E-13 5E-18 128.0 9.7 81 1122-1208 1-81 (81)
495 cd04177 RSR1 RSR1 subgroup. R 99.5 3.3E-13 7.3E-18 145.3 12.4 155 924-1112 3-164 (168)
496 cd04123 Rab21 Rab21 subfamily. 99.5 5.4E-13 1.2E-17 141.9 13.7 156 924-1111 2-161 (162)
497 cd04137 RheB Rheb (Ras Homolog 99.5 6.1E-13 1.3E-17 144.8 14.3 154 923-1111 2-162 (180)
498 cd04110 Rab35 Rab35 subfamily. 99.5 5.4E-13 1.2E-17 148.0 14.0 158 921-1112 5-167 (199)
499 TIGR02528 EutP ethanolamine ut 99.5 2E-13 4.3E-18 142.6 9.9 136 924-1108 2-141 (142)
500 cd04144 Ras2 Ras2 subfamily. 99.5 3.6E-13 7.8E-18 148.3 12.4 156 924-1114 1-165 (190)
No 1
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-174 Score=1465.55 Aligned_cols=600 Identities=59% Similarity=0.987 Sum_probs=592.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
..+||||||+|+|||||||+++||+|+|+++..+.+.+++||++++|+||||||.++++.+.|++++|||+|||||+||+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
+|++|.|+|+|+|+|+|||.+|++|||++++++|++.|+++|||+||+|+++|++++++++++++|.++++.++|++||+
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPi 162 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPI 162 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecC
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 1159 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~ 1159 (1527)
+|+||+.|++..+......++.+||++|++++|+|..+.++||+|+|+.++|++|+||+++|||++|++++||.|.++..
T Consensus 163 vYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~ 242 (603)
T COG1217 163 VYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKS 242 (603)
T ss_pred EEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcC
Confidence 99999999999988888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCC
Q psy1758 1160 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGR 1239 (1527)
Q Consensus 1160 ~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~ 1239 (1527)
+|+....||++++.|.|.+|.++++|.|||||||+|++++.+|||+|+++++++||.+++++||++|.|.+|+|||+|+
T Consensus 243 -~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~ 321 (603)
T COG1217 243 -DGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSVDEPTLSMTFSVNDSPFAGK 321 (603)
T ss_pred -CCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCCCccCCCCcccCCCceEEEEEecCCCCCCc
Confidence 7888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEecceEeeee
Q psy1758 1240 EGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPY 1319 (1527)
Q Consensus 1240 e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~g~llEP~ 1319 (1527)
|||++|++++++||.+|++.|+||+|+++++++. |.|+|||||||+||+|+|||||||++||+|+|+|||+||+++|||
T Consensus 322 EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~-f~VsGRGELhLsILiE~MRREGfEl~VsrP~Vi~keidG~~~EP~ 400 (603)
T COG1217 322 EGKFVTSRQIRDRLNKELETNVALRVEETESPDA-FEVSGRGELHLSILIENMRREGFELQVSRPEVIIKEIDGVKCEPF 400 (603)
T ss_pred CCceeeHHHHHHHHHHHhhhceeEEEeecCCCCe-EEEeccceeehHHHHHHhhhcceEEEecCceEEEEecCCcCcCcc
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecccccc
Q psy1758 1320 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSK 1399 (1527)
Q Consensus 1320 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~ 1399 (1527)
+.++|+||+||+|.||+.|+.|||+|.+|.+.++||+||+|.+|+|+|+||+++|+|+|+|+|+|+|.|++|+|+.
T Consensus 401 E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~---- 476 (603)
T COG1217 401 EEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVK---- 476 (603)
T ss_pred eeEEecCchhhhhHHHHHHhhhhHhHhhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeeccccccccc----
Confidence 9999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCchhHHHHHHHHhhcCcccccCccccccceeecccCCCCceeeecccccccccccccCCCcceee
Q psy1758 1400 YDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQL 1479 (1527)
Q Consensus 1400 ~~i~~~~~g~li~~~~g~~~~~~l~~~~~rG~~fv~~~~~vy~gm~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~ 1479 (1527)
|+|..|.||+|||+++|+|++|||+++|+||++||.||++||+|||||||||+|||+|||||+||||||||||+|++++|
T Consensus 477 g~i~~R~nGvLiS~~~G~a~~yal~~lqdRG~~Fi~pG~~vYeGmiiG~hsR~nDL~VN~~k~K~LTN~Rasg~Dea~~L 556 (603)
T COG1217 477 GEIGGRHNGVLISNETGKAVAYALFNLQDRGKLFIEPGTKVYEGMIIGEHSRDNDLTVNVLKGKKLTNMRASGKDEAVTL 556 (603)
T ss_pred ccccccccceEEEcCCCcchHhhhhhHHhcCceeecCCCceeeeeEEeeecCccCceeccccccccccccccCCccceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCHHHHHhcccCCeeEEecCCceeeecccCChHHHHhhhcc
Q psy1758 1480 ISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKKLHK 1525 (1527)
Q Consensus 1480 ~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk~~~~~~~~~~~~~~ 1525 (1527)
+||+.||||+|||||+|||||||||+||||||++|++++|||+.|+
T Consensus 557 ~~p~~mtLE~Ale~i~dDElvEVTP~sIRlRK~~L~~n~Rkr~~k~ 602 (603)
T COG1217 557 TPPIRMTLERALEFIADDELVEVTPESIRLRKKILNENERKRAEKR 602 (603)
T ss_pred cCcccccHHHHHhhcCCCceEEecchHeehhhhhcChhhhhhhhcc
Confidence 9999999999999999999999999999999999999999998774
No 2
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=4.2e-143 Score=1341.88 Aligned_cols=594 Identities=57% Similarity=0.961 Sum_probs=574.7
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
+|||||+||+|||||||+++|++++|.+.+.+.+++++||++++|++||+|+.++..++.|+++++||||||||.||.++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence 69999999999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEE
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 1081 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~ 1081 (1527)
++++++++|+++|||||.+|+++||+++|..+.+.++|+|+|+||+|+++++++++.+++.++|..++..++++.+|+++
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~ 160 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVY 160 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEe
Confidence 99999999999999999999999999999999999999999999999998899999999999998887777778899999
Q ss_pred eccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCC
Q psy1758 1082 TSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPD 1161 (1527)
Q Consensus 1082 ~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~ 1161 (1527)
+||++|++..+......|+.+||+.|++++|+|..+.++||+++|+++++++|.|++++|||++|+|++||.|.+.+. +
T Consensus 161 ~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~-~ 239 (594)
T TIGR01394 161 ASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR-D 239 (594)
T ss_pred chhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC-C
Confidence 999999876655555678999999999999999888899999999999999999999999999999999999999877 4
Q ss_pred CCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCCCC
Q psy1758 1162 DKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREG 1241 (1527)
Q Consensus 1162 g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~ 1241 (1527)
++....+|++|+.+.|.++.++++|.|||||+++|++++.+|||||+++++.+||++++++|+++|+|.||++|++|+|+
T Consensus 240 ~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~e~ 319 (594)
T TIGR01394 240 GTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEALPTITVDEPTLSMTFSVNDSPLAGKEG 319 (594)
T ss_pred CceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCccccCCCCCCCCCeEEEEEEecCCCcccccc
Confidence 44345799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEecceEeeeeEE
Q psy1758 1242 KFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYEN 1321 (1527)
Q Consensus 1242 ~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~g~llEP~~~ 1321 (1527)
|++|+++|++||.||+++||||+|++++++++ |+|+|||||||+|++|+|||||+|+++++|+|+|||++|++||||++
T Consensus 320 k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~-~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yrei~g~llEPi~~ 398 (594)
T TIGR01394 320 KKVTSRHIRDRLMRELETNVALRVEDTESADK-FEVSGRGELHLSILIETMRREGFELQVGRPQVIYKEIDGKKLEPIEE 398 (594)
T ss_pred hhhhHHHHHHHHHHhhccCCeEEEEEecCCCe-EEEEEECHHHHHHHHHHHhccCceEEEeCCEEEEEeCCCeEECCEEE
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecccccccc
Q psy1758 1322 LFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYD 1401 (1527)
Q Consensus 1322 ~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~ 1401 (1527)
++|+||+||+|+||++|++|||+|++|++.++++++|+|.+|+|||+||+++|+|+|+|+|+|+++|+||+|++ |+
T Consensus 399 ~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~----~~ 474 (594)
T TIGR01394 399 LTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWK----GE 474 (594)
T ss_pred EEEEechHHHHHHHHHHHHhCCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCC----Cc
Confidence 99999999999999999999999999999767899999999999999999999999999999999999999998 99
Q ss_pred ccccccceeecCCCchhHHHHHHHHhhcCcccccCccccccceeecccCCCCceeeecccccccccccccCCCcceeecC
Q psy1758 1402 LGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLIS 1481 (1527)
Q Consensus 1402 i~~~~~g~li~~~~g~~~~~~l~~~~~rG~~fv~~~~~vy~gm~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~ 1481 (1527)
+..|.||+|||+++|++|+|||+++|+||+|||.||++||+|||||||+|+|||+|||||+||||||||||+|++++|+|
T Consensus 475 i~~~~~g~~~~~~~g~~~~~~~~~~~~rg~~f~~~~~~vy~g~i~g~~~~~~d~~~n~~~~k~~~n~r~~~~~~~~~~~~ 554 (594)
T TIGR01394 475 IETRRNGSLVSMEDGTATAYALWNLQERGVMFVSPGTEVYEGMIIGEHSRENDLDVNPCKAKKLTNVRSSGKDEAVKLTP 554 (594)
T ss_pred CCCCCceeEEECCCCcChHhhhhchhhcccEEeCCCCceeCceEEEeecCcCCcEEecccccccccccccCCCcceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHhcccCCeeEEecCCceeeecccCChHHHHh
Q psy1758 1482 PIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521 (1527)
Q Consensus 1482 ~~~~~~e~~~~~~~~de~~e~tp~~~r~rk~~~~~~~~~~ 1521 (1527)
||.||||+|||||+|||||||||++|||||++|++++|||
T Consensus 555 ~~~~~le~~~~~~~~de~~evtp~~~r~rk~~l~~~~r~~ 594 (594)
T TIGR01394 555 PRKLSLEQALEYIEDDELVEVTPKSIRLRKRVLDPNERKR 594 (594)
T ss_pred CccCCHHHHHhhccCCeEEEECchHeEEehhhCCHhhcCC
Confidence 9999999999999999999999999999999999999975
No 3
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.4e-141 Score=1323.99 Aligned_cols=601 Identities=56% Similarity=0.937 Sum_probs=577.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+++|||+|+||+|||||||+++|++++|.+.+...+.+++||+++.|+++|+|+.++...+.|+++++||||||||.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 57899999999999999999999999999988777778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
+++.++++.+|++|||||+.+|+++||+++|..+.+.++|.|+|+||+|++++++++++++++++|..++....+.++|+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PV 162 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPI 162 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999977766666788999
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecC
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 1159 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~ 1159 (1527)
+++||++|++..+......|+.+||++|++++|+|..+.++||+++||++++++|.|++++|||++|+|++||.|.+.+.
T Consensus 163 i~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~ 242 (607)
T PRK10218 163 VYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS 242 (607)
T ss_pred EEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecC
Confidence 99999999976655555568999999999999999888899999999999999999999999999999999999999866
Q ss_pred CCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCC
Q psy1758 1160 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGR 1239 (1527)
Q Consensus 1160 ~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~ 1239 (1527)
+++...+||++|+.+.|.++.++++|.|||||+++|++++.+|||||+++++.++|++++++|+++|+|.+|+|||+|+
T Consensus 243 -~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~g~ 321 (607)
T PRK10218 243 -EGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGK 321 (607)
T ss_pred -CCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCCCcccCCCCCCCCCeEEEEEEeCCCccccc
Confidence 3433458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEecceEeeee
Q psy1758 1240 EGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPY 1319 (1527)
Q Consensus 1240 e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~g~llEP~ 1319 (1527)
++|++|+++++++|.+|+++||||+|++++++++ |+|+|||||||+|++|+|||||+|+++++|+|+|||++|++||||
T Consensus 322 e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~-~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yret~g~klEPi 400 (607)
T PRK10218 322 EGKFVTSRQILDRLNKELVHNVALRVEETEDADA-FRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPY 400 (607)
T ss_pred hhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCe-EEEEEEcHHHHHHHHHHHHhCCceEEEeCCEEEEEEECCEEeCCe
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecccccc
Q psy1758 1320 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSK 1399 (1527)
Q Consensus 1320 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~ 1399 (1527)
++++|+||+||+|+||++|++|||+|++|++.++++++|+|.+|+|||+||+++|+|+|+|+|+|++.|+||+|++ .
T Consensus 401 ~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~---~ 477 (607)
T PRK10218 401 ENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVR---P 477 (607)
T ss_pred EEEEEEechhhHHHHHHHHHhcCCEEeccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCC---C
Confidence 9999999999999999999999999999998766899999999999999999999999999999999999999998 5
Q ss_pred ccccccccceeecCCCchhHHHHHHHHhhcCcccccCccccccceeecccCCCCceeeecccccccccccccCCCcceee
Q psy1758 1400 YDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQL 1479 (1527)
Q Consensus 1400 ~~i~~~~~g~li~~~~g~~~~~~l~~~~~rG~~fv~~~~~vy~gm~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~ 1479 (1527)
|++..|++|+|||++.|++|+|||+++|+||+|||.||++||+|||||||+|+|||+|||||+||||||||+|+|++++|
T Consensus 478 g~~~~~~~g~~~~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~~~~~~d~~vn~~~~k~~tn~r~~~~~~~~~l 557 (607)
T PRK10218 478 GEVGQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVL 557 (607)
T ss_pred CCCCCccceEEEECCCCcCHHHhhhhhhhccceeecCCCcEecceEEeeecCcCCceeccccccccccccccCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCHHHHHhcccCCeeEEecCCceeeecccCChHHHHhhhcc
Q psy1758 1480 ISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKKLHK 1525 (1527)
Q Consensus 1480 ~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk~~~~~~~~~~~~~~ 1525 (1527)
+|||.||||+|||||+|||||||||++|||||++|++++|||++|.
T Consensus 558 ~~~~~~~le~~~~~~~~de~~evtp~~~r~rk~~l~~~~r~~~~~~ 603 (607)
T PRK10218 558 VPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRA 603 (607)
T ss_pred cCCccCCHHHHHhhccCCeEEEECchHeEEeehhCCHhHHHHhhhc
Confidence 9999999999999999999999999999999999999999998764
No 4
>KOG0462|consensus
Probab=100.00 E-value=5.6e-104 Score=912.28 Aligned_cols=560 Identities=31% Similarity=0.411 Sum_probs=512.4
Q ss_pred cccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC---eEEEEEeC
Q psy1758 916 DENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG---TRINIIDT 992 (1527)
Q Consensus 916 q~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---~~iniiDT 992 (1527)
..|.+++||++||+|+|||||||+++||..+|.+.+.. -.+++||+.++||||||||.++++++.|++ |.+|||||
T Consensus 54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~-~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDT 132 (650)
T KOG0462|consen 54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNI-GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDT 132 (650)
T ss_pred cCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCC-chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecC
Confidence 44568999999999999999999999999999776543 356899999999999999999999999998 99999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
|||.||++||.|.+.+||||||||||.+|+++||.+.+.+|.+.|+.+|.|+||+|++.++++++..+++++|....+
T Consensus 133 PGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~-- 210 (650)
T KOG0462|consen 133 PGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA-- 210 (650)
T ss_pred CCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999854333
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQ 1152 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd 1152 (1527)
+++++||++|+ |++.+|++|++++|+|....++||+|++|++|||.|.|+|+++||.+|.+++||
T Consensus 211 -----~~i~vSAK~G~----------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGd 275 (650)
T KOG0462|consen 211 -----EVIYVSAKTGL----------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGD 275 (650)
T ss_pred -----ceEEEEeccCc----------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCC
Confidence 58999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEec-ceecccCCeeeCCCCCCCCCCCccCCCceeEEEEe
Q psy1758 1153 DVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG-IEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMV 1231 (1527)
Q Consensus 1153 ~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~g-l~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~ 1231 (1527)
.|..+.+ ++.+..++-.++.+..-...+++...+|+|++..+ ++++.+||||++.....++|.++-.+|+.+|+| +
T Consensus 276 kV~~~~t--~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMvF-v 352 (650)
T KOG0462|consen 276 KVQSAAT--GKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMVF-V 352 (650)
T ss_pred EEEEeec--CcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCCCCCCcceEE-e
Confidence 9999987 55566677777666665556666677778887766 889999999999886666777777779999999 8
Q ss_pred cCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCC--CCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCeeeE
Q psy1758 1232 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIF 1308 (1527)
Q Consensus 1232 ~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~--~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~V~y 1308 (1527)
+.+|++|+| +..++++++|+..||.++.+..+.+. ++||+|+|+|+|||+|++|||+|| |+|+.+++|+|+|
T Consensus 353 g~fP~dgsd-----~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Y 427 (650)
T KOG0462|consen 353 GLFPLDGSD-----YETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPY 427 (650)
T ss_pred ccccCccch-----hhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcCceeeecCCcceE
Confidence 999999987 46778999999999999999998654 899999999999999999999999 9999999999999
Q ss_pred EEe--cc------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhc
Q psy1758 1309 KTL--NG------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLI 1368 (1527)
Q Consensus 1309 re~--~g------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~ 1368 (1527)
|-. +| ..||||+.++|.+|+||+|.||++|+.|||++.+|.+.++.++.|.|.+|+|||+
T Consensus 428 r~~~~~~~~~~i~np~~fp~~~~v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~nr~~lky~lPl~elv 507 (650)
T KOG0462|consen 428 RVVYSNGDEILISNPALFPDPSDVKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGNRVMLKYQLPLRELV 507 (650)
T ss_pred EEEecCCceeeecChhhCCCcccchhhcCceEEEEEECcHHHHHHHHHHHHHhhhheecceeccCCeEEEEEecChHHHH
Confidence 974 22 4699999999999999999999999999999999999977899999999999999
Q ss_pred C-hHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHHHHhhcCcccccCccccccceeec
Q psy1758 1369 G-FQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIG 1447 (1527)
Q Consensus 1369 g-~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~~~~~rG~~fv~~~~~vy~gm~~g 1447 (1527)
| |+..|+|.|+|||+|+|+|++|++ +++.+..-+++.++.++.+|.+.+..+++||+.||.++-+.|++|++|
T Consensus 508 ~df~~~lks~tsGyAs~dye~~gY~~------sdLvkldil~n~~~vd~l~tivh~~~a~~rGr~~v~klk~~ip~Q~~e 581 (650)
T KOG0462|consen 508 GDFFDRLKSLTSGYASFDYEDAGYQA------SDLVKLDILLNGKMVDGLSTIVHLSKAESRGREFVQKLKDLIPRQIFE 581 (650)
T ss_pred HHHHHHHhccccceeEEeeccccccc------ccceEEEeeccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhcchhhhh
Confidence 8 999999999999999999999996 668877666666666666666666689999999999999999999999
Q ss_pred ccCCCCceeeecccccccccccccCCCcceeecCCcccCHHHHHhcccCCeeEEecCCceeeec
Q psy1758 1448 IHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRK 1511 (1527)
Q Consensus 1448 ~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk 1511 (1527)
.|.++-|..-|+||++-. +..+|...+|-+|..++++.+|+|..+|++.|+||.+||++|
T Consensus 582 v~iqa~igsk~iare~i~----a~rKdv~akl~ggdv~r~~klL~~q~egkk~mk~vgnI~ipk 641 (650)
T KOG0462|consen 582 VHIQACIGSKNIARETIS----AYRKDVLAKLYGGDVTRLKKLLKKQAEGKKRMKTVGNIRIPK 641 (650)
T ss_pred hhhhhhcccchhhHHHHH----HhccceeeEecCCchhhHHHHHHhhhcCceeeeccccEecCH
Confidence 999999999999999877 899999999999999999999999999999999999999998
No 5
>KOG1145|consensus
Probab=100.00 E-value=1.1e-98 Score=866.40 Aligned_cols=558 Identities=42% Similarity=0.651 Sum_probs=486.2
Q ss_pred CCCHHHHHHHHHhCCCccCc---cccCCHHHHHHHHHhcCCceeecCCCCch-hhhh----hhcccCcccccccCCCEEE
Q psy1758 2 SVKSSVVIKNLMKLGQMVTI---NQVLDQETAMILVEEMGHVAHASKLNDPE-SFLL----NEYNKNITAESLVRAPIVT 73 (1527)
Q Consensus 2 ~~~~~~~i~~l~~~g~~~~~---~~~l~~~~~~~~a~~~g~~~~~~~~~~~~-~~~~----~~l~~~~~~~~~~r~~~V~ 73 (1527)
+....++.+.|...|...++ ...+|.-.+..+++.++............ .+.. ...++.+.....+|||+|+
T Consensus 78 ~~~~~~v~e~l~sv~~a~~~~~~~~~ld~~~I~ev~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~a~p~~l~~RpPVVT 157 (683)
T KOG1145|consen 78 KCSVDEVQEALLSVGFAYNLAIADSNLDTKGILEVVELILMKYRFVLLPAETSVEEKAADVAPQPEADPKLLEPRPPVVT 157 (683)
T ss_pred cCCHHHHHHHHHhccccccccccccccchHHHHHHHHHHhhccccccCChhhhhhhhhhhcccCCccCHhhcCCCCCeEE
Confidence 45667888899888884332 34566555555544444332211111111 0111 1112334556778999999
Q ss_pred EEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG 152 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g 152 (1527)
||||++||||||+++|++..++..+.+||||+++++.+... |..++|+|||||+.|..||.|+++.+|+++||++++||
T Consensus 158 iMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG 237 (683)
T KOG1145|consen 158 IMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG 237 (683)
T ss_pred EeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC
Confidence 99999999999999999999999999999999999998875 45899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHH
Q psy1758 153 VMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEI 232 (1527)
Q Consensus 153 ~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~ 232 (1527)
+++||.+.+.+++..++|+|+++||||+++++++++.+++..++...+++|++++++++||++|.|++.|.+++..+++.
T Consensus 238 VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~ 317 (683)
T KOG1145|consen 238 VMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEV 317 (683)
T ss_pred ccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCC
Q psy1758 233 LELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKV 312 (1527)
Q Consensus 233 ~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~ 312 (1527)
+++++.+..|++++|+|+..++++|.++|++|++|||+.|+.+++|.+++|||.|++++|+.+.+|.||+|+.|.||+++
T Consensus 318 mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~~w~KVr~l~D~nGk~i~~A~Ps~pv~V~Gwkdl 397 (683)
T KOG1145|consen 318 MDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGKSWCKVRALFDHNGKPIDEATPSQPVEVLGWKDL 397 (683)
T ss_pred hhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEechhhhhhhhhhcCCCCccccCCCCceEeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeCChhHHHHHHHHhhhchHHHHH------HHHhhhhh-hhHHH------------hhcc-ccceeEeEEEE
Q psy1758 313 PFSGEELFVILNEKKAREIGLFRQGKFRDVKL------SKQKLHKT-ENMFN------------DINK-EKVKNLLIIIK 372 (1527)
Q Consensus 313 ~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~------------~~~~-~~~~~~~~iiK 372 (1527)
|.+||.++.+++|++|+++.+.|+...+.++. .+.+.... +.+.+ ++.. ...+.+|+|||
T Consensus 398 P~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK 477 (683)
T KOG1145|consen 398 PIAGDEVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIK 477 (683)
T ss_pred CCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEE
Confidence 99999999999999999999988754333221 11111110 11110 0111 12255999999
Q ss_pred eccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHH
Q psy1758 373 TDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNI 452 (1527)
Q Consensus 373 ad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l 452 (1527)
+|++||+||+.++|+.|++++|++++++++||+||++|+++|+++.|+|+||||+.++..+++|++.||+|+.|||||+|
T Consensus 478 ~DV~GS~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~~daiI~~FnV~~~~~~~~~a~~~gVkI~~~nVIY~L 557 (683)
T KOG1145|consen 478 CDVQGSAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQASDAIIYGFNVKASPSVKQLAAAKGVKIRLYNVIYRL 557 (683)
T ss_pred ecccchHHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHhcCcEEEEEecCCChHHHHHHhccCceEeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeeeEeEEEeEEEEcCC---CCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccc
Q psy1758 453 IKEIKSEITNLIPLEKKENLLGLAEIRQVILVNK---VSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDN 529 (1527)
Q Consensus 453 ~~~~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~k---~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~ 529 (1527)
|||+++.|.+.|||..++.++|+|+|++.|.++. +-.||||+|.+|.+++++.+|+.|||++||+|.|.||||.|+|
T Consensus 558 ieDv~~~ls~rlp~v~e~~vvGea~Vl~~F~i~~~rkr~~VAGC~V~~G~~~K~~~~rlvR~g~vV~~G~l~SlKh~Ked 637 (683)
T KOG1145|consen 558 IEDVRELLSERLPPVEEQEVVGEAEVLATFDIREKRKRVPVAGCRVNNGVIKKSCKIRLVRNGKVVFEGELDSLKHLKED 637 (683)
T ss_pred HHHHHHHHHhhCCCceEEeeccceeeeeeEeeccccccccccceEeecceEeecceEEEEeCCcEEEEechhHHhhhhhh
Confidence 9999999999999999999999999999999863 2359999999999999999999999999999999999999999
Q ss_pred cceeecCccccccchhhh-hhhhhhHHhhhhh
Q psy1758 530 VKEVKAGFECERLSRIEN-QIQRDISEIIAFD 560 (1527)
Q Consensus 530 V~ev~~G~ecgr~~r~~~-~i~~~Iseii~~e 560 (1527)
|++|++|.|||+.++.++ +|+.. +.+.+++
T Consensus 638 V~~vkkg~ECGl~~~d~~~~f~~G-D~i~~ye 668 (683)
T KOG1145|consen 638 VTEVKKGHECGLTFDDGNEDFKEG-DKIQCYE 668 (683)
T ss_pred hhhhcCCCeeeeEeccCCcCCCcC-CEEEEee
Confidence 999999999999999998 77764 5444444
No 6
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.7e-94 Score=916.35 Aligned_cols=542 Identities=59% Similarity=0.904 Sum_probs=505.6
Q ss_pred CCCCHHHHHHHHHhCCCccCccccCCHHHHHHHHHhcCCceeecCCCCchhhhhhhcccCcccccccCCCEEEEEecCCC
Q psy1758 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKNITAESLVRAPIVTIMGHVDH 80 (1527)
Q Consensus 1 ~~~~~~~~i~~l~~~g~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~V~IvG~~~~ 80 (1527)
|++++.+||+.||.+|+++++||.||.+.++++|++||+........+ .....+...|+|+|+++||+||
T Consensus 232 ~~~~~~~ii~~l~~~g~~~~~n~~l~~~~~~~i~~e~g~~~~~~~~~~----------~~~~~~~~~R~pvV~ImGhvd~ 301 (787)
T PRK05306 232 MAVKAAEVIKKLFKLGVMATINQSLDQETAELLAEEFGHEVKLVSLLE----------DDDEEDLVPRPPVVTIMGHVDH 301 (787)
T ss_pred HCCCHHHHHHHHHHcCCeecCCCccCHHHHHHHHHHcCCEEEEccccc----------cccccccccCCCEEEEECCCCC
Confidence 789999999999999999999999999999999999999876543322 1123356789999999999999
Q ss_pred ChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHH
Q psy1758 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREA 160 (1527)
Q Consensus 81 GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~ 160 (1527)
|||||+++|+...+..++.+|+|++++.+.+.+++..++|||||||++|..++.++++.+|++|||||+++++.+||.++
T Consensus 302 GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~ 381 (787)
T PRK05306 302 GKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEA 381 (787)
T ss_pred CHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHH
Confidence 99999999999988888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCC
Q psy1758 161 IAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240 (1527)
Q Consensus 161 i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~ 240 (1527)
|.++...++|+|||+||+|+...+.+.+..++.......+.|++.++++++||++|.||++|+++|....+..+++.+++
T Consensus 382 i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~~e~~~l~~~~~ 461 (787)
T PRK05306 382 INHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQAEVLELKANPD 461 (787)
T ss_pred HHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhhhhhhhcccCCC
Confidence 99999999999999999999877777776666666666677887889999999999999999999988776667777788
Q ss_pred CCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEE
Q psy1758 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELF 320 (1527)
Q Consensus 241 ~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~ 320 (1527)
.|+.+.|++++.+++.|++++++|++|+|++||.|++|+.+++|++|+..++..+.+|+||++|.|.||+.+|.+||.|+
T Consensus 462 ~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~ 541 (787)
T PRK05306 462 RPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFV 541 (787)
T ss_pred CCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECCcEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEe
Q psy1758 321 VILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIH 400 (1527)
Q Consensus 321 ~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~ 400 (1527)
++.++++|++++.+|+...++..+.+.....+++++..+.++..+.+++|||||++||+|||.++|.+|++++++++|++
T Consensus 542 ~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~~ 621 (787)
T PRK05306 542 VVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIH 621 (787)
T ss_pred EcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEEe
Confidence 99999999999999988776666655556678888877777777889999999999999999999999999999999999
Q ss_pred eccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceeeeeeEeEEEeE
Q psy1758 401 NAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480 (1527)
Q Consensus 401 ~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~ 480 (1527)
++||+||++||.+|++++|+||||||++++.++++|++.||+|++|||||+|+|+++++|+++|+|+++|+++|+|+|++
T Consensus 622 ~~vG~it~~Dv~la~~~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~~~~e~~~g~a~v~~ 701 (787)
T PRK05306 622 SGVGAITESDVTLAAASNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEIIGQAEVRE 701 (787)
T ss_pred eccCCCCHHHHHHHHhcCCEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCchhheeeeeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhhhhhhh
Q psy1758 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIENQIQRD 552 (1527)
Q Consensus 481 vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~~i~~~ 552 (1527)
+|++++.|+||||+|++|+|++|+.+||+|||++||+|+|.||||+|+||+||++|+|||+.+..|++|+..
T Consensus 702 vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~d~~~g 773 (787)
T PRK05306 702 VFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENYNDIKEG 773 (787)
T ss_pred EEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeeccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999873
No 7
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=9.7e-94 Score=894.25 Aligned_cols=550 Identities=55% Similarity=0.840 Sum_probs=500.9
Q ss_pred CCCCHHHHHHHHHhCCCccCccccCCHHHHHHHHHhcCCceeecCCCCchhhhhhhcccCcccccccCCCEEEEEecCCC
Q psy1758 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKNITAESLVRAPIVTIMGHVDH 80 (1527)
Q Consensus 1 ~~~~~~~~i~~l~~~g~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~V~IvG~~~~ 80 (1527)
|++++.+|++.|+.+|+++++||.||.+.++++|++||+........+.... .. ..+........|+|+|+++||+||
T Consensus 21 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~r~p~V~I~Ghvd~ 98 (587)
T TIGR00487 21 MNIKVSDIIKKLMLLGVMVTINQVLDKETAELVAEEFGVKVEVRVTLEETEA-EE-QDEDSGDLLVERPPVVTIMGHVDH 98 (587)
T ss_pred HCcCHHHHHHHHHHCCCEecCCcCcCHHHHHHHHHHhCCceEEeccchhhhh-hc-cccccccccccCCCEEEEECCCCC
Confidence 7899999999999999999999999999999999999987654322221111 11 112223456789999999999999
Q ss_pred ChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe-EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHH
Q psy1758 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTRE 159 (1527)
Q Consensus 81 GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e 159 (1527)
|||||+++|++..+...+.+|+|+++..+.+.+++. .++|||||||++|..++.++++.+|++++|+|++++..+|+.+
T Consensus 99 GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e 178 (587)
T TIGR00487 99 GKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIE 178 (587)
T ss_pred CHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHH
Confidence 999999999999988888899999999999988665 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCC
Q psy1758 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPV 239 (1527)
Q Consensus 160 ~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~ 239 (1527)
++..+...++|+++++||+|+.+.+.++....+...+.....|++..+++++||++|.|+++|+++|..+.+...++.++
T Consensus 179 ~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~~~~~~l~~~~ 258 (587)
T TIGR00487 179 AISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQSEVEELKANP 258 (587)
T ss_pred HHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhhhhhhccccCCC
Confidence 99999999999999999999987776666666655555566677778999999999999999999998777666667777
Q ss_pred CCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeE
Q psy1758 240 TTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEEL 319 (1527)
Q Consensus 240 ~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~ 319 (1527)
+.|+++.|++++.+++.|++++++|++|+|++||.|++|+.++|||+|+..+++.+++|.||+++.|.||+.+|.+||.|
T Consensus 259 ~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~~~kVr~l~~~~g~~v~~a~~g~~v~i~Gl~~~p~aGd~~ 338 (587)
T TIGR00487 259 NGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAAYGRVRAMIDENGKSVKEAGPSKPVEILGLSDVPAAGDEF 338 (587)
T ss_pred CCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCCccEEEEEECCCCCCCCEECCCCEEEEeCCCCCCCCCCEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 320 FVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 320 ~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
+++.++++|++++++|+.+.++..+.+.....++++...+.++..+.+++|||||++||+|||.++|+++++++++++|+
T Consensus 339 ~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~ 418 (587)
T TIGR00487 339 IVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI 418 (587)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE
Confidence 99999999999999998766555444433456777777777777889999999999999999999999999999999999
Q ss_pred eeccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceeeeeeEeEEEe
Q psy1758 400 HNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIR 479 (1527)
Q Consensus 400 ~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e~~~g~a~v~ 479 (1527)
+++||+||++||++|++++|+||||||+++++++++|++.||+|++|||||||+|+++++|+++++|+++|+++|+|+|+
T Consensus 419 ~~~vG~i~~~Dv~~a~~~~a~i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~g~a~v~ 498 (587)
T TIGR00487 419 HSGVGGITETDISLASASNAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEIIGQAEVR 498 (587)
T ss_pred EeecCCCchhhHHHHHhcCCEEEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCcceeeEeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhhhhhhh
Q psy1758 480 QVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIENQIQRD 552 (1527)
Q Consensus 480 ~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~~i~~~ 552 (1527)
++|+++|.|+||||+|++|++++|+++||+|||++||.|+|.||||+|+||+||++|+|||+.++.|++|+..
T Consensus 499 ~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~~~~~~g 571 (587)
T TIGR00487 499 QVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNYNDIKEG 571 (587)
T ss_pred EEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEeccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998874
No 8
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-93 Score=844.04 Aligned_cols=487 Identities=54% Similarity=0.860 Sum_probs=467.0
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC---CeEEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN---HGSITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~---~~~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
..|+|.|++|||++||||||++.++++++...+.+||||+++.+.+.++ ...++|+|||||+.|..||.|+++.+|+
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 3689999999999999999999999999999999999999999999985 4689999999999999999999999999
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 143 VVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
++||+|++||++|||.|.+.+++..++|+||++||+|++++++++...++.+.++.++.|++.+.++++||++|+|+++|
T Consensus 82 aILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eL 161 (509)
T COG0532 82 AILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDEL 161 (509)
T ss_pred EEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCc
Q psy1758 223 LENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSI 302 (1527)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~ 302 (1527)
++.+..+++..+++..++.++.+.++++..++|.|++++++|++|||++||.+++|..+++|+.|.+..+++++.++|+.
T Consensus 162 L~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~ 241 (509)
T COG0532 162 LELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSK 241 (509)
T ss_pred HHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhc-cccceeEeEEEEeccCCcHHH
Q psy1758 303 PVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN-KEKVKNLLIIIKTDVYGSREV 381 (1527)
Q Consensus 303 ~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiKad~~Gs~eA 381 (1527)
++.+.|++++|.+|+.+.++.+++.|++++..|....++..........+++++.++. +.+.+.+|+|+|||++||+||
T Consensus 242 ~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEA 321 (509)
T COG0532 242 PVEILGLSEVPAAGDVFIVVKDEKKARAIAELRVVLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEA 321 (509)
T ss_pred CeEEeccccccccCceEEecCChHHHhhhhhHhhhhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHH
Confidence 9999999999999999999999999999999987653333333444567777777765 556889999999999999999
Q ss_pred HHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHh
Q psy1758 382 LTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEIT 461 (1527)
Q Consensus 382 i~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~ 461 (1527)
|.++|.++..++++++|++++||+||++||.+|++++|+||||||+++++++++|++.+|+|++|||||||+|+++++|+
T Consensus 322 L~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~as~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~lied~~~~~~ 401 (509)
T COG0532 322 LKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASDAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEAAMK 401 (509)
T ss_pred HHHHHHhcCCCceEEEEEEeecCCCChhhHHHHHhcCCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceeeeeeEeEEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccc
Q psy1758 462 NLIPLEKKENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECER 541 (1527)
Q Consensus 462 ~~l~~~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr 541 (1527)
++|+|+++|.+.|.|+++++|.+++.|.||||+|++|++++|+++|++|||.+||+|+|.||||+|+||+||++|+|||+
T Consensus 402 g~l~p~~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI 481 (509)
T COG0532 402 GMLEPEKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGI 481 (509)
T ss_pred hccchhhhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhh
Q psy1758 542 LSRIENQIQRD 552 (1527)
Q Consensus 542 ~~r~~~~i~~~ 552 (1527)
.++++++++..
T Consensus 482 ~i~~~~di~~g 492 (509)
T COG0532 482 AIENYRDIKEG 492 (509)
T ss_pred EecCcccCCCC
Confidence 99999888863
No 9
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=3.9e-92 Score=886.36 Aligned_cols=548 Identities=41% Similarity=0.628 Sum_probs=491.9
Q ss_pred CCCCHHHHHHHHHhCCCccCccccCCHHHHHHHHHhcCCceeecCCCCchhhhhhh-cccCcccccccCCCEEEEEecCC
Q psy1758 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNE-YNKNITAESLVRAPIVTIMGHVD 79 (1527)
Q Consensus 1 ~~~~~~~~i~~l~~~g~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~r~~~V~IvG~~~ 79 (1527)
|++++.+||+.||++|+++++||.||.+.++.+|.+||+........+........ ..+....+...|+|+|+++||+|
T Consensus 175 ~~~~~~~ii~~l~~~g~~~~~n~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~p~V~IvGhvd 254 (742)
T CHL00189 175 LCIPETEIIKSLFLKGISVTVNQIIDISIISQVADDFGINIISEEKNNINEKTSNLDNTSAFTENSINRPPIVTILGHVD 254 (742)
T ss_pred HCcCHHHHHHHHHHcCcCccCCCccCHHHHHHHHHHcCCeEEEeccchhhhhhhcccccccchhhhcccCCEEEEECCCC
Confidence 78999999999999999999999999999999999999987654333222211111 01111334678999999999999
Q ss_pred CChhHHHHHHHccccccccCCceeEEEEEEEEEeC----CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcH
Q psy1758 80 HGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN----HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP 155 (1527)
Q Consensus 80 ~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~----~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~ 155 (1527)
||||||+++|+...+..++.+|+|+++..+.+.+. +..++|||||||+.|..++.++++.+|++|||||++++..+
T Consensus 255 vGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~ 334 (742)
T CHL00189 255 HGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKP 334 (742)
T ss_pred CCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCCh
Confidence 99999999999998888888999999888776653 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhh
Q psy1758 156 QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILEL 235 (1527)
Q Consensus 156 qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~ 235 (1527)
|+.+++..+...++|+|+|+||+|+...+..++...+......++.|++.+|++++||++|.|+++|++.|..+++...+
T Consensus 335 QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~l 414 (742)
T CHL00189 335 QTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLAEIEDL 414 (742)
T ss_pred hhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhcc
Confidence 99999999999999999999999998766666666665555555667777899999999999999999999887766666
Q ss_pred cCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCC
Q psy1758 236 KAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFS 315 (1527)
Q Consensus 236 ~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~ 315 (1527)
+..+..|+.++++++..+++.|++++++|++|+|++||.|++|+.+++|++|++.++.++.+|.||++|.|.||.+.|.+
T Consensus 415 k~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~ 494 (742)
T CHL00189 415 KADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGTSYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPAT 494 (742)
T ss_pred cCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECCcceEEEEEEcCCCcCccEEcCCCceEecCcccCCCC
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCcee
Q psy1758 316 GEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVK 395 (1527)
Q Consensus 316 G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~ 395 (1527)
||.|+++.+++.|++++..|+.+.+. .......++++...+.++..+.+++|||||++||+|||.++|.++++++|+
T Consensus 495 Gd~l~v~~~e~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~ 571 (742)
T CHL00189 495 GEHFQVFNSEKEAKLKIIKNKENNKK---DTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQ 571 (742)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHH---hhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEE
Confidence 99999999999999999877653211 111233455666666677788999999999999999999999999999999
Q ss_pred eeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceeeeeeEe
Q psy1758 396 IQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGL 475 (1527)
Q Consensus 396 i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e~~~g~ 475 (1527)
++|++++||+||++||.+|++++|+||||||+++++++++|++.||+|++|+|||+|+|+++++|+++|+|+++|+++|+
T Consensus 572 i~i~~~~vG~it~~Dv~lA~~~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid~~~~~~~~~l~~~~~~~~~g~ 651 (742)
T CHL00189 572 LNILYASLGEVTETDVEFASTTNAEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLEYIEALMEDLLDPEYKKVPIGE 651 (742)
T ss_pred EEEEEeecCCCCHHHHHHHHhcCCEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCceeeeeecee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhhhhhhh
Q psy1758 476 AEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIENQIQRD 552 (1527)
Q Consensus 476 a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~~i~~~ 552 (1527)
|+|+++|++++ |+||||+|++|++++|+++||+|+|++||+|+|.||||+|+||+||++|+|||+.+..|++|+..
T Consensus 652 a~v~~vF~~~k-~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~~d~~~g 727 (742)
T CHL00189 652 AEVKTVFPLAK-RFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEFQLWQSG 727 (742)
T ss_pred EEeeEEEecCC-CEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCCCCCCcC
Confidence 99999999998 89999999999999999999999999999999999999999999999999999999999999874
No 10
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-85 Score=747.23 Aligned_cols=486 Identities=28% Similarity=0.448 Sum_probs=434.8
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-----eEEEEEe
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----TRINIID 991 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----~~iniiD 991 (1527)
.+.+++||++||+|.|||||||.++|+..+|.+..... .++++|++++||||||||.+....+.|+. |.+||||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem-~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlID 82 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREM-RAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLID 82 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHH-HHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcC
Confidence 35678999999999999999999999999999876543 45899999999999999999999999953 8999999
Q ss_pred CCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 992 TPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 992 TPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
||||.||..||.|+|..|.|+||||||+.|+++||......|.+.++-+|.|+||+|++.|+++.+..++.+.+. +.+.
T Consensus 83 TPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iG-id~~ 161 (603)
T COG0481 83 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIG-IDAS 161 (603)
T ss_pred CCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhC-CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998763 3332
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSL 1151 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~G 1151 (1527)
+ .+.+||++|. |++++|++|++.+|+|..+++.|+++++|+.|||+|.|.+++.||+.|++++|
T Consensus 162 d------av~~SAKtG~----------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~g 225 (603)
T COG0481 162 D------AVLVSAKTGI----------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKG 225 (603)
T ss_pred h------heeEecccCC----------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCC
Confidence 2 6889999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE-Eecce---ecccCCeeeCCCCC--CCCCCCccCCCce
Q psy1758 1152 QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL-ITGIE---EICIGSTICDPSKP--NGLPMLNIDEPTL 1225 (1527)
Q Consensus 1152 d~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva-i~gl~---~~~iGdTi~~~~~~--~~l~~~~~~~P~l 1225 (1527)
|+|.++.+ | .+..|.++-.| .++..+.+++.|||++- ++|++ ++++||||+...+| +|||+++-..|
T Consensus 226 dki~~m~t--g--~~y~V~evGvf-tP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~P-- 298 (603)
T COG0481 226 DKIRMMST--G--KEYEVDEVGIF-TPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKP-- 298 (603)
T ss_pred CEEEEEec--C--CEEEEEEEeec-cCCccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcCCc--
Confidence 99999987 4 34567777655 47889999999999984 45654 68899999966555 78999985444
Q ss_pred eEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCC--CCeEEEEecchhHHHHHHHHHHhc-CcEEEEe
Q psy1758 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVS 1302 (1527)
Q Consensus 1226 ~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~--~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs 1302 (1527)
|+|.. -.|..+. +++.|+++|.|+..+|.||.+|++.+. |.||+|+++|.|||+|++|||+|| ++++..+
T Consensus 299 -~Vf~G-lyPid~~-----dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~T 371 (603)
T COG0481 299 -MVFAG-LYPVDSD-----DYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITT 371 (603)
T ss_pred -eEEEe-ecccChh-----HHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEec
Confidence 55542 2343333 479999999999999999999998554 999999999999999999999987 9999999
Q ss_pred cCeeeEEE--ecc------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEe
Q psy1758 1303 RPRVIFKT--LNG------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRI 1362 (1527)
Q Consensus 1303 ~P~V~yre--~~g------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~v 1362 (1527)
.|+|+|+- ++| .+.|||.+++|.+|+||+|.||++|+.+||.+.+|++.+..|+.|.|++
T Consensus 372 aPsV~Y~v~~~~g~~~~i~NPs~~P~~~~I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~~rv~l~Y~l 451 (603)
T COG0481 372 APSVVYKVELTDGEEIEVDNPSDLPDPNKIEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQNRVMLTYEL 451 (603)
T ss_pred CCceEEEEEEcCCcEEEecChHhCCChhhhheeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecCceEEEEEec
Confidence 99999997 344 6899999999999999999999999999999999999987899999999
Q ss_pred chhhhc-ChHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHHH--HhhcCcccccCccc
Q psy1758 1363 PSRGLI-GFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWK--LQDRGRLFINHNDL 1439 (1527)
Q Consensus 1363 P~~~l~-g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~~--~~~rG~~fv~~~~~ 1439 (1527)
|++|++ +|++.|+|.|+|||+|+|+|.+|++.+ +. +..+|+|.+..+|+|+.+|+ ++.||+.+|..-.+
T Consensus 452 Pl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~~------lV--K~dIlvNge~VDALs~ivHrd~A~~rgr~~~~KlKe 523 (603)
T COG0481 452 PLAEIVFDFFDKLKSISKGYASFDYEFIGYRESD------LV--KVDILVNGEKVDALSFIVHRDNAYERGRELVEKLKE 523 (603)
T ss_pred chHHHHHHHhHhhhccccceeeeccccccccccc------eE--EEEEEecCccccceeeeechhHHHHHHHHHHHHHHh
Confidence 999955 899999999999999999999999965 55 77999999999999999994 99999999987766
Q ss_pred ccc
Q psy1758 1440 VYE 1442 (1527)
Q Consensus 1440 vy~ 1442 (1527)
+-.
T Consensus 524 lIP 526 (603)
T COG0481 524 LIP 526 (603)
T ss_pred hcc
Confidence 543
No 11
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=2.3e-80 Score=779.64 Aligned_cols=482 Identities=27% Similarity=0.432 Sum_probs=432.5
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-----CeEEEEEeCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-----GTRINIIDTP 993 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----~~~iniiDTP 993 (1527)
.+++|||+|+||+|||||||+++|++.+|.+.+.+. ..+++|+.++|++||+|+.++...+.|+ ++.+||||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~-~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP 82 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM-KAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP 82 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc-ccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence 467999999999999999999999999998876543 5689999999999999999999999886 6899999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
||.||..++.++++.+|++|||||+++|++.||..+|..+...++|.|+|+||+|+++++++.+.+++.+.+. ..
T Consensus 83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg---~~-- 157 (600)
T PRK05433 83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIG---ID-- 157 (600)
T ss_pred CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhC---CC--
Confidence 9999999999999999999999999999999999999999889999999999999988777666666655431 11
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCE
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~ 1153 (1527)
..+++++||++|+ |+++|+++|.+.+|+|..+.++||+++||++++|+|.|++++|||++|+|++||.
T Consensus 158 --~~~vi~iSAktG~----------GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~ 225 (600)
T PRK05433 158 --ASDAVLVSAKTGI----------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDK 225 (600)
T ss_pred --cceEEEEecCCCC----------CHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCE
Confidence 1248999999998 9999999999999999988999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe-c---ceecccCCeeeCCCCC--CCCCCCccCCCceeE
Q psy1758 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTI 1227 (1527)
Q Consensus 1154 v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~iGdTi~~~~~~--~~l~~~~~~~P~l~~ 1227 (1527)
|.++++ + ...+|.+|+.+. +++.++++|.||||+++. | ++++++||||++.+++ .++|+++.++|++++
T Consensus 226 i~~~~~--~--~~~~V~~i~~~~-~~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~ 300 (600)
T PRK05433 226 IKMMST--G--KEYEVDEVGVFT-PKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPMVFA 300 (600)
T ss_pred EEEecC--C--ceEEEEEeeccC-CCceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCCCCcEEEE
Confidence 999877 3 357899998654 589999999999998774 4 4678899999998877 589999999999999
Q ss_pred EEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCC--CCCeEEEEecchhHHHHHHHHHHhc-CcEEEEecC
Q psy1758 1228 NFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKH--DDSIYEVSGRGELHLTILIENMRRE-GYELSVSRP 1304 (1527)
Q Consensus 1228 ~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~--~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P 1304 (1527)
.+.|.+. . +.++|+++|.|+.+|||||+++.+.+ .+.||+|+|||+|||+|++|||+|| |+|+.+++|
T Consensus 301 ~i~p~~~----~-----d~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~~~P 371 (600)
T PRK05433 301 GLYPVDS----D-----DYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAP 371 (600)
T ss_pred EEEECCc----c-----CHHHHHHHHHHHHHhCCeEEEEecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEEecC
Confidence 9987653 1 35899999999999999999985422 2568999999999999999999987 999999999
Q ss_pred eeeEEEe--cc------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEech
Q psy1758 1305 RVIFKTL--NG------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPS 1364 (1527)
Q Consensus 1305 ~V~yre~--~g------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~ 1364 (1527)
+|+|||+ +| .+||||++++|.+|++|+|+||++|++|||++++|++.+ +++.|+|++|+
T Consensus 372 ~V~Yreti~~g~~~~~~~p~~~pds~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~-~~~~i~~~~Pl 450 (600)
T PRK05433 372 SVVYEVTLTDGEVIEVDNPSKLPDPGKIEEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG-NRVELTYELPL 450 (600)
T ss_pred EEEEEEEEeCCcEEEEECcccCCCccccceEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC-CeEEEEEEech
Confidence 9999995 55 899999999999999999999999999999999999975 68999999999
Q ss_pred hhh-cChHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHHH--HhhcCcccccCccccc
Q psy1758 1365 RGL-IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWK--LQDRGRLFINHNDLVY 1441 (1527)
Q Consensus 1365 ~~l-~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~~--~~~rG~~fv~~~~~vy 1441 (1527)
+|| ++|+++|+|+|+|+|+|+|+|+||+|.+ +. +-.+||+.+..+|+++.+|. ++.+|+.+|..-.++-
T Consensus 451 ~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~------~~--~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~i 522 (600)
T PRK05433 451 AEIVFDFFDRLKSVSRGYASLDYEFIGYRESD------LV--KLDILINGEPVDALSFIVHRDKAYERGRALVEKLKELI 522 (600)
T ss_pred HHhhhhHHHHhHhhcCCEEEEEEEECCccccc------EE--EEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHhhC
Confidence 999 8999999999999999999999999976 55 77999999999999999994 8899999888765543
No 12
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=4.9e-80 Score=776.00 Aligned_cols=481 Identities=28% Similarity=0.441 Sum_probs=429.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--C---eEEEEEeCCCC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--G---TRINIIDTPGH 995 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~---~~iniiDTPGh 995 (1527)
++|||+|+||+|||||||+++|++.+|.+.+.. ...+++|+.++|++||+|+.++...+.|. + +.++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 589999999999999999999999998887643 34688999999999999999999999885 3 78999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+|..++.++++.||++|||+|+++|++.||..+|..+...++|.++|+||+|+++++.+++.+++.+.+. ..
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg---~~---- 153 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIG---LD---- 153 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhC---CC----
Confidence 99999999999999999999999999999999999988889999999999999987776666666655432 11
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEE
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 1155 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~ 1155 (1527)
..+++++||++|. |+++|+++|.+.+|+|..++++||+++||++++|+|.|++++|||++|+|++||.|.
T Consensus 154 ~~~vi~vSAktG~----------GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~ 223 (595)
T TIGR01393 154 ASEAILASAKTGI----------GIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIR 223 (595)
T ss_pred cceEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEE
Confidence 0148999999998 999999999999999998999999999999999999999999999999999999999
Q ss_pred EecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe-c---ceecccCCeeeCCCCC--CCCCCCccCCCceeEEE
Q psy1758 1156 IMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTINF 1229 (1527)
Q Consensus 1156 ~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~iGdTi~~~~~~--~~l~~~~~~~P~l~~~~ 1229 (1527)
++++ | ...+|.+|+.+.+ +..++++|.||||+++. | ++++.+|||||+.+++ .++|+++.++|++.+.+
T Consensus 224 ~~~~--~--~~~~v~~i~~~~~-~~~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~~i 298 (595)
T TIGR01393 224 FMST--G--KEYEVDEVGVFTP-KLTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKEVKPMVFAGL 298 (595)
T ss_pred EecC--C--CeeEEeEEEEecC-CceECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcCCCcEEEEEE
Confidence 9877 3 3578999996654 45899999999998764 4 4678899999998876 48999999999999999
Q ss_pred EecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCC--CCCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCee
Q psy1758 1230 MVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKH--DDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRV 1306 (1527)
Q Consensus 1230 ~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~--~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~V 1306 (1527)
.|.+. . ++++|.++|.||.++||||+++++.+ .+.||+|+|||+|||+|++|||+|| |+|+.+++|+|
T Consensus 299 ~p~~~----~-----d~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~~~~P~V 369 (595)
T TIGR01393 299 YPIDT----E-----DYEDLRDALEKLKLNDASLTYEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSV 369 (595)
T ss_pred EECCc----c-----cHHHHHHHHHHHhccCCeEEEEecCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeEEecCEE
Confidence 87653 1 46899999999999999999987432 2568999999999999999999987 99999999999
Q ss_pred eEEEe--cce------------------EeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhh
Q psy1758 1307 IFKTL--NGE------------------LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRG 1366 (1527)
Q Consensus 1307 ~yre~--~g~------------------llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~ 1366 (1527)
+|||+ +|+ +||||++++|.+|++|+|+||++|++|||++++|++.+++++.|+|++|++|
T Consensus 370 ~Yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~~i~~~~Plae 449 (595)
T TIGR01393 370 IYRVYLTNGEVIEVDNPSDLPDPGKIEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELIYEMPLAE 449 (595)
T ss_pred EEEEEecCCcEEEEECcccCCCcccccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCCeEEEEEEeccch
Confidence 99995 554 9999999999999999999999999999999999997656899999999999
Q ss_pred h-cChHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHH--HHhhcCcccccCccccc
Q psy1758 1367 L-IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLW--KLQDRGRLFINHNDLVY 1441 (1527)
Q Consensus 1367 l-~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~--~~~~rG~~fv~~~~~vy 1441 (1527)
+ ++|+++|+|+|+|+|+|+|+|+||+|.+ +. +..+|||.+..+|+|+.+| +++.+|+.+|..-.++-
T Consensus 450 ~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~------~~--~~~~~~n~~~~d~l~~~~~~~~~~~~~~~~~~~l~~~i 519 (595)
T TIGR01393 450 IVYDFFDKLKSISRGYASFDYELIGYRPSD------LV--KLDILINGEPVDALSFIVHRDKAYSRGREICEKLKELI 519 (595)
T ss_pred hhhchhHHhhhhcCCEEEEEEEECCccccc------eE--EEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHhhC
Confidence 6 8999999999999999999999999966 55 7799999999999999999 48899999988766543
No 13
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-79 Score=762.78 Aligned_cols=453 Identities=31% Similarity=0.507 Sum_probs=411.0
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGH 995 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh 995 (1527)
.+++|||+|+||+|||||||+++||+.+|.+.+.+.+.+ ++||+++.|++|||||.++..++.|++ ++|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 578999999999999999999999999999999877764 699999999999999999999999996 99999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh-------
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------- 1068 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l------- 1068 (1527)
.||..|++|+|+.+|+||+||||.+|+++||+.+|++|.++++|+++|+||||+..+++..+.+++++.|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877431
Q ss_pred -ccccccc------------------------------------------------------------------------
Q psy1758 1069 -CATEEQL------------------------------------------------------------------------ 1075 (1527)
Q Consensus 1069 -~~~~~~~------------------------------------------------------------------------ 1075 (1527)
+..+.-.
T Consensus 167 Ig~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~ 246 (697)
T COG0480 167 IGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKG 246 (697)
T ss_pred ccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHh
Confidence 0000000
Q ss_pred -----CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC--------------------CCCCCceeEEEeee
Q psy1758 1076 -----DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNNPLQLQIISLE 1130 (1527)
Q Consensus 1076 -----~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~p~~~~V~~~~ 1130 (1527)
-+|+++.||..+ .|+++||+++++++|+|.. +.++||.+++||+.
T Consensus 247 ~~~~~~~pvl~gsa~kn----------~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~ 316 (697)
T COG0480 247 TIAGKIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIM 316 (697)
T ss_pred hhccceeeEEeeecccC----------CcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeE
Confidence 023333333333 4899999999999999931 34799999999999
Q ss_pred ccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCC
Q psy1758 1131 YSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPS 1210 (1527)
Q Consensus 1131 ~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~ 1210 (1527)
+|++.|+++|+|||||+|++||.|++... ..++||.+|+.++|.++.+++++.||||+++.|++++.+|||+|+..
T Consensus 317 ~d~~~g~l~~~RvysGtl~~G~~v~n~~~----~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~ 392 (697)
T COG0480 317 TDPFVGKLTFVRVYSGTLKSGSEVLNSTK----GKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDEN 392 (697)
T ss_pred ecCCCCeEEEEEEeccEEcCCCEEEeCCC----CccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCC
Confidence 99999999999999999999999988654 35689999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHH
Q psy1758 1211 KPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 1290 (1527)
Q Consensus 1211 ~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e 1290 (1527)
.+..++.+.+++|++++++.|.+. . +.+||.++|.+++++||+++++.++++++ .+++|||||||+|+++
T Consensus 393 ~~v~~~~~~~pePVi~vavepk~~----~-----d~~Kl~~aL~~l~~eDPt~~v~~d~Etge-~iIsGmGELHLei~~d 462 (697)
T COG0480 393 KPVILESMEFPEPVISVAVEPKTK----A-----DQEKLSEALNKLAEEDPTFRVETDEETGE-TIISGMGELHLEIIVD 462 (697)
T ss_pred CccccccccCCCceEEEEEeECCh----h-----hHHHHHHHHHHHHhhCCceEEEEcCCccc-EEEEecchhhHHHHHH
Confidence 667889999999999999998653 1 35899999999999999999999999999 9999999999999999
Q ss_pred HHHhc-CcEEEEecCeeeEEEe--------------------------------c-------------------------
Q psy1758 1291 NMRRE-GYELSVSRPRVIFKTL--------------------------------N------------------------- 1312 (1527)
Q Consensus 1291 ~lrre-g~ev~vs~P~V~yre~--------------------------------~------------------------- 1312 (1527)
+|+|+ |+|+.+++|+|+|||+ +
T Consensus 463 rl~~~~~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ve~ 542 (697)
T COG0480 463 RLKREFGVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPAVEK 542 (697)
T ss_pred HHHhhcCceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCchhhhHHHHH
Confidence 99976 9999999999999996 0
Q ss_pred --------c----------------------------------------------eEeeeeEEEEEEecCcchHHHHHHH
Q psy1758 1313 --------G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQKL 1338 (1527)
Q Consensus 1313 --------g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l 1338 (1527)
| ++|||+++|+|.+|+||+|+||++|
T Consensus 543 G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l 622 (697)
T COG0480 543 GFREALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDL 622 (697)
T ss_pred HHHHHHhcCCCCCCceEeeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhh
Confidence 0 5999999999999999999999999
Q ss_pred hccCCeEeeeeec-CCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1339 NYRGGDLKNIEIN-EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1339 ~~rrG~~~~~~~~-~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
++|||++++|+.. ++++..+++.+|++|++||.++|||.|+|+|.|+++|+||++++
T Consensus 623 ~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp 680 (697)
T COG0480 623 NSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVP 680 (697)
T ss_pred hhcceEEeceeeccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCC
Confidence 9999999999997 45789999999999999999999999999999999999999998
No 14
>KOG0465|consensus
Probab=100.00 E-value=4.4e-78 Score=703.57 Aligned_cols=453 Identities=29% Similarity=0.483 Sum_probs=411.8
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
.+.+++|||+|++|.|+|||||.+++|+.+|.+...+.+.. ..||+++.||+|||||.+..+.+.|+++.||||||||
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPG 113 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPG 113 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCC
Confidence 34568999999999999999999999999998887766654 7999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh-------
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK------- 1067 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~------- 1067 (1527)
|.||.-||+|+|+..|++|+|+||..|+++||..+|+++.++++|.|.|+||||+.++++..+++++...+..
T Consensus 114 HvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqi 193 (721)
T KOG0465|consen 114 HVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQI 193 (721)
T ss_pred ceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876521
Q ss_pred -----------------------------------------------------hccccccc-------------------
Q psy1758 1068 -----------------------------------------------------LCATEEQL------------------- 1075 (1527)
Q Consensus 1068 -----------------------------------------------------l~~~~~~~------------------- 1075 (1527)
+...++++
T Consensus 194 Pig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aI 273 (721)
T KOG0465|consen 194 PIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAI 273 (721)
T ss_pred cccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHH
Confidence 00000000
Q ss_pred --------CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC--------------------CCC-CCceeEE
Q psy1758 1076 --------DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSN-NPLQLQI 1126 (1527)
Q Consensus 1076 --------~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~-~p~~~~V 1126 (1527)
-.||+++||+.+. |+++|||++++++|+|.. ..+ .||.++.
T Consensus 274 Rr~Ti~r~fvPVl~GSAlKNk----------GVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LA 343 (721)
T KOG0465|consen 274 RRATIKRSFVPVLCGSALKNK----------GVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALA 343 (721)
T ss_pred HHHHhhcceeeEEechhhccc----------CcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeE
Confidence 1588999999887 999999999999999941 122 3999999
Q ss_pred EeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCee
Q psy1758 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTI 1206 (1527)
Q Consensus 1127 ~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi 1206 (1527)
||+..++| |.+.|.|||+|+|++||.|++.++ | ++.|+.+|..++....++++++.|||||++.|+ ++..|||+
T Consensus 344 FKle~g~f-GqLTyvRvYqG~L~kG~~iyN~rt--g--KKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTf 417 (721)
T KOG0465|consen 344 FKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRT--G--KKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTF 417 (721)
T ss_pred EEeeecCc-cceEEEEEeeeeecCCcEEEecCC--C--ceeEhHHHhHhcccccchhhhhhccceeeeecc-ccccCcee
Confidence 99999999 999999999999999999999877 3 568999999999999999999999999999999 89999999
Q ss_pred eCC-CCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHH
Q psy1758 1207 CDP-SKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285 (1527)
Q Consensus 1207 ~~~-~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL 1285 (1527)
++. .....+..+.+|+|++++++.|++. + +.+++.++|.|...|||+++|..+.+.+| .+++|||||||
T Consensus 418 td~~~~~~~m~si~vPePVis~aikP~~k----~-----d~~~fskaL~rf~~EDPtFrv~~d~E~kq-TvIsGMGELHL 487 (721)
T KOG0465|consen 418 TDKQNLALSMESIHIPEPVISVAIKPVNK----K-----DADNFSKALNRFTKEDPTFRVSLDPEMKQ-TVISGMGELHL 487 (721)
T ss_pred ccCccccceeeeeecCCCeeEEEeccccc----c-----cHHHHHHHHHhhcccCCceEEEecccccc-chhhccchhhH
Confidence 998 5667788999999999999998663 2 34688999999999999999999999999 99999999999
Q ss_pred HHHHHHHHhc-CcEEEEecCeeeEEEe-----------------------------------------------------
Q psy1758 1286 TILIENMRRE-GYELSVSRPRVIFKTL----------------------------------------------------- 1311 (1527)
Q Consensus 1286 ~vl~e~lrre-g~ev~vs~P~V~yre~----------------------------------------------------- 1311 (1527)
+|..|||+|| |+++.+++|+|.|||+
T Consensus 488 EIy~eRl~rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~ 567 (721)
T KOG0465|consen 488 EIYVERLVREYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQ 567 (721)
T ss_pred HHHHHHHHHHhCCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchh
Confidence 9999999998 9999999999999995
Q ss_pred -------------------------------cc-----------------------------eEeeeeEEEEEEecCcch
Q psy1758 1312 -------------------------------NG-----------------------------ELYEPYENLFVDIEEINQ 1331 (1527)
Q Consensus 1312 -------------------------------~g-----------------------------~llEP~~~~~i~vp~e~~ 1331 (1527)
|| .+|||||.|+|.+|+||+
T Consensus 568 f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~Efq 647 (721)
T KOG0465|consen 568 FIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQ 647 (721)
T ss_pred HHHHHHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhh
Confidence 00 589999999999999999
Q ss_pred HHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeeccc
Q psy1758 1332 GIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYN 1396 (1527)
Q Consensus 1332 G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~ 1396 (1527)
|.|+.+|++|+|.|.+.+.. +++-.|.+++|+++|+||.++|+|+|+|.|.|+|+|++|+|+.+
T Consensus 648 G~Vi~~L~kR~a~I~~~d~~-~~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~ 711 (721)
T KOG0465|consen 648 GTVIGDLNKRKAQITGIDSS-EDYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPP 711 (721)
T ss_pred hhhhhhhhhcccEEecccCC-CceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCch
Confidence 99999999999999999874 58999999999999999999999999999999999999999983
No 15
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=1.6e-73 Score=734.80 Aligned_cols=453 Identities=29% Similarity=0.447 Sum_probs=408.7
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh 995 (1527)
+.+++|||+|+||+|||||||+++|++.+|.+.+.+.+. .+++|+.+.|++||+|+++....+.|+++++||+|||||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 467899999999999999999999999999877655554 489999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc-----
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA----- 1070 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~----- 1070 (1527)
.||..++.++++.+|++|+||||.+|+++||+.+|..+.+.++|+|+|+||+|+.++++.++++++++.+.....
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLP 165 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEec
Confidence 999999999999999999999999999999999999999999999999999999988888888888765533100
Q ss_pred -----------------------c---------------------------------c----------------------
Q psy1758 1071 -----------------------T---------------------------------E---------------------- 1072 (1527)
Q Consensus 1071 -----------------------~---------------------------------~---------------------- 1072 (1527)
. +
T Consensus 166 isa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l 245 (693)
T PRK00007 166 IGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAAL 245 (693)
T ss_pred CccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHH
Confidence 0 0
Q ss_pred -----cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC--------------------CCCCCceeEEE
Q psy1758 1073 -----EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNNPLQLQII 1127 (1527)
Q Consensus 1073 -----~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~p~~~~V~ 1127 (1527)
...-+|++++||+++. |+++||++|++++|+|.. ++++||+++||
T Consensus 246 ~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf 315 (693)
T PRK00007 246 RKATIANEIVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAF 315 (693)
T ss_pred HHHHhcCcEEEEEecccccCc----------CHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEE
Confidence 0012678888888887 999999999999999852 34679999999
Q ss_pred eeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeee
Q psy1758 1128 SLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTIC 1207 (1527)
Q Consensus 1128 ~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~ 1207 (1527)
|+.+|++.|+++|+||+||+|++||.|++..+ ...++|.+|+.+.|.++.++++|.|||||+++|++++.+||||+
T Consensus 316 K~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~----~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~ 391 (693)
T PRK00007 316 KIMTDPFVGKLTFFRVYSGVLESGSYVLNSTK----GKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLC 391 (693)
T ss_pred EeeecCCCCcEEEEEEeeeEEcCCCEEEeCCC----CceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEee
Confidence 99999999999999999999999999987644 23578999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHH
Q psy1758 1208 DPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTI 1287 (1527)
Q Consensus 1208 ~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~v 1287 (1527)
+.+.+..++++++++|++++++.|.+. . +..+|.++|.++.++||+|+|..++++++ +.++|+|||||+|
T Consensus 392 ~~~~~~~l~~~~~~~Pv~~~aIep~~~---~------d~~kL~~aL~~L~~eDpsl~v~~~~etge-~~l~g~GelHLei 461 (693)
T PRK00007 392 DEKNPIILESMEFPEPVISVAVEPKTK---A------DQEKMGIALQKLAEEDPSFRVSTDEETGQ-TIIAGMGELHLDI 461 (693)
T ss_pred CCCCccccCCCCCCCceEEEEEEECCc---c------cHHHHHHHHHHHHHhCCeEEEEEcCCCCC-EEEEEecHHhHHH
Confidence 887777788888899999999998764 1 24799999999999999999999999999 9999999999999
Q ss_pred HHHHHHhc-CcEEEEecCeeeEEEe-------c-----------------------------------------------
Q psy1758 1288 LIENMRRE-GYELSVSRPRVIFKTL-------N----------------------------------------------- 1312 (1527)
Q Consensus 1288 l~e~lrre-g~ev~vs~P~V~yre~-------~----------------------------------------------- 1312 (1527)
++++|+++ |+|+.+++|+|+|||+ .
T Consensus 462 ~~~rL~~~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~~g~~~~~~~~a 541 (693)
T PRK00007 462 IVDRMKREFKVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVIPKEYIPA 541 (693)
T ss_pred HHHHHHHHhCCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeecccCCcCcHHHHHH
Confidence 99999875 9999999999999994 0
Q ss_pred -----------c----------------------------------------------eEeeeeEEEEEEecCcchHHHH
Q psy1758 1313 -----------G----------------------------------------------ELYEPYENLFVDIEEINQGIIM 1335 (1527)
Q Consensus 1313 -----------g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~ 1335 (1527)
| .+||||++++|.+|++|+|+||
T Consensus 542 v~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~ 621 (693)
T PRK00007 542 VDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVI 621 (693)
T ss_pred HHHHHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHH
Confidence 0 5899999999999999999999
Q ss_pred HHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1336 QKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1336 ~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
++|++|||++.+|++. ++++.|++.+|++|++||.++|+++|+|+|+|++.|+||++++
T Consensus 622 ~~L~~RRg~i~~~~~~-~~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 680 (693)
T PRK00007 622 GDLNSRRGQIEGMEDR-GGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVP 680 (693)
T ss_pred HHHHhCCCeEeccccc-CCcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECC
Confidence 9999999999999875 4578999999999999999999999999999999999999997
No 16
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.2e-71 Score=695.49 Aligned_cols=451 Identities=33% Similarity=0.511 Sum_probs=383.9
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC------e------------EEEEEeCCChh
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH------G------------SITFLDTPGHE 127 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~------~------------~i~~iDTPG~e 127 (1527)
..|+|.|+++||+|||||||+++|++..+...+.+++|++++...+.+.. . .++|||||||+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 46899999999999999999999998887778888999998876554321 0 27899999999
Q ss_pred hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc-chh--------------HH-----
Q psy1758 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD-INL--------------DR----- 187 (1527)
Q Consensus 128 ~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~-~~~--------------~~----- 187 (1527)
+|..++.++++.+|++++|+|++++..+++.+++..+...++|+++|+||+|+.. +.. ..
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f 162 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQEL 162 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999889999999999999852 110 00
Q ss_pred ------HHHHHhhhccccc------ccCCCCcEEEeeccCCCChhHHHHHHHHHHH--H-HhhcCCCCCCCceEEEEEee
Q psy1758 188 ------IKQDLISEQVIPE------EYGGASPFISISAKTGVGINKLLENISLQAE--I-LELKAPVTTPAKGVIIESRL 252 (1527)
Q Consensus 188 ------~~~~l~~~~~~~~------~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~--~-~~~~~~~~~p~~~~v~~~~~ 252 (1527)
....+...+...+ ++++.++++++||++|+|+++|++.+....+ + .++..+.+.|+++.|++++.
T Consensus 163 ~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~ 242 (586)
T PRK04004 163 EEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKE 242 (586)
T ss_pred HHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEE
Confidence 1112232333322 4567789999999999999999999875432 2 24556677899999999999
Q ss_pred cCCCceEEEEEeeccEEEeccEEEecceee----eEeEeecc-----------CCceeeecCCCcceEec--CCCCCCCC
Q psy1758 253 DKGKGPVATVLIQSGTLRCSDIVVAGASYG----RIRSMLNE-----------NGKNILEAGPSIPVEIQ--GLTKVPFS 315 (1527)
Q Consensus 253 ~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~----kVr~i~~~-----------~g~~v~~a~~~~~v~I~--gl~~~~~~ 315 (1527)
+++.|++++++|.+|+|++||.|++++.++ +||+|... .++.++++.|+.++.|. ||..+ .+
T Consensus 243 ~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~-~~ 321 (586)
T PRK04004 243 ERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDA-LA 321 (586)
T ss_pred eCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCcccc-CC
Confidence 999999999999999999999999988865 99999886 45788999999999886 99988 99
Q ss_pred CCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCcee
Q psy1758 316 GEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVK 395 (1527)
Q Consensus 316 G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~ 395 (1527)
|+.|+++.++ +++++...++ ++ ++++. -..+.+++|||||++||+|||.++|.++ +
T Consensus 322 g~~~~v~~~~-~~~~~~~~~~---~~----------~~~~~-----~~~~~~~vivkad~~Gs~EAi~~~l~~~-----~ 377 (586)
T PRK04004 322 GSPLRVVRDE-DVEEVKEEVE---EE----------IEEIR-----IETDEEGVVVKADTLGSLEALVNELREE-----G 377 (586)
T ss_pred CCeEEEeCcH-HHHHHHHHHH---HH----------HHhcc-----ccccccCEEEEeCCccHHHHHHHHHHhC-----C
Confidence 9999999884 3433322111 00 11111 1246789999999999999999999986 7
Q ss_pred eeEEeeccCcCChhhHHHHHhc------CCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCccee
Q psy1758 396 IQVIHNAVGNINESDINLAIAS------KAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKK 469 (1527)
Q Consensus 396 i~iv~~~vG~it~~Dv~~A~~~------~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~ 469 (1527)
++|++++||+||++||.+|+++ +|+||||||+++++++++|+++||+|++|+|||||+|+++++|+++++|.++
T Consensus 378 i~i~~~~vG~it~~Dv~lA~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I~~~~iIY~lid~~~~~~~~~~~~~~~ 457 (586)
T PRK04004 378 IPIRKADVGDISKRDVIEASTVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKE 457 (586)
T ss_pred CCEEEeccCCCCHHHHHHHHhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhcchhh
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999988755
Q ss_pred ---eeeeEeEEEe----EEEEcCCCCeEEEEEEeeeEEeeCCeEEEee-CCeEEEEEEeceecccccccceeecCccccc
Q psy1758 470 ---ENLLGLAEIR----QVILVNKVSKIAGCYILEGLIRRDSKIRILR-NKNIIWTGELDSLKRFKDNVKEVKAGFECER 541 (1527)
Q Consensus 470 ---e~~~g~a~v~----~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R-~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr 541 (1527)
++++|+|+|+ ++|+.++ +.||||+|++|++++|++ |+| +|+. .|+|.||||+|+||+||++|+|||+
T Consensus 458 ~~~~~~~g~a~v~il~~~vf~~~~-~~IaGc~V~~G~i~~~~~--v~r~~g~~--iG~i~Slk~~k~~V~ev~~G~Ecgi 532 (586)
T PRK04004 458 KILEKIVRPAKIRILPGYVFRQSD-PAIVGVEVLGGTIKPGVP--LIKEDGKR--VGTIKQIQDQGENVKEAKAGMEVAI 532 (586)
T ss_pred hhhheeeceEEEEEccceeEecCC-CeEEEEEEEeCEEecCCE--EEEECCEE--EEEEehhhccCCcccEeCCCCEEEE
Confidence 5899999999 8999888 799999999999999995 889 8864 5999999999999999999999999
Q ss_pred cchhh
Q psy1758 542 LSRIE 546 (1527)
Q Consensus 542 ~~r~~ 546 (1527)
.+..+
T Consensus 533 ~i~~~ 537 (586)
T PRK04004 533 SIDGP 537 (586)
T ss_pred EEecc
Confidence 99877
No 17
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=1.1e-71 Score=719.25 Aligned_cols=454 Identities=29% Similarity=0.455 Sum_probs=410.0
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
++++++|||+|+||+|||||||+++|++.+|.+.+.+.+.+ +++|+.+.|++||+|+++....+.|++++++||||||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG 84 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPG 84 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCC
Confidence 45678999999999999999999999999998876655543 8999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc----
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA---- 1070 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~---- 1070 (1527)
|.+|..++.++++.+|++|+|||+.+|+..||+.+|..+...++|+++|+||+|+..++++.+++++.+.+.....
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 164 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQL 164 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEe
Confidence 9999999999999999999999999999999999999999999999999999999988888888888775432000
Q ss_pred ---------------------------------------------------------cc--------------c------
Q psy1758 1071 ---------------------------------------------------------TE--------------E------ 1073 (1527)
Q Consensus 1071 ---------------------------------------------------------~~--------------~------ 1073 (1527)
.+ +
T Consensus 165 pis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l 244 (689)
T TIGR00484 165 PIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAI 244 (689)
T ss_pred ccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence 00 0
Q ss_pred ------ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC-------------------CCCCCceeEEEe
Q psy1758 1074 ------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD-------------------NSNNPLQLQIIS 1128 (1527)
Q Consensus 1074 ------~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~-------------------~~~~p~~~~V~~ 1128 (1527)
..-+|++++||+++. |+++||++|+.++|+|.. ++++||+++|||
T Consensus 245 ~~~~~~~~~~PV~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK 314 (689)
T TIGR00484 245 RKGVLNCEFFPVLCGSAFKNK----------GVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFK 314 (689)
T ss_pred HHHHhcCCEEEEEeccccCCc----------cHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEE
Confidence 011678888888887 999999999999999852 346799999999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 1208 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~ 1208 (1527)
+.+|++.|+++++|||||+|+.||.|++... ...++|.+|+.+.|.++.++++|.|||||++.|++++.+||||++
T Consensus 315 ~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~----~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~ 390 (689)
T TIGR00484 315 VATDPFVGQLTFVRVYSGVLKSGSYVKNSRK----NKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCD 390 (689)
T ss_pred eeecCCCCeEEEEEEEEeEEcCCCEEEeCCC----CceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeC
Confidence 9999999999999999999999999997654 235789999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHH
Q psy1758 1209 PSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 1288 (1527)
Q Consensus 1209 ~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl 1288 (1527)
.+.+..++++++++|++++++.|+++. +..+|.++|.++.++||+|+|..++++|+ +.|+|+|||||+|+
T Consensus 391 ~~~~~~~~~~~~~~Pvl~~~i~p~~~~---------d~~kL~~aL~~L~~eDpsl~v~~~~etge-~il~g~GelHLei~ 460 (689)
T TIGR00484 391 PKIDVILERMEFPEPVISLAVEPKTKA---------DQEKMGIALGKLAEEDPTFRTFTDPETGQ-TIIAGMGELHLDII 460 (689)
T ss_pred CCCccccCCCCCCCceEEEEEEECCcc---------cHHHHHHHHHHHHHhCCEEEEEECCCCCC-EEEEEeeHHHHHHH
Confidence 887778888888999999999987642 35799999999999999999999999999 99999999999999
Q ss_pred HHHHHhc-CcEEEEecCeeeEEEe-------c------------------------------------------------
Q psy1758 1289 IENMRRE-GYELSVSRPRVIFKTL-------N------------------------------------------------ 1312 (1527)
Q Consensus 1289 ~e~lrre-g~ev~vs~P~V~yre~-------~------------------------------------------------ 1312 (1527)
+++|+++ |+|+.+++|+|+|||+ .
T Consensus 461 ~~~L~~~~~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~g~~~~~~i~~g~~~~~~~~av~ 540 (689)
T TIGR00484 461 VDRMKREFKVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPKGYEFVNEIKGGVIPREYIPAVD 540 (689)
T ss_pred HHHHHHHhCCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCCCCcEEEEeccCCcCCHHHHHHHH
Confidence 9999975 9999999999999994 0
Q ss_pred ---------c----------------------------------------------eEeeeeEEEEEEecCcchHHHHHH
Q psy1758 1313 ---------G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQK 1337 (1527)
Q Consensus 1313 ---------g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~ 1337 (1527)
| .+||||++++|.+|++|+|+||++
T Consensus 541 ~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~ 620 (689)
T TIGR00484 541 KGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGD 620 (689)
T ss_pred HHHHHHHhcCCcCCCceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHH
Confidence 0 389999999999999999999999
Q ss_pred HhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1338 LNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1338 l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|++|||++.+|+..+ ++.+|++.+|++|++||.++|+++|+|+|+|++.|+||++++
T Consensus 621 L~~rrg~i~~~~~~~-~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~ 677 (689)
T TIGR00484 621 LSSRRGIIEGMEARG-NVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVP 677 (689)
T ss_pred HHhcCCeEecccccC-CcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCC
Confidence 999999999998754 689999999999999999999999999999999999999997
No 18
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=8.1e-71 Score=686.24 Aligned_cols=448 Identities=32% Similarity=0.516 Sum_probs=377.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC------------------eEEEEEeCCChhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH------------------GSITFLDTPGHEA 128 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~------------------~~i~~iDTPG~e~ 128 (1527)
.|+|.|+++||+|||||||+++|++..+...+.+++|++++...+.++. ..++|||||||+.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 4889999999999999999999999988888888899988877665431 1388999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch---------------hHHHH----
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN---------------LDRIK---- 189 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~---------------~~~~~---- 189 (1527)
|..++.++++.+|++++|+|++++..+++.+++..+...++|+++|+||+|+...- ...+.
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999888899999999999996410 01111
Q ss_pred -------HHHhhhccccc------ccCCCCcEEEeeccCCCChhHHHHHHHHHHHH---HhhcCCCCCCCceEEEEEeec
Q psy1758 190 -------QDLISEQVIPE------EYGGASPFISISAKTGVGINKLLENISLQAEI---LELKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 190 -------~~l~~~~~~~~------~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~---~~~~~~~~~p~~~~v~~~~~~ 253 (1527)
.++.+.+...+ +|++.++++++||++|+|+++|+++|..+... ..++.+.+.|+++.|++++.+
T Consensus 162 ~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~ 241 (590)
T TIGR00491 162 TKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEE 241 (590)
T ss_pred HHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEc
Confidence 12233333332 46778899999999999999999999765432 345667788999999999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEeccee----eeEeEeeccCC-----------ceeeecCCC--cceEecCCCCCCCCC
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGASY----GRIRSMLNENG-----------KNILEAGPS--IPVEIQGLTKVPFSG 316 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~~~----~kVr~i~~~~g-----------~~v~~a~~~--~~v~I~gl~~~~~~G 316 (1527)
+|.|++++++|++|+|++||.|++|+.+ ++||+|++.++ ..++++.|+ .++.+.||.. +.+|
T Consensus 242 ~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~-~~aG 320 (590)
T TIGR00491 242 TGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD-VMAG 320 (590)
T ss_pred CCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC-CCCC
Confidence 9999999999999999999999999886 59999998763 456676655 4556678887 5899
Q ss_pred CeEEEeCChh--HHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCce
Q psy1758 317 EELFVILNEK--KAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKV 394 (1527)
Q Consensus 317 ~~~~~~~~e~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v 394 (1527)
+.|.++++++ ++++.+ .++ . +.. .+ +.+.+++|||||++||+|||.++|.++
T Consensus 321 ~~~~~~~~e~~~~~~~~~------~~~-----~-----~~~--~~---~~~~~~vivkad~~Gs~EAl~~~l~~~----- 374 (590)
T TIGR00491 321 SPIRVVTDEEIEKVKEEI------LKE-----V-----EEI--KI---DTDEEGVVVKADTLGSLEALVNELRDM----- 374 (590)
T ss_pred CEEEEcCcHHHHHHHHHH------HHH-----h-----hhc--cc---ccccccEEEEecCcchHHHHHHHHHhC-----
Confidence 9998887664 222111 000 0 000 01 245689999999999999999999987
Q ss_pred eeeEEeeccCcCChhhHHHHHhcC------CEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcce
Q psy1758 395 KIQVIHNAVGNINESDINLAIASK------AIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEK 468 (1527)
Q Consensus 395 ~i~iv~~~vG~it~~Dv~~A~~~~------a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~ 468 (1527)
+++|++++||+||++||.+|++++ |+||||||+++++++++|+++||+|++|||||||+|+++++|+++++|++
T Consensus 375 ~i~i~~~~vG~it~~Dv~~A~~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~ 454 (590)
T TIGR00491 375 GVPIKKADIGDVSKRDVVEAGIAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKK 454 (590)
T ss_pred CCcEEEecCCCCcHhHHHHHhhcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEEeCcHHHHHHHHHHHHHhhhcchh
Confidence 489999999999999999999986 99999999999999999999999999999999999999999999999987
Q ss_pred e---eeeeEeEEEe----EEEEcCCCCeEEEEEEeeeEEeeCCeEEEee-CCeEEEEEEeceecccccccceeecCcccc
Q psy1758 469 K---ENLLGLAEIR----QVILVNKVSKIAGCYILEGLIRRDSKIRILR-NKNIIWTGELDSLKRFKDNVKEVKAGFECE 540 (1527)
Q Consensus 469 ~---e~~~g~a~v~----~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R-~~~~i~~g~i~Slk~~k~~V~ev~~G~ecg 540 (1527)
+ +.++|+|+|+ ++|+.++ +.||||+|++|+|++|++ |+| +++++ |+|.||||+|+||+||++|+|||
T Consensus 455 ~~~~~~~~~~a~v~il~~~vf~~~~-~~i~G~~V~~G~i~~~~~--v~r~~~~~i--G~i~slk~~k~~V~ev~~G~Ecg 529 (590)
T TIGR00491 455 RKWMEAIIKPAKIRLIPKLVFRQSK-PAIVGVEVLTGVIRQGYP--LMKDDGETV--GTVRSMQDKGENVKSASAGQEVA 529 (590)
T ss_pred hhhcceeEEEEEEEEeeheeeeCCC-CeEEEEEEecCEEecCCe--EEecCCEEE--EEEchhcccCccccEECCCCEEE
Confidence 6 7899999999 8999888 799999999999999986 678 46554 99999999999999999999999
Q ss_pred ccchhh
Q psy1758 541 RLSRIE 546 (1527)
Q Consensus 541 r~~r~~ 546 (1527)
+.+..+
T Consensus 530 i~i~~~ 535 (590)
T TIGR00491 530 IAIKDV 535 (590)
T ss_pred EEEeCc
Confidence 999764
No 19
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.7e-71 Score=716.84 Aligned_cols=453 Identities=30% Similarity=0.455 Sum_probs=409.6
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh 995 (1527)
+.+++|||+|+||+|||||||+++|++.+|.+.+.+.+. .+++|+.+.|++||+|+++....+.|+++++++||||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 467899999999999999999999999988876655444 489999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhc------
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC------ 1069 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~------ 1069 (1527)
.+|..++.++++.+|++|+||||.+|++.||+.+|..+.+.++|.|+|+||||+.+++.+..++++++.+....
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iP 163 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLP 163 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 99999999999999999999999999999999999999999999999999999998888888888877653200
Q ss_pred ----------------------cc---------------------------------cc---------------------
Q psy1758 1070 ----------------------AT---------------------------------EE--------------------- 1073 (1527)
Q Consensus 1070 ----------------------~~---------------------------------~~--------------------- 1073 (1527)
.. ++
T Consensus 164 is~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l 243 (691)
T PRK12739 164 IGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAI 243 (691)
T ss_pred ccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHH
Confidence 00 00
Q ss_pred ------ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC-------------------CCCCCceeEEEe
Q psy1758 1074 ------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD-------------------NSNNPLQLQIIS 1128 (1527)
Q Consensus 1074 ------~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~-------------------~~~~p~~~~V~~ 1128 (1527)
..-+|++++||.++. |+++||++|++++|+|.. ++++||.++|||
T Consensus 244 ~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK 313 (691)
T PRK12739 244 RKATINMEFFPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFK 313 (691)
T ss_pred HHHHHcCCEEEEEeccccCCc----------cHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEE
Confidence 001588999999988 999999999999999842 457899999999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 1208 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~ 1208 (1527)
+.+|++.|+++|+|||||+|++||.|++..+ + ..++|.+|+.+.|.++.+++++.|||||+|.|++++.+||||++
T Consensus 314 ~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~ 389 (691)
T PRK12739 314 IMTDPFVGRLTFFRVYSGVLESGSYVLNTTK--G--KKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCD 389 (691)
T ss_pred eeeCCCCCeEEEEEEeeeEEcCCCEEEeCCC--C--ceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeC
Confidence 9999999999999999999999999987654 2 35789999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHH
Q psy1758 1209 PSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 1288 (1527)
Q Consensus 1209 ~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl 1288 (1527)
.+.+..++++.+++|++.+++.|.+. . +..+|.++|.++.++||+|+|++++++++ +.++|+|||||+|+
T Consensus 390 ~~~~~~l~~~~~~~Pv~~~aiep~~~----~-----d~~kL~~aL~~L~~eDpsl~v~~~~etge-~il~g~GelHLei~ 459 (691)
T PRK12739 390 EKAPIILESMEFPEPVISLAVEPKTK----A-----DQDKMGLALQKLAEEDPTFRVETDEETGQ-TIISGMGELHLDII 459 (691)
T ss_pred CCCccccCCCCCCCceEEEEEEECCc----c-----cHHHHHHHHHHHHHhCCeEEEEEcCCCCC-EEEEEecHHHHHHH
Confidence 87777788888899999999998753 1 35799999999999999999999999999 99999999999999
Q ss_pred HHHHHhc-CcEEEEecCeeeEEEe-------c------------------------------------------------
Q psy1758 1289 IENMRRE-GYELSVSRPRVIFKTL-------N------------------------------------------------ 1312 (1527)
Q Consensus 1289 ~e~lrre-g~ev~vs~P~V~yre~-------~------------------------------------------------ 1312 (1527)
+++|+++ |+|+.+++|+|+|||+ .
T Consensus 460 ~~rL~~~f~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~~~~~~~~av 539 (691)
T PRK12739 460 VDRMKREFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAV 539 (691)
T ss_pred HHHHHHHhCCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCcCcHHHHHHH
Confidence 9999865 9999999999999994 0
Q ss_pred ----------c----------------------------------------------eEeeeeEEEEEEecCcchHHHHH
Q psy1758 1313 ----------G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQ 1336 (1527)
Q Consensus 1313 ----------g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~ 1336 (1527)
| .+||||++++|.||++|+|+||+
T Consensus 540 ~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~ 619 (691)
T PRK12739 540 EKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIG 619 (691)
T ss_pred HHHHHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHH
Confidence 0 58999999999999999999999
Q ss_pred HHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1337 KLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1337 ~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+|++|||++++++..+ ++..|++.+|++|++||.++|+++|+|+|+|++.|+||++++
T Consensus 620 ~L~~RRg~i~~~~~~~-~~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 677 (691)
T PRK12739 620 DLNRRRGQIQGMEARG-GAQIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVP 677 (691)
T ss_pred HHHhcCCeEECccccC-CcEEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECC
Confidence 9999999999999864 678899999999999999999999999999999999999997
No 20
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=2e-70 Score=709.95 Aligned_cols=463 Identities=29% Similarity=0.469 Sum_probs=401.0
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe----cCeEEEEEeCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY----NGTRINIIDTP 993 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~----~~~~iniiDTP 993 (1527)
+.+++|||+|+||+|||||||+++|++.+|.+.+......++||+.+.|++||+|+.++..++.| +++++||+|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 35789999999999999999999999999988775444468899999999999999999998888 47899999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh------
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK------ 1067 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~------ 1067 (1527)
||.||..++.++++.+|++|+|||+.+|+++||+.+|+.+.+.++|+|+|+||||+..+++....+++++.|..
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~ 175 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVN 175 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876654444444433321
Q ss_pred -----hcccc-------cccCCcEEEeccccCCcCCCcc--cc------------c----------CCChhHHHHHHhhc
Q psy1758 1068 -----LCATE-------EQLDFPVIYTSALHGYANENSK--AR------------Q----------GNMIPLFEAILKYV 1111 (1527)
Q Consensus 1068 -----l~~~~-------~~~~~pvi~~SA~~g~~~~~~~--~~------------~----------~gi~~Ll~~i~~~l 1111 (1527)
+.... ...+-.++++||+.+|+..... .. . .=++.||++|++++
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~l 255 (731)
T PRK07560 176 KLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHL 255 (731)
T ss_pred HHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhC
Confidence 11110 0112357889999998432000 00 0 00127999999999
Q ss_pred CCCCC-------------------------CCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCc
Q psy1758 1112 PVHKD-------------------------NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK 1166 (1527)
Q Consensus 1112 p~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~ 1166 (1527)
|+|.. ++++||.++|||+.+|++.|+++++||+||+|++||.|++.+. ...
T Consensus 256 PsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~----~~~ 331 (731)
T PRK07560 256 PNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGA----KKK 331 (731)
T ss_pred CChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCC----CCc
Confidence 99952 4467999999999999999999999999999999999999866 235
Q ss_pred ceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCC-ccCCCceeEEEEecCCCCCCCCCcccc
Q psy1758 1167 AKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPML-NIDEPTLTINFMVNNSPLAGREGKFIT 1245 (1527)
Q Consensus 1167 ~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~-~~~~P~l~~~~~~~~~p~~g~e~~~~~ 1245 (1527)
.+|.+|+.++|.+..++++|.|||||+++|++++.+||||++.....+++++ .+++|++++++.|.+. . +
T Consensus 332 ~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~----~-----d 402 (731)
T PRK07560 332 NRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNP----K-----D 402 (731)
T ss_pred eEeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEEeCCCccccccccccCCCCeEEEEEEECCH----H-----H
Confidence 7899999999999999999999999999999999999999988777778776 4789999999998653 1 3
Q ss_pred HHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHh-cCcEEEEecCeeeEEEe-------------
Q psy1758 1246 TRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-EGYELSVSRPRVIFKTL------------- 1311 (1527)
Q Consensus 1246 ~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrr-eg~ev~vs~P~V~yre~------------- 1311 (1527)
.++|.++|.++.++||+|+|+.++++++ ++++|+|||||+|+++||++ +|+++.+++|+|+|||+
T Consensus 403 ~~kL~~aL~~L~~eDPsl~v~~~~etge-~~l~g~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~~~~~ 481 (731)
T PRK07560 403 LPKLIEVLRQLAKEDPTLVVKINEETGE-HLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVEGKSP 481 (731)
T ss_pred HHHHHHHHHHHHhhCCcEEEEEcCCCCC-eEEEcCCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccceEEECC
Confidence 5899999999999999999999999999 99999999999999999975 69999999999999986
Q ss_pred ----------------c-------------------------------------------c-------------------
Q psy1758 1312 ----------------N-------------------------------------------G------------------- 1313 (1527)
Q Consensus 1312 ----------------~-------------------------------------------g------------------- 1313 (1527)
. |
T Consensus 482 ~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~a 561 (731)
T PRK07560 482 NKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMEL 561 (731)
T ss_pred CCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHHH
Confidence 1 2
Q ss_pred ------------------------------------------------------------eEeeeeEEEEEEecCcchHH
Q psy1758 1314 ------------------------------------------------------------ELYEPYENLFVDIEEINQGI 1333 (1527)
Q Consensus 1314 ------------------------------------------------------------~llEP~~~~~i~vp~e~~G~ 1333 (1527)
.+||||++++|.+|++|+|+
T Consensus 562 v~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~ 641 (731)
T PRK07560 562 IIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGA 641 (731)
T ss_pred HHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhH
Confidence 48999999999999999999
Q ss_pred HHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1334 IMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1334 v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
||.+|++|||++++|+.. +++..|++.+|+++++||.++|+++|+|+|+|++.|+||++++
T Consensus 642 v~~~L~~rrg~i~~~~~~-~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 702 (731)
T PRK07560 642 VTREIQGRRGKILDMEQE-GDMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVP 702 (731)
T ss_pred HHHHHHhcCCeeeeeecC-CCcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCC
Confidence 999999999999999874 4678999999999999999999999999999999999999997
No 21
>PRK04642 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3.6e-72 Score=631.82 Aligned_cols=255 Identities=42% Similarity=0.675 Sum_probs=243.5
Q ss_pred cceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccC
Q psy1758 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTET 739 (1527)
Q Consensus 660 ~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt 739 (1527)
+.|||||+||||.||||||||+++||+|+.+||||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||
T Consensus 7 ~~m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~~G~aTkl~~~l~~~~K~Y~a~~~lG~~TdT 86 (300)
T PRK04642 7 RRLDGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEATKIAGLLLGSAKAYDAEIVLGVTTDT 86 (300)
T ss_pred CCcCeEEEEecCCCCCHHHHHHHHHHHhCCCcccCCCccCCcCeeeEEEEEChhhhhhHHhcCCCcEEEEEEEECccccC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCe
Q psy1758 740 GDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPY 819 (1527)
Q Consensus 740 ~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~ 819 (1527)
+|++|+|+++.++.+++.++++++|++|.|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++|+.|.
T Consensus 87 ~D~~G~v~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkrlY~lAR~G~~ve~~~R~v~I~~~~ll~~~~~~ 166 (300)
T PRK04642 87 DDADGQVLRERPVPDLSAAALQAALAPLIGRIRQRAPIYSALKQGGEPLYAKARRGEVIEAPVREVEVHAIEVLGYAAPR 166 (300)
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHCCCcEEEeCCchHeEeECCeeHHHHHhCCCccccCcEEEEEEEEEEEEEeCCE
Confidence 99999999998887889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhh--ccccCcccccccccceee
Q psy1758 820 LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYER--ISSLIPIDILLSSFGIIY 897 (1527)
Q Consensus 820 ~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~--~~~L~pie~~L~~lP~i~ 897 (1527)
+.|+|+|||||||||||+|||.+|||+|||+.||||++|+|++++|++++++.+...... .+.|+|++.++.++|.+.
T Consensus 167 ~~~~v~cskGTYIRSL~~Dig~~Lg~~a~m~~L~Rt~~G~f~~~~a~~l~~l~~~~~~~~~~~~~l~p~~~~l~~lp~v~ 246 (300)
T PRK04642 167 LRLRVTCGSGTYIRSLARDLGEVLGCGAHIAALRRLWVEPFRAPQMITLEALEAALEAGAEADTLLLPLAAGLADFPRIE 246 (300)
T ss_pred EEEEEEeCCCcCHHHHHHHHHHHhCCCEEEEEeEeeEECCcchHHCccHHHHHHhHhcccchhhcccCHHHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999999999976432211 246999999999999999
Q ss_pred ecccccceeccCccccc
Q psy1758 898 LSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 898 l~d~~~~~i~nG~~i~l 914 (1527)
++++.+..+.||+.+..
T Consensus 247 l~~~~~~~i~~G~~i~~ 263 (300)
T PRK04642 247 LDATLAARFRMGQRLRD 263 (300)
T ss_pred eCHHHHHHHHCcCccCC
Confidence 99999999999998853
No 22
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=2.2e-69 Score=700.28 Aligned_cols=455 Identities=30% Similarity=0.512 Sum_probs=411.3
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
++++++|||+|+||+|||||||+++|++.+|.+.+.+.++ .+.+|+.+.|++||+|+.++...+.|++++++||||||
T Consensus 3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG 82 (687)
T PRK13351 3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPG 82 (687)
T ss_pred CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCC
Confidence 3567899999999999999999999999988877665554 36899999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc----
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA---- 1070 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~---- 1070 (1527)
|.||..++.++++.+|++++|+|+++|+..|+..+|..+...++|+++|+||+|+.++++.++++++++.|.....
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 162 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQL 162 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876532100
Q ss_pred ----------------------------c---------------------------------------cc----------
Q psy1758 1071 ----------------------------T---------------------------------------EE---------- 1073 (1527)
Q Consensus 1071 ----------------------------~---------------------------------------~~---------- 1073 (1527)
. ..
T Consensus 163 P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~ 242 (687)
T PRK13351 163 PIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAP 242 (687)
T ss_pred ccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 0 00
Q ss_pred -------ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC------------------CCCCCceeEEEe
Q psy1758 1074 -------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD------------------NSNNPLQLQIIS 1128 (1527)
Q Consensus 1074 -------~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~------------------~~~~p~~~~V~~ 1128 (1527)
..-+|++++||++|. |++.||++|+.++|+|.. ++++|+.++|||
T Consensus 243 ~~~~~~~~~~~PV~~gSA~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK 312 (687)
T PRK13351 243 LREGTRSGHLVPVLFGSALKNI----------GIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFK 312 (687)
T ss_pred HHHHHHhCCEEEEEecccCcCc----------cHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEE
Confidence 012789999999998 999999999999999952 457899999999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 1208 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~ 1208 (1527)
+.++++.|+++++||+||+|++||+|++.++ ...++|.+|+.+.|.++.++++|.||||+++.|++++.+||||++
T Consensus 313 ~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~----~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~ 388 (687)
T PRK13351 313 VQYDPYAGKLTYLRVYSGTLRAGSQLYNGTG----GKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHD 388 (687)
T ss_pred eeecCCCceEEEEEEeEEEEcCCCEEEeCCC----CCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeC
Confidence 9999999999999999999999999999765 235789999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHH
Q psy1758 1209 PSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 1288 (1527)
Q Consensus 1209 ~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl 1288 (1527)
...+.+++++..++|++++++.|.+. . +..+|.++|.++.++||+|+|+.++++++ +.++|+|||||+|+
T Consensus 389 ~~~~~~~~~~~~~~pv~~~~Iep~~~----~-----d~~kL~~aL~~L~~eDpsl~v~~~~etge-~ii~g~GelHLei~ 458 (687)
T PRK13351 389 SADPVLLELLTFPEPVVSLAVEPERR----G-----DEQKLAEALEKLVWEDPSLRVEEDEETGQ-TILSGMGELHLEVA 458 (687)
T ss_pred CCCccccCCCCCCCccEEEEEEECCc----c-----cHHHHHHHHHHHHHhCCeEEEEECCCCCC-EEEEEecHHHHHHH
Confidence 87666777888899999999998653 1 35799999999999999999999999999 99999999999999
Q ss_pred HHHHHhc-CcEEEEecCeeeEEEe--c-----------------------------------------------------
Q psy1758 1289 IENMRRE-GYELSVSRPRVIFKTL--N----------------------------------------------------- 1312 (1527)
Q Consensus 1289 ~e~lrre-g~ev~vs~P~V~yre~--~----------------------------------------------------- 1312 (1527)
++||+++ |+|+.+++|+|+|||+ .
T Consensus 459 ~~rL~~~~~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~~~~~~~~ai 538 (687)
T PRK13351 459 LERLRREFKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAV 538 (687)
T ss_pred HHHHHHHhCCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCcCCHHHHHHH
Confidence 9999975 9999999999999995 0
Q ss_pred ----------c----------------------------------------------eEeeeeEEEEEEecCcchHHHHH
Q psy1758 1313 ----------G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQ 1336 (1527)
Q Consensus 1313 ----------g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~ 1336 (1527)
| .+||||++++|.+|++|+|+||+
T Consensus 539 ~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~ 618 (687)
T PRK13351 539 EKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLG 618 (687)
T ss_pred HHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHH
Confidence 1 58999999999999999999999
Q ss_pred HHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1337 KLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1337 ~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+|++|||++++++..+++...|++.+|++|++||.++|+++|+|+|+|+++|+||++++
T Consensus 619 ~l~~rrg~i~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~ 677 (687)
T PRK13351 619 DLSQRRGRIEGTEPRGDGEVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVP 677 (687)
T ss_pred HHHhCCcEEeceecCCCcEEEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCC
Confidence 99999999999998654555599999999999999999999999999999999999997
No 23
>PRK01851 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=7.6e-72 Score=631.34 Aligned_cols=256 Identities=53% Similarity=0.852 Sum_probs=243.4
Q ss_pred cccceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccc
Q psy1758 658 NKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITT 737 (1527)
Q Consensus 658 ~~~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~t 737 (1527)
..+.|||||+||||.||||||||+++||+|+.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|
T Consensus 11 ~~~~~~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~~~~~lG~~T 90 (303)
T PRK01851 11 PRRPVDGVLLLDKPLGLSSNDALQRAKRLLRAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDADKTYEATLRLGVRT 90 (303)
T ss_pred CCCCCCeEEEEeCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCCCceEEEEEECHHHhhhHHhcccCeEEEEEEEECCcc
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC
Q psy1758 738 ETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI 817 (1527)
Q Consensus 738 dt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~ 817 (1527)
||+|++|+|++++++. ++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++|+.
T Consensus 91 dT~D~~G~v~~~~~~~-~t~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~ 169 (303)
T PRK01851 91 STGDAEGEVLATRPVD-CDPAALEAALARFTGEIRQVPPMYSALKKDGKPLYEYARAGITVEREARDVTIHALDLLACDL 169 (303)
T ss_pred CCCCCCCCEEeecCCC-CCHHHHHHHHHhccCeeeeeCCchheEeeCCeeHHHHHhCCCccccCCcceEEEEEEEEEEeC
Confidence 9999999999998876 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceee
Q psy1758 818 PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIY 897 (1527)
Q Consensus 818 ~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~ 897 (1527)
|.++|+|+||+||||||||||||.+|||+|||+.|||+++|+|++++|++++++.+.......+.|+|++.++.++|.+.
T Consensus 170 ~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~~~~~l~p~~~~l~~lp~v~ 249 (303)
T PRK01851 170 PDVTIRVTCSKGTYIRTLAEDIGEALGCGAHLTALRRTGVGGLTLEQAVTLEALEAADEAERDALLAPVDALLSTFPRVT 249 (303)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCchHHcCCHHHHHhchhhhhhhhcCCHHHHHhhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999976432222346899999999999999
Q ss_pred ecccccceeccCccccc
Q psy1758 898 LSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 898 l~d~~~~~i~nG~~i~l 914 (1527)
++++....+.||+.+..
T Consensus 250 l~~~~~~~i~~G~~i~~ 266 (303)
T PRK01851 250 LDADAAGRFLHGQRLRL 266 (303)
T ss_pred eCHHHHHHHHCcCcccc
Confidence 99999999999999864
No 24
>PRK05033 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3.4e-71 Score=628.41 Aligned_cols=254 Identities=46% Similarity=0.789 Sum_probs=242.6
Q ss_pred cceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccC
Q psy1758 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTET 739 (1527)
Q Consensus 660 ~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt 739 (1527)
+.|||||+||||.||||||||+++|++++.+||||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||
T Consensus 7 ~~~~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~~~~~~K~Y~a~~~lG~~TdT 86 (312)
T PRK05033 7 RDINGVLLLDKPQGMSSNDALQKVKRLFNANKAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVTARLGQRTDT 86 (312)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCcCCCcCeeEEEEEECHHhhhhHHhcCCCcEEEEEEEECCcccC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCe
Q psy1758 740 GDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPY 819 (1527)
Q Consensus 740 ~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~ 819 (1527)
+|++|+|++++++ ++|.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|.|+||+|++++|+.|.
T Consensus 87 ~D~~G~v~~~~~~-~~t~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~ 165 (312)
T PRK05033 87 SDADGEVVEERPV-TLSAEQLEAALEKFRGDIEQVPSMYSALKYQGQPLYEYARQGIEVEREARPITIYELELIRFEGDE 165 (312)
T ss_pred CCCCCCEEEeecC-CCCHHHHHHHHHHCcCcEEEeCChhHeEeeCCeEHHHHHhCCcccccCceeEEEEEEEEeeEeCCE
Confidence 9999999999887 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhh---------hc-cccCccccc
Q psy1758 820 LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYE---------RI-SSLIPIDIL 889 (1527)
Q Consensus 820 ~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~---------~~-~~L~pie~~ 889 (1527)
++|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+....+ .+ ..|+|++.+
T Consensus 166 ~~~~v~cs~GTYIRsL~~Dig~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~~~~~~~~~~~l~~~llp~~~~ 245 (312)
T PRK05033 166 LELEVHCSKGTYIRTLVDDLGEKLGCGAHVIYLRRTQVAPYPLERMVTLEQLEALVEQAEQQEIPPAELLDPLLLPMDSA 245 (312)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCcccccccCHHHHHHhhhhhccccccchhhHhhhhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999997643221 12 369999999
Q ss_pred ccccceeeecccccceeccCccccc
Q psy1758 890 LSSFGIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 890 L~~lP~i~l~d~~~~~i~nG~~i~l 914 (1527)
+.++|.+.++++.+..+.||+.+..
T Consensus 246 l~~lp~v~l~~~~~~~i~~G~~i~~ 270 (312)
T PRK05033 246 VSDLPEVNLPEESAYYFKQGQPVRV 270 (312)
T ss_pred HhhCCeEEECHHHHHHHHCcCcccc
Confidence 9999999999999999999999865
No 25
>PRK00130 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3e-71 Score=627.65 Aligned_cols=250 Identities=40% Similarity=0.689 Sum_probs=241.6
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
|||||+||||.||||||||+++||+|+.+|+||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+|
T Consensus 1 m~Gil~i~KP~G~tS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D 80 (290)
T PRK00130 1 MDGILNILKPPGMTSFDVVRKIRKIAKIKKVGHTGTLDPLASGVLPVCLGKATKIVDYLMEGKKTYRAEIKLGVETDTYD 80 (290)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCeeEEEEEEChhhhhHHHhccCCcEEEEEEEECCcccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEE
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 821 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~ 821 (1527)
++|+|++++++.|++.++++++|++|+|+++|+||+|||+|+||||||+|||+|++|++++|+|+||++++++|+.|.++
T Consensus 81 ~~G~i~~~~~~~~~t~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~~~~~~ 160 (290)
T PRK00130 81 REGEILKEKEVSHLTEEEIREAILSFQGEIDQVPPMYSALKINGKKLYELARQGIEVEREARKITIYDIEILEIDLPYVI 160 (290)
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHccCeEEEECChHHeEecCCHhHHHHHHCCCccccCceEEEEEEEEEEEEeCCeEE
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeeccc
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDL 901 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~ 901 (1527)
|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+.. ....|+|++.++.++|.+.++++
T Consensus 161 ~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~---~~~~l~p~~~~l~~lp~v~l~~~ 237 (290)
T PRK00130 161 FDVKCSKGTYIRSLCFDIGEKLNCGAYMWNLIRTETGPFNIENSITLEDLNEEN---IEDYIIPIDKALKHYPKVSLDEK 237 (290)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCCHHHcCCHHHHhhhh---hhhhccCHHHHHhhCCEEEECHH
Confidence 999999999999999999999999999999999999999999999999996531 22468999999999999999999
Q ss_pred ccceeccCccccc
Q psy1758 902 LSKRFLHGQNLFL 914 (1527)
Q Consensus 902 ~~~~i~nG~~i~l 914 (1527)
.+..+.||+++..
T Consensus 238 ~~~~i~~G~~i~~ 250 (290)
T PRK00130 238 FEKLLLNGVKIKD 250 (290)
T ss_pred HHHHHHCcCcccc
Confidence 9999999999864
No 26
>PRK02755 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3.5e-71 Score=626.14 Aligned_cols=251 Identities=38% Similarity=0.626 Sum_probs=239.8
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
|||||+||||.||||||||+++||+++.+|+||+|||||+||||||+|+|+|||+++|++. +|+|+++++||.+|||+|
T Consensus 2 m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~i~vG~aTkl~~~l~~-~K~Y~a~~~lG~~TdT~D 80 (295)
T PRK02755 2 MFGFLNLDKPAGLTSHDCVARLRRLLRLKRVGHGGTLDPAATGVLPIALGKATRLLPYLPG-EKTYRGTIRFGVRTSTDD 80 (295)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHhCCCccccCCCCCCcCeeEEEEEEChhhhhHHHhCC-CcEEEEEEEECCcccCCC
Confidence 7999999999999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC---C
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI---P 818 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~---~ 818 (1527)
.+|+|++++++.+++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+++||++++++|+. |
T Consensus 81 ~~G~v~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~G~r~Y~lAR~G~~ve~~~r~v~I~~~~l~~~~~~~~~ 160 (295)
T PRK02755 81 LQGEILSSQPWPHLSLAEIETALPQFRGKIEQRPPQYSAIQVDGERLYALARRGETMELPARTVTIFRLQLLDWRPGDQP 160 (295)
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHhccCeEEEeCChhheEeeCCHhHHHHHHCCCccccCceEEEEEEEEEEEEcCCCCc
Confidence 9999999999989999999999999999999999999999999999999999999999999999999999999975 8
Q ss_pred eEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeee
Q psy1758 819 YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYL 898 (1527)
Q Consensus 819 ~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l 898 (1527)
.++|+|+|||||||||||||||.+|||+|||+.|||+++|+|++++|++++++.+..... ...|+|++.++.++|.+.+
T Consensus 161 ~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~m~~LrRt~~G~f~~~~a~~l~~l~~~~~~~-~~~llp~~~~l~~lp~v~l 239 (295)
T PRK02755 161 ELDLEIHCGAGTYIRSLARDLGAVLGTGGTLAALRRTQSLGFHLAQSLPLPELENQLQAG-TFPLLPPDLALQHLPRVQL 239 (295)
T ss_pred eEEEEEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCCHHHHHhhhhcc-cceecCHHHHHccCCEEEE
Confidence 999999999999999999999999999999999999999999999999999996542211 1258999999999999999
Q ss_pred cccccceeccCccccc
Q psy1758 899 SDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 899 ~d~~~~~i~nG~~i~l 914 (1527)
+++.+..+.||+.+..
T Consensus 240 ~~~~~~~l~~G~~i~~ 255 (295)
T PRK02755 240 SAEEAQRWCCGQRIPL 255 (295)
T ss_pred CHHHHHHHHCcCcccc
Confidence 9999999999998854
No 27
>PRK02484 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3.3e-71 Score=627.26 Aligned_cols=254 Identities=35% Similarity=0.619 Sum_probs=241.1
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
+|||||+||||.||||||||+++||+++.+||||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+
T Consensus 1 ~m~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~ 80 (294)
T PRK02484 1 MINGIINLKKEAGMTSHDAVFKLRKILQTKKIGHGGTLDPDVVGVLPIAVGKATRLIEYMTEAGKVYEGEITLGYSTTTE 80 (294)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHhCCCccccCCCCCCCCeeEEEEEEChhhhhhHHhccCCcEEEEEEEECCcccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCCC-CCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEE---Ee
Q psy1758 741 DIEGKIIDFNKNIP-NSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIID---YT 816 (1527)
Q Consensus 741 d~~g~v~~~~~~~~-~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~---~~ 816 (1527)
|++|+|++++++.+ ++.++++++|++|+|+++|+||+|||+|+||||||+|||+|++|++++|+|+||++++++ |+
T Consensus 81 D~~G~vi~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~~~~ 160 (294)
T PRK02484 81 DASGEVVAETPLTQPLTEEEVDQAMTSFTGKITQIPPMYSAVKVNGKKLYEYARAGEEVERPKRQVTIYQFERTSPLSFD 160 (294)
T ss_pred CCCCCEEEeccCCCCCCHHHHHHHHHhccCeEEEeCChhHeEeeCCHhHHHHHHCCCccccCceEEEEEEEEEecccccc
Confidence 99999999999876 899999999999999999999999999999999999999999999999999999999984 62
Q ss_pred ---CCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCccccccccc
Q psy1758 817 ---IPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSF 893 (1527)
Q Consensus 817 ---~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~l 893 (1527)
.|.++|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+....+.++.|+|++.++.++
T Consensus 161 ~~~~~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~L~Rt~~G~f~l~~a~~l~~l~~~~~~~~l~~l~p~~~~l~~l 240 (294)
T PRK02484 161 EDGLCRFSFRVACSKGTYVRTLAVDLGEKLGYAAHMSFLTRTASAGLTLEQAVTLEEIAEKVEAGELSFLQPIEYGVADL 240 (294)
T ss_pred ccCCceEEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCCHHHHHhhhhccchheecCHHHHHccC
Confidence 48999999999999999999999999999999999999999999999999999997643222234799999999999
Q ss_pred ceeeecccccceeccCccccc
Q psy1758 894 GIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 894 P~i~l~d~~~~~i~nG~~i~l 914 (1527)
|.+.++++....+.||+.+..
T Consensus 241 p~v~l~~~~~~~i~~G~~i~~ 261 (294)
T PRK02484 241 PKVDLTPEQFTEVSFGRFISL 261 (294)
T ss_pred CeEEeCHHHHHHHHCcCcccc
Confidence 999999999999999999865
No 28
>PRK01550 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1e-70 Score=625.96 Aligned_cols=253 Identities=39% Similarity=0.659 Sum_probs=240.2
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
|||||+||||+||||||||+++||+++.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||+|
T Consensus 1 m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~i~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D 80 (304)
T PRK01550 1 MNGVLLLHKPRGMTSHDCVFKLRKILRTKKVGHTGTLDPEVSGVLPICVGRATKIAEYLTDEGKTYEGEVTLGFSTTTED 80 (304)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCCCcccCCCCCCcCeeEEEEEEChhhhhhHHhcCCCcEEEEEEEECCcccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCC-CCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEE-----
Q psy1758 742 IEGKIIDFNKNIP-NSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDY----- 815 (1527)
Q Consensus 742 ~~g~v~~~~~~~~-~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~----- 815 (1527)
++|+|++++++.+ ++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||+++++++
T Consensus 81 ~~G~v~~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~Gkr~YelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~ 160 (304)
T PRK01550 81 ADGEVVETKPVDRPITREEIEAALASLTGTIEQIPPMYSAVKVNGKKLYEYARAGIEVERPVRQITIHEFVLLDSREDFE 160 (304)
T ss_pred CCCCEEeeccCCCCCCHHHHHHHHHhccceEEEeCChhHeEecCCHhHHHHHHCCCccccCCcceEEEEEEEEeeccccc
Confidence 9999999988875 8999999999999999999999999999999999999999999999999999999999974
Q ss_pred -eCCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhc-cccCccccccccc
Q psy1758 816 -TIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERI-SSLIPIDILLSSF 893 (1527)
Q Consensus 816 -~~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~-~~L~pie~~L~~l 893 (1527)
+.|.+.|+|+|||||||||||||||.+|||+|||++|||+++|+|++++|++++++.+......+ +.|+|++.++.++
T Consensus 161 ~~~~~~~~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~L~Rt~~G~f~~~~a~~le~l~~~~~~~~l~~~l~p~~~~l~~l 240 (304)
T PRK01550 161 GETQSFRFRVTCSKGTYVRTLAVMIGEKLGYPAHMSHLVRTASGGFTLEDCLTFEEIEENVQAGTVESILYPIDRALSHL 240 (304)
T ss_pred cCCceEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCCHHHcCCHHHHHhhhhccchhhhcCCHHHHHhhC
Confidence 24899999999999999999999999999999999999999999999999999999764332223 3699999999999
Q ss_pred ceeeecccccceeccCccccc
Q psy1758 894 GIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 894 P~i~l~d~~~~~i~nG~~i~l 914 (1527)
|.+.++++.+..+.||+.+..
T Consensus 241 p~v~l~~~~~~~i~~G~~i~~ 261 (304)
T PRK01550 241 PKLVIDEKQAEKVKNGAFLKN 261 (304)
T ss_pred CEEEECHHHHHHHHCcCcccc
Confidence 999999999999999998864
No 29
>PRK05389 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.2e-70 Score=624.63 Aligned_cols=255 Identities=33% Similarity=0.616 Sum_probs=241.9
Q ss_pred ccceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECcccc
Q psy1758 659 KNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTE 738 (1527)
Q Consensus 659 ~~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~td 738 (1527)
.+.|||||+||||.||||||||+++||.|+.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+||
T Consensus 9 ~~~~~Gil~i~KP~G~TS~dvv~~vrk~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~Td 88 (305)
T PRK05389 9 GRPISGWLILDKPAGMTSTEAVSKVKWLFDAQKAGHAGTLDPLASGVLPIALGEATKTVPYVMDGTKRYRFTVAWGEERD 88 (305)
T ss_pred CCCCCeEEEEeCCCCCCHHHHHHHHHHHhcccccCCcccCCCCCceEEEEEEChhhhhhHHhccCCcEEEEEEEECCccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEE-eC
Q psy1758 739 TGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDY-TI 817 (1527)
Q Consensus 739 t~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~-~~ 817 (1527)
|+|++|+|++++++ +++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++| +.
T Consensus 89 T~D~~G~v~~~~~~-~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~ 167 (305)
T PRK05389 89 TDDLEGEVTATSDV-RPTDEEIRAALPAFTGEIMQVPPQFSAIKIDGERAYDLAREGETVELPARPVEIDRLTLVERPDA 167 (305)
T ss_pred CCCCCCCEEEecCC-CCCHHHHHHHHHhccceEEEeCCchheEEECCHhHHHHHHCCCccccCceEEEEEEEEEEEecCC
Confidence 99999999998775 48999999999999999999999999999999999999999999999999999999999999 57
Q ss_pred CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhc-cccCccccccccccee
Q psy1758 818 PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERI-SSLIPIDILLSSFGII 896 (1527)
Q Consensus 818 ~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~-~~L~pie~~L~~lP~i 896 (1527)
|.++|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+....+.+ ..|+|++.++.++|.+
T Consensus 168 ~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~~~~~~l~p~~~~l~~lp~v 247 (305)
T PRK05389 168 DHAVFEVECGKGTYVRSLARDLGRALGCYGHIAALRRTRVGPFTEEDAITLEKLEALARFAALDALLLPVETALDDLPAL 247 (305)
T ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEEEeEEECCCcHHHccCHHHHHhcccccchhhhcCCHHHHHccCCEE
Confidence 999999999999999999999999999999999999999999999999999999764332222 3699999999999999
Q ss_pred eecccccceeccCccccc
Q psy1758 897 YLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 897 ~l~d~~~~~i~nG~~i~l 914 (1527)
.++++.+..+.||+.+..
T Consensus 248 ~l~~~~~~~l~~G~~i~~ 265 (305)
T PRK05389 248 ALTDEQAARLRQGNPVLL 265 (305)
T ss_pred EeCHHHHHHHHCcCcccc
Confidence 999999999999999865
No 30
>PRK01528 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.7e-70 Score=618.54 Aligned_cols=252 Identities=33% Similarity=0.479 Sum_probs=239.1
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
-||||+||||.||||||||+++||+|+.+|+||+|||||+||||||||+|+|||+++|+++.+|+|+++++||.+|||+|
T Consensus 2 ~~GiL~i~KP~G~TS~dvv~~vrk~~~~kKvGH~GTLDP~AtGvL~v~vG~aTKl~~~l~~~~K~Y~~~~~lG~~TdT~D 81 (292)
T PRK01528 2 SNYWLNIYKPRGISSAKLVSIVKKILGKVKIGHAGTLDVEAEGVLPLAVGEATKLVQLLIDAKKTYIFTVKFGKQTDSGD 81 (292)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHcCCCccCcCccCCCcCceEEEEEEChHhhhhHHHhcCCceEEEEEEECCcccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--Ce
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PY 819 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~~ 819 (1527)
++|+|++++++. ++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++|+. |.
T Consensus 82 ~~G~v~~~~~~~-~~~e~l~~~l~~f~G~i~Q~PP~ySAvKv~G~raYelAR~G~~vel~~r~v~I~~i~ll~~~~~~~~ 160 (292)
T PRK01528 82 YAGKVIATKDYI-PSKEEAYAVCSKFIGNITQIPPAFSALKVNGVRAYKLAREGKEVELKPRNITIYDLKCLNFDEKNAT 160 (292)
T ss_pred CCCCEEEecCCC-CCHHHHHHHHHhccceEEeeCChhHeEEECCHhHHHHHhCCcccccCceeEEEEEEEEEEEcCCCcE
Confidence 999999998876 599999999999999999999999999999999999999999999999999999999999986 68
Q ss_pred EEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeec
Q psy1758 820 LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLS 899 (1527)
Q Consensus 820 ~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~ 899 (1527)
+.|+|+||+||||||||||||.+|||+|||+.|||+++|+|++++|++++++.+.......+.|+|++.++.++|.+.++
T Consensus 161 ~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~l~~~llp~~~~l~~lp~i~l~ 240 (292)
T PRK01528 161 ATYYTECSKGTYIRTLAEDLALSLQSLGFVIELRRTQVGIFKEENAIRIKSSDAITKNSLEEKSIKIEAILDDILVLDAT 240 (292)
T ss_pred EEEEEEECCCccHHHHHHHHHHHHCCceEEeEEEeEEECCccHHHcCCHHHHHhhhhhhhhhccCCHHHHHhhCCeEEeC
Confidence 99999999999999999999999999999999999999999999999999997543221123699999999999999999
Q ss_pred ccccceeccCccccc
Q psy1758 900 DLLSKRFLHGQNLFL 914 (1527)
Q Consensus 900 d~~~~~i~nG~~i~l 914 (1527)
++....+.||+.+..
T Consensus 241 ~~~~~~~~~G~~i~~ 255 (292)
T PRK01528 241 DEQAQKIKYGQKCLF 255 (292)
T ss_pred HHHHHHHHCcCcccc
Confidence 999999999998854
No 31
>PRK14123 tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=2.1e-70 Score=623.76 Aligned_cols=254 Identities=37% Similarity=0.615 Sum_probs=239.2
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
+|||||+||||.||||||||+++||+|+.+|+||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+
T Consensus 1 ~m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~~~~~lG~~TdT~ 80 (305)
T PRK14123 1 MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYVMDMGKAYEATVSIGRSTTTE 80 (305)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHhCCCccccCcCCCCcCeeEEEEEEChhhhhHHHhcCCCcEEEEEEEECCcccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCC--CCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEE---E
Q psy1758 741 DIEGKIIDFNKNI--PNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIID---Y 815 (1527)
Q Consensus 741 d~~g~v~~~~~~~--~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~---~ 815 (1527)
|++|+|++++++. |++.++++++|++|+|+++|+||+|||+|+||||||+|||+|++||+++|+|+||+|++++ |
T Consensus 81 D~~G~vi~~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~~~~~~~~ 160 (305)
T PRK14123 81 DQTGDTLETKGVHSADFNKDDIDRLLEQFKGIIEQIPPMYSSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDF 160 (305)
T ss_pred CCCCCEEEeccCCcCCCCHHHHHHHHHhccCceeecCChhheEeeCCHhHHHHHhCCCcccCCceEEEEEEEEEeecccc
Confidence 9999999998874 6899999999999999999999999999999999999999999999999999999999884 6
Q ss_pred eC--CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhc-cccCcccccccc
Q psy1758 816 TI--PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERI-SSLIPIDILLSS 892 (1527)
Q Consensus 816 ~~--~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~-~~L~pie~~L~~ 892 (1527)
+. |.|+|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+....+.+ +.|+|++.++.+
T Consensus 161 ~~~~~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~l~~a~~l~~l~~~~~~~~l~~~l~p~~~~l~~ 240 (305)
T PRK14123 161 KENECHFKIRVICGKGTYIRTLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG 240 (305)
T ss_pred cCCCceEEEEEEeCCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCchHHcCCHHHHHhhhcccchhhccCCHHHHHhh
Confidence 54 799999999999999999999999999999999999999999999999999999764322223 469999999999
Q ss_pred cceeeecccc-cceeccCccccc
Q psy1758 893 FGIIYLSDLL-SKRFLHGQNLFL 914 (1527)
Q Consensus 893 lP~i~l~d~~-~~~i~nG~~i~l 914 (1527)
+|.+.++++. ...+.||+.+..
T Consensus 241 lp~v~l~~~~~~~~i~~G~~i~~ 263 (305)
T PRK14123 241 LPSIKIKDSHIKKRILNGQKFNK 263 (305)
T ss_pred CCEEEECHHHHHHHHHCcCcccc
Confidence 9999999985 689999998854
No 32
>PRK14124 tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=2e-70 Score=622.37 Aligned_cols=249 Identities=36% Similarity=0.601 Sum_probs=239.7
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
+|||||+||||+|||||||++|+||+|+.+|+||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+
T Consensus 1 ~m~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~ 80 (308)
T PRK14124 1 MKHGFLVAYKPKGPTSHDVVDEVRKKLKTRKVGHAGTLDPFATGVLIVGVNKATRLLEYLKNEKKVYYVKMRLGLITETF 80 (308)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCCccCcCcCCCCCCcEEEEEEEChHHhhhHHHhcCCceEEEEEEeCccccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeE
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 820 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~ 820 (1527)
|++|+|++++++ +++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++||+++|+|+||+|++++|+.|.+
T Consensus 81 D~~G~vi~~~~~-~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~ 159 (308)
T PRK14124 81 DITGEVVEEREC-NVTEEEIREAIFSFVGEYKQVPPAYSAKKYKGERLYKLAREGKIINLPPKEVKIYEIWDISIEGPDV 159 (308)
T ss_pred CCCCCEEEecCC-CCCHHHHHHHHHhCcCeEEEeCCchHeEEECChhHHHHHhCCCccccCceeeEEEEEEEEEEeCCeE
Confidence 999999999887 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeecc
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSD 900 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d 900 (1527)
+|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++... .....++|++.++. +|.+.+++
T Consensus 160 ~~~v~cskGTYIRsL~~DiG~~Lg~~a~m~~LrRt~~G~f~l~~a~~l~~l~~~---~~~~~llp~~~~l~-lp~v~l~~ 235 (308)
T PRK14124 160 SFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRLSVGKFSIEDSINVFEVSPE---EIENRIIPMEEILD-LPKVVIHQ 235 (308)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHccCHHHhhhh---hhhhhcCCHHHHhC-CceEEeCH
Confidence 999999999999999999999999999999999999999999999999998542 22356999999998 99999999
Q ss_pred cccceeccCccccc
Q psy1758 901 LLSKRFLHGQNLFL 914 (1527)
Q Consensus 901 ~~~~~i~nG~~i~l 914 (1527)
+....+.||+.+..
T Consensus 236 ~~~~~i~~G~~i~~ 249 (308)
T PRK14124 236 ESTEKILNGSQIYL 249 (308)
T ss_pred HHHHHHHCCCcccc
Confidence 99999999998865
No 33
>PRK14846 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=4.3e-70 Score=614.95 Aligned_cols=253 Identities=32% Similarity=0.480 Sum_probs=240.2
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
-||||+||||.||||||||+++||+++.+||||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||+|
T Consensus 2 ~nGiL~idKP~G~TS~dvv~~vrk~l~~kKVGH~GTLDP~AtGVL~i~vG~aTKl~~~l~~~~K~Y~a~~~lG~~TDT~D 81 (345)
T PRK14846 2 SNYWLNIYKPRGISSAQLVSIVKKILGKTKIGHAGTLDVEAEGILPFAVGEATKLIHLLIDARKTYIFTVKFGMQTNSGD 81 (345)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCCCcCCcCccCCCcCceEEEEEEChhhhhhHHHhcCCceEEEEEEECCccCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--Ce
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PY 819 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~~ 819 (1527)
++|+|+++.+.. ++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++|+. |.
T Consensus 82 ~eG~ii~~~~~~-~~~e~l~~~L~~f~G~i~Q~PP~ySAvKv~GkraYelARkG~~Vel~~R~V~I~~i~ll~f~~~~~~ 160 (345)
T PRK14846 82 CAGKVIATKDCI-PSQEEAYAVCSKFIGNVTQIPPAFSALKVNGVRAYKLAREGKKVELKPRNITIYDLKCLNFDEKNAT 160 (345)
T ss_pred CCCCEEEecCCC-CCHHHHHHHHHhCcceEEeeCChhheEeECChhHHHHHhCCCccccCceeEEEEEEEEEEEcCCCcE
Confidence 999999988765 689999999999999999999999999999999999999999999999999999999999976 67
Q ss_pred EEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeec
Q psy1758 820 LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLS 899 (1527)
Q Consensus 820 ~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~ 899 (1527)
+.|+|+||+||||||||||||.+|||+|||+.|||+++|+|++++|++++++.+.......+.|+|++.++.++|.+.++
T Consensus 161 ~~~~v~CSkGTYIRSLa~DIG~~Lg~~A~l~~LrRtr~G~F~l~~ai~le~L~~~~~~~l~~~llpie~~l~~lp~v~l~ 240 (345)
T PRK14846 161 ATYYTECSKGTYIRTLAEDLALSLQSLGFVIELRRTQVGIFKEENAIRIKSPDEITKNALEEKSIKIEAILDDILVLDAT 240 (345)
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCCCEEEeEEEeEEECCCcHHHcCCHHHHHhhhhcchhhccCCHHHHHhhCCeEEeC
Confidence 99999999999999999999999999999999999999999999999999997653321223699999999999999999
Q ss_pred ccccceeccCcccccc
Q psy1758 900 DLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 900 d~~~~~i~nG~~i~ls 915 (1527)
++....+.||+++..+
T Consensus 241 ~~~~~~i~nG~~i~~~ 256 (345)
T PRK14846 241 DSQAQQIKYGQKCLFN 256 (345)
T ss_pred HHHHHHHHCcCEEeec
Confidence 9999999999999876
No 34
>PRK03287 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=8e-70 Score=614.75 Aligned_cols=249 Identities=32% Similarity=0.503 Sum_probs=239.0
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
.+||||+||||.||||||||+++||+|+.+|+||+|||||+||||||+|+|+|||+++|+++.+|+|+++++||.+|||+
T Consensus 7 ~~~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~i~vG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~ 86 (298)
T PRK03287 7 TGSGLVVVDKPAGMTSHDVVARCRRLFGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLTLTDKSYTATIRLGQATTTD 86 (298)
T ss_pred CcCeEEEEeCCCCCCHHHHHHHHHHHhCCCCCCcCccCCCcceeEEEEEeChhhhhhHHHhcCCcEEEEEEEeCccccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC---
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--- 817 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--- 817 (1527)
|++|+|++++++.++|.+++++++++|+|+++|+||+|||+|+||||||+|||+|++|++++|+|+||++++++|+.
T Consensus 87 D~~G~v~~~~~~~~it~~~i~~~l~~f~G~i~Q~PP~ySAvKv~Gkr~YelAR~G~~ve~~~R~v~I~~~~l~~~~~~~~ 166 (298)
T PRK03287 87 DAEGEVLASADASAVTDEAIAAAVAALTGEIMQVPSAVSAIKVDGKRAYARVRAGEEVELPARPVTVSRFEVLAVRRDGD 166 (298)
T ss_pred CCCCCEEeecCCCCCCHHHHHHHHHhCcCeEEEeCChhHeEEECCHHHHHHHhCCCccccCcEEEEeeeeEEEEEecCCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999965
Q ss_pred -CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccc-cccccce
Q psy1758 818 -PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDI-LLSSFGI 895 (1527)
Q Consensus 818 -~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~-~L~~lP~ 895 (1527)
+.++|+|+|||||||||||||||.+|||+|||++|||+++|+|++++|++++++.+.. ..++|++. ++.++|.
T Consensus 167 ~~~~~~~v~cskGTYIRSL~~Dig~~Lg~~a~~~~LrRt~~G~f~l~~a~~l~~l~~~~-----~~l~p~~~~~l~~lp~ 241 (298)
T PRK03287 167 FIDLDVEVDCSSGTYIRALARDLGAALGVGGHLTALRRTRVGPFTLDQARTLDELAEEP-----ALSLSLDEAAARSFPR 241 (298)
T ss_pred ccEEEEEEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHccCHHHHHhhh-----hhcCCHHHHHHccCCe
Confidence 3789999999999999999999999999999999999999999999999999996532 26899987 7889999
Q ss_pred eeecccccceeccCccccc
Q psy1758 896 IYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 896 i~l~d~~~~~i~nG~~i~l 914 (1527)
+.++++....+.||+.+..
T Consensus 242 v~l~~~~~~~i~~G~~i~~ 260 (298)
T PRK03287 242 RDLTAAEAEALSHGRRLEP 260 (298)
T ss_pred EEeCHHHHHHHHCcCcccc
Confidence 9999999999999998864
No 35
>cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.
Probab=100.00 E-value=1.2e-69 Score=611.91 Aligned_cols=252 Identities=45% Similarity=0.736 Sum_probs=241.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCc
Q psy1758 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIE 743 (1527)
Q Consensus 664 G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~ 743 (1527)
|||+||||+||||||||+++||+|+.+|+||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+|++
T Consensus 1 Gil~i~KP~G~tS~~vv~~vr~~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~~~~~~G~~TdT~D~~ 80 (277)
T cd02573 1 GILLLDKPAGLTSHDVVQKVRRLLGTKKVGHTGTLDPLATGVLPIALGEATKLSQYLLDADKTYRATVRLGEATDTDDAE 80 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCcCccCCCCCCCCcCeEEEEEEEChHHhhHHHhcCCCcEEEEEEEECCcccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--CeEE
Q psy1758 744 GKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PYLT 821 (1527)
Q Consensus 744 g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~~~~ 821 (1527)
|+|++++++.+++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+++||++++++|+. |.++
T Consensus 81 G~v~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvkv~G~raYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~ 160 (277)
T cd02573 81 GEIIETSPPPRLTEEEIEAALKAFTGEIEQVPPMYSAVKVNGKRLYELARAGEEVERPPRKVTIYSLELLSFDPENPEAD 160 (277)
T ss_pred CCEEEecCCCCCCHHHHHHHHHHccCcEEeeCChhHeEeeCCccHHHHHhCCCccccCCeeEEEEEEEEEEecCCCCeEE
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeeccc
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDL 901 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~ 901 (1527)
|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+.........++|++.++.++|.+.++++
T Consensus 161 ~~v~cs~GTYIRsL~~Dig~~Lg~~a~~~~L~Rt~~G~f~~~~a~~l~~l~~~~~~~l~~~l~p~~~~l~~~p~v~l~~~ 240 (277)
T cd02573 161 FEVECSKGTYIRSLARDLGKALGCGAHLSALRRTRSGPFTLEDAITLEELEALPEEGLDELLLPIDAALSHLPKVELDEE 240 (277)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCeEEEEEEEEEECCccHHHccCHHHHHhhhhcccccccCCHHHHHhhCCEEEeCHH
Confidence 99999999999999999999999999999999999999999999999999765332222369999999999999999999
Q ss_pred ccceeccCcccccc
Q psy1758 902 LSKRFLHGQNLFLS 915 (1527)
Q Consensus 902 ~~~~i~nG~~i~ls 915 (1527)
..+.+.||+.+...
T Consensus 241 ~~~~i~~G~~i~~~ 254 (277)
T cd02573 241 EAKRLRNGQKISLP 254 (277)
T ss_pred HHHHHHCcCccccC
Confidence 99999999999653
No 36
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=1.9e-67 Score=680.19 Aligned_cols=463 Identities=31% Similarity=0.499 Sum_probs=399.5
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEE----EEecCeEEEEEeCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS----IEYNGTRINIIDTP 993 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~----~~~~~~~iniiDTP 993 (1527)
+.+.+|||+|+||+|||||||+++|++.+|.+.+......+++|+.+.|++||+|+.+...+ ++|+++++||||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 34678999999999999999999999999988775444457899999999999999987665 67789999999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhc----
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC---- 1069 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~---- 1069 (1527)
||.+|..++.++++.+|++|+|+|+.+|+..||+.+|+.+...++|+++|+||+|+..+++....+++++.|...-
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~ 174 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVN 174 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888777777777664310
Q ss_pred ----c--cc--------cccCCcEEEeccccCCcCC---------Cccc--------ccCC-------ChhHHHHHHhhc
Q psy1758 1070 ----A--TE--------EQLDFPVIYTSALHGYANE---------NSKA--------RQGN-------MIPLFEAILKYV 1111 (1527)
Q Consensus 1070 ----~--~~--------~~~~~pvi~~SA~~g~~~~---------~~~~--------~~~g-------i~~Ll~~i~~~l 1111 (1527)
. .+ ...+.++.++|++.+|+.. +.++ ...+ +++||++|++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~l 254 (720)
T TIGR00490 175 KLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHL 254 (720)
T ss_pred hhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhC
Confidence 0 00 0012234566777775320 0000 0112 467899999999
Q ss_pred CCCCC-------------------------CCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCc
Q psy1758 1112 PVHKD-------------------------NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK 1166 (1527)
Q Consensus 1112 p~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~ 1166 (1527)
|+|.. ++++||.++|||+.++++.|+++++||+||+|++||.|++.++ ...
T Consensus 255 PsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~----~~~ 330 (720)
T TIGR00490 255 PSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDR----KAK 330 (720)
T ss_pred CChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCC----CCe
Confidence 99941 3367999999999999999999999999999999999999866 245
Q ss_pred ceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCC-CCCCCC-ccCCCceeEEEEecCCCCCCCCCccc
Q psy1758 1167 AKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKP-NGLPML-NIDEPTLTINFMVNNSPLAGREGKFI 1244 (1527)
Q Consensus 1167 ~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~-~~l~~~-~~~~P~l~~~~~~~~~p~~g~e~~~~ 1244 (1527)
.+|.+|+.++|.+..++++|.|||||+++|++++.+|||||+++.+ .+++++ .+++|++++++.|.+..
T Consensus 331 ~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~--------- 401 (720)
T TIGR00490 331 ARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETICTTVENITPFESIKHISEPVVTVAIEAKNTK--------- 401 (720)
T ss_pred eEeeEEEEeccCCccCccEECCCCEEEEECccccccCceeecCCcccccCcccccCCCceEEEEEEECCHH---------
Confidence 8999999999999999999999999999999999999999987644 345655 47899999999986531
Q ss_pred cHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCeeeEEEe------------
Q psy1758 1245 TTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL------------ 1311 (1527)
Q Consensus 1245 ~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~V~yre~------------ 1311 (1527)
+..+|.++|.++.++||+|+|+.++++++ ++++|+|||||+|++++|+++ |+|+.+++|+|+|||+
T Consensus 402 d~~kL~~aL~~L~~eDPsl~v~~d~etge-~il~g~GElHLei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~ 480 (720)
T TIGR00490 402 DLPKLIEVLRQVAKEDPTVHVEINEETGE-HLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS 480 (720)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEECCCCCC-eEEEEccceeHHHHHHHHHHHhCCceeecCCEEEEEEeccccccceEEEc
Confidence 35799999999999999999999999999 999999999999999999875 9999999999999996
Q ss_pred ----------------c-----------------------------------------c---------------------
Q psy1758 1312 ----------------N-----------------------------------------G--------------------- 1313 (1527)
Q Consensus 1312 ----------------~-----------------------------------------g--------------------- 1313 (1527)
. +
T Consensus 481 ~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av 560 (720)
T TIGR00490 481 PNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELI 560 (720)
T ss_pred CCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHH
Confidence 1 1
Q ss_pred -----------------------------------------------------------eEeeeeEEEEEEecCcchHHH
Q psy1758 1314 -----------------------------------------------------------ELYEPYENLFVDIEEINQGII 1334 (1527)
Q Consensus 1314 -----------------------------------------------------------~llEP~~~~~i~vp~e~~G~v 1334 (1527)
++|||||+++|.+|++|+|+|
T Consensus 561 ~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v 640 (720)
T TIGR00490 561 LEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAA 640 (720)
T ss_pred HHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHH
Confidence 599999999999999999999
Q ss_pred HHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1335 MQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1335 ~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|.+|++|||++++|+.. ++...|++.+|++|++||.++|+++|+|.|+|+++|+||++++
T Consensus 641 ~~~L~~RRg~i~~~~~~-~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~vp 700 (720)
T TIGR00490 641 TREIQNRRGQILEMKQE-GDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVP 700 (720)
T ss_pred HHHHhhCCceeeeeccC-CCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccCC
Confidence 99999999999999864 4578999999999999999999999999999999999999997
No 37
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=4.1e-67 Score=678.42 Aligned_cols=443 Identities=29% Similarity=0.477 Sum_probs=401.9
Q ss_pred EeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHH
Q psy1758 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERI 1005 (1527)
Q Consensus 928 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~ 1005 (1527)
+||+|||||||+++|++.+|.+.+.+.++. +++|+.+.|++||+|+..+...+.|+++.++|||||||.+|..++.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999999998877655543 799999999999999999999999999999999999999999999999
Q ss_pred HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhc----------------
Q psy1758 1006 LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC---------------- 1069 (1527)
Q Consensus 1006 l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~---------------- 1069 (1527)
++.+|++++|+|++++...++..+|..+...++|.++|+||+|+..++..++++++.+.+....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 9999999999999999999999999999999999999999999998888778888877543100
Q ss_pred ------------------------------------------ccc---------------------------cccCCcEE
Q psy1758 1070 ------------------------------------------ATE---------------------------EQLDFPVI 1080 (1527)
Q Consensus 1070 ------------------------------------------~~~---------------------------~~~~~pvi 1080 (1527)
..+ ...-+|++
T Consensus 161 id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~ 240 (668)
T PRK12740 161 VDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVF 240 (668)
T ss_pred EECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 000 00137899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcCCCC-----------------CCCCCCceeEEEeeeccccCceEEEEEe
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVPVHK-----------------DNSNNPLQLQIISLEYSSYLGKIGIGRI 1143 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~-----------------~~~~~p~~~~V~~~~~d~~~G~v~~grV 1143 (1527)
++||++|. |+++||++|+.++|+|. +++++|+.++||++.++++.|+++++||
T Consensus 241 ~gSA~~~~----------Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV 310 (668)
T PRK12740 241 CGSALKNK----------GVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRV 310 (668)
T ss_pred eccccCCc----------cHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEE
Confidence 99999998 99999999999999995 2567899999999999999999999999
Q ss_pred ecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCC
Q psy1758 1144 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEP 1223 (1527)
Q Consensus 1144 ~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P 1223 (1527)
++|+|++||+|++.++ ....+|.+|+.++|.++.++++|.||||++++|++++.+||||++...+.+++++++++|
T Consensus 311 ~sG~L~~g~~v~~~~~----~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P 386 (668)
T PRK12740 311 YSGTLKKGDTLYNSGT----GKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEP 386 (668)
T ss_pred eeeEEcCCCEEEeCCC----CCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCc
Confidence 9999999999998765 235789999999999999999999999999999999999999998877778888888999
Q ss_pred ceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEe
Q psy1758 1224 TLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVS 1302 (1527)
Q Consensus 1224 ~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs 1302 (1527)
++++.+.|++. . +..+|.++|.++.++||+|+|+.++++++ +.++|+|||||+|++++|+++ |+|+.++
T Consensus 387 ~~~~~i~p~~~----~-----d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge-~~l~g~GelhLei~~~~L~~~~~~~v~~~ 456 (668)
T PRK12740 387 VISLAIEPKDK----G-----DEEKLSEALGKLAEEDPTLRVERDEETGQ-TILSGMGELHLDVALERLKREYGVEVETG 456 (668)
T ss_pred ceEEEEEECCc----c-----hHHHHHHHHHHHHHhCCeEEEEECCCCCC-EEEEEecHHHHHHHHHHHHHHhCceeEec
Confidence 99999998753 1 35899999999999999999999989999 999999999999999999976 9999999
Q ss_pred cCeeeEEEe--c---------------------------------------------------------------c----
Q psy1758 1303 RPRVIFKTL--N---------------------------------------------------------------G---- 1313 (1527)
Q Consensus 1303 ~P~V~yre~--~---------------------------------------------------------------g---- 1313 (1527)
+|+|+|||+ . |
T Consensus 457 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g 536 (668)
T PRK12740 457 PPQVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAG 536 (668)
T ss_pred CCeeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCCCCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCC
Confidence 999999994 0 2
Q ss_pred ------------------------------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeec
Q psy1758 1314 ------------------------------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEIN 1351 (1527)
Q Consensus 1314 ------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~ 1351 (1527)
.+||||++++|.+|++|+|.||++|++|||++++++..
T Consensus 537 ~p~~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~ 616 (668)
T PRK12740 537 YPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESR 616 (668)
T ss_pred CceeeEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccC
Confidence 48999999999999999999999999999999999876
Q ss_pred CCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1352 EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1352 ~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+++ ++|++.+|+++++||.++|+++|+|+|+|++.|+||+++.
T Consensus 617 ~~~-~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~ 659 (668)
T PRK12740 617 GGG-DVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEEVP 659 (668)
T ss_pred CCC-EEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEecccccCC
Confidence 544 8999999999999999999999999999999999999997
No 38
>PRK14845 translation initiation factor IF-2; Provisional
Probab=100.00 E-value=6.2e-66 Score=665.48 Aligned_cols=436 Identities=32% Similarity=0.462 Sum_probs=375.5
Q ss_pred hhHHHHHHHccccccccCCceeEEEEEEEEEeCCe------------------EEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 82 KTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG------------------SITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 82 KTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~------------------~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
||||+++|++.+++..+.+||||+++++.+.++.. .++|||||||+.|..++.++++.+|++
T Consensus 474 KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDiv 553 (1049)
T PRK14845 474 NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLA 553 (1049)
T ss_pred cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEE
Confidence 99999999999999999999999999998887531 289999999999999999999999999
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc-chh--------------HHHHHH-----------Hhhhcc
Q psy1758 144 VLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD-INL--------------DRIKQD-----------LISEQV 197 (1527)
Q Consensus 144 IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~-~~~--------------~~~~~~-----------l~~~~~ 197 (1527)
++|+|+++++.+|+.+++..+...++|+++|+||+|+.. ++. .+..++ +.+.+.
T Consensus 554 lLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~ 633 (1049)
T PRK14845 554 VLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGF 633 (1049)
T ss_pred EEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 999999999999999999999999999999999999963 220 111111 122222
Q ss_pred cc------cccCCCCcEEEeeccCCCChhHHHHHHHHHHHH---HhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccE
Q psy1758 198 IP------EEYGGASPFISISAKTGVGINKLLENISLQAEI---LELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268 (1527)
Q Consensus 198 ~~------~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~---~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~ 268 (1527)
.. ++|++.++++++||++|+||++|++.|..+++. ..++.+.+.|+++.|++++.++|.|++++++|++|+
T Consensus 634 ~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~ 713 (1049)
T PRK14845 634 DADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGT 713 (1049)
T ss_pred chhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCE
Confidence 22 356788999999999999999999998765542 235566778999999999999999999999999999
Q ss_pred EEeccEEEecce----eeeEeEeecc-----------CCceeeecCCCcceEec--CCCCCCCCCCeEEEeCChhHHHHH
Q psy1758 269 LRCSDIVVAGAS----YGRIRSMLNE-----------NGKNILEAGPSIPVEIQ--GLTKVPFSGEELFVILNEKKAREI 331 (1527)
Q Consensus 269 l~~gd~vv~g~~----~~kVr~i~~~-----------~g~~v~~a~~~~~v~I~--gl~~~~~~G~~~~~~~~e~~a~~~ 331 (1527)
|++||.|++|+. ++|||+|++. +++.++++.|+.+|.|. ||..+ .||+.|+++.+++++++.
T Consensus 714 Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~-~aG~~~~v~~~e~~~~~~ 792 (1049)
T PRK14845 714 LRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV-LAGSPIRIVPTKEKIEKA 792 (1049)
T ss_pred EecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcccc-CCCCeEEEeCCHHHHHHH
Confidence 999999999987 8999999853 24678999999999996 88887 999999999999988764
Q ss_pred HHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhH
Q psy1758 332 GLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDI 411 (1527)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv 411 (1527)
.+.... .+++.. -..+.+++|||||++||+|||.++|.++ +++|++++||+||++||
T Consensus 793 ~~~~~~-------------~~~~~~-----~~~~~~~vivKaDt~GSlEAl~~~L~~~-----~i~i~~~~vG~it~~DV 849 (1049)
T PRK14845 793 KEEVMK-------------EVEEAK-----IETDKEGILIKADTLGSLEALANELRKA-----GIPIKKAEVGDITKKDV 849 (1049)
T ss_pred HHHHHH-------------HHhhhc-----cCcceeeEEEEecccchHHHHHHHHHhC-----CCCEEEeeCCCCCHHHH
Confidence 211110 011110 1346799999999999999999999987 58999999999999999
Q ss_pred HHHHh------cCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceee---eeeEeEEEe---
Q psy1758 412 NLAIA------SKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKE---NLLGLAEIR--- 479 (1527)
Q Consensus 412 ~~A~~------~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e---~~~g~a~v~--- 479 (1527)
.+|++ ++|+||||||++++++++.|++.||+|++|||||||+|+++++|+++++|.+++ .++|+|+|+
T Consensus 850 ~~A~~~~~~~~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~~~~~~~~~~~~~~~~p~~v~ilp 929 (1049)
T PRK14845 850 IEALSYKQENPLYGVILGFNVKVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLP 929 (1049)
T ss_pred HHHHhhhccCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhchhhhhhhhcccCceEEEecc
Confidence 99999 589999999999999999999999999999999999999999999999998654 689999999
Q ss_pred -EEEEcCCCCeEEEEEEeeeEEeeCCeEEEee-CCeEEEEEEeceecccccccceeecCccccccchhh
Q psy1758 480 -QVILVNKVSKIAGCYILEGLIRRDSKIRILR-NKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIE 546 (1527)
Q Consensus 480 -~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R-~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~ 546 (1527)
++|+.++ +.||||+|++|++++|+ +|+| +|.++ |+|.||||+|++|+||++|+|||+.+..+
T Consensus 930 ~~vF~~~~-~~IaG~~V~~G~i~~~~--~l~r~~~~~i--G~i~Slk~~k~~V~ev~~G~ecgI~i~~~ 993 (1049)
T PRK14845 930 DCIFRRSN-PAIVGVEVLEGTLRVGV--TLIKEDGMKV--GTVRSIKDRGENVKEAKAGKAVAIAIEGA 993 (1049)
T ss_pred ceEEeCCC-CeEEEEEEeeCEEecCc--EEEecCCEEE--EEEchHhccCccccEeCCCCEEEEEEecc
Confidence 9999888 79999999999999997 5788 55544 99999999999999999999999999763
No 39
>PRK00020 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.7e-68 Score=583.08 Aligned_cols=215 Identities=46% Similarity=0.777 Sum_probs=209.8
Q ss_pred cceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccC
Q psy1758 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTET 739 (1527)
Q Consensus 660 ~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt 739 (1527)
+.|||||+||||.|||||||++++||.++.+||||+|||||+||||||||+|++||+++|+++.+|+|+++++||.+|||
T Consensus 7 ~~~~Gil~vdKP~G~TS~dvv~~vkr~~~~kKvGH~GTLDP~AtGvLiv~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT 86 (244)
T PRK00020 7 LALDGVLLLDKPVGLSSNHALQRAKRTVDAAKAGHTGTLDPFATGLLVCCMGRATKISGRMLEADKTYQATLQFGEETDS 86 (244)
T ss_pred CCCCeEEEEecCCCCCHHHHHHHHHHHhCCCCCCcCCcCCCcCeeEEEEEECHHhhhhHHhccCCcEEEEEEEeCCcccC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEeecCC--CCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC
Q psy1758 740 GDIEGKIIDFNKN--IPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI 817 (1527)
Q Consensus 740 ~d~~g~v~~~~~~--~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~ 817 (1527)
+|++|+|++++++ .|+|.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++||+++|+|+||++++++|+.
T Consensus 87 ~D~~G~v~~~~~~~~~~it~e~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~ 166 (244)
T PRK00020 87 GDLTGHIVARAPDGFAGVEEAALRDVLSRFVGTIEQIPPMYSALKRDGKPLYEYARAGIELDRPPRQVTIRHIELLSFSG 166 (244)
T ss_pred CCCCCcEEEeccCccCCCCHHHHHHHHHhccCeEEEeCChhheEEECCeEHHHHHhCCcccccCCeeEEEEEEEEEEEeC
Confidence 9999999999874 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhh
Q psy1758 818 PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKY 874 (1527)
Q Consensus 818 ~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~ 874 (1527)
|.++|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++..+
T Consensus 167 ~~~~~~v~cSkGTYIRSL~~DiG~~Lg~~a~l~~LrRt~~G~f~l~~a~~l~~l~~~ 223 (244)
T PRK00020 167 MQAQIDVACSKGTYIRTLAQDIGRALGCHAHLAALRRTHVGPFSLDRAVTLEALQAM 223 (244)
T ss_pred CEEEEEEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeeEECCCChHHcCCHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999654
No 40
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=3.6e-66 Score=676.55 Aligned_cols=467 Identities=26% Similarity=0.401 Sum_probs=393.1
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--------------
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-------------- 983 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-------------- 983 (1527)
+++++|||||+||+|||||||+++|++.+|.+.+......+++|+.+.|++||+|+.+...++.|.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 467899999999999999999999999999888765555678999999999999999999999984
Q ss_pred --CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC-------C---
Q psy1758 984 --GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-------N--- 1051 (1527)
Q Consensus 984 --~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~-------~--- 1051 (1527)
++.+||||||||.||.+++.++++.+|++|+||||.+|++.||+.+|+.+.+.++|+|+|+||||++ .
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~ 174 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred -CChhhhHHHHHHHHhhhccc---cc---ccCCcEEEeccccCCcC----------------------------------
Q psy1758 1052 -ARPEWVVDATFDLFDKLCAT---EE---QLDFPVIYTSALHGYAN---------------------------------- 1090 (1527)
Q Consensus 1052 -a~~~~v~~~~~~~~~~l~~~---~~---~~~~pvi~~SA~~g~~~---------------------------------- 1090 (1527)
+++..++++++..+...... .. +..--++++|+..||+.
T Consensus 175 ~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~ 254 (843)
T PLN00116 175 YQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (843)
T ss_pred HHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCC
Confidence 56777888887332222110 00 00111344444333210
Q ss_pred -----CC----------------c------------cc------cc--------------------------CCChhHHH
Q psy1758 1091 -----EN----------------S------------KA------RQ--------------------------GNMIPLFE 1105 (1527)
Q Consensus 1091 -----~~----------------~------------~~------~~--------------------------~gi~~Ll~ 1105 (1527)
.+ . ++ .. .|.+.||+
T Consensus 255 ~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld 334 (843)
T PLN00116 255 KKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLE 334 (843)
T ss_pred ceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHH
Confidence 00 0 00 00 13378999
Q ss_pred HHHhhcCCCCC-------------------------CCCCCceeEEEeeeccccCce-EEEEEeecCccccCCEEEEecC
Q psy1758 1106 AILKYVPVHKD-------------------------NSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMNG 1159 (1527)
Q Consensus 1106 ~i~~~lp~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~Gd~v~~~~~ 1159 (1527)
.+++++|+|.. ++++|+.++|||+.++++.|+ ++|+|||||+|+.||.|++++.
T Consensus 335 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~ 414 (843)
T PLN00116 335 MIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGP 414 (843)
T ss_pred HHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCC
Confidence 99999999941 235799999999999999898 9999999999999999987644
Q ss_pred CC--CCc---CcceeeeEEEeecCceeEeeeeecCCEEEEecceeccc-CCeeeCCC--CCCCCCCCccC-CCceeEEEE
Q psy1758 1160 PD--DKP---NKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI-GSTICDPS--KPNGLPMLNID-EPTLTINFM 1230 (1527)
Q Consensus 1160 ~~--g~~---~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~i-GdTi~~~~--~~~~l~~~~~~-~P~l~~~~~ 1230 (1527)
+. ++. +.++|.+|+.++|.++.++++|.|||||++.|+++..+ |||||+.. .+.+++++.++ +|++++++.
T Consensus 415 n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv~~~aIe 494 (843)
T PLN00116 415 NYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRVAVQ 494 (843)
T ss_pred CCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCCceEEEEEE
Confidence 21 111 11588999999999999999999999999999988655 99999876 56677888888 999999999
Q ss_pred ecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHH-hc--CcEEEEecCeee
Q psy1758 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMR-RE--GYELSVSRPRVI 1307 (1527)
Q Consensus 1231 ~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lr-re--g~ev~vs~P~V~ 1307 (1527)
|.+. . +.++|.++|.++.++||+|++.. +++|| ++++|||||||+|++++|+ ++ |+|+.+++|+|+
T Consensus 495 P~~~----~-----d~~kL~~aL~~L~~eDPsl~v~~-~etge-~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~ 563 (843)
T PLN00116 495 CKNA----S-----DLPKLVEGLKRLAKSDPMVQCTI-EESGE-HIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVS 563 (843)
T ss_pred ECCh----h-----hHHHHHHHHHHHHHhCCCeEEEE-cCCCC-EEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEE
Confidence 8653 1 35799999999999999999965 78999 9999999999999999998 47 999999999999
Q ss_pred EEEe-----------------------------c---------------------------------------------c
Q psy1758 1308 FKTL-----------------------------N---------------------------------------------G 1313 (1527)
Q Consensus 1308 yre~-----------------------------~---------------------------------------------g 1313 (1527)
|||+ + |
T Consensus 564 yrETI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~ 643 (843)
T PLN00116 564 FRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTG 643 (843)
T ss_pred EEecccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCC
Confidence 9985 2 0
Q ss_pred --------------------------------------------------------------------------------
Q psy1758 1314 -------------------------------------------------------------------------------- 1313 (1527)
Q Consensus 1314 -------------------------------------------------------------------------------- 1313 (1527)
T Consensus 644 ~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p 723 (843)
T PLN00116 644 PNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKP 723 (843)
T ss_pred ceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCC
Confidence
Q ss_pred eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCC-cEEEEEEEechhhhcChHHHHccccceeEEEEeEeccee
Q psy1758 1314 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEK-ERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYA 1392 (1527)
Q Consensus 1314 ~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~-~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~ 1392 (1527)
.+||||++++|.+|++|+|+||++|++|||.+++++..++ +..+|++.+|++|++||.++|+++|+|+|+|+++|+||+
T Consensus 724 ~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~ 803 (843)
T PLN00116 724 RLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWD 803 (843)
T ss_pred EEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeE
Confidence 4899999999999999999999999999999999988544 347899999999999999999999999999999999999
Q ss_pred ecc
Q psy1758 1393 PFY 1395 (1527)
Q Consensus 1393 ~~~ 1395 (1527)
+++
T Consensus 804 ~v~ 806 (843)
T PLN00116 804 MMS 806 (843)
T ss_pred ECC
Confidence 998
No 41
>PRK14122 tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=2.3e-68 Score=604.12 Aligned_cols=242 Identities=33% Similarity=0.523 Sum_probs=233.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCcc
Q psy1758 665 VLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEG 744 (1527)
Q Consensus 665 ~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~g 744 (1527)
||+||||.||||||||+++||+++.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||+|++|
T Consensus 3 il~idKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D~eG 82 (312)
T PRK14122 3 VYAVDKPLGLTSHDVVNRARRALGTRRVGHTGTLDPLATGVLVLCTDDSTKLVPFLSAEDKEYLAWVSFGATTPTLDAEG 82 (312)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcCeeeEEEEEChhhhhhHHhcCCCceEEEEEEECCcCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC-------
Q psy1758 745 KIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI------- 817 (1527)
Q Consensus 745 ~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~------- 817 (1527)
+|++++++.|++.++|+++|++|+|+++|+||+|||+|+||||||+|||+|++|++++|+|+||++++++|+.
T Consensus 83 ~i~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~vel~~R~v~I~~i~ll~~~~~~~~~~~ 162 (312)
T PRK14122 83 PISEEAPVSPLDEKDLEAALPGFLGLTEQVPPQYSAIKVGGVRAYEAARAGGALELPARPVVYHELELLAFEPSVAPIPR 162 (312)
T ss_pred CEEEecCCCCCCHHHHHHHHHhCcCeEEEeCChHHeEEECCeEHHHHHhCCCccccCCeeEEEEEEEEEEeccccccccc
Confidence 9999999989999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ---------------------------CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhH
Q psy1758 818 ---------------------------PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDT 870 (1527)
Q Consensus 818 ---------------------------~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~ 870 (1527)
|.+.|+++||+||||||||||||.+|||+|||++|||+++|+|+++||+++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~cSkGTYIRSLa~DiG~~Lg~~a~m~~LrRt~~G~f~l~~a~~l~~ 242 (312)
T PRK14122 163 PIAPSAEGWTPDPRGRPVTLPEPLGEYPTALLRLVVGSGTYVRSFARDLGAALGVPAHLSGLVRTRVGRYGLEDAVSLED 242 (312)
T ss_pred ccccccccccccccccccccccccccCceEEEEEEeCCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCCHHH
Confidence 67999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhccccCcccccccccceeeecccccceeccCccccc
Q psy1758 871 IIKYSEYERISSLIPIDILLSSFGIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 871 l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~~~~~i~nG~~i~l 914 (1527)
+.+. .++|++.++ ++|.+.++++....+.||+.+..
T Consensus 243 l~~~-------~~~p~~~~l-~lp~v~l~~~~~~~i~~G~~i~~ 278 (312)
T PRK14122 243 LAEA-------PGIPELDAL-DFPRVELSHAEARRVRQGKPPAI 278 (312)
T ss_pred Hhhh-------hcCCHHHHc-CCCeEEcCHHHHHHHHCcCcccC
Confidence 9542 368888887 89999999999999999998854
No 42
>TIGR00431 TruB tRNA pseudouridine 55 synthase. TruB, the tRNA pseudouridine 55 synthase, converts uracil to pseudouridine in the T loop (not the anticodon loop - beware mis-annotation in Swiss-Prot) of most tRNAs of all three domains of life. This model is built on a seed alignment of bacterial proteins only. Saccharomyces cerevisiae protein YNL292w (Pus4) has been shown to be the pseudouridine 55 synthase of both cytosolic and mitochondrial compartments, active at no other position on tRNA and the only enzyme active at that position in the species. A distinct yeast protein YLR175w, (centromere/microtubule-binding protein CBF5) is an rRNA pseudouridine synthase, and the archaeal set is much more similar to CBF5 than to Pus4. It is unclear whether the archaeal proteins found by this model are tRNA pseudouridine 55 synthases like TruB, rRNA pseudouridine synthases like CBF5, or (as suggested by the absence of paralogs in the Archaea) both. CBF5 likely has additional, eukaryotic-specific
Probab=100.00 E-value=6.1e-68 Score=571.40 Aligned_cols=209 Identities=51% Similarity=0.868 Sum_probs=204.9
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
|||||+||||.|||||||++++||.|+.+||||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+|
T Consensus 1 ~~G~l~v~KP~g~tS~~vv~~vkk~~~~kKvGH~GTLDP~AsGvLiv~vG~~Tkl~~~~~~~~K~Y~~~~~~G~~TdT~D 80 (209)
T TIGR00431 1 INGVLLLDKPQGMTSFDALAKVRRLLNVKKVGHTGTLDPFATGVLPILVGKATKLSPYLTDLDKEYRAEIRLGVRTDTLD 80 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCcCceEEEEEEChHhhhhHHHcCCCCeEEEEEEECCcCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEE
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 821 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~ 821 (1527)
++|+|++++++. ++.++|++++++|+|+++|+||+|||+|+||+|||+|||+|+++|+++|+++||++++++|+.|.++
T Consensus 81 ~~G~i~~~~~~~-~~~~~l~~~l~~f~G~~~Q~PP~ySA~Kv~G~raYelAR~g~~v~~~~r~v~I~~i~ll~~~~~~~~ 159 (209)
T TIGR00431 81 PDGQIVETRPVN-PTTEDVEAALPTFRGEIEQIPPMYSALKVNGKRLYEYARQGIEVERKARPVTVYDLQFLKYEGPELT 159 (209)
T ss_pred CCCCEEEecCCC-CCHHHHHHHHHHccCcEEEECChhhEEeeCCHhHHHHHHCCCccccCcceeEEEEEEEEEEcCCcEE
Confidence 999999998876 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHH
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTI 871 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l 871 (1527)
|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++
T Consensus 160 ~~v~cs~GTYIRsL~~Dig~~L~~~a~l~~L~Rt~~G~f~~~~a~~l~~l 209 (209)
T TIGR00431 160 LEVHCSKGTYIRTLARDLGEKLGCGAYVSHLRRTAVGDFPLDQSVTLEEL 209 (209)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCChhhC
Confidence 99999999999999999999999999999999999999999999999874
No 43
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=2.5e-65 Score=667.09 Aligned_cols=466 Identities=26% Similarity=0.379 Sum_probs=393.4
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----------CeEE
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----------GTRI 987 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----------~~~i 987 (1527)
+++++|||+|+||+|||||||+++|++.+|.+.+......+++|+.+.|++||+|+.++...+.|. ++.+
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i 94 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI 94 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence 357899999999999999999999999999887654444578999999999999999998888886 7889
Q ss_pred EEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC----C-------CChhh
Q psy1758 988 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS----N-------ARPEW 1056 (1527)
Q Consensus 988 niiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~----~-------a~~~~ 1056 (1527)
||+|||||.||.+++.++++.+|+||+||||.+|+++||+.+|+.+.+.++|.|+|+||||+. + +++..
T Consensus 95 ~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~ 174 (836)
T PTZ00416 95 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVK 174 (836)
T ss_pred EEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 4 67788
Q ss_pred hHHHHHHHHhhhcccc------cccCCcEEEeccccCCcC---------------------------------------C
Q psy1758 1057 VVDATFDLFDKLCATE------EQLDFPVIYTSALHGYAN---------------------------------------E 1091 (1527)
Q Consensus 1057 v~~~~~~~~~~l~~~~------~~~~~pvi~~SA~~g~~~---------------------------------------~ 1091 (1527)
++++++..+....... .+...-+.+.|+..||+- .
T Consensus 175 ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~ 254 (836)
T PTZ00416 175 TIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKD 254 (836)
T ss_pred HHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEec
Confidence 8888887665321100 011111333444422210 0
Q ss_pred -------------------------------Ccccc----c------------C---------------CChhHHHHHHh
Q psy1758 1092 -------------------------------NSKAR----Q------------G---------------NMIPLFEAILK 1109 (1527)
Q Consensus 1092 -------------------------------~~~~~----~------------~---------------gi~~Ll~~i~~ 1109 (1527)
+.+.. . . -++.||++|++
T Consensus 255 ~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~ 334 (836)
T PTZ00416 255 ETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVD 334 (836)
T ss_pred cCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHH
Confidence 00000 0 0 01678999999
Q ss_pred hcCCCCC-------------------------CCCCCceeEEEeeeccccCce-EEEEEeecCccccCCEEEEecCCCCC
Q psy1758 1110 YVPVHKD-------------------------NSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMNGPDDK 1163 (1527)
Q Consensus 1110 ~lp~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~Gd~v~~~~~~~g~ 1163 (1527)
++|+|.. ++++|+.++|||+.++++.|+ ++|+|||||+|+.||.|++.+.+...
T Consensus 335 ~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~ 414 (836)
T PTZ00416 335 HLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVP 414 (836)
T ss_pred hCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCC
Confidence 9999941 235699999999999999999 89999999999999999976552111
Q ss_pred cCcc-----eeeeEEEeecCceeEeeeeecCCEEEEeccee--cccCCeeeCCCCCCCCCCCccC-CCceeEEEEecCCC
Q psy1758 1164 PNKA-----KINQIRVFKGLDRVLVNEALSGDIVLITGIEE--ICIGSTICDPSKPNGLPMLNID-EPTLTINFMVNNSP 1235 (1527)
Q Consensus 1164 ~~~~-----kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~--~~iGdTi~~~~~~~~l~~~~~~-~P~l~~~~~~~~~p 1235 (1527)
..++ +|++|+.++|.+..++++|.|||||+|.|+++ ..+| ||++...+.+++++.++ +|++.+++.|.+.
T Consensus 415 ~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~~~Pv~~vaIep~~~- 492 (836)
T PTZ00416 415 GKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVSPVVRVAVEPKNP- 492 (836)
T ss_pred CCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccCCCCeEEEEEEECCH-
Confidence 1122 59999999999999999999999999999988 7899 99988777777777775 8999999998653
Q ss_pred CCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHh-c-CcEEEEecCeeeEEEe--
Q psy1758 1236 LAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-E-GYELSVSRPRVIFKTL-- 1311 (1527)
Q Consensus 1236 ~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrr-e-g~ev~vs~P~V~yre~-- 1311 (1527)
. +.++|.++|.++.++||+|++.. +++|| ++++|||||||++++++|++ + |+|+.+++|+|+|||+
T Consensus 493 ---~-----d~~kL~~aL~~L~~eDPsl~~~~-~etgE-~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI~ 562 (836)
T PTZ00416 493 ---K-----DLPKLVEGLKRLAKSDPLVVCTT-EESGE-HIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRETVT 562 (836)
T ss_pred ---H-----HHHHHHHHHHHHHhhCCceEEEE-cCCCC-eEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEec
Confidence 1 35799999999999999999976 78999 99999999999999999985 5 9999999999999996
Q ss_pred ---------------------------c----------------------------------------------------
Q psy1758 1312 ---------------------------N---------------------------------------------------- 1312 (1527)
Q Consensus 1312 ---------------------------~---------------------------------------------------- 1312 (1527)
+
T Consensus 563 ~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~~ 642 (836)
T PTZ00416 563 EESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVD 642 (836)
T ss_pred ccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEEe
Confidence 1
Q ss_pred ---c----------------------------------------------------------------------eEeeee
Q psy1758 1313 ---G----------------------------------------------------------------------ELYEPY 1319 (1527)
Q Consensus 1313 ---g----------------------------------------------------------------------~llEP~ 1319 (1527)
+ .+||||
T Consensus 643 ~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi 722 (836)
T PTZ00416 643 VTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEPM 722 (836)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEEeee
Confidence 1 489999
Q ss_pred EEEEEEecCcchHHHHHHHhccCCeEeeeeecCCc-EEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1320 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKE-RVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1320 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~-~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+.++|.+|++|+|+||++|++|||+++++++.+++ ..+|++.+|++|++||.++|+++|+|+|+|++.|+||++++
T Consensus 723 ~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~vp 799 (836)
T PTZ00416 723 FLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQVVP 799 (836)
T ss_pred EEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEEECC
Confidence 99999999999999999999999999999886444 48999999999999999999999999999999999999998
No 44
>PRK00989 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=3.4e-67 Score=569.29 Aligned_cols=212 Identities=39% Similarity=0.722 Sum_probs=206.9
Q ss_pred cceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecc-cccccccccCCCcEEEEEEEECcccc
Q psy1758 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE-ATKFSNYLSEADKYYEAIIHLGITTE 738 (1527)
Q Consensus 660 ~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~-~tk~~~~~~~~~K~Y~~~~~~G~~td 738 (1527)
..+||||+||||.|||||||++|+||+++.+||||+|||||+||||||||+|+ +||+++|+++.+|+|+++++||.+||
T Consensus 6 ~~~~G~l~i~KP~g~TS~dvv~~ikk~~~~kKvGH~GTLDP~AtGvLiv~vG~~aTkl~~~~~~~~K~Y~~~~~~G~~Td 85 (230)
T PRK00989 6 ESKEGILLVDKPQGRTSFSLIRSLTKLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDILLFEDKEYAAVAHLGTTTD 85 (230)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcCCcCccCCCCCeeEEEEEECCchhhhHHHhcCCCcEEEEEEEECCccc
Confidence 37899999999999999999999999999999999999999999999999999 79999999999999999999999999
Q ss_pred CCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCC
Q psy1758 739 TGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP 818 (1527)
Q Consensus 739 t~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~ 818 (1527)
|+|.+|+|+++.+ .+++.++++++|++|+|.++|+||+|||+|+||+|||+|||+|++||+++|.|+|| +++++|+.|
T Consensus 86 T~D~~G~vi~~~~-~~~~~~~i~~~l~~f~G~~~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~i~-~~ll~~~~p 163 (230)
T PRK00989 86 SYDCDGKIVGRSK-KIPTLEEVLSAASYFQGEIQQVPPMFSAKKVQGKKLYEYARQGLSIERRPSTVQVH-LQLTKYEYP 163 (230)
T ss_pred CCCCCCcEEEecC-CCCCHHHHHHHHHhCcceEEeeCChhHeEEECCHhHHHHHhCCCccccCcEEEEEE-EEEEEeeCC
Confidence 9999999999987 46899999999999999999999999999999999999999999999999999999 999999999
Q ss_pred eEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHh
Q psy1758 819 YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIK 873 (1527)
Q Consensus 819 ~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~ 873 (1527)
.++|+|+||+||||||||||||.+|||+|||+.|||+++|+|++++|++++++..
T Consensus 164 ~~~~~v~cs~GTYIRSL~~DiG~~Lg~~a~~~~LrRt~~G~f~l~~a~~l~~l~~ 218 (230)
T PRK00989 164 LLHFVVQCSKGTYIRSIAHELGNMLGCGAYLEELRRLRSGSFSIDQCIDGNLLDE 218 (230)
T ss_pred eEEEEEEEcCCCcHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCCHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999854
No 45
>PRK04099 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=4.2e-67 Score=583.47 Aligned_cols=235 Identities=34% Similarity=0.568 Sum_probs=225.1
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
|||||++|||+|||||+||+|+||.++.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||+|
T Consensus 1 mngil~vdKP~g~tS~~vv~~ikk~~~~kKvGH~GTLDP~AtGvLiv~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D 80 (273)
T PRK04099 1 MNRLFVANKPAGMSSNAFLSRLKRKYGVKKAGFSGTLDPFAKGVLIVAFGQYTKLFRFLKKTPKTYRATLWLGASSPSLD 80 (273)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCCCccccCccCCCCCeeEEEEEEChHhhhHHHhccCCceEEEEEEECCcccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEE
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 821 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~ 821 (1527)
.+| |++.+++.+++.++|+++|++|+|+++|+||+|||+|+||||||+|||+|++|++++|+++||++++++|+.|.++
T Consensus 81 ~e~-i~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~~~ll~~~~p~~~ 159 (273)
T PRK04099 81 IEN-IESIQIIKPFDKDLIEKILKSLQGEISYTPPKFSAKKINGKRAYELARKGEEFELKPITMEIFDCKLLSYNHPFLT 159 (273)
T ss_pred Ccc-eEEeccCCCCCHHHHHHHHHhCcceEEEeCChhhEEeeCCHhHHHHHhCCcccccCceeEEEEEEEEEEEeCCEEE
Confidence 998 8888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeeccc
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDL 901 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~ 901 (1527)
|+|+||+||||||||+|||.+|||+|||++|||+++|+|+++++.. |.|++. + ++|.+.+.+
T Consensus 160 f~v~cs~GTYIRSL~~Dig~~Lg~~a~m~~LrRt~~G~f~~~~~~~---------------l~pl~~-l-~l~~~~~~~- 221 (273)
T PRK04099 160 FEITVSEGAYIRSLGELIAKKLGVNGTLSSLERLSEGKFVYENEKA---------------LNPLEY-L-NLPQNFYLG- 221 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHCee---------------cCChhh-c-ccceEechh-
Confidence 9999999999999999999999999999999999999998877542 667766 3 899999998
Q ss_pred ccceeccCcccccc
Q psy1758 902 LSKRFLHGQNLFLS 915 (1527)
Q Consensus 902 ~~~~i~nG~~i~ls 915 (1527)
....+.+|+++.+.
T Consensus 222 ~~~~i~~G~ki~~~ 235 (273)
T PRK04099 222 DKNNLELGKKLFVE 235 (273)
T ss_pred HHHHHhCCCeeccC
Confidence 88999999998764
No 46
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker
Probab=100.00 E-value=1.4e-66 Score=564.22 Aligned_cols=208 Identities=38% Similarity=0.609 Sum_probs=204.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCc
Q psy1758 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIE 743 (1527)
Q Consensus 664 G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~ 743 (1527)
|||+||||.|||||||++++|+.|+.+||||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+|++
T Consensus 1 Gil~i~KP~g~tS~~vv~~ik~~~~~kKvGH~GTLDP~AsGvLiv~vG~aTkl~~~~~~~~K~Y~~~~~lG~~TdT~D~~ 80 (210)
T cd00506 1 GLFAVDKPQGPSSHDVVDTIRRIFLAEKVGHGGTLDPFATGVLVVGIGKATKLLKHLLAATKDYTAIGRLGQATDTFDAT 80 (210)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCccccCCCCcCCCcCeeEEEEEECHHHhhhHHHhcCCceEEEEEEECCcCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--CeEE
Q psy1758 744 GKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PYLT 821 (1527)
Q Consensus 744 g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~~~~ 821 (1527)
|+|++++++.|+|.++|++++++|+|+++|+||+|||+|+||||||||||+|++||+++|+++||++++++|+. |.+.
T Consensus 81 G~v~~~~~~~~it~e~l~~~l~~f~G~i~Q~pP~ySAvKv~G~raYelAR~G~~v~~~~r~v~I~~i~ll~~~~~~~~~~ 160 (210)
T cd00506 81 GQVIEETPYDHITHEQLERALETLTGDIQQVPPLYSAVKRQGQRAYELARRGLLVPDEARPPTIYELLCIRFNPPHFLLE 160 (210)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHCCCeEEEeCCchheEEECCHhHHHHHHCCCccccCcEeEEEEEEEEEEEcCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 5899
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHH
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTI 871 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l 871 (1527)
|+++||+||||||||||||.+|||+|||++|||+++|+|++++|++++++
T Consensus 161 ~~v~cs~GTYIRsL~~Dig~~Lg~~a~l~~L~R~~~G~f~~~~a~~l~~l 210 (210)
T cd00506 161 VEVVCETGTYIRTLIHDLGLELGVGAHVTELRRTRVGPFKVENAVTLHHL 210 (210)
T ss_pred EEEEECCCcCHHHHHHHHHHHhCCcEEEEEEEEEEECCCchhhccchhhC
Confidence 99999999999999999999999999999999999999999999998764
No 47
>PRK02193 truB tRNA pseudouridine synthase B; Provisional
Probab=100.00 E-value=1.7e-66 Score=582.50 Aligned_cols=234 Identities=38% Similarity=0.535 Sum_probs=222.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCcc
Q psy1758 665 VLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEG 744 (1527)
Q Consensus 665 ~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~g 744 (1527)
||++|||.||||||||+++||.++.+|+||+|||||+||||||+|+|+|||+++|+++.+|+|+++++||.+|||+|++|
T Consensus 2 il~i~KP~G~tS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D~~G 81 (279)
T PRK02193 2 IKLLYKPKGISSFKFIKNFAKTNNIKKIGHTGTLDPLASGLLLVATDEDTKLIDYLDQKDKTYIAKIKFGFISTTYDSEG 81 (279)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccCccCCCcCeeEEEEEEChhhhhhHHhccCCcEEEEEEEeCCcccCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCC--eEEE
Q psy1758 745 KIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP--YLTL 822 (1527)
Q Consensus 745 ~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~--~~~~ 822 (1527)
+|+++.++.+++.+++++++++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++|+.| .+.|
T Consensus 82 ~i~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~~ 161 (279)
T PRK02193 82 QIINVSQNIKVTKENLEEALNNLVGSQKQVPPVFSAKKVNGKRAYDLARQGKQIELKPIEIKISKIELLNFDEKLQNCVF 161 (279)
T ss_pred CEEeecCCCCCCHHHHHHHHHhCcCeEEEeCChHHeEeeCCHhHHHHHhCCceeccCCeeEEEEEEEEEEEcCCCceEEE
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999875 8999
Q ss_pred EEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeecccc
Q psy1758 823 RIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDLL 902 (1527)
Q Consensus 823 ~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~~ 902 (1527)
+|+||+||||||||||||.+|||+|||++|||+++|+|++++ +.. .++|++ +.++|.+.++++.
T Consensus 162 ~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~------l~~--------~l~p~~--~~~lp~v~l~~~~ 225 (279)
T PRK02193 162 MWVVSRGTYIRSLIHDLGKMLKTGAYMSDLERTKIGNLDKNF------LNQ--------SLNPLD--LIDLEQVKLDKEE 225 (279)
T ss_pred EEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCcCHHH------HHh--------hcChhh--HhhCCeEEeCHHH
Confidence 999999999999999999999999999999999999998766 211 367775 4489999999999
Q ss_pred cceeccCccccc
Q psy1758 903 SKRFLHGQNLFL 914 (1527)
Q Consensus 903 ~~~i~nG~~i~l 914 (1527)
...+.||+.+..
T Consensus 226 ~~~i~nG~~i~~ 237 (279)
T PRK02193 226 LELLLQGKKISF 237 (279)
T ss_pred HHHHHCcCcccc
Confidence 999999999854
No 48
>KOG0464|consensus
Probab=100.00 E-value=2e-62 Score=544.05 Aligned_cols=465 Identities=25% Similarity=0.386 Sum_probs=403.5
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
.+..++|||+|++|+|+||||..+++++.+|.+...+.+++ ++.|....|||||||+.+....|+|+|+++|+|||||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence 34578999999999999999999999999999998888765 7999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh-------
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK------- 1067 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~------- 1067 (1527)
|.||.-+++|.++..|+++.|+||+.|+++||..+|+++.++++|.+.|+||||+..++++..++.+++.+..
T Consensus 112 hvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~l 191 (753)
T KOG0464|consen 112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQL 191 (753)
T ss_pred cceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999988875521
Q ss_pred ---------------------hc---c---ccc-----------------------------------------------
Q psy1758 1068 ---------------------LC---A---TEE----------------------------------------------- 1073 (1527)
Q Consensus 1068 ---------------------l~---~---~~~----------------------------------------------- 1073 (1527)
++ . .+.
T Consensus 192 pi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~ 271 (753)
T KOG0464|consen 192 PIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENF 271 (753)
T ss_pred cccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccc
Confidence 00 0 000
Q ss_pred ------------------ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC-------CCCCceeEEEe
Q psy1758 1074 ------------------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN-------SNNPLQLQIIS 1128 (1527)
Q Consensus 1074 ------------------~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~-------~~~p~~~~V~~ 1128 (1527)
+...|+.+.||.++. |+++|++++.-++|+|... ....++++.|+
T Consensus 272 d~i~a~elksai~~lt~aq~a~~i~cgsaiknk----------giqplldavtmylpspeernyeflqwykddlcalafk 341 (753)
T KOG0464|consen 272 DKIDAEELKSAIHELTCAQKAAPILCGSAIKNK----------GIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFK 341 (753)
T ss_pred cccCHHHHHHHHHHHhhhhhhcceehhhhhccc----------CccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhh
Confidence 001466677777665 9999999999999999642 23568899999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 1208 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~ 1208 (1527)
+.+|...|.++|.|||+|+++..-.|.+.+. .-.+.+.+++.....+..+++++.||+|...+|++...+|||+..
T Consensus 342 vlhdkqrg~l~fmriysgsi~~~~ai~nin~----~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtiva 417 (753)
T KOG0464|consen 342 VLHDKQRGPLSFMRIYSGSIHNNLAIFNING----MCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVA 417 (753)
T ss_pred hhcccccCceeEEEEecccccCceeeeeccc----ccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEe
Confidence 9999999999999999999999999988754 345789999999999999999999999999999999999999965
Q ss_pred CCC------------------------CCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceE
Q psy1758 1209 PSK------------------------PNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLR 1264 (1527)
Q Consensus 1209 ~~~------------------------~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~ 1264 (1527)
... ..-+.++++|+|++.+.+.|..- .+ ..++..+|+-+..+||||+
T Consensus 418 skasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~---~k------~~d~ehale~lqredpslk 488 (753)
T KOG0464|consen 418 SKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSL---RK------LNDFEHALECLQREDPSLK 488 (753)
T ss_pred cchhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCccc---cc------chhHHHHHHHHhccCCcee
Confidence 421 12467899999999999986321 11 2456677777888899999
Q ss_pred EEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCeeeEEEe------------c-------------------
Q psy1758 1265 VTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL------------N------------------- 1312 (1527)
Q Consensus 1265 v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~V~yre~------------~------------------- 1312 (1527)
+..++++|+ .++.||||||++++.+|++|+ |+++-+++-+|.|||. +
T Consensus 489 ir~d~dsgq-til~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~ 567 (753)
T KOG0464|consen 489 IRFDPDSGQ-TILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEE 567 (753)
T ss_pred EEecCCCCc-eEEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeecc
Confidence 999999999 999999999999999999987 9999999999999984 0
Q ss_pred ----------------------------------------c---------------------------------------
Q psy1758 1313 ----------------------------------------G--------------------------------------- 1313 (1527)
Q Consensus 1313 ----------------------------------------g--------------------------------------- 1313 (1527)
|
T Consensus 568 tqa~ip~kkiefe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqe 647 (753)
T KOG0464|consen 568 TQAHIPFKKIEFELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQE 647 (753)
T ss_pred ccccccceeEEeeccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -------eEeeeeEEEEEEecC-cchHHHHHHHhccCCeEeeeeecCCcEE-EEEEEechhhhcChHHHHccccceeEEE
Q psy1758 1314 -------ELYEPYENLFVDIEE-INQGIIMQKLNYRGGDLKNIEINEKERV-RLEYRIPSRGLIGFQNEFITLTRGTGLI 1384 (1527)
Q Consensus 1314 -------~llEP~~~~~i~vp~-e~~G~v~~~l~~rrG~~~~~~~~~~~~~-~l~~~vP~~~l~g~~~~l~s~T~G~g~~ 1384 (1527)
+++||.|+++|++-. +|...|+.+|.+|||.+...+...+..+ ++-+.+|++|+.||+..|+++|+|.|.|
T Consensus 648 alkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ 727 (753)
T KOG0464|consen 648 ALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADF 727 (753)
T ss_pred HHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceE
Confidence 589999999999987 9999999999999999999987644443 6999999999999999999999999999
Q ss_pred EeEecceeecccccccccccc
Q psy1758 1385 SHVFEEYAPFYNKSKYDLGKR 1405 (1527)
Q Consensus 1385 ~~~f~~Y~~~~~~~~~~i~~~ 1405 (1527)
..+|.+|+.+.++++-++-++
T Consensus 728 ale~~~yqamn~~dk~~il~k 748 (753)
T KOG0464|consen 728 ALEFRGYQAMNEHDKMEILKK 748 (753)
T ss_pred EEEecchhhcChHHHHHHHHh
Confidence 999999999876555555433
No 49
>cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4. This group consists of Eukaryotic TruB proteins similar to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4, makes psi55 in the T loop of both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=100.00 E-value=3e-61 Score=546.12 Aligned_cols=201 Identities=34% Similarity=0.480 Sum_probs=196.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcc-----------------------------ccccccCCCCCCCeEEEEEEecccc
Q psy1758 664 GVLLLDKPYGLSSNNALKKIKYLLNA-----------------------------KKVGYTGTLDPFATGLLPLCFGEAT 714 (1527)
Q Consensus 664 G~~~v~Kp~g~ts~~~~~~~~~~~~~-----------------------------~kvgh~gtLdp~a~Gvl~~~~g~~t 714 (1527)
|||+||||+|||||+|++++|++|+. +||||+|||||+||||||||+|+||
T Consensus 1 Gil~i~KP~G~TS~~vv~~lk~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KiGH~GTLDPlAsGVLvvgvG~aT 80 (312)
T cd02867 1 GVFAINKPSGITSAQVLNDLKPLFLNSALFKDKIQRAVAKRGKKARRRKGRKRSKLKIGHGGTLDPLATGVLVVGVGAGT 80 (312)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHhcccccccchhhhhhhhhhhhhhhhccccccccccccccccCCccceeEEEEECcHH
Confidence 89999999999999999999999985 7999999999999999999999999
Q ss_pred cccccccCCCcEEEEEEEECccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhc
Q psy1758 715 KFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARS 794 (1527)
Q Consensus 715 k~~~~~~~~~K~Y~~~~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~ 794 (1527)
|+++|++..+|+|+++++||.+|||+|++|+|++++++.|+|.++|+++|++|+|+++|+||+|||+|+||||||||||+
T Consensus 81 K~l~~~l~~~K~Y~~~~~lG~~TdT~D~eG~Ii~~~~~~~it~e~i~~~l~~F~G~i~Q~PP~ySAvKv~GkrlYeyAR~ 160 (312)
T cd02867 81 KQLQDYLSCSKTYEATGLFGASTTTYDREGKILKKKPYSHITREDIEEVLAKFRGDIKQVPPLYSALKMDGKRLYEYARE 160 (312)
T ss_pred HHHHHHhcCCceEEEEEEeCCcccCCCCCCCEEEecCCCCCCHHHHHHHHHhcceeeeeeCcchheeeeCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccc--ceeEEEEEEEEEEEe--CCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCcccccc
Q psy1758 795 GITIKRK--LRYIKIYKITIIDYT--IPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK 864 (1527)
Q Consensus 795 g~~~~~~--~r~~~i~~~~~~~~~--~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~ 864 (1527)
|+++|++ +|.|+||++++++|+ .|.++|+|+||+||||||||||||.+|||+|||+.|||+++|+|++++
T Consensus 161 G~~v~~~~~~R~V~I~~~~l~~~~~~~~~~~~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~L~Rt~~g~f~~~~ 234 (312)
T cd02867 161 GKPLPRPIERRQVVVSELLVKDWIEPGPLFTRTVEEEGKQYERSVVKMLGKELKTFAEVTELTATAEGDPVEEV 234 (312)
T ss_pred CccccCCCCCceEEEEEEEEEeccCCCCeEEEEEEeCCcCCHHHHHHHHHHHhCCCeEEEEEEeeeecCccccc
Confidence 9999987 999999999999987 589999999999999999999999999999999999999999998864
No 50
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-58 Score=514.46 Aligned_cols=224 Identities=40% Similarity=0.679 Sum_probs=212.1
Q ss_pred ccccccee---eEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEE
Q psy1758 656 KKNKNIIH---GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIH 732 (1527)
Q Consensus 656 ~~~~~~~~---G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~ 732 (1527)
++.++.++ ||+++|||.|||||||++|+||+|+.+|+||+|||||+||||||+|+|+|||+++||+..+|+|+++++
T Consensus 5 ~~~~~~i~~~~Gil~ldKP~G~tS~~~v~~vkkil~~~K~GH~GTLDP~atGvLpi~ig~aTKl~~~l~~~~K~Y~a~~~ 84 (271)
T COG0130 5 YPEKRPIEIYIGVINLDKPPGPTSHEVVAWVKRILGVEKAGHGGTLDPLATGVLPICLGEATKLVQYLLDADKEYVATVR 84 (271)
T ss_pred CccccccccccceEEeeCCCCCCHHHHHHHHHHHhCccccccccccCCcccceEEEEechhHhHHHHHhhCCcEEEEEEE
Confidence 45566778 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEE
Q psy1758 733 LGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITI 812 (1527)
Q Consensus 733 ~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~ 812 (1527)
||.+|| +.++|++++++|+|+|+|+||+|||+| .++++ |.|+||++++
T Consensus 85 lG~~t~-----------------~~e~i~~~l~~F~G~I~Q~PP~~SAvK-------------~~v~~--R~V~i~~l~~ 132 (271)
T COG0130 85 LGDQTD-----------------SEEEVRAALEAFTGEIYQIPPMFSAVK-------------REVER--RKITIYDLLE 132 (271)
T ss_pred eCCcCC-----------------CHHHHHHHHHhcceeeEecCCchhhcc-------------ceEee--EEEEEEEeee
Confidence 999998 789999999999999999999999999 66776 9999999999
Q ss_pred EEEeCCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccc
Q psy1758 813 IDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSS 892 (1527)
Q Consensus 813 ~~~~~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~ 892 (1527)
++++.|.+.|+|+||+|||||+||+|||..|||+|||+.||||++|+|+++++++++++..+........++|++.++.+
T Consensus 133 ~~~~~~~~~~~v~CskGTYIRtL~~DlG~~LG~gahm~~LrRt~~g~f~~~~~~~l~~l~~~~~~~~~~~~~p~e~~l~~ 212 (271)
T COG0130 133 LDFDRNLVTLRVECSKGTYIRTLARDLGEALGCGAHMSELRRTRVGPFSEEDAVTLELLDELDAESLLRLLLPLESALSD 212 (271)
T ss_pred ccCCCceEEEEEEEecCcCHHHHHHHHHHHHCCccchhhhccccccccccccccchhhHHHHHhhhhhccccchhHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999776543334567999999999
Q ss_pred cceeeecccccceeccCcc
Q psy1758 893 FGIIYLSDLLSKRFLHGQN 911 (1527)
Q Consensus 893 lP~i~l~d~~~~~i~nG~~ 911 (1527)
+|++.++++....+.+|++
T Consensus 213 lpk~~i~~~~~~~i~~G~~ 231 (271)
T COG0130 213 LPRLVLKDSAANAIKYGAK 231 (271)
T ss_pred CCcEecCHHHHHHHHcCCc
Confidence 9999999999999999998
No 51
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=1.1e-55 Score=547.37 Aligned_cols=366 Identities=24% Similarity=0.344 Sum_probs=326.3
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc------eecchhhhhcccceeEeeeeEEEEecCeEEEEEeC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA------RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDT 992 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~------~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDT 992 (1527)
..++|||+|+||+|||||||+++|++.+|.+.+.+.+.. ..+|+++.|++||+|+.++...+.|+++++|+|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 357899999999999999999999999998887776541 45899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh----
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL---- 1068 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l---- 1068 (1527)
|||.||..++.++++.+|++|+|||+++|+.+||+.+|+.+...++|+++|+||+|+.++++.++++++++.|..-
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 9999999999999999999999999999999999999999999999999999999999999888888887765310
Q ss_pred -------------------------c-------------cccc---------c---------------------------
Q psy1758 1069 -------------------------C-------------ATEE---------Q--------------------------- 1074 (1527)
Q Consensus 1069 -------------------------~-------------~~~~---------~--------------------------- 1074 (1527)
. ..++ .
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~ 246 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAG 246 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcC
Confidence 0 0000 0
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC---------CCCCceeEEEeeec---cccCceEEEEE
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLEY---SSYLGKIGIGR 1142 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~---------~~~p~~~~V~~~~~---d~~~G~v~~gr 1142 (1527)
.-+||+++||++++ |+.+||++|++++|+|... .+.||.++|||+.+ +++.|+++|+|
T Consensus 247 ~~~PV~~GSA~~n~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvR 316 (526)
T PRK00741 247 ELTPVFFGSALNNF----------GVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVR 316 (526)
T ss_pred CeEEEEEeecccCc----------CHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEE
Confidence 01799999999999 9999999999999999532 24679999999984 56999999999
Q ss_pred eecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCC
Q psy1758 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 1222 (1527)
Q Consensus 1143 V~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~ 1222 (1527)
|+||+++.||.|++.++ | +++|+++++.+.|.++.++++|.|||||++.|++++++|||||+.+ +..+++++.++
T Consensus 317 V~sG~l~~g~~v~~~~~--~--k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL~~~~-~~~~~~i~~~~ 391 (526)
T PRK00741 317 VCSGKFEKGMKVRHVRT--G--KDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KLKFTGIPNFA 391 (526)
T ss_pred EeccEECCCCEEEeccC--C--ceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCCccCCC-ccccCCCCCCC
Confidence 99999999999998766 3 4689999999999999999999999999999999999999999876 66788888999
Q ss_pred CceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEE
Q psy1758 1223 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSV 1301 (1527)
Q Consensus 1223 P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~v 1301 (1527)
|++++++.|.+. + +..||.++|.++.+|| ++++.+++++++ ++|+|+|+|||+|+++||+++ |+++.+
T Consensus 392 P~~~~~v~p~~~---~------d~~kl~~aL~~L~eED-~l~~~~~~~t~e-~il~g~G~lhleV~~~RL~~ey~v~v~~ 460 (526)
T PRK00741 392 PELFRRVRLKNP---L------KQKQLQKGLVQLSEEG-AVQVFRPLDNND-LILGAVGQLQFEVVAHRLKNEYNVEAIY 460 (526)
T ss_pred ccEEEEEEECCc---h------hHHHHHHHHHHHhhcC-CeEEEECCCCCC-EEEEEEeHHHHHHHHHHHHHHhCCEEEE
Confidence 999999998654 2 3479999999999999 599999999999 999999999999999999865 999999
Q ss_pred ecCeeeEEE
Q psy1758 1302 SRPRVIFKT 1310 (1527)
Q Consensus 1302 s~P~V~yre 1310 (1527)
++|+|++-.
T Consensus 461 ~~~~v~~~r 469 (526)
T PRK00741 461 EPVGVATAR 469 (526)
T ss_pred ecCCccEEE
Confidence 999999854
No 52
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=5.6e-55 Score=541.33 Aligned_cols=364 Identities=22% Similarity=0.307 Sum_probs=325.2
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc------ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDT 992 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDT 992 (1527)
..++|||+|+||+|||||||+++|++.+|.+.+.+.++ .+++|+++.|++||+|+.++...++|+++++|||||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 36789999999999999999999999999887766654 368999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh----
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL---- 1068 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l---- 1068 (1527)
|||.+|..++.++++.+|++|+|||++.|+..||+.+|+.+...++|+++|+||+|+..++++++++++++.+...
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 9999999999999999999999999999999999999999999999999999999999888888888888766320
Q ss_pred -------------------------c---c--c--------cc---------------------------c---------
Q psy1758 1069 -------------------------C---A--T--------EE---------------------------Q--------- 1074 (1527)
Q Consensus 1069 -------------------------~---~--~--------~~---------------------------~--------- 1074 (1527)
. . . .. .
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 247 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGG 247 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcC
Confidence 0 0 0 00 0
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC---------CCCCceeEEEeeec--c-ccCceEEEEE
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLEY--S-SYLGKIGIGR 1142 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~---------~~~p~~~~V~~~~~--d-~~~G~v~~gr 1142 (1527)
.-+||+++||+++. |+++||+.+++++|+|... .++||.++|||+.+ | ++.||++|+|
T Consensus 248 ~~~PV~~GSA~~n~----------Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~R 317 (527)
T TIGR00503 248 EMTPVFFGTALGNF----------GVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMR 317 (527)
T ss_pred CeeEEEEeecccCc----------cHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEE
Confidence 01688999999998 9999999999999999642 25789999999988 7 5999999999
Q ss_pred eecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCC
Q psy1758 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 1222 (1527)
Q Consensus 1143 V~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~ 1222 (1527)
|+||+++.|++|++.++ | +++|+++++.+.|.++.++++|.|||||++.|++++++|||||+.+ +..+++++.++
T Consensus 318 V~sG~l~~g~~v~~~~~--~--k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~~~~-~~~~~~i~~~~ 392 (527)
T TIGR00503 318 VVSGKYEKGMKLKHVRT--G--KDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KIKFTGIPNFA 392 (527)
T ss_pred EeeeEEcCCCEEEecCC--C--CcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEecCCC-ceeecCCCCCC
Confidence 99999999999998766 3 4689999999999999999999999999999999999999999844 56778888899
Q ss_pred CceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHh-cCcEEEE
Q psy1758 1223 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-EGYELSV 1301 (1527)
Q Consensus 1223 P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrr-eg~ev~v 1301 (1527)
|.+++++.+.+. + +..||.++|.++.+||| +++.+++++++ ++|+|+|+|||+|+++||++ +|+++.+
T Consensus 393 P~~~~~v~~~~~---~------d~~kl~~aL~~L~eED~-l~v~~~~~t~e-~il~g~GelhleV~~~RL~~ey~v~v~~ 461 (527)
T TIGR00503 393 PELFRRIRLKDP---L------KQKQLLKGLVQLSEEGA-VQVFRPLDNND-LIVGAVGVLQFDVVVYRLKEEYNVEARY 461 (527)
T ss_pred cceEEEEEECCh---h------hHHHHHHHHHHHHhhCC-eEEEEcCCCCC-EEEEEEeHHHHHHHHHHHHHHhCCeEEE
Confidence 999999998653 2 35799999999999998 99999999999 99999999999999999986 5999999
Q ss_pred ecCeeeE
Q psy1758 1302 SRPRVIF 1308 (1527)
Q Consensus 1302 s~P~V~y 1308 (1527)
++|+|+.
T Consensus 462 ~~~~v~~ 468 (527)
T TIGR00503 462 EPVNVAT 468 (527)
T ss_pred eCCCceE
Confidence 9999987
No 53
>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=100.00 E-value=1.8e-56 Score=491.46 Aligned_cols=209 Identities=23% Similarity=0.274 Sum_probs=202.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHHH----Hhcccccccc-CCCCCCCeEEEEEEecccccccccccC--CCcEEEEEEEECcc
Q psy1758 664 GVLLLDKPYGLSSNNALKKIKY----LLNAKKVGYT-GTLDPFATGLLPLCFGEATKFSNYLSE--ADKYYEAIIHLGIT 736 (1527)
Q Consensus 664 G~~~v~Kp~g~ts~~~~~~~~~----~~~~~kvgh~-gtLdp~a~Gvl~~~~g~~tk~~~~~~~--~~K~Y~~~~~~G~~ 736 (1527)
|+|+||||+||||+++++.+++ .++.+|+||+ |||||+|||||++|+|++||++++++. ++|+|+++++||.+
T Consensus 1 GilvvnKP~Gi~s~~~~~~~~~~l~~~~~~~k~~~~vhrLD~~aSGvl~~a~~~~tkl~~~~~~~~~~K~Y~~~~~lg~~ 80 (226)
T cd02868 1 GLFAVYKPPGVHWKHVRDTIESNLLKYFPEDKVLVGVHRLDAFSSGVLVLGVNHGNKLLSHLYSNHPTRVYTIRGLLGKA 80 (226)
T ss_pred CEEEEEcCCCCChhHHHHHHHHHHHHHccccceeeEccccCCCCceEEEEEeChhHhHHHHHHhcCCCeEEEEEEEEccc
Confidence 8999999999999999998776 4577899999 999999999999999999999999996 47999999999999
Q ss_pred ccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEe
Q psy1758 737 TETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT 816 (1527)
Q Consensus 737 tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~ 816 (1527)
|||+|++|+|++++++.|++.++|+++|++|+|.++|.||.|||+|+||+|||+|||+|+++|+++|+|+||++++++|+
T Consensus 81 TdT~D~~G~v~~~~~~~~it~~~i~~~l~~f~g~~~q~~p~~sa~kv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~ 160 (226)
T cd02868 81 TENFFHTGRVIEKTTYDHITREKIERLLAVIQSGHQQKAFELCSVDDQSQQAAELAARGLIRPADKSPPIIYGIRLLEFR 160 (226)
T ss_pred cCCCCCCCCEEEecCCCCCCHHHHHHHHHHhhCCceEECCceEEEeeCCHHHHHHHHCCCccCCCCcceEEEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEecccc--cHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHH
Q psy1758 817 IPYLTLRIHCSKGT--YIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTII 872 (1527)
Q Consensus 817 ~~~~~~~v~cs~gt--Yirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~ 872 (1527)
.|.|+|+|+||+|| ||||||+|||.+|||+|||++|||+++|+|++++|++++++.
T Consensus 161 ~p~~~~~v~cskGT~~YIRsL~~Dig~~Lg~~a~~~~L~R~~~G~f~~~~a~~~~~~~ 218 (226)
T cd02868 161 PPEFTLEVQCINETQEYLRKLIHEIGLELRSSAVCTQVRRTRDGPFTVDDALLRKQWN 218 (226)
T ss_pred CCeEEEEEEEECCCHHHHHHHHHHHHHHhCCcEEEEEEEeeEECCCCHHHcccHHHcC
Confidence 99999999999999 999999999999999999999999999999999999998874
No 54
>KOG0469|consensus
Probab=100.00 E-value=4.1e-55 Score=495.69 Aligned_cols=466 Identities=26% Similarity=0.392 Sum_probs=383.6
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe----------------
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---------------- 982 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---------------- 982 (1527)
..++||+.+|+|+|||||||.+.|...+|.+......+.++||+...|+||||||.+...++.+
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 4689999999999999999999999999999877777789999999999999999999888755
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
++..|||||.|||.||+.|+..+|+..|++++|||+.+|+..||+.++++|....+.+++|+||+|+.--..+--.+++.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999984222222223333
Q ss_pred HHHhh----hc-------c---ccccc---CCcEEEeccccCCcC--------------------------C---Cccc-
Q psy1758 1063 DLFDK----LC-------A---TEEQL---DFPVIYTSALHGYAN--------------------------E---NSKA- 1095 (1527)
Q Consensus 1063 ~~~~~----l~-------~---~~~~~---~~pvi~~SA~~g~~~--------------------------~---~~~~- 1095 (1527)
+.|.. .. . ...++ .-.+-++|+++||+- + +...
T Consensus 176 qtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktk 255 (842)
T KOG0469|consen 176 QTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTK 255 (842)
T ss_pred HHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCC
Confidence 33321 11 0 00111 113678899999861 0 0000
Q ss_pred --------------------------------------------------------c-c--------------CCChhHH
Q psy1758 1096 --------------------------------------------------------R-Q--------------GNMIPLF 1104 (1527)
Q Consensus 1096 --------------------------------------------------------~-~--------------~gi~~Ll 1104 (1527)
. . ..-+.||
T Consensus 256 k~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadall 335 (842)
T KOG0469|consen 256 KWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALL 335 (842)
T ss_pred cccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHHHHH
Confidence 0 0 1115788
Q ss_pred HHHHhhcCCCC-------------------------CCCCCCceeEEEeeeccccCce-EEEEEeecCccccCCEEEEec
Q psy1758 1105 EAILKYVPVHK-------------------------DNSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMN 1158 (1527)
Q Consensus 1105 ~~i~~~lp~p~-------------------------~~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~Gd~v~~~~ 1158 (1527)
+.|.-++|+|. ||+++|+.|+|+++......|| .+|||||||++..|+.+.+..
T Consensus 336 emIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqg 415 (842)
T KOG0469|consen 336 EMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQG 415 (842)
T ss_pred HHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeC
Confidence 88888999983 5789999999999988877887 689999999999999999987
Q ss_pred CC--CCCcCc---ceeeeEEEeecCceeEeeeeecCCEEEEecceecc-cCCeeeCCCCCCCCCCCccC-CCceeEEEEe
Q psy1758 1159 GP--DDKPNK---AKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC-IGSTICDPSKPNGLPMLNID-EPTLTINFMV 1231 (1527)
Q Consensus 1159 ~~--~g~~~~---~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~-iGdTi~~~~~~~~l~~~~~~-~P~l~~~~~~ 1231 (1527)
++ .|++.. ..|.....++|...++++...||+|+++.|+++.- .+-||+..+....+..+++. .|++.+++++
T Consensus 416 PnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFSVSPVV~VAVe~ 495 (842)
T KOG0469|consen 416 PNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVMKFSVSPVVRVAVEA 495 (842)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEEEeeccceEEEEEec
Confidence 64 233222 12333345789999999999999999999999854 47788887766666655555 5999999987
Q ss_pred cCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc--CcEEEEecCeeeEE
Q psy1758 1232 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE--GYELSVSRPRVIFK 1309 (1527)
Q Consensus 1232 ~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre--g~ev~vs~P~V~yr 1309 (1527)
.+. -+.+||-+.|.|++.+||...+..++ .|+ .++.|-|||||||++..|+.. ++.+..|+|-|.||
T Consensus 496 Knp---------~DLpKLvEGLkrLakSDP~v~~~~~e-sGe-hiiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsYr 564 (842)
T KOG0469|consen 496 KNP---------ADLPKLVEGLKRLAKSDPMVQCIIEE-SGE-HIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYR 564 (842)
T ss_pred CCh---------hhhHHHHHHHHHHhccCCeEEEEecc-CCc-eEEeccchhhHHHHHhhHhhcccCCceecCCCeeeee
Confidence 653 14689999999999999999998874 578 899999999999999999854 99999999999999
Q ss_pred Ee------------------------------------------------------------------------c-----
Q psy1758 1310 TL------------------------------------------------------------------------N----- 1312 (1527)
Q Consensus 1310 e~------------------------------------------------------------------------~----- 1312 (1527)
|+ +
T Consensus 565 Etvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~N 644 (842)
T KOG0469|consen 565 ETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPN 644 (842)
T ss_pred cccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCc
Confidence 95 0
Q ss_pred -----------------------------c------------------------------------------------eE
Q psy1758 1313 -----------------------------G------------------------------------------------EL 1315 (1527)
Q Consensus 1313 -----------------------------g------------------------------------------------~l 1315 (1527)
| .+
T Consensus 645 ll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l 724 (842)
T KOG0469|consen 645 LLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPIL 724 (842)
T ss_pred EEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCcee
Confidence 0 58
Q ss_pred eeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeec-CCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeec
Q psy1758 1316 YEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEIN-EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF 1394 (1527)
Q Consensus 1316 lEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~-~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~ 1394 (1527)
+||++.++|++|+.++|.|.+-|+++||.+.+.++. ++....+++.+|+.|.+||..+|+|.|+|+|.-++.|+||++.
T Consensus 725 ~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~l 804 (842)
T KOG0469|consen 725 QEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSIL 804 (842)
T ss_pred cCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccceeeeccccC
Confidence 999999999999999999999999999999998876 4557889999999999999999999999999999999999998
Q ss_pred c
Q psy1758 1395 Y 1395 (1527)
Q Consensus 1395 ~ 1395 (1527)
+
T Consensus 805 p 805 (842)
T KOG0469|consen 805 P 805 (842)
T ss_pred C
Confidence 8
No 55
>KOG1144|consensus
Probab=100.00 E-value=3e-53 Score=499.40 Aligned_cols=486 Identities=28% Similarity=0.420 Sum_probs=388.0
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC------------------eEEEEEeCCC
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH------------------GSITFLDTPG 125 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~------------------~~i~~iDTPG 125 (1527)
....|.|.+||+||+++|||-|++.+++.+++.++.+|||+.++...+...+ -.+.+|||||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 3457899999999999999999999999999999999999999987765431 1378899999
Q ss_pred hhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc-------chh-------------
Q psy1758 126 HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD-------INL------------- 185 (1527)
Q Consensus 126 ~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~-------~~~------------- 185 (1527)
||.|.+++.++.+.||++|||+|+.+|+.+||++.++.++..+.|+||++||+|+.. ++.
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999863 110
Q ss_pred ------HHHHHHHhhhccc------ccccCCCCcEEEeeccCCCChhHHHHHHHHHHHH-HhhcCCCCCCCceEEEEEee
Q psy1758 186 ------DRIKQDLISEQVI------PEEYGGASPFISISAKTGVGINKLLENISLQAEI-LELKAPVTTPAKGVIIESRL 252 (1527)
Q Consensus 186 ------~~~~~~l~~~~~~------~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~-~~~~~~~~~p~~~~v~~~~~ 252 (1527)
..+..++.++++. ..+.+..+.++|+||.+|+||.+|+-+|+.+... +..+..--...++.|+++..
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKv 709 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKV 709 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEe
Confidence 0111122222221 1223456789999999999999999999876543 22222233457899999999
Q ss_pred cCCCceEEEEEeeccEEEeccEEEe----cceeeeEeEeeccCC----------ceeeecCCCcceEe--cCCCCCCCCC
Q psy1758 253 DKGKGPVATVLIQSGTLRCSDIVVA----GASYGRIRSMLNENG----------KNILEAGPSIPVEI--QGLTKVPFSG 316 (1527)
Q Consensus 253 ~~~~G~v~~~~v~~G~l~~gd~vv~----g~~~~kVr~i~~~~g----------~~v~~a~~~~~v~I--~gl~~~~~~G 316 (1527)
..|.|+...+++.+|.|+.||.|++ |+....||.++..+- ...+++.+.+.+.| .+|.+. .+|
T Consensus 710 ieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEka-iaG 788 (1064)
T KOG1144|consen 710 IEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKA-IAG 788 (1064)
T ss_pred ecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHH-hcC
Confidence 9999999999999999999998865 455567777765432 11233444444444 455554 799
Q ss_pred CeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceee
Q psy1758 317 EELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKI 396 (1527)
Q Consensus 317 ~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i 396 (1527)
..++++.-+++..++.. .-...+++.++.+.. ..-++.|.|.+.||+|||+++|.. ++|
T Consensus 789 ~~l~VvgpeDd~e~lk~-------------~~m~dl~~~l~~Id~---sgeGv~vqastlgslealleflk~-----~kI 847 (1064)
T KOG1144|consen 789 TRLLVVGPEDDIEELKE-------------EAMEDLESVLSRIDK---SGEGVYVQASTLGSLEALLEFLKT-----VKI 847 (1064)
T ss_pred CeeEEeCCcccHHHHHH-------------HHHHHHHHHHHHhhc---cCCceEEEecccchHHHHHHHHhh-----cCc
Confidence 99999976665544421 112345556665543 335789999999999999999987 499
Q ss_pred eEEeeccCcCChhhHHHHHhc------CCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceee
Q psy1758 397 QVIHNAVGNINESDINLAIAS------KAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKE 470 (1527)
Q Consensus 397 ~iv~~~vG~it~~Dv~~A~~~------~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e 470 (1527)
+|...++|||.+.||+.|++. .|+||||.|++..+++++|.+.||+|++.+|||||||.+..+.+..++...++
T Consensus 848 Pv~gi~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~~gVkIF~adiIYhLfD~f~~y~e~~ke~kkke 927 (1064)
T KOG1144|consen 848 PVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADEMGVKIFCADIIYHLFDAFTKYIEEIKEEKKKE 927 (1064)
T ss_pred ccccccccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHHHHhhCceeeehhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999985 69999999999999999999999999999999999999999999888766555
Q ss_pred ---eeeEeEEEe----EEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccc
Q psy1758 471 ---NLLGLAEIR----QVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLS 543 (1527)
Q Consensus 471 ---~~~g~a~v~----~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~ 543 (1527)
.-+.++.++ ++|+ ++.+.|.|+.|..|.+++|+++||.. .+.|+-|+|.||.++++.|.++++|+|+++.+
T Consensus 928 ~~~~AvFPc~L~ilpn~ifN-~RdPiv~GV~V~~GilkiGTPiCv~~-r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKi 1005 (1064)
T KOG1144|consen 928 SADEAVFPCVLQILPNCIFN-KRDPIVLGVDVEEGILKIGTPICVPK-REFIDLGRVASIENNHKPVDYAKKGQEVAIKI 1005 (1064)
T ss_pred ccCceeeeeehhhhhHhhcc-CCCCeEEEEEeecCeeecCCceEEec-cceeeeeeeeeecccCcccchhhcCCeEEEEE
Confidence 455666554 4777 66679999999999999999999996 66889999999999999999999999999998
Q ss_pred hhhhhhhhhhHHhhhhhccCcceeeeEEEEE
Q psy1758 544 RIENQIQRDISEIIAFDIQNPIINIITITEV 574 (1527)
Q Consensus 544 r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V 574 (1527)
...+.-.+ .....||+..|+..+.||-.++
T Consensus 1006 e~~~~e~~-~mfGRHf~~~D~LyS~isR~SI 1035 (1064)
T KOG1144|consen 1006 EASNGEEQ-KMFGRHFDMEDILYSHISRRSI 1035 (1064)
T ss_pred ecCCCCCc-chhhcccCccchHHHHhhHhhH
Confidence 76544333 4667789999998777664443
No 56
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed
Probab=100.00 E-value=2.4e-54 Score=498.51 Aligned_cols=230 Identities=34% Similarity=0.530 Sum_probs=210.9
Q ss_pred cccccccccccceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEE
Q psy1758 650 CMQFHIKKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 729 (1527)
Q Consensus 650 ~~~~~~~~~~~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~ 729 (1527)
+|+...+--...++|||+||||.||||||||+++||+|+.+|+||+|||||+||||||+|+|+|||+++|+++.+|+|++
T Consensus 9 ~~~~~~~~~~~~~~g~l~i~Kp~g~tS~~~v~~~r~~~~~kkvGH~GTLDp~A~GvL~v~~g~atk~~~~~~~~~K~Y~~ 88 (300)
T PRK04270 9 CPPEKRPIEELIKFGVVNLDKPPGPTSHEVAAWVRDILGVEKAGHGGTLDPKVTGVLPVALGKATKVVQALLESGKEYVC 88 (300)
T ss_pred CCcccCCHHHhcCCCEEEEECCCCCCHHHHHHHHHHHhccccccCCCCCCCcCeEEEEEEEChHhhhhHHhccCCcEEEE
Confidence 45544444445799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEE
Q psy1758 730 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYK 809 (1527)
Q Consensus 730 ~~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~ 809 (1527)
+++||. ++|.++++++|++|+|++.|+||+|||+| +++|+++||+
T Consensus 89 ~~~~g~------------------~~~~~~~~~~l~~~~g~i~Q~pP~~SA~k-----------------~~~r~v~I~~ 133 (300)
T PRK04270 89 VMHLHG------------------DVPEEDIRKVFKEFTGEIYQKPPLKSAVK-----------------RRLRVRTIYE 133 (300)
T ss_pred EEEECC------------------CCCHHHHHHHHHHCCCcEEeECCHHHhcc-----------------CCceEEEEEE
Confidence 999994 37899999999999999999999999998 4699999999
Q ss_pred EEEEEEeCCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhh----hhh---h-cc
Q psy1758 810 ITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYS----EYE---R-IS 881 (1527)
Q Consensus 810 ~~~~~~~~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~----~~~---~-~~ 881 (1527)
+++++|+.|.++|+|+||+||||||||||||.+|||+|||++||||++|+|++++|++++++.+.. ... . ..
T Consensus 134 i~~~~~~~~~~~~~v~cs~GtYIRsl~~dig~~Lg~~a~~~~L~R~~~g~f~~~~a~~l~~l~~~~~~~~~~~d~~~l~~ 213 (300)
T PRK04270 134 LEILEIDGRDVLFRVRCESGTYIRKLCHDIGLALGTGAHMQELRRTRTGPFTEEDLVTLQDLADAYYFWKEDGDEEELRR 213 (300)
T ss_pred EEEEEecCCEEEEEEEECCceEHHHHHHHHHHHHCCCeEEEEEEeEEECCCCcchhcCHHHHHHhhhhhhcccchhhHHh
Confidence 999999999999999999999999999999999999999999999999999999999999997642 111 1 23
Q ss_pred ccCcccccccccceeeecccccceeccCccccc
Q psy1758 882 SLIPIDILLSSFGIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 882 ~L~pie~~L~~lP~i~l~d~~~~~i~nG~~i~l 914 (1527)
.|+|++.++.++|.+.+++.....+.||+.+..
T Consensus 214 ~LlPle~aL~~LP~V~Lde~aa~~I~nG~~L~~ 246 (300)
T PRK04270 214 VILPMEYALSHLPKIIIKDSAVDAIAHGAPLYA 246 (300)
T ss_pred hcCCHHHHhhhCCceEECHHHHHHHHcCCcccc
Confidence 699999999999999999999999999998865
No 57
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative. This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both.
Probab=100.00 E-value=5.5e-54 Score=496.27 Aligned_cols=219 Identities=34% Similarity=0.538 Sum_probs=204.3
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
.+|||+||||.||||||||+++||+|+.+||||+|||||+||||||||+|+|||+++|++..+|+|+++++||.
T Consensus 33 ~~G~l~i~KP~g~tS~~~v~~vr~~~~~kkvGH~GTLDP~A~GvL~v~~G~aTkl~~~~~~~~K~Y~~~v~lG~------ 106 (322)
T TIGR00425 33 SYGVVNLDKPSGPSSHEVVAWVRRILNVEKTGHGGTLDPKVTGVLPVCIERATRLVKSLQEAPKEYVCLMRLHR------ 106 (322)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHhcccccCCCCCCCCCCceEEEEEEChHhhccHHhccCCCEEEEEEEECC------
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEE
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 821 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~ 821 (1527)
+++.++|+++|++|+|+++|+||+|||+| +++|.++||++++++|+.|.++
T Consensus 107 ------------~~~~~~l~~~l~~f~g~i~Q~pP~~SA~k-----------------~~~r~v~I~~~~l~~~~~~~~~ 157 (322)
T TIGR00425 107 ------------DAKEEDILRVLKEFTGRIFQRPPLKSAVK-----------------RQLRVRTIYESELLEKDGKDVL 157 (322)
T ss_pred ------------CCCHHHHHHHHHHcCCcEEeeCChheEEe-----------------ccCeEEEEEEEEEEEecCCeEE
Confidence 26889999999999999999999999998 3589999999999999999999
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhh----hhh----hccccCccccccccc
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYS----EYE----RISSLIPIDILLSSF 893 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~----~~~----~~~~L~pie~~L~~l 893 (1527)
|+|+||+||||||||+|||.+|||+|||+.|||+++|+|++++|++++++.+.. ... ..+.|+|++.++.++
T Consensus 158 ~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~L~R~~~g~f~~~~a~~l~~l~~~~~~~~~~~~~~~l~~~l~p~~~~l~~l 237 (322)
T TIGR00425 158 FRVSCEAGTYIRKLCVDIGEALGTGAHMQELRRTRSGCFGEDDMVTLHDLLDAYVFWKEDGDESYLRRVIKPMEYALRHL 237 (322)
T ss_pred EEEEeCCCcChHHHHHHHHHHHCCCEEEEEeEeEEECCccccccccHHHHHHhhhhhhcccchhhHhhhcCCHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999997542 111 123699999999999
Q ss_pred ceeeecccccceeccCcccccc
Q psy1758 894 GIIYLSDLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 894 P~i~l~d~~~~~i~nG~~i~ls 915 (1527)
|.+.+++.....+.||+.+...
T Consensus 238 P~V~Vd~~~a~~I~NG~~I~~p 259 (322)
T TIGR00425 238 KRVVVKDSAVDAICHGADLMVR 259 (322)
T ss_pred CceEeCHHHHHHHHCCCccccc
Confidence 9999999999999999988653
No 58
>cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like. This group consists of eukaryotic and archeal pseudouridine synthases similar to human dyskerin, Saccharomyces cerevisiae Cbf5, and Drosophila melanogaster Mfl (minifly protein). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactor is required. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. D. melanogaster mfl hosts in its fourth intron, a box H/AC snoRNA gene. In addition dyskerin is likely to have a structural role in the telomerase complex. Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Mutations in Drosophila Mfl r
Probab=100.00 E-value=1.6e-52 Score=447.29 Aligned_cols=176 Identities=38% Similarity=0.633 Sum_probs=170.4
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCC
Q psy1758 663 HGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDI 742 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~ 742 (1527)
||||+||||.|||||||++++||.++.+||||+|||||+||||||+|+|++||+++|++..+|+|+++++||..
T Consensus 2 ~g~l~i~Kp~g~tS~~~v~~~k~~~~~kkvGH~GTLDp~A~GvLiv~~g~~Tk~~~~~~~~~K~Y~a~v~~g~~------ 75 (182)
T cd02572 2 YGVINLDKPSGPSSHEVVAWIKRILGVEKTGHSGTLDPKVTGCLPVCIDRATRLVKSQQEAGKEYVCVMRLHDD------ 75 (182)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhCCCccCcCCCCCCcCeeEEEEEECHHhhhhHHHhCCCCEEEEEEEECCc------
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred cccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--CeE
Q psy1758 743 EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PYL 820 (1527)
Q Consensus 743 ~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~~~ 820 (1527)
++.++|++++++|+|+++|+||+|||+| +++|+++||++++++|+. |.+
T Consensus 76 ------------it~e~l~~~l~~f~G~i~Q~pP~~SA~K-----------------~~~R~v~I~~i~l~~~~~~~~~~ 126 (182)
T cd02572 76 ------------VDEEKVRRVLEEFTGAIFQRPPLISAVK-----------------RQLRVRTIYESKLLEYDGERRLV 126 (182)
T ss_pred ------------CCHHHHHHHHHHCCCcEEeeCCHhheec-----------------CCceEEEEEEEEEEEEcCCCcEE
Confidence 6899999999999999999999999998 368999999999999988 999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCcc-ccccccChhHHHh
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKL-TLDKCLNIDTIIK 873 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f-~~~~a~~l~~l~~ 873 (1527)
+|+|+||+||||||||+|||.+|||+|||++|||+++|+| ++++|++++++.+
T Consensus 127 ~~~v~cs~GTYIRsL~~dlg~~Lg~~a~l~~L~R~~~G~f~~~~~~~~~~~~~~ 180 (182)
T cd02572 127 LFRVSCEAGTYIRTLCVHIGLLLGVGAHMQELRRTRSGPFSEEDNMVTLHDVLD 180 (182)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHCCCeEEEEEEeEEEcCcCchhccccHHHHHh
Confidence 9999999999999999999999999999999999999999 9999999999954
No 59
>PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. This entry represents pseudouridine synthase TruB, as well as Cbf5p that modifies rRNA [].; GO: 0006396 RNA processing; PDB: 1SGV_B 2AUS_C 3UAI_A 3U28_A 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=100.00 E-value=5.3e-49 Score=406.27 Aligned_cols=149 Identities=45% Similarity=0.750 Sum_probs=138.9
Q ss_pred HHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCcccEEeecCCCCCCHHHHHHH
Q psy1758 684 KYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKI 763 (1527)
Q Consensus 684 ~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~ 763 (1527)
||+++.+||||+|||||+||||||+|+|+|||+++||+..+|+|+++++||.+|||+|++|+|++++++.|++.++|+++
T Consensus 1 r~~~~~~KvGH~GTLDP~AsGvL~v~vg~~Tkl~~~l~~~~K~Y~~~~~lG~~TdT~D~~G~v~~~~~~~~it~e~l~~~ 80 (149)
T PF01509_consen 1 RRILGIKKVGHGGTLDPFASGVLVVGVGKATKLLSYLQNSDKEYVATIRLGVETDTYDIEGEVTETKPYDHITEEDLEKV 80 (149)
T ss_dssp HHHTTBSSEEESS-SSTT-EEEEEEEEGGGGGGHHHHTTSEEEEEEEEEESSEETTSBTTSSEEEE---TT--HHHHHHH
T ss_pred CcccCcceeccccccCCcceEEEEEEECCcchHHHHhhccCCEEEEEEEEEEEeCCcceeeeEEEeeccccCCHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEEEEEEecccccH
Q psy1758 764 LINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYI 832 (1527)
Q Consensus 764 l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~~~v~cs~gtYi 832 (1527)
|++|+|+++|.||+|||+|+||||||+|||+|+++|+++|+|+||+|++++|+.|.|+|+|+||+||||
T Consensus 81 l~~f~G~~~Q~pP~ySAvki~G~raY~lAR~G~~v~~~~r~v~I~~i~l~~~~~~~~~~~v~cs~GTYi 149 (149)
T PF01509_consen 81 LAKFQGEIEQVPPMYSAVKINGKRAYELARKGEEVELPPRPVTIYSIELLSFNPPEFTFEVHCSKGTYI 149 (149)
T ss_dssp HHHTSEEEEES-SSSSSSECTTCEHHHHHHTTSSTSSS-EEEEEEEEEEEEEETTEEEEEEEECTTTTH
T ss_pred HHhCcCCEeeeCchheeEcCCCccHHHHHHCCCccCCCCeeEEEEEEEEEEEcCCeEEEEEEEcCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
No 60
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-47 Score=429.11 Aligned_cols=362 Identities=24% Similarity=0.351 Sum_probs=310.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc------eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA------RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTP 993 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~------~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTP 993 (1527)
.+.|++|||.|||+|||||.+.||...|+|...+.+.. ...|+++.|++|||++.++...|+|+++.+||+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 56789999999999999999999998888877766653 578999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh-----
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL----- 1068 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l----- 1068 (1527)
||.||+..+.|.|..+|.||.|+||..|+.+||+.+++.|+..++|++-||||+|++..+|-+.++++.+.+.--
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876200
Q ss_pred -------------------------ccc-------------c------------cc-----------------------c
Q psy1758 1069 -------------------------CAT-------------E------------EQ-----------------------L 1075 (1527)
Q Consensus 1069 -------------------------~~~-------------~------------~~-----------------------~ 1075 (1527)
+.. . ++ -
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~ 249 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGE 249 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCC
Confidence 000 0 00 0
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC---------CCCCCceeEEEeeecc---ccCceEEEEEe
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD---------NSNNPLQLQIISLEYS---SYLGKIGIGRI 1143 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~---------~~~~p~~~~V~~~~~d---~~~G~v~~grV 1143 (1527)
-.||+++||+.+. |++.+|++++++.|+|.. ..+..|.++|||+..+ .+..|++|.||
T Consensus 250 ~TPVFFGSAl~NF----------GV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv 319 (528)
T COG4108 250 LTPVFFGSALGNF----------GVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRV 319 (528)
T ss_pred ccceEehhhhhcc----------CHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEe
Confidence 1589999999998 999999999999999963 2345699999998764 47889999999
Q ss_pred ecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCC
Q psy1758 1144 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEP 1223 (1527)
Q Consensus 1144 ~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P 1223 (1527)
.||....|+.+...++ | +..+++.-..|++.+|..+++|.|||||++..-..++||||++..+ ...+++++...|
T Consensus 320 ~SGkferGMkv~h~rt--G--K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~Ge-~l~f~giP~FaP 394 (528)
T COG4108 320 CSGKFERGMKVTHVRT--G--KDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEGE-KLKFTGIPNFAP 394 (528)
T ss_pred ccccccCCceeeeeec--C--CceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecCc-eeeecCCCCCCH
Confidence 9999999999999888 4 4678999999999999999999999999998877899999999874 445566665668
Q ss_pred ceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEe
Q psy1758 1224 TLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVS 1302 (1527)
Q Consensus 1224 ~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs 1302 (1527)
-+.+.+...+. +...++.++|.++++|- ++++-....... .+++..|.||.+|+.+||+.| |+|+.+.
T Consensus 395 E~frrvr~kd~---------~K~Kql~Kgl~QL~eEG-avQ~f~p~~~~d-~IlGAVG~LQFeV~~~RL~~EY~ve~~~e 463 (528)
T COG4108 395 ELFRRVRLKDP---------LKQKQLKKGLEQLAEEG-AVQVFKPLDGND-LILGAVGQLQFEVVQARLKNEYNVEAVFE 463 (528)
T ss_pred HHHHHHhcCCh---------HHHHHHHHHHHHHhhcC-eeEEEecCCCCC-ceEEeeeeeehHHHHHHHHhhhCCeEEEe
Confidence 88888876542 24578999999999885 677777666677 999999999999999999976 9988876
Q ss_pred cCeee
Q psy1758 1303 RPRVI 1307 (1527)
Q Consensus 1303 ~P~V~ 1307 (1527)
+-.+.
T Consensus 464 ~~~~~ 468 (528)
T COG4108 464 PVNFS 468 (528)
T ss_pred eccce
Confidence 54433
No 61
>KOG0468|consensus
Probab=100.00 E-value=1.6e-42 Score=405.09 Aligned_cols=467 Identities=24% Similarity=0.330 Sum_probs=365.6
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCc-ccccccccceecchhhhhcccceeEeeeeEEEEe-----cCeEEEEEe
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGT-FRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-----NGTRINIID 991 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~-~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-----~~~~iniiD 991 (1527)
.+..+|||+++||-.||||+|++.|..++.. +.+.....-++.|....|++||.+|.+....+.. +.+.+||+|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 4678999999999999999999999998763 2222222338999999999999999999888765 357899999
Q ss_pred CCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCC-------CC----hhhhHHH
Q psy1758 992 TPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN-------AR----PEWVVDA 1060 (1527)
Q Consensus 992 TPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~-------a~----~~~v~~~ 1060 (1527)
||||.+|..|+.++++.+|+|+||||+.+|++-+|+.+++.+-+..+|+.+|+||+|+.- .+ ...++++
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~ 283 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDE 283 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999731 11 1223333
Q ss_pred HHHHHhhhccccc----ccCCcEEEeccccCCcC---------------CCc----------------------------
Q psy1758 1061 TFDLFDKLCATEE----QLDFPVIYTSALHGYAN---------------ENS---------------------------- 1093 (1527)
Q Consensus 1061 ~~~~~~~l~~~~~----~~~~pvi~~SA~~g~~~---------------~~~---------------------------- 1093 (1527)
+..++......+. ++.--+++.|.+-|++- .+.
T Consensus 284 iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~ 363 (971)
T KOG0468|consen 284 INNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGS 363 (971)
T ss_pred hcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCCc
Confidence 3332222222111 11123566666666420 000
Q ss_pred -----------------------------------------ccccCCChh---------------HHHHHHhhcCCCC--
Q psy1758 1094 -----------------------------------------KARQGNMIP---------------LFEAILKYVPVHK-- 1115 (1527)
Q Consensus 1094 -----------------------------------------~~~~~gi~~---------------Ll~~i~~~lp~p~-- 1115 (1527)
++...++.+ +.+++.+++|+|.
T Consensus 364 ~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~v~hi~sP~e~ 443 (971)
T KOG0468|consen 364 GSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMPVEHIPSPREN 443 (971)
T ss_pred ccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhhhHhhHhhcCChhhh
Confidence 000112233 4456678888884
Q ss_pred -----------------------CCCCCCceeEEEeeec-cccCceEEEEEeecCccccCCEEEEecCCC-----CCcCc
Q psy1758 1116 -----------------------DNSNNPLQLQIISLEY-SSYLGKIGIGRILSGRIKSLQDVVIMNGPD-----DKPNK 1166 (1527)
Q Consensus 1116 -----------------------~~~~~p~~~~V~~~~~-d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~-----g~~~~ 1166 (1527)
+++++|+.+.+++++. ++..--.++|||+||+++.|+.|.+...+. +....
T Consensus 444 a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~ 523 (971)
T KOG0468|consen 444 AARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVI 523 (971)
T ss_pred hccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeeccccCCCccccee
Confidence 3567999999999875 444556789999999999999999986641 11122
Q ss_pred ceeeeEEEeecCceeEeeeeecCCEEEEecceecc-cCCeeeCCCCCC---CCCCCc-cCCCceeEEEEecCCCCCCCCC
Q psy1758 1167 AKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC-IGSTICDPSKPN---GLPMLN-IDEPTLTINFMVNNSPLAGREG 1241 (1527)
Q Consensus 1167 ~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~-iGdTi~~~~~~~---~l~~~~-~~~P~l~~~~~~~~~p~~g~e~ 1241 (1527)
..|+++..+.+..+.+++.|.||.+|.|.|++... ..-||++.+..+ -++++. +.+|++.+++. |+...|
T Consensus 524 ~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiave----P~nPsE- 598 (971)
T KOG0468|consen 524 CEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVE----PLNPSE- 598 (971)
T ss_pred eeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEec----cCChhh-
Confidence 56899999999999999999999999999998643 478888765443 344443 45788777775 444555
Q ss_pred ccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc--CcEEEEecCeeeEEEe--------
Q psy1758 1242 KFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE--GYELSVSRPRVIFKTL-------- 1311 (1527)
Q Consensus 1242 ~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre--g~ev~vs~P~V~yre~-------- 1311 (1527)
.+||.++|.+....-|.+...- +++|+ ..+.|-|||.|+.++..||.- .+|+.|+.|-|.|-|+
T Consensus 599 ----LPKmldgLrKinKsYPl~~tkV-EESGE-HvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssik 672 (971)
T KOG0468|consen 599 ----LPKMLDGLRKINKSYPLVITKV-EESGE-HVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIK 672 (971)
T ss_pred ----hhHHHHHHHhhcccCCcEEEeh-hhcCc-eEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchh
Confidence 4899999999999998775444 46788 899999999999999999963 8999999999999985
Q ss_pred ----------------------------c--------------------------------------c------------
Q psy1758 1312 ----------------------------N--------------------------------------G------------ 1313 (1527)
Q Consensus 1312 ----------------------------~--------------------------------------g------------ 1313 (1527)
+ |
T Consensus 673 cfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~e 752 (971)
T KOG0468|consen 673 CFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTE 752 (971)
T ss_pred hhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcCcch
Confidence 0 0
Q ss_pred ------------------------------------------------------------------------eEeeeeEE
Q psy1758 1314 ------------------------------------------------------------------------ELYEPYEN 1321 (1527)
Q Consensus 1314 ------------------------------------------------------------------------~llEP~~~ 1321 (1527)
.++||||.
T Consensus 753 vdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y~ 832 (971)
T KOG0468|consen 753 VDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYL 832 (971)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcCceEE
Confidence 48999999
Q ss_pred EEEEecCcchHHHHHHHhccCCeEeeeeec-CCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1322 LFVDIEEINQGIIMQKLNYRGGDLKNIEIN-EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1322 ~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~-~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|+|.+|.+.+..|.+.|++|||++..-.+. +.....+.+.+|+-+.+||-++||..|+|+|.+.+.|+||++++
T Consensus 833 VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~VP 907 (971)
T KOG0468|consen 833 VEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIVP 907 (971)
T ss_pred EEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcccCC
Confidence 999999999999999999999999887665 33467899999999999999999999999999999999999998
No 62
>KOG0467|consensus
Probab=100.00 E-value=1.8e-42 Score=413.47 Aligned_cols=467 Identities=25% Similarity=0.357 Sum_probs=368.6
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 996 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~ 996 (1527)
.+...+|||++++|+|||||||++.|+...|.+...-...-++||+.+.|+.||||+.++..+...+++.+|+||+|||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 34678999999999999999999999999998887655566999999999999999999999988899999999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC----CCChhhhH-------HHHHHHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS----NARPEWVV-------DATFDLF 1065 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~----~a~~~~v~-------~~~~~~~ 1065 (1527)
||.+++.++.+.+|+++++||+.+|+.+||..+++++-..|+.+++|+||||+. ...+.+.. +++....
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i 163 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVI 163 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999999999999963 22333332 3332222
Q ss_pred hh-------hcccc----------cccCCcEEEeccccCCcCC-----------------------------Cccc----
Q psy1758 1066 DK-------LCATE----------EQLDFPVIYTSALHGYANE-----------------------------NSKA---- 1095 (1527)
Q Consensus 1066 ~~-------l~~~~----------~~~~~pvi~~SA~~g~~~~-----------------------------~~~~---- 1095 (1527)
.. +.... .+-+--++++||..||+.- +...
T Consensus 164 ~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I~ 243 (887)
T KOG0467|consen 164 GQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRIC 243 (887)
T ss_pred HHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecchhhhhh
Confidence 21 11111 1112348999999998610 0000
Q ss_pred -------c--------------------cC-------------CC-------hhHHHH---------------HHhhcCC
Q psy1758 1096 -------R--------------------QG-------------NM-------IPLFEA---------------ILKYVPV 1113 (1527)
Q Consensus 1096 -------~--------------------~~-------------gi-------~~Ll~~---------------i~~~lp~ 1113 (1527)
. .. |+ ..+++. .+.++|.
T Consensus 244 ~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~im~~wLPls~avll~a~~~lp~ 323 (887)
T KOG0467|consen 244 EGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAIMSTWLPLSDAVLLTVVYKLPD 323 (887)
T ss_pred cccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHHHHHhhcccccchHHHHHHhcCC
Confidence 0 00 00 112222 2234454
Q ss_pred CC----------------------------CCCCCCceeEEEeeeccc-----cCceEEEEEeecCccccCCEEEEecCC
Q psy1758 1114 HK----------------------------DNSNNPLQLQIISLEYSS-----YLGKIGIGRILSGRIKSLQDVVIMNGP 1160 (1527)
Q Consensus 1114 p~----------------------------~~~~~p~~~~V~~~~~d~-----~~G~v~~grV~sG~lk~Gd~v~~~~~~ 1160 (1527)
|- ++.++|..++|.++..-+ ..--++++|||||+++.||.+++...
T Consensus 324 pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v~v~~p- 402 (887)
T KOG0467|consen 324 PIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVVYVLGP- 402 (887)
T ss_pred HHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeeccCceeeccEeeecCC-
Confidence 41 235678888888865443 22247999999999999999999866
Q ss_pred CCC----cCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCC-CCCCccCCCceeEEEEecCCC
Q psy1758 1161 DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNG-LPMLNIDEPTLTINFMVNNSP 1235 (1527)
Q Consensus 1161 ~g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~-l~~~~~~~P~l~~~~~~~~~p 1235 (1527)
++. ....+|.++|.++|...++.+++.+|++++|.|-+-+--.-|+|+.....| ++...-..|.+.|++.+.+ |
T Consensus 403 d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f~~tp~vrvaiep~~-p 481 (887)
T KOG0467|consen 403 DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNFQITPIVRVAIEPDD-P 481 (887)
T ss_pred CCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeeeeeeeEEEEEeecCC-h
Confidence 332 234689999999999999999999999999998333445788888643322 2312223688999987543 2
Q ss_pred CCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHh-cCcEEEEecCeeeEEEec--
Q psy1758 1236 LAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-EGYELSVSRPRVIFKTLN-- 1312 (1527)
Q Consensus 1236 ~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrr-eg~ev~vs~P~V~yre~~-- 1312 (1527)
+ ..++|.+.|.-+...||++++..+ +.++ +.+..-||+||+-++..|+. .++++.+++|.|+||||-
T Consensus 482 ---~-----em~~L~~glkll~~adp~v~i~v~-~~gE-hvl~~aGevhlerc~kDL~efa~i~i~vSeP~vpfrET~~e 551 (887)
T KOG0467|consen 482 ---D-----EMDKLVEGLKLLNQADPFVKIRVE-ENGE-HVLVTAGEVHLERCLKDLKEFAKIEISVSEPLVPFRETIIE 551 (887)
T ss_pred ---H-----HhHHHHHHHHhhcccchhhHHHHh-hccc-eeeeeccHHHHHHHHHHHhhhhceEEEecCCccchhhhccc
Confidence 2 357899999999999999998776 5688 89999999999999999987 499999999999999850
Q ss_pred --------------------------------------------------------------------------------
Q psy1758 1313 -------------------------------------------------------------------------------- 1312 (1527)
Q Consensus 1313 -------------------------------------------------------------------------------- 1312 (1527)
T Consensus 552 ~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~s~~~~ 631 (887)
T KOG0467|consen 552 DSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLISLERL 631 (887)
T ss_pred cchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccccccccccccHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy1758 1313 -------------------------------------------------------------------------------- 1312 (1527)
Q Consensus 1313 -------------------------------------------------------------------------------- 1312 (1527)
T Consensus 632 ~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~Ep~~g~~~~~ 711 (887)
T KOG0467|consen 632 YEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCNEPMQGICFVL 711 (887)
T ss_pred hhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCcccccCcccEEEEe
Confidence
Q ss_pred ---------------c-------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeec-CCcEEE
Q psy1758 1313 ---------------G-------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEIN-EKERVR 1357 (1527)
Q Consensus 1313 ---------------g-------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~-~~~~~~ 1357 (1527)
| .+..|||.+.|.+-.|+.|+|+.-|++|+|++++-+.. +.+...
T Consensus 712 es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem~EgT~~F~ 791 (887)
T KOG0467|consen 712 ESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEMKEGTGFFI 791 (887)
T ss_pred eccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhhhhCCCCcEE
Confidence 0 37889999999999999999999999999999976654 567889
Q ss_pred EEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1358 LEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1358 l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+++.+|+.|-+||..++|-.|+|.|+..+.|+||+-.+
T Consensus 792 V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId 829 (887)
T KOG0467|consen 792 VTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVID 829 (887)
T ss_pred EEEEeeeeccccHHHHHhhccccccchhhhccccEEec
Confidence 99999999999999999999999999999999999876
No 63
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-37 Score=355.84 Aligned_cols=283 Identities=29% Similarity=0.358 Sum_probs=240.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccc---------------cccccceecchhhhhcccceeEeeeeEEEEecCe
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRK---------------NQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~---------------~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 985 (1527)
...|++++||+|||||||+.+|+++.|.+++ ..+.-+|+||+.+.|||||+|++.+...|+.+.+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 4569999999999999999999999998874 1123359999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-------CChhHHHHHHHHHHcCCccE-EEEeccCCCCCC---h
Q psy1758 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFKPI-VVVNKIDRSNAR---P 1054 (1527)
Q Consensus 986 ~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-------~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a~---~ 1054 (1527)
.++|+|||||.||..+|..+.++||++||||||..| +..||++|+-+++.+|+..+ |++||||..+++ +
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf 165 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERF 165 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHH
Confidence 999999999999999999999999999999999998 88999999999999999875 559999999875 5
Q ss_pred hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCc--ccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeecc
Q psy1758 1055 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENS--KARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYS 1132 (1527)
Q Consensus 1055 ~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~--~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d 1132 (1527)
+++.+++..++..++.... ++|++++||.+|.+.... ..++..-..||++|- .+..|....+.||++.|.+++.-
T Consensus 166 ~ei~~~v~~l~k~~G~~~~--~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~~d~Plr~pI~~v~~i 242 (428)
T COG5256 166 EEIVSEVSKLLKMVGYNPK--DVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERPLDKPLRLPIQDVYSI 242 (428)
T ss_pred HHHHHHHHHHHHHcCCCcc--CCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCCCCCCCeEeEeeeEEEe
Confidence 6777777775555555443 688999999999743221 123445567888885 88888888999999999999988
Q ss_pred ccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE--Eecc--eecccCCeeeC
Q psy1758 1133 SYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL--ITGI--EEICIGSTICD 1208 (1527)
Q Consensus 1133 ~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva--i~gl--~~~~iGdTi~~ 1208 (1527)
...|.+..|||.+|.|++||.|++.+. + ....|+++... ..+++.|.|||.|. +.|+ +|++.||.+++
T Consensus 243 ~~~gtv~vGrVEsG~i~~g~~v~~~p~--~--~~~evksie~~----~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~ 314 (428)
T COG5256 243 SGIGTVPVGRVESGVIKPGQKVTFMPA--G--VVGEVKSIEMH----HEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGH 314 (428)
T ss_pred cCCceEEEEEEeeeeeccCCEEEEecC--c--ceEEEeeeeec----ccccccCCCCCeEEEEecCCchhccCCccEecc
Confidence 889999999999999999999999987 2 45678887655 57899999999995 4565 46999999999
Q ss_pred CCCCCC
Q psy1758 1209 PSKPNG 1214 (1527)
Q Consensus 1209 ~~~~~~ 1214 (1527)
+++|..
T Consensus 315 ~~n~~t 320 (428)
T COG5256 315 SDNPPT 320 (428)
T ss_pred CCCCcc
Confidence 888744
No 64
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1e-36 Score=370.06 Aligned_cols=283 Identities=28% Similarity=0.411 Sum_probs=230.3
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
....+||+++||+|||||||+++|++..+...+......+.+|.++.|++||+|+++....+.+++++++|||||||.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 34568999999999999999999996543321111112247999999999999999998888888999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCC--hhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..++.++++.+|+++||||+.+|+++||++++..+..+|+|. |+|+||+|+.+.. .+.+.+++.+.+...+... -
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~--~ 166 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG--D 166 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc--C
Confidence 999999999999999999999999999999999999999995 6789999986421 2233445666554443321 1
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEE
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 1155 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~ 1155 (1527)
.+|++++||++|....+ ....++..|++.+.+++|.|..+.++||+|+|++++++++.|.+++|||.+|+|++||+|+
T Consensus 167 ~~~ii~vSa~~g~~~~~--~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~ 244 (394)
T PRK12736 167 DIPVIRGSALKALEGDP--KWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVE 244 (394)
T ss_pred CccEEEeeccccccCCC--cchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEE
Confidence 46899999999842211 1113678999999999998888888999999999999999999999999999999999999
Q ss_pred EecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCeeeCCCC
Q psy1758 1156 IMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTICDPSK 1211 (1527)
Q Consensus 1156 ~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi~~~~~ 1211 (1527)
+++. +.....+|.+|+.+ +.++++|.|||+|++ .|++ ++..||+||+++.
T Consensus 245 i~p~--~~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~ 298 (394)
T PRK12736 245 IVGI--KETQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGS 298 (394)
T ss_pred EecC--CCCeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEecCCC
Confidence 9876 22345789998765 468999999999965 6764 6889999998763
No 65
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.6e-36 Score=370.02 Aligned_cols=285 Identities=27% Similarity=0.378 Sum_probs=233.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
....+||+++||+|||||||+++|++..+.+..........+|..+.|++||+|+++....+.+++.+++|+|||||.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 34568999999999999999999999877665333323357899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC--hhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..++.+++..+|++++||||.+|+++||++++..+..+++| .|+|+||+|+.+.. .+...+++...+...+... -
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~--~ 166 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG--D 166 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC--C
Confidence 99999999999999999999999999999999999999999 55789999997532 2334456666555443322 2
Q ss_pred CCcEEEeccccCCcCCCccc-------c-cCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCc
Q psy1758 1076 DFPVIYTSALHGYANENSKA-------R-QGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~-------~-~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~ 1147 (1527)
.+|++++||++|++..+... . ..++..|+++|.+.+|+|..+.+.||+|+|++++++++.|++++|||++|+
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~ 246 (409)
T CHL00071 167 DIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGT 246 (409)
T ss_pred cceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCE
Confidence 47999999999975322111 0 114678999999989988888889999999999999999999999999999
Q ss_pred cccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cce--ecccCCeeeCCCC
Q psy1758 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIE--EICIGSTICDPSK 1211 (1527)
Q Consensus 1148 lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl~--~~~iGdTi~~~~~ 1211 (1527)
+++||.|.+++.+ .....+|.+|+.+. .++++|.|||+|+++ +++ ++..||+|++++.
T Consensus 247 l~~Gd~v~i~p~~--~~~~~~VksI~~~~----~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~ 308 (409)
T CHL00071 247 VKVGDTVEIVGLR--ETKTTTVTGLEMFQ----KTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGT 308 (409)
T ss_pred EeeCCEEEEeeCC--CCcEEEEEEEEEcC----cCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCC
Confidence 9999999987651 12457899987653 478999999999654 654 6889999998763
No 66
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.4e-36 Score=371.88 Aligned_cols=280 Identities=27% Similarity=0.338 Sum_probs=232.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccc--c-------------ccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ--N-------------INARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~--~-------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
...+||+++||+|||||||+++|++.+|.+.+.+ . ..+++||..+.|++||+|++.....++|++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3458999999999999999999999998776543 1 114789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCcc-EEEEeccCCC-----C
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFKP-IVVVNKIDRS-----N 1051 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~-------~qt~~~~~~~~~~glp~-IvviNKiD~~-----~ 1051 (1527)
+.++|+|||||.||..++..+++.+|++||||||.+|.+ +||+++|..+..+|+|. |+|+||||+. .
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 999999999999999999999999999999999999843 79999999999999986 6679999987 3
Q ss_pred CChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEee
Q psy1758 1052 ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISL 1129 (1527)
Q Consensus 1052 a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~ 1129 (1527)
++++++.+++++.+...+... ..+|++++||++|.+..+... .+..-..|+++| +.+++|..+.+.||+++|.++
T Consensus 165 ~~~~~i~~ei~~~l~~~g~~~--~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l-~~i~~p~~~~~~plr~~I~~v 241 (447)
T PLN00043 165 ARYDEIVKEVSSYLKKVGYNP--DKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEAL-DQINEPKRPSDKPLRLPLQDV 241 (447)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ccceEEEEeccccccccccccCCcccchHHHHHHH-hhcCCCccccCCCcEEEEEEE
Confidence 456777888888777665432 246899999999974332111 111113577777 457778777889999999999
Q ss_pred eccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCe
Q psy1758 1130 EYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGST 1205 (1527)
Q Consensus 1130 ~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdT 1205 (1527)
+..++.|+++.|||.+|+|++||.|.+.|. + ...+|.+|..+ ..++++|.|||.|++ .++ .++..|+.
T Consensus 242 ~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~--~--~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~~~~~~i~rG~v 313 (447)
T PLN00043 242 YKIGGIGTVPVGRVETGVIKPGMVVTFGPT--G--LTTEVKSVEMH----HESLQEALPGDNVGFNVKNVAVKDLKRGYV 313 (447)
T ss_pred EEeCCcEEEEEEEEECCEEeeCCEEEEcCC--C--CEEEEEEEEEC----CeEeCEecCCCeEEEEECCCCHhhCCCccE
Confidence 999999999999999999999999999876 3 35789888765 478999999999976 455 46888999
Q ss_pred eeCCC
Q psy1758 1206 ICDPS 1210 (1527)
Q Consensus 1206 i~~~~ 1210 (1527)
||+..
T Consensus 314 l~~~~ 318 (447)
T PLN00043 314 ASNSK 318 (447)
T ss_pred EccCC
Confidence 99864
No 67
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2.4e-36 Score=370.07 Aligned_cols=279 Identities=26% Similarity=0.328 Sum_probs=231.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEecCe
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNGT 985 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 985 (1527)
...||+++||+|||||||+++|++.+|.+.+.+ +..++++|..+.|++||+|++.....++|+++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 457999999999999999999999988876533 11136899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCcc-EEEEeccCCCC-----C
Q psy1758 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFKP-IVVVNKIDRSN-----A 1052 (1527)
Q Consensus 986 ~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~-------~qt~~~~~~~~~~glp~-IvviNKiD~~~-----a 1052 (1527)
.++|+|||||.+|..++.++++.+|++||||||.+|++ +||+++|..+..+|+|. |||+||||++. +
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~ 165 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQE 165 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHH
Confidence 99999999999999999999999999999999999984 79999999999999997 57899999643 4
Q ss_pred ChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeee
Q psy1758 1053 RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE 1130 (1527)
Q Consensus 1053 ~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~ 1130 (1527)
+++++.+++.+.|..++... ..+|++++||++|.+..+... .+..-..|+++| +.+++|..+.+.||+++|.+++
T Consensus 166 ~~~~i~~~i~~~l~~~g~~~--~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l-~~~~~~~~~~~~p~r~~I~~v~ 242 (446)
T PTZ00141 166 RYDEIKKEVSAYLKKVGYNP--EKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEAL-DTLEPPKRPVDKPLRLPLQDVY 242 (446)
T ss_pred HHHHHHHHHHHHHHhcCCCc--ccceEEEeecccCCCcccCCCCCcccchHHHHHHH-hCCCCCCcCCCCCeEEEEEEEE
Confidence 57778888888776655432 258999999999974322111 111113588887 4566677777899999999999
Q ss_pred ccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cc--eecccCCee
Q psy1758 1131 YSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTI 1206 (1527)
Q Consensus 1131 ~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~iGdTi 1206 (1527)
..++.|+++.|+|.+|+|++||+|.++|. + ...+|.+|..+. .++++|.|||.|++. ++ .++..||+|
T Consensus 243 ~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl 314 (446)
T PTZ00141 243 KIGGIGTVPVGRVETGILKPGMVVTFAPS--G--VTTEVKSVEMHH----EQLAEAVPGDNVGFNVKNVSVKDIKRGYVA 314 (446)
T ss_pred ecCCceEEEEEEEEcceEecCCEEEEccC--C--cEEEEEEEEecC----cccCEECCCCEEEEEECCCCHHHcCCceEE
Confidence 99999999999999999999999999976 3 457888887663 689999999999764 54 358889999
Q ss_pred eCCC
Q psy1758 1207 CDPS 1210 (1527)
Q Consensus 1207 ~~~~ 1210 (1527)
|+++
T Consensus 315 ~~~~ 318 (446)
T PTZ00141 315 SDSK 318 (446)
T ss_pred ecCC
Confidence 9864
No 68
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=4.5e-36 Score=365.13 Aligned_cols=281 Identities=28% Similarity=0.386 Sum_probs=227.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+..+||+++||+|||||||+++|++......+......+.||..+.|++||+|++.....+++++++++|||||||.+|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 45689999999999999999999865322211111123579999999999999999999888889999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.++.+++..+|+++|||||.+|+++||++++..+..+++|.+ +|+||||+.+.. .+.+.+++.+.+...+.. ...
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~--~~~ 167 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP--GDD 167 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC--ccC
Confidence 999999999999999999999999999999999999999987 579999986532 222334555555443321 124
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
+|++++||++|....+ ....++..|++++.+.+|+|..+.++||+++|++++++++.|.+++|||.+|+|++||.|.+
T Consensus 168 ~~ii~vSa~~g~~g~~--~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i 245 (394)
T TIGR00485 168 TPIIRGSALKALEGDA--EWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEI 245 (394)
T ss_pred ccEEECccccccccCC--chhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEE
Confidence 7999999999863222 11225678999998888888888889999999999999999999999999999999999999
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCeeeCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPS 1210 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdTi~~~~ 1210 (1527)
++. ++....+|.+|+.+ +.++++|.|||+|++ .|+ +++..||+||+++
T Consensus 246 ~p~--~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 246 VGL--KDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred ecC--CCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 875 12245789998865 468899999999966 666 4688999999974
No 69
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=8.5e-36 Score=362.27 Aligned_cols=284 Identities=27% Similarity=0.393 Sum_probs=230.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....||+++||+|||||||+++|++......+......+.+|..+.|++||+|++.....+.+++.+++|+|||||.+|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 45689999999999999999999975432221111122578999999999999999999998899999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.++.+++..+|+++|||||.+|+++||++++..+...++|.+ +|+||+|+.+.. .+.+.+++...+...+... ..
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~--~~ 167 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG--DD 167 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc--Cc
Confidence 999999999999999999999999999999999999999987 479999996421 2333345555554433211 24
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
+|++++||++|++.........++..|+++|.+.+|+|..+.++||+++|.++++.++.|.++.|||.+|+|++||+|.+
T Consensus 168 ~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i 247 (396)
T PRK12735 168 TPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEI 247 (396)
T ss_pred eeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEE
Confidence 78999999999753211111236789999999999988888889999999999999999999999999999999999999
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCeeeCCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdTi~~~~~ 1211 (1527)
+|. +.....+|.+|+.+ +.++++|.|||+|++ .|+ +++..|++||+++.
T Consensus 248 ~p~--~~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~ 300 (396)
T PRK12735 248 VGI--KETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGS 300 (396)
T ss_pred ecC--CCCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCC
Confidence 976 22345788888764 478999999999977 566 46889999999753
No 70
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.7e-35 Score=359.42 Aligned_cols=283 Identities=28% Similarity=0.392 Sum_probs=230.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
...+||+++||+|||||||+++|++.............+.||..+.|++||+|+++....+.+++++++|+|||||.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 45689999999999999999999975322111111122478999999999999999998888899999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.++.+++..+|++++||||.+|+++||++++..+...++|.+ +++||+|+.+.. ++.+.+++...+..++.. .-.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~--~~~ 167 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP--GDD 167 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC--ccC
Confidence 999999999999999999999999999999999999999986 579999996421 233445666666544432 125
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
.|++++||++|+..........|+..|+++|.+.+|+|....++||+|+|.++++.++.|.++.|+|.+|++++||+|.+
T Consensus 168 ~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i 247 (396)
T PRK00049 168 TPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 247 (396)
T ss_pred CcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEE
Confidence 78999999998642111111236789999999999988888889999999999999999999999999999999999999
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCeeeCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPS 1210 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdTi~~~~ 1210 (1527)
++.+ .....+|.+|..+ +.++++|.|||.|++ .|+ +++..|++||+++
T Consensus 248 ~p~~--~~~~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 248 VGIR--DTQKTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred eecC--CCceEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 8762 1345789988765 368999999999976 666 4688999999975
No 71
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.5e-35 Score=363.49 Aligned_cols=285 Identities=26% Similarity=0.380 Sum_probs=233.7
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
....+||+++||+|||||||+++|++..+.+..........+|..+.|++||+|++.....+++++++++|||||||.+|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45679999999999999999999999877665433222357899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCC--hhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..++.++++.+|+++|||||.+|+++||+++|..+..+|+|. |+|+||||+.+.. ++.+.+++...+...+.. ..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~--~~ 235 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP--GD 235 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC--cC
Confidence 999999999999999999999999999999999999999994 6789999996521 333444566655544322 13
Q ss_pred CCcEEEeccccCCcCCCcc---c----cc-CCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCc
Q psy1758 1076 DFPVIYTSALHGYANENSK---A----RQ-GNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~---~----~~-~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~ 1147 (1527)
.+|++++||.+|+...... . .+ .++..|++.|.+..|.|..+.+.||+++|.++++.++.|.++.|+|.+|+
T Consensus 236 ~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~ 315 (478)
T PLN03126 236 DIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGT 315 (478)
T ss_pred cceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCe
Confidence 5799999999996322000 0 00 13567999998888778777889999999999999999999999999999
Q ss_pred cccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCeeeCCCC
Q psy1758 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTICDPSK 1211 (1527)
Q Consensus 1148 lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi~~~~~ 1211 (1527)
|++||.|.++|. +.....+|.+|+.+ +.++++|.|||.|++ .|++ ++..|++||+++.
T Consensus 316 i~~Gd~v~i~p~--~~~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~ 377 (478)
T PLN03126 316 VKVGETVDIVGL--RETRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGS 377 (478)
T ss_pred EecCCEEEEecC--CCceEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecCCC
Confidence 999999999876 33345788888765 368999999999976 5654 5888999999753
No 72
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=5.9e-35 Score=357.03 Aligned_cols=286 Identities=27% Similarity=0.394 Sum_probs=226.7
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
....+||+++||+|||||||+++|++......+........+|..+.|++||+|+++....+++++++++|+|||||.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 45678999999999999999999974321111111111126899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCC--hhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..++.+++..+|+++|||||.+|+++||++++..+...++|. |+++||+|+.+.. .+.+.+++.+.+..++.. ..
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~--~~ 215 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP--GD 215 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC--CC
Confidence 999999999999999999999999999999999999999996 6789999996421 122223444444333321 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEE
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 1155 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~ 1155 (1527)
.+|++++||+++....+......++..|++++.+.+|.|..+.++||+|+|.++++.++.|.++.|+|.+|+|++||.|.
T Consensus 216 ~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~ 295 (447)
T PLN03127 216 EIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVE 295 (447)
T ss_pred cceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEE
Confidence 47899999986543333222233578999999999998888888999999999999999999999999999999999999
Q ss_pred EecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCeeeCCC
Q psy1758 1156 IMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTICDPS 1210 (1527)
Q Consensus 1156 ~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi~~~~ 1210 (1527)
+++.+.+.....+|.+|..+. .++++|.|||.|++ .|++ ++..||+||++.
T Consensus 296 i~p~~~~g~~~~~VksI~~~~----~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~ 350 (447)
T PLN03127 296 IVGLRPGGPLKTTVTGVEMFK----KILDQGQAGDNVGLLLRGLKREDVQRGQVICKPG 350 (447)
T ss_pred EcccCCCCcEEEEEEEEEEEC----cEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCC
Confidence 986521113457899998763 57899999999976 5664 688999999874
No 73
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.2e-34 Score=353.00 Aligned_cols=278 Identities=24% Similarity=0.282 Sum_probs=217.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCccccc------------c-----cccceecchhhhhcccceeEeeeeEEEEecCeE
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------Q-----NINARIMDSNEIEKERGITIFSKNCSIEYNGTR 986 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~-----~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 986 (1527)
+|+++||+|||||||+++||+.+|.+.+. + +..+|+||..+.|++||+|++.....+.|++++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 79999999999999999999999987652 1 122579999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCChhhhHHHHHHHH
Q psy1758 987 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARPEWVVDATFDLF 1065 (1527)
Q Consensus 987 iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~~~~v~~~~~~~~ 1065 (1527)
++|||||||.+|..++..++..+|++||||||.+|+++||++++..+..+++|. |+|+||||+.+++ ++.++++.+.+
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~~ 160 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKDY 160 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875 6689999997654 23344444433
Q ss_pred hhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEe
Q psy1758 1066 DKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRI 1143 (1527)
Q Consensus 1066 ~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV 1143 (1527)
..+........+|++++||++|.+..+... .+.....|++.+ +.++.|....+.||+++|..++...+.+.-..|+|
T Consensus 161 ~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v 239 (406)
T TIGR02034 161 LAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEIL-ETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTI 239 (406)
T ss_pred HHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHH-HhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEE
Confidence 222111111246899999999974332111 111123466665 55677777778999999988764333233367999
Q ss_pred ecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEec--ceecccCCeeeCCCC
Q psy1758 1144 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG--IEEICIGSTICDPSK 1211 (1527)
Q Consensus 1144 ~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~g--l~~~~iGdTi~~~~~ 1211 (1527)
.+|+|++||+|.++|. + ...+|.+|+.+. .++++|.|||.|++.. .+++..||+||+++.
T Consensus 240 ~~G~l~~gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 240 ASGSVHVGDEVVVLPS--G--RSSRVARIVTFD----GDLEQARAGQAVTLTLDDEIDISRGDLLAAADS 301 (406)
T ss_pred ecceeecCCEEEEeCC--C--cEEEEEEEEECC----cccCEeCCCCEEEEEECCccccCCccEEEcCCC
Confidence 9999999999999986 3 457899998663 4789999999998764 346888999999865
No 74
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.1e-34 Score=357.05 Aligned_cols=281 Identities=29% Similarity=0.374 Sum_probs=229.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccc------------cc---ccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------QN---INARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~~---~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
....||+++||+|||||||+++|++..|.+... +. ..+++||..+.|++||+|++.....+++++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 456899999999999999999999998887643 21 124789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCC--CCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC---hhhhH
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE--GPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR---PEWVV 1058 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~--G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~---~~~v~ 1058 (1527)
++++|||||||.+|..++.++++.+|++|+|||+++ ++.+|++.++..+..+++| +++|+||+|+.+.+ ++...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999975 67899999997643 23445
Q ss_pred HHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCc
Q psy1758 1059 DATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLG 1136 (1527)
Q Consensus 1059 ~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G 1136 (1527)
+++.+.+...+... ..+|++++||++|.+..+... .+.....|+++| +.+|+|..+.+.||+++|.++++.++.|
T Consensus 164 ~~i~~~l~~~g~~~--~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l-~~~~~~~~~~~~p~r~~i~~~~~~~g~G 240 (425)
T PRK12317 164 EEVSKLLKMVGYKP--DDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEAL-DNLKPPEKPTDKPLRIPIQDVYSISGVG 240 (425)
T ss_pred HHHHHHHHhhCCCc--CcceEEEeecccCCCccccccCCCcccHHHHHHHH-hcCCCCccccCCCcEEEEEEEEeeCCCe
Confidence 56655554433221 136899999999984332211 111123578876 5678887778899999999999999999
Q ss_pred eEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCeeeCCCC
Q psy1758 1137 KIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTICDPSK 1211 (1527)
Q Consensus 1137 ~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi~~~~~ 1211 (1527)
+++.|+|.+|+|++||.|.++|. + ...+|.+|..+ ..+++.|.|||.|++ .+++ ++..||+||++++
T Consensus 241 ~vv~G~v~~G~v~~Gd~v~i~P~--~--~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 241 TVPVGRVETGVLKVGDKVVFMPA--G--VVGEVKSIEMH----HEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDN 311 (425)
T ss_pred EEEEEEEeeccEecCCEEEECCC--C--CeEEEEEEEEC----CcccCEECCCCeEEEEECCCCHHHccCccEecCCCC
Confidence 99999999999999999999987 2 35789998765 368999999999976 4553 6788999998754
No 75
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-35 Score=315.31 Aligned_cols=285 Identities=27% Similarity=0.383 Sum_probs=228.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
...-||+.|||+|||||||+.+++.............-.-.|..+.|++|||||..+...++..++.+-.+|+|||+||.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 34579999999999999999999754221111111111234788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCCCC-C-hhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNA-R-PEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a-~-~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.+|..+..+.|++||||+|++|++|||++|+.++++.|+|.| +|+||+|+.+. + .+.+..++++++...+.. ..+
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~--gd~ 167 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP--GDD 167 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC--CCC
Confidence 999999999999999999999999999999999999999875 56899999763 2 456677788888765543 235
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
.|++..||+........ ....+.+|++++-+++|.|..+.+.||.|+|-+++.-...|.+++|||.+|+|++|+.+.+
T Consensus 168 ~Pii~gSal~ale~~~~--~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~evei 245 (394)
T COG0050 168 TPIIRGSALKALEGDAK--WEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEI 245 (394)
T ss_pred cceeechhhhhhcCCcc--hHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEE
Confidence 79999999865321111 1224679999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCeeeCCCCCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSKPNG 1214 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdTi~~~~~~~~ 1214 (1527)
..- ....+..++.+..| +...+++.|||-|.+ .|. +++..|..|+.+..-.|
T Consensus 246 vG~--~~~~kttvtgvemf----rk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~p 301 (394)
T COG0050 246 VGI--KETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKP 301 (394)
T ss_pred ecc--cccceeEEEhHHHH----HHHHhccccCCCcceEEEeccccceecceEeecCCcccc
Confidence 755 22334556665555 467899999999854 554 47888999998865433
No 76
>KOG0460|consensus
Probab=100.00 E-value=3.1e-35 Score=323.85 Aligned_cols=290 Identities=27% Similarity=0.359 Sum_probs=234.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
..-||+-|||+|||||||..+++.--.......+..-.-.|..++|+.|||||.+....++...+.+--+|+|||+||.+
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 34699999999999999999997641111000011112348899999999999998887777889999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCC-CCC-hhhhHHHHHHHHhhhcccccccCC
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRS-NAR-PEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~-~a~-~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
+|..+.++.|++||||.|++|+||||++|+-+|++-|++.| ||+||.|.. +++ .+-+.-++++++.+.+... -+.
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G--d~~ 210 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG--DNT 210 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC--CCC
Confidence 99999999999999999999999999999999999999986 559999997 333 3455567788877666443 357
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEe
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~ 1157 (1527)
|++..||+.-....+.+--...+..|++++-+++|.|..+.+.||.+.|-+++..++.|.++.||+.+|+|++||++.+.
T Consensus 211 PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eiv 290 (449)
T KOG0460|consen 211 PVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIV 290 (449)
T ss_pred CeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEe
Confidence 99999998764332332222246789999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE--Eecce--ecccCCeeeCCCCCCCCCCC
Q psy1758 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL--ITGIE--EICIGSTICDPSKPNGLPML 1218 (1527)
Q Consensus 1158 ~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva--i~gl~--~~~iGdTi~~~~~~~~l~~~ 1218 (1527)
.. ++..+..|+.|..|. ..+++|.|||-+. +.|++ +++.|..+|.+....+...+
T Consensus 291 G~--~~~lkttvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~k~ 349 (449)
T KOG0460|consen 291 GH--NKTLKTTVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHNKF 349 (449)
T ss_pred cc--CcceeeEeehHHHHH----HHHHhcccccceehhhhcCCHHHHhcccEEecCCccccccee
Confidence 65 444567788887774 6799999999985 36664 78999999998875554333
No 77
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.7e-33 Score=347.52 Aligned_cols=283 Identities=24% Similarity=0.292 Sum_probs=220.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccc------------cccc-----cceecchhhhhcccceeEeeeeEEEEe
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRK------------NQNI-----NARIMDSNEIEKERGITIFSKNCSIEY 982 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~------------~~~~-----~~~~~D~~~~E~erGiTi~~~~~~~~~ 982 (1527)
....||+|+||+|||||||+++||+.+|.+.+ .+.. ..|+||..+.|++||+|++.....+.|
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34579999999999999999999999988765 2221 247999999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCChhhhHHHH
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNARPEWVVDAT 1061 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~~~~v~~~~ 1061 (1527)
++++++|||||||.+|..++..++..+|+++|||||.+|+++||++++..+..++++ .|+|+||||+.+++ ++.++++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~-~~~~~~i 183 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EEVFERI 183 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch-hHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999975 56789999997654 2333444
Q ss_pred HHHHhhhccccc-ccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceE
Q psy1758 1062 FDLFDKLCATEE-QLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKI 1138 (1527)
Q Consensus 1062 ~~~~~~l~~~~~-~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v 1138 (1527)
.+.+..+..... ....|++++||++|.+..+... .+.....|++ +++.+|+|..+.+.||+++|..++...+..+.
T Consensus 184 ~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~-~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g 262 (474)
T PRK05124 184 REDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLE-VLETVDIQRVVDAQPFRFPVQYVNRPNLDFRG 262 (474)
T ss_pred HHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHH-HHhhcCCCCCCCCCCceeeEEEEEecCCcccc
Confidence 433322111100 1246899999999985433211 1111235666 45778888777889999999887654332233
Q ss_pred EEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEec--ceecccCCeeeCCCCC
Q psy1758 1139 GIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG--IEEICIGSTICDPSKP 1212 (1527)
Q Consensus 1139 ~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~g--l~~~~iGdTi~~~~~~ 1212 (1527)
..|+|.+|+|++||+|.++|. + ...+|.+|+.+. .++++|.|||.|++.. ..++..||+||+++.+
T Consensus 263 ~~G~V~sG~l~~Gd~v~i~P~--~--~~~~VksI~~~~----~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~~~~ 330 (474)
T PRK05124 263 YAGTLASGVVKVGDRVKVLPS--G--KESNVARIVTFD----GDLEEAFAGEAITLVLEDEIDISRGDLLVAADEA 330 (474)
T ss_pred eEEEEEeEEEecCCEEEEecC--C--ceEEEEEEEEcC----ccccCcCCCCEEEEEeCCccccCCccEEECCCCC
Confidence 579999999999999999987 3 457899998664 3689999999998764 3468889999997643
No 78
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=2.2e-33 Score=345.57 Aligned_cols=281 Identities=27% Similarity=0.364 Sum_probs=226.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
...+||+++||+|||||||+++|++.+|.+.+.. +...+++|..+.|++||+|++.....+.+++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 4568999999999999999999999888765321 1124689999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC---CChhHHHHHHHHHHcCCc-cEEEEeccCCCCCCh---hhh
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG---PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNARP---EWV 1057 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G---~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~~---~~v 1057 (1527)
+.++|||||||.+|...+..+++.+|+++||||++++ ..+|+..++..+...+++ +|+|+||+|+.+.+. +..
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~ 164 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAI 164 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHH
Confidence 9999999999999999999999999999999999999 888999988888888865 667899999975433 334
Q ss_pred HHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccC
Q psy1758 1058 VDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYL 1135 (1527)
Q Consensus 1058 ~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~ 1135 (1527)
.+++.+.+...+.. ...+|++++||++|.+..+... .+.....|+++| +.+++|..+.+.||+++|.++++.++.
T Consensus 165 ~~ei~~~~~~~g~~--~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~g~ 241 (426)
T TIGR00483 165 KKEVSNLIKKVGYN--PDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEAL-DALEPPEKPTDKPLRIPIQDVYSITGV 241 (426)
T ss_pred HHHHHHHHHHcCCC--cccceEEEeeccccccccccccCCccccchHHHHHH-hcCCCCCCccCCCcEEEEEEEEecCCC
Confidence 45555555443321 1246899999999984332111 111123688888 457777777889999999999999999
Q ss_pred ceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCeeeCCCC
Q psy1758 1136 GKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1136 G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdTi~~~~~ 1211 (1527)
|+++.|+|.+|+|++||.|.+.|. + ...+|.+|+.+. .++++|.|||+|++ .++ +++..||+|++++.
T Consensus 242 G~vv~G~v~~G~i~~gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 242 GTVPVGRVETGVLKPGDKVVFEPA--G--VSGEVKSIEMHH----EQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred eEEEEEEEccceeecCCEEEECCC--C--cEEEEEEEEECC----cccCEEcCCCEEEEEECCCChhhcccceEEecCCC
Confidence 999999999999999999999876 3 457899988663 57899999999976 555 36889999998754
No 79
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=8.8e-33 Score=352.76 Aligned_cols=426 Identities=22% Similarity=0.267 Sum_probs=304.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+.++|+|+||+|||||||+++|.... +. ....+|+|.......+.|+++.++|||||||.+|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~--v~--------------~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN--VA--------------AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT 351 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--cc--------------ccccCceeeeccEEEEEECCEEEEEEECCCCccch
Confidence 355799999999999999999996421 11 11247899998888999999999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..+.++++.+|++|||||+.+|+++||.++|..+...++|+|||+||||+++++++.+..++... .+.......++|+
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~--~~~~e~~g~~vp~ 429 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY--GLVPEEWGGDTIF 429 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh--cccHHHhCCCceE
Confidence 99999999999999999999999999999999999999999999999999888777776665431 1111112234789
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhc--CCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEe
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYV--PVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l--p~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~ 1157 (1527)
+++||++|. |+++|+++|.... ..+..+++.|++++|+++..+++.|.+++++|++|+|++||.|.+.
T Consensus 430 vpvSAktG~----------GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g 499 (787)
T PRK05306 430 VPVSAKTGE----------GIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAG 499 (787)
T ss_pred EEEeCCCCC----------CchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEEC
Confidence 999999998 9999999987432 2345567889999999999999999999999999999999999874
Q ss_pred cCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec-ccCCeeeCCCCC------------------------
Q psy1758 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSKP------------------------ 1212 (1527)
Q Consensus 1158 ~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~iGdTi~~~~~~------------------------ 1212 (1527)
+ +.++|+.+.+.+..++++|.|||+|.|.|++++ .+||||+...+.
T Consensus 500 ~---------~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~ 570 (787)
T PRK05306 500 T---------TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQR 570 (787)
T ss_pred C---------cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 2 245555666666678999999999999999998 899999843221
Q ss_pred CCCCCC--ccCCC---ceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCC-------------CCCe
Q psy1758 1213 NGLPML--NIDEP---TLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKH-------------DDSI 1274 (1527)
Q Consensus 1213 ~~l~~~--~~~~P---~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~-------------~~~g 1274 (1527)
..|..+ .+.++ .+.+.+.+... | +.+.|.+.|.++..+++.++|-...- ++.
T Consensus 571 ~~l~~~~~~~~~~~~~~~~~iikad~~------G---s~eai~~~l~~l~~~~v~~~i~~~~vG~it~~Dv~la~~~~a- 640 (787)
T PRK05306 571 VSLENLFEQMKEGEVKELNLIIKADVQ------G---SVEALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAASNA- 640 (787)
T ss_pred cCHHHhhhhhhcCCceEEEEEEEeCCc------c---hHHHHHHHHHhhcccCCceEEEeeccCCCCHHHHHHHHhcCC-
Confidence 112222 11122 46777765432 3 45789999999999999999866411 133
Q ss_pred EEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEec------ceEeeeeEEEEEEecCcchHHHHHHHh-ccCCeEee
Q psy1758 1275 YEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLN------GELYEPYENLFVDIEEINQGIIMQKLN-YRGGDLKN 1347 (1527)
Q Consensus 1275 ~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~------g~llEP~~~~~i~vp~e~~G~v~~~l~-~rrG~~~~ 1347 (1527)
+++++-=.. -.-+.+..+++|+++... .|+|+-.+ ..+|+|.+.-.+.-+.+.. +... ++.|.+-+
T Consensus 641 ~ii~Fnv~~-~~~~~~~a~~~~v~i~~~--~iIY~l~d~~~~~~~~~l~~~~~e~~~g~a~v~----~vF~~~k~~~iaG 713 (787)
T PRK05306 641 IIIGFNVRP-DAKARKLAEQEGVDIRYY--SIIYDLIDDVKAAMSGMLEPEYEEEIIGQAEVR----EVFKVSKVGTIAG 713 (787)
T ss_pred EEEEEcCCC-CHHHHHHHHHcCCEEEEe--ChHHHHHHHHHHHHhhccCchhheeeeeeEEEE----EEEecCCCCeEEE
Confidence 555443222 222334445678877666 67887542 1356676443332221111 1111 22355555
Q ss_pred eeecCC-----cEEE------EEEEechhhhcChHHHHccccceeEEEEeEecceeecccccccccc
Q psy1758 1348 IEINEK-----ERVR------LEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLG 1403 (1527)
Q Consensus 1348 ~~~~~~-----~~~~------l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~ 1403 (1527)
..-..| ..++ +.|.-....|-.|..+......|+ -+-..|.+|..+. .||+.
T Consensus 714 c~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~-ecgi~~~~~~d~~---~gD~i 776 (787)
T PRK05306 714 CMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGY-ECGIGLENYNDIK---EGDII 776 (787)
T ss_pred EEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCC-EEEEEeeccccCC---CCCEE
Confidence 543211 1111 235556777778888888888888 5666777776666 46665
No 80
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=5.1e-33 Score=338.74 Aligned_cols=260 Identities=24% Similarity=0.296 Sum_probs=211.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe---------------c--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---------------N-- 983 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---------------~-- 983 (1527)
...||+++||+|||||||+.+|+... .|..+.|++||+|++.....+.+ .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~-------------~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~ 99 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVK-------------TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSS 99 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCC-------------cccchhhHHhCCchhccccccccccCcccCCcccccccCCC
Confidence 34689999999999999999998441 26778999999999887775521 1
Q ss_pred ----------------CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-CChhHHHHHHHHHHcCCcc-EEEEe
Q psy1758 984 ----------------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGFKP-IVVVN 1045 (1527)
Q Consensus 984 ----------------~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-~~~qt~~~~~~~~~~glp~-IvviN 1045 (1527)
.+.++|||||||.+|..++.++++.+|+++|||||.+| +++||++++..+..++++. |+|+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 100 KPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQN 179 (460)
T ss_pred cccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEe
Confidence 24799999999999999999999999999999999997 8999999999999999975 67899
Q ss_pred ccCCCCC-ChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCcee
Q psy1758 1046 KIDRSNA-RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQL 1124 (1527)
Q Consensus 1046 KiD~~~a-~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~ 1124 (1527)
|||+.+. ..++..+++++.+.... ...+|++++||++|. |++.|++.|.+.+|.|..+.+.||++
T Consensus 180 KiDlv~~~~~~~~~~ei~~~l~~~~----~~~~~iipVSA~~G~----------nI~~Ll~~L~~~lp~~~r~~~~p~r~ 245 (460)
T PTZ00327 180 KIDLVKEAQAQDQYEEIRNFVKGTI----ADNAPIIPISAQLKY----------NIDVVLEYICTQIPIPKRDLTSPPRM 245 (460)
T ss_pred cccccCHHHHHHHHHHHHHHHHhhc----cCCCeEEEeeCCCCC----------CHHHHHHHHHhhCCCCCCCCCCCcEE
Confidence 9999742 23445556655543321 235799999999998 99999999998999998888899999
Q ss_pred EEEeee--------ccccCceEEEEEeecCccccCCEEEEecCC-----CCCc----CcceeeeEEEeecCceeEeeeee
Q psy1758 1125 QIISLE--------YSSYLGKIGIGRILSGRIKSLQDVVIMNGP-----DDKP----NKAKINQIRVFKGLDRVLVNEAL 1187 (1527)
Q Consensus 1125 ~V~~~~--------~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~-----~g~~----~~~kV~~i~~~~g~~~~~v~~a~ 1187 (1527)
+|..++ ++++.|.++.|+|.+|++++||+|.+.|.+ +|+. ...+|.+|+.+ ..++++|.
T Consensus 246 ~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~----~~~v~~a~ 321 (460)
T PTZ00327 246 IVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAE----NNELQYAV 321 (460)
T ss_pred EEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEEC----CeECCEEc
Confidence 998665 345689999999999999999999999862 1211 23588888764 47899999
Q ss_pred cCCEEEEe-----cc--eecccCCeeeCCCC
Q psy1758 1188 SGDIVLIT-----GI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1188 AGdIvai~-----gl--~~~~iGdTi~~~~~ 1211 (1527)
|||.|+|. ++ +++..|+.|++++.
T Consensus 322 aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 322 PGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred CCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 99999885 33 25678999998754
No 81
>KOG2559|consensus
Probab=100.00 E-value=5.4e-34 Score=298.32 Aligned_cols=198 Identities=24% Similarity=0.275 Sum_probs=187.0
Q ss_pred cccceeeEEEEeCCCCCCHHHHHHHHHHHhcc------------------------------------------------
Q psy1758 658 NKNIIHGVLLLDKPYGLSSNNALKKIKYLLNA------------------------------------------------ 689 (1527)
Q Consensus 658 ~~~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~------------------------------------------------ 689 (1527)
-|+ |+|++|||||+||.|.-+++.|.+.+..
T Consensus 6 i~k-l~Gvl~VYKpsGik~khlr~~i~~~i~k~~~~~~~~s~~q~~~~~~g~~eg~e~~~~~~~~~sV~~~~nhPlv~g~ 84 (318)
T KOG2559|consen 6 IWK-LSGVLCVYKPSGIKSKHLRKLITRKIAKSVSDIESTSRIQLPLISIGVIEGHEKSLVVVGRNSVADYRNHPLVSGR 84 (318)
T ss_pred hhh-hcceeEEecCCCccHHHHHHHHHHHHHhhhcccCCCcccccceEeecccccccceeeeecccchhhhccCCcccCc
Confidence 366 8999999999999999999998776632
Q ss_pred ----ccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCcccEEeecCCCCCCHHHHHHHHH
Q psy1758 690 ----KKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILI 765 (1527)
Q Consensus 690 ----~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~ 765 (1527)
.+|+-...||-.|||||++|+|.++++++ ++.+|.+|+.|-++|.+++..+++|+|++.|+++|+
T Consensus 85 s~~~~~V~v~h~l~~~~sgvl~~gVghgc~~i~-----------~~mlg~aT~~~r~Dgri~~~~n~dhVs~~ri~~vla 153 (318)
T KOG2559|consen 85 SIRQEDVQVVHVLPLATSGVLLFGVGHGCESIP-----------ELMLGSATNVYRIDGRIKKSENIDHVSKHRIEKVLA 153 (318)
T ss_pred chhhcceeeEEeecccccceEEEecCcchhhhh-----------hhhhccchhccCccceEeeecccchhhHHHHHHHHH
Confidence 35777778999999999999999999988 677999999999999999999999999999999999
Q ss_pred hccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEEEEEEecccc--cHHHHHHHHHHHh
Q psy1758 766 NFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGT--YIRVLSEDIGKML 843 (1527)
Q Consensus 766 ~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~~~v~cs~gt--Yirsl~~dig~~l 843 (1527)
.++|+++...++||+++++.++||||||+|..++..+.+..||+|+|++|..|.|+++++|+..| |+|.|+|+||..|
T Consensus 154 ~lq~shq~a~f~~~nvDl~tqEAyElA~RGl~Rp~~~s~~ivygI~l~~F~~P~F~le~qc~~Etqe~Lr~LVh~igl~L 233 (318)
T KOG2559|consen 154 RLQSSHQSASFRHANVDLETQEAYELARRGLPRPQLPSSQIVYGIDLNWFRSPKFSLETQCSGETQEMLRQLVHHIGLNL 233 (318)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHccCCCcCCCCCceEEEEeeeeecCCccEEEEeeccccHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CChhhhHHHhhcccCccccccccC
Q psy1758 844 GCGAHLKYLRRIGIDKLTLDKCLN 867 (1527)
Q Consensus 844 ~~~a~~~~LrR~~~g~f~~~~a~~ 867 (1527)
++.|+|++|||++.|+|++++|+-
T Consensus 234 ~T~a~c~qlrr~r~g~F~~d~aLL 257 (318)
T KOG2559|consen 234 GTEATCIQLRRQRFGPFGSDNALL 257 (318)
T ss_pred cceeeeeeeeeeccCCCCccHHHH
Confidence 999999999999999999998753
No 82
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-32 Score=304.60 Aligned_cols=305 Identities=27% Similarity=0.323 Sum_probs=234.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccc------------ccc-----cceecchhhhhcccceeEeeeeEEEEec
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------QNI-----NARIMDSNEIEKERGITIFSKNCSIEYN 983 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~~~-----~~~~~D~~~~E~erGiTi~~~~~~~~~~ 983 (1527)
...++.-+|++|.|||||+++||+.+..+... +.. -+.++|-.+.|||.||||+..+..|...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 45689999999999999999999986554321 111 1257899999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEE-EeccCCCCCChhhhHHHHH
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV-VNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~Ivv-iNKiD~~~a~~~~v~~~~~ 1062 (1527)
.+++.|.|||||+.|..+|..+.+.||.+|++|||..|+.+||++|...+..+|++++|+ +||||+.+.+ ++..+++.
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~-e~~F~~I~ 163 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYS-EEVFEAIV 163 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccC-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 9999998875 45666666
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEE
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGI 1140 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~ 1140 (1527)
..|..+.....--..-++++||+.|.+.....+ ++..-..||+.+ +.+.........||+++|..+.....--|-..
T Consensus 164 ~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~L-E~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGya 242 (431)
T COG2895 164 ADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEIL-ETVEIADDRSAKAFRFPVQYVNRPNLDFRGYA 242 (431)
T ss_pred HHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHH-hhccccccccccceeeceEEecCCCCcccccc
Confidence 655444332222223589999999974322211 122224566665 56655555667899999998876543345577
Q ss_pred EEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEeccee--cccCCeeeCCCCCCCCCCC
Q psy1758 1141 GRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEE--ICIGSTICDPSKPNGLPML 1218 (1527)
Q Consensus 1141 grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~--~~iGdTi~~~~~~~~l~~~ 1218 (1527)
|+|.+|++++||+|.++|+ | ...+|++|..|.| +.++|.||+-|.+.--++ +..||.|++.+.+.. +.
T Consensus 243 GtiasG~v~~Gd~vvvlPs--G--~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~~~-~~- 312 (431)
T COG2895 243 GTIASGSVKVGDEVVVLPS--G--KTSRVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGDLIVAADAPPA-VA- 312 (431)
T ss_pred eeeeccceecCCeEEEccC--C--CeeeEEEEeccCC----chhhccCCceEEEEEcceeecccCcEEEccCCCcc-hh-
Confidence 9999999999999999988 4 4678999999987 688999999998876665 455999999877643 22
Q ss_pred ccCCCceeEEEEecCCCCCCC
Q psy1758 1219 NIDEPTLTINFMVNNSPLAGR 1239 (1527)
Q Consensus 1219 ~~~~P~l~~~~~~~~~p~~g~ 1239 (1527)
......++|.......+|+
T Consensus 313 --~~f~A~vvWm~~~pl~pGr 331 (431)
T COG2895 313 --DAFDADVVWMDEEPLLPGR 331 (431)
T ss_pred --hhcceeEEEecCCCCCCCc
Confidence 2233556666555444554
No 83
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.98 E-value=6.9e-31 Score=329.43 Aligned_cols=425 Identities=22% Similarity=0.244 Sum_probs=297.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe-EEEEEeCCCCCCch
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHADFG 999 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~iniiDTPGh~df~ 999 (1527)
+.++|+|+||+|||||||+++|.... +. ....+|+|.+.....+.|++. .++|||||||.+|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~--v~--------------~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK--VA--------------QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC--cc--------------cccCCceeecceEEEEEECCCcEEEEEECCCCcchh
Confidence 44689999999999999999996431 11 112368998888888888655 99999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..+.++++.+|+++||||+.+|+++||.+++..+...++|+++++||+|+++++++++.+++.+. . +....+..+.|+
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~-g-~~~~~~~~~~~~ 227 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEY-G-LVPEDWGGDTIF 227 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHh-h-hhHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999887776666555431 0 111111224689
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhh--cCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEe
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKY--VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~--lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~ 1157 (1527)
+++||++|. |+++|++++... ++.+..+++.|+++.|+++.++++.|.+++++|++|+|++||.|.+.
T Consensus 228 v~iSAktGe----------GI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~ 297 (587)
T TIGR00487 228 VPVSALTGD----------GIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVG 297 (587)
T ss_pred EEEECCCCC----------ChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEEC
Confidence 999999998 999999998643 44455567799999999999999999999999999999999999886
Q ss_pred cCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec-ccCCeeeCCCCC------------------------
Q psy1758 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSKP------------------------ 1212 (1527)
Q Consensus 1158 ~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~iGdTi~~~~~~------------------------ 1212 (1527)
+. ..||..|+...| ..+++|.||++|.+.|++++ ..||+++-.++.
T Consensus 298 ~~------~~kVr~l~~~~g---~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~ 368 (587)
T TIGR00487 298 AA------YGRVRAMIDENG---KSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVK 368 (587)
T ss_pred CC------ccEEEEEECCCC---CCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 54 357887776554 47899999999999999987 789999732111
Q ss_pred CCCCCCc-----cCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCC-------------CCCe
Q psy1758 1213 NGLPMLN-----IDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKH-------------DDSI 1274 (1527)
Q Consensus 1213 ~~l~~~~-----~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~-------------~~~g 1274 (1527)
..+..+. -..|.+.+.+.+.+. | +.+.|.+.|.++..+++++++-...- .+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~viikad~~------G---s~eal~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a- 438 (587)
T TIGR00487 369 VTLDNLFEQIKEGELKELNIILKADVQ------G---SLEAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASNA- 438 (587)
T ss_pred cchhHhhhhhhccCCceEEEEEEeCCc------c---hHHHHHHHHHhhcccCCeEEEEEeecCCCchhhHHHHHhcCC-
Confidence 1111111 123777888876442 3 45789999999999999998876411 123
Q ss_pred EEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEec------ceEeeeeEEEEEEecCcchHHHHHHHh-ccCCeEee
Q psy1758 1275 YEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLN------GELYEPYENLFVDIEEINQGIIMQKLN-YRGGDLKN 1347 (1527)
Q Consensus 1275 ~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~------g~llEP~~~~~i~vp~e~~G~v~~~l~-~rrG~~~~ 1347 (1527)
+++++-=... .-..+..+++|+++... .|+|+-.+ ..+|+|...-.+.-+.+.. .-.. ++.|.+.+
T Consensus 439 ~i~~Fnv~~~-~~~~~~a~~~~v~i~~~--~iIY~l~d~~~~~~~~~~~~~~~~~~~g~a~v~----~vf~~~~~~~iaG 511 (587)
T TIGR00487 439 IIIGFNVRPD-ATAKNVAEAENVDIRYY--SVIYKLIDEIRAAMKGMLDPEYEEEIIGQAEVR----QVFNVPKIGNIAG 511 (587)
T ss_pred EEEEEecCCC-HHHHHHHHHcCCeEEEe--ChHHHHHHHHHHHHHhccCcceeeEeeeeEEEE----EEEecCCCCEEEE
Confidence 4444322222 22233345668877666 77886432 1356665443332222211 0111 23355555
Q ss_pred eeecCC-----cEEE------EEEEechhhhcChHHHHccccceeEEEEeEecceeecccccccccc
Q psy1758 1348 IEINEK-----ERVR------LEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLG 1403 (1527)
Q Consensus 1348 ~~~~~~-----~~~~------l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~ 1403 (1527)
..-..| ..++ +.|......|-.+..+.....+|+ -+-..+.+|..++ .||+.
T Consensus 512 ~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~-ecgi~~~~~~~~~---~gD~i 574 (587)
T TIGR00487 512 CYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGY-ECGIGIKNYNDIK---EGDII 574 (587)
T ss_pred EEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCC-EEEEEEeccccCC---CCCEE
Confidence 543211 1121 225556666667777777777777 4555566665555 35554
No 84
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.97 E-value=4e-31 Score=339.66 Aligned_cols=279 Identities=24% Similarity=0.275 Sum_probs=217.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccc------------ccc-----cceecchhhhhcccceeEeeeeEEEEec
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------QNI-----NARIMDSNEIEKERGITIFSKNCSIEYN 983 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~~~-----~~~~~D~~~~E~erGiTi~~~~~~~~~~ 983 (1527)
...||+|+||+|||||||+++|++.+|.+... +.+ ..+++|..+.|++||+|++.....+.++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 34579999999999999999999998877621 221 1378999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCCh---hhhHH
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNARP---EWVVD 1059 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~~---~~v~~ 1059 (1527)
+.+++|||||||.+|...+..++..+|+++|||||.+|+++||++++..+..+++| .|+|+||+|+.+.+. +++.+
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~ 182 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVA 182 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999975 567899999975332 23333
Q ss_pred HHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCce
Q psy1758 1060 ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGK 1137 (1527)
Q Consensus 1060 ~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~ 1137 (1527)
++.+.+..++. -+.|++++||++|.+..+... .+.....|++.| +.++.|....+.||+++|..++...+.++
T Consensus 183 ~i~~~~~~~~~----~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~ 257 (632)
T PRK05506 183 DYRAFAAKLGL----HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHL-ETVEIASDRNLKDFRFPVQYVNRPNLDFR 257 (632)
T ss_pred HHHHHHHHcCC----CCccEEEEecccCCCccccccCCCcccHhHHHHHH-hcCCCCCCcCCCCceeeEEEEEecCCCce
Confidence 44333333322 235799999999984332211 111123566665 55676666678999999998765433333
Q ss_pred EEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecc--eecccCCeeeCCCCC
Q psy1758 1138 IGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGI--EEICIGSTICDPSKP 1212 (1527)
Q Consensus 1138 v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl--~~~~iGdTi~~~~~~ 1212 (1527)
...|+|.+|+|++||+|.++|. + ...+|.+|+.+. .++++|.|||.|++..- .++..|++||+++++
T Consensus 258 g~~G~v~~G~l~~gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~~~~ 326 (632)
T PRK05506 258 GFAGTVASGVVRPGDEVVVLPS--G--KTSRVKRIVTPD----GDLDEAFAGQAVTLTLADEIDISRGDMLARADNR 326 (632)
T ss_pred EEEEEEecceeecCCEEEEcCC--C--ceEEEEEEEECC----ceeCEEcCCCeEEEEecCccccCCccEEecCCCC
Confidence 3679999999999999999976 3 457899998664 46899999999987643 467889999998653
No 85
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=5.7e-31 Score=332.78 Aligned_cols=251 Identities=24% Similarity=0.278 Sum_probs=210.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCCchHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~df~~ev 1002 (1527)
.|+++||+|||||||+++|+.. .+|..+.|++||+|++.....+.. ++..++|||||||.+|..++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~-------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV-------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHH
Confidence 4899999999999999999643 147778899999999998877766 46789999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCC-ChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA-RPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a-~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+++..+|+++||||+.+|+++||++++..+...++|. |||+||+|+.+. ..+.+.+++.+.+...+.. ..|++
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~----~~~ii 144 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFA----EAKLF 144 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCC----CCcEE
Confidence 99999999999999999999999999999999999996 689999999653 2344555665554333211 35899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCC
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~ 1160 (1527)
++||++|+ |++.|++.|.+. +.|..+.++||+++|..++..++.|.++.|+|.+|+|++||+|.+.+.
T Consensus 145 ~VSA~tG~----------gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~- 212 (614)
T PRK10512 145 VTAATEGR----------GIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGV- 212 (614)
T ss_pred EEeCCCCC----------CCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCC-
Confidence 99999998 999999999765 555555789999999999999999999999999999999999999876
Q ss_pred CCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ec-ce--ecccCCeeeCCC
Q psy1758 1161 DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TG-IE--EICIGSTICDPS 1210 (1527)
Q Consensus 1161 ~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~g-l~--~~~iGdTi~~~~ 1210 (1527)
+ ...+|.+|+.+ ..++++|.|||.|++ .| ++ ++..||++|++.
T Consensus 213 -~--~~~~VrsIq~~----~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 213 -N--KPMRVRGLHAQ----NQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred -C--CcEEEEEEecC----CcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 2 35688888765 368999999999977 44 43 688999999863
No 86
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.97 E-value=1.3e-30 Score=317.48 Aligned_cols=262 Identities=26% Similarity=0.316 Sum_probs=209.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----------------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---------------- 983 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---------------- 983 (1527)
....||+++||+|||||||+++|.. ..+|..+.|++||+|+......+.|.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~-------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTG-------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPK 73 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhC-------------eecccCHhHHhcCcEEEecccccccccccccCcccccccccc
Confidence 3457999999999999999999942 13688999999999999876554442
Q ss_pred ----------CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCCc-cEEEEeccCCCC
Q psy1758 984 ----------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGFK-PIVVVNKIDRSN 1051 (1527)
Q Consensus 984 ----------~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~glp-~IvviNKiD~~~ 1051 (1527)
.++++|||||||.+|..++.+++..+|++++|||+++|. .+||..++..+...+++ .++|+||+|+.+
T Consensus 74 ~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 74 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 268999999999999999999999999999999999997 89999999998888875 688899999975
Q ss_pred CCh-hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeee
Q psy1758 1052 ARP-EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE 1130 (1527)
Q Consensus 1052 a~~-~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~ 1130 (1527)
.+. ....+++...+... ....+|++++||++|. |++.|++.|.+.+|.|..+.+.||+++|.+++
T Consensus 154 ~~~~~~~~~~i~~~l~~~----~~~~~~ii~vSA~~g~----------gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f 219 (411)
T PRK04000 154 KERALENYEQIKEFVKGT----VAENAPIIPVSALHKV----------NIDALIEAIEEEIPTPERDLDKPPRMYVARSF 219 (411)
T ss_pred chhHHHHHHHHHHHhccc----cCCCCeEEEEECCCCc----------CHHHHHHHHHHhCCCCCCCCCCCceEEEEeee
Confidence 321 12233444332211 1124689999999998 99999999999999888778899999999877
Q ss_pred --------ccccCceEEEEEeecCccccCCEEEEecCCC----CC----cCcceeeeEEEeecCceeEeeeeecCCEEEE
Q psy1758 1131 --------YSSYLGKIGIGRILSGRIKSLQDVVIMNGPD----DK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLI 1194 (1527)
Q Consensus 1131 --------~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~----g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai 1194 (1527)
++++.|.++.|||.+|+|++||.|.++|.+. |. ....+|.+|..+ ..++++|.|||.|++
T Consensus 220 ~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~----~~~~~~a~~G~~v~i 295 (411)
T PRK04000 220 DVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAG----GEKVEEARPGGLVGV 295 (411)
T ss_pred eecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEEC----CEECCEEcCCCEEEE
Confidence 3456788999999999999999999997621 10 123578888765 378999999999987
Q ss_pred e-----cc--eecccCCeeeCCCCC
Q psy1758 1195 T-----GI--EEICIGSTICDPSKP 1212 (1527)
Q Consensus 1195 ~-----gl--~~~~iGdTi~~~~~~ 1212 (1527)
+ ++ .++..||.||+++.+
T Consensus 296 ~l~~~~~i~~~~i~~G~vl~~~~~~ 320 (411)
T PRK04000 296 GTKLDPSLTKADALAGSVAGKPGTL 320 (411)
T ss_pred EeccCCCCCHHHccCccEEEcCCCC
Confidence 5 33 357789999998654
No 87
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.97 E-value=2.1e-30 Score=316.17 Aligned_cols=259 Identities=27% Similarity=0.347 Sum_probs=208.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-------------------
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------- 982 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------- 982 (1527)
..||+++||+|||||||+++|... .+|..+.|++||+|+......+.+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCP 70 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCcccccccccccc
Confidence 468999999999999999999532 358889999999999987655432
Q ss_pred -------cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC
Q psy1758 983 -------NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR 1053 (1527)
Q Consensus 983 -------~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~ 1053 (1527)
.++.++|||||||.+|..++.++++.+|+++|||||++|. ++||++++..+..++++ .++|+||+|+.+.+
T Consensus 71 ~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 71 NCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred ccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHH
Confidence 1468999999999999999999999999999999999998 89999999999888876 67889999997542
Q ss_pred h-hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeec-
Q psy1758 1054 P-EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY- 1131 (1527)
Q Consensus 1054 ~-~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~- 1131 (1527)
. .+..+++.+.+... ....+|++++||++|. |++.|+++|...+|.|..+.+.||+++|+.+++
T Consensus 151 ~~~~~~~~i~~~l~~~----~~~~~~ii~vSA~~g~----------gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v 216 (406)
T TIGR03680 151 KALENYEEIKEFVKGT----VAENAPIIPVSALHNA----------NIDALLEAIEKFIPTPERDLDKPPLMYVARSFDV 216 (406)
T ss_pred HHHHHHHHHHhhhhhc----ccCCCeEEEEECCCCC----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEee
Confidence 1 22234444333211 1225789999999998 999999999998998887888999999998773
Q ss_pred -------cccCceEEEEEeecCccccCCEEEEecCC----CCC----cCcceeeeEEEeecCceeEeeeeecCCEEEEe-
Q psy1758 1132 -------SSYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT- 1195 (1527)
Q Consensus 1132 -------d~~~G~v~~grV~sG~lk~Gd~v~~~~~~----~g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~- 1195 (1527)
++++|.++.|+|.+|+|++||.|.++|.+ +|. ....+|.+|..+ ..++++|.|||.|++.
T Consensus 217 ~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~----~~~~~~a~~G~~v~i~l 292 (406)
T TIGR03680 217 NKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG----GYKVEEARPGGLVGVGT 292 (406)
T ss_pred cCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEEC----CEECCEEcCCCEEEEee
Confidence 45578899999999999999999999762 110 123578888765 3789999999999874
Q ss_pred ----cc--eecccCCeeeCCCC
Q psy1758 1196 ----GI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1196 ----gl--~~~~iGdTi~~~~~ 1211 (1527)
++ .++..||.+|+++.
T Consensus 293 ~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 293 KLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred ccCCCCCHHHcccccEEEcCCC
Confidence 33 35677999999764
No 88
>KOG0458|consensus
Probab=99.97 E-value=5e-30 Score=303.08 Aligned_cols=279 Identities=26% Similarity=0.281 Sum_probs=227.4
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccc---------------cccccceecchhhhhcccceeEeeeeEEEEec
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRK---------------NQNINARIMDSNEIEKERGITIFSKNCSIEYN 983 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~---------------~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 983 (1527)
+....+.+++||+|+|||||.++||+.-|.+.. ..+..+|+||....||+||+|++.+...|+.+
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 446789999999999999999999998777652 22445699999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCccE-EEEeccCCCCCC--
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFKPI-VVVNKIDRSNAR-- 1053 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~-------~qt~~~~~~~~~~glp~I-vviNKiD~~~a~-- 1053 (1527)
.+.+.|+|+|||.||..+|..+...||.++|||||+.|.+ .||++|...+..+|+..+ |++||||..+++
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHH
Confidence 9999999999999999999999999999999999997654 499999999999998875 559999999885
Q ss_pred -hhhhHHHHHHHHhh-hcccccccCCcEEEeccccCCcCCC-----cccccCCChhHHHHHHhhcCCCCCCCCCCceeEE
Q psy1758 1054 -PEWVVDATFDLFDK-LCATEEQLDFPVIYTSALHGYANEN-----SKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI 1126 (1527)
Q Consensus 1054 -~~~v~~~~~~~~~~-l~~~~~~~~~pvi~~SA~~g~~~~~-----~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V 1126 (1527)
++++...+...+.+ .+..+ -++.++++|+++|.+-.. ....+..-..||+.|-. +..|....+.||++.|
T Consensus 334 RF~eIk~~l~~fL~~~~gf~e--s~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ltI 410 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKE--SSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLTI 410 (603)
T ss_pred HHHHHHHHHHHHHHHhcCccc--CCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEEEh
Confidence 55555555555522 22222 245689999999974211 11123444578998866 7777777888999999
Q ss_pred EeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--eccc
Q psy1758 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICI 1202 (1527)
Q Consensus 1127 ~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~i 1202 (1527)
.++...+..|..++|||.+|.|++||.|+++++ .....|..|..- ..+...|.|||-|.+ .|+. .+.+
T Consensus 411 sdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s----~e~~~vk~l~~~----~~~~~~a~AGD~Vsl~L~~i~~n~v~~ 482 (603)
T KOG0458|consen 411 SDIYPLPSSGVSISGKIESGYIQPGQKLYIMTS----REDATVKGLTSN----DEPKTWAVAGDNVSLKLPGILPNLVQV 482 (603)
T ss_pred hheeecCCCeeEEEEEEeccccccCCEEEEecC----cceEEEEeeecC----CCcceeEeeCCEEEEecCccChhhccc
Confidence 999999999999999999999999999999977 245678877544 357889999999976 4543 5788
Q ss_pred CCeeeC
Q psy1758 1203 GSTICD 1208 (1527)
Q Consensus 1203 GdTi~~ 1208 (1527)
||++|.
T Consensus 483 g~i~~~ 488 (603)
T KOG0458|consen 483 GDIADS 488 (603)
T ss_pred ceeeec
Confidence 999994
No 89
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=4.9e-29 Score=291.63 Aligned_cols=150 Identities=25% Similarity=0.410 Sum_probs=125.1
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh-----hHH----HHHHhhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE-----AFT----AMRARGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e-----~f~----~~~~~~~~~ 139 (1527)
|.|+|+|.||||||||+|+|++... .++..||+|+|..+....|.+.++.++||+|-+ .+. .....++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999885 889999999999999999999999999999943 233 333456789
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
||++|||+|+..|+.+++.+....++..+.|+|+|+||+|-... +....+... -+.-..+++||.+|.|+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~--e~~~~efys--------lG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA--EELAYEFYS--------LGFGEPVPISAEHGRGI 153 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--hhhHHHHHh--------cCCCCceEeehhhccCH
Confidence 99999999999999999999999999888999999999997531 111111111 12347899999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
.+|++.+...
T Consensus 154 ~dLld~v~~~ 163 (444)
T COG1160 154 GDLLDAVLEL 163 (444)
T ss_pred HHHHHHHHhh
Confidence 9999999744
No 90
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.97 E-value=4.4e-30 Score=324.98 Aligned_cols=426 Identities=20% Similarity=0.205 Sum_probs=281.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----CeEEEEEeCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----GTRINIIDTPGH 995 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----~~~iniiDTPGh 995 (1527)
.+.++|+|+||+|||||||+++|+...... +..+|+|.......+.|. ++.++|||||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEecCCceEEEEEECCcH
Confidence 466899999999999999999997653221 223688877666666653 589999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+|...+.++++.+|++||||||.+|+++||.++|..+...++|+|+|+||+|+++++.+.+.+++... .+.......
T Consensus 306 e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~--~ll~e~~g~ 383 (742)
T CHL00189 306 EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY--NLIPEKWGG 383 (742)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh--ccchHhhCC
Confidence 999999999999999999999999999999999999999999999999999999887766555554331 000111112
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC--CCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCE
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP--VHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp--~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~ 1153 (1527)
.+|++++||++|. |+++|++++..... .+..+++.|+.+.|+++..|++.|.+++++|++|+|++||.
T Consensus 384 ~vpvv~VSAktG~----------GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~ 453 (742)
T CHL00189 384 DTPMIPISASQGT----------NIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDI 453 (742)
T ss_pred CceEEEEECCCCC----------CHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCE
Confidence 4789999999998 99999999977542 34456678999999999999999999999999999999999
Q ss_pred EEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecc-eecccCCeeeCCCCCC---------------CC-C
Q psy1758 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGI-EEICIGSTICDPSKPN---------------GL-P 1216 (1527)
Q Consensus 1154 v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl-~~~~iGdTi~~~~~~~---------------~l-~ 1216 (1527)
|.+.+. .++|+.+.+....++++|.|||+|+|.|+ +...+||++.-.++.. .. .
T Consensus 454 vv~g~~---------~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~~ 524 (742)
T CHL00189 454 IVIGTS---------YAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVFNSEKEAKLKIIKNKENNKKDTTK 524 (742)
T ss_pred EEECCc---------ceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhhc
Confidence 987543 23444555566678999999999999999 4567899996432210 00 0
Q ss_pred CCc----------cCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCC-------------CCC
Q psy1758 1217 MLN----------IDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKH-------------DDS 1273 (1527)
Q Consensus 1217 ~~~----------~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~-------------~~~ 1273 (1527)
.+. -..+.+.+.+.... .| +.+.|.+.|.++....+.++|-...- ++.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~iiKad~------~G---s~EAi~~~l~~~~~~~v~i~i~~~~vG~it~~Dv~lA~~~~a 595 (742)
T CHL00189 525 RITLSTTKTINKKDNKKQINLIIKTDT------QG---SIEAIINSISQIPQKKVQLNILYASLGEVTETDVEFASTTNA 595 (742)
T ss_pred ccchHHHHHHhhhcCCceeeEEEEeCC------cc---hHHHHHHHHHhcCCCcEEEEEEEeecCCCCHHHHHHHHhcCC
Confidence 000 01245555665432 23 45677788877754445555544311 122
Q ss_pred eEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEec------ceEeeeeEEEEEEecCcchHHHHHHHhccCCeEee
Q psy1758 1274 IYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLN------GELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKN 1347 (1527)
Q Consensus 1274 g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~------g~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~ 1347 (1527)
+++++ +---..-..+..+++|+++... .|+|+-.+ ..+|+|.+.-.+.-..+ |.......+|.+.+
T Consensus 596 -~ii~F-nv~~~~~~~~~a~~~~v~i~~~--~iIY~lid~~~~~~~~~l~~~~~~~~~g~a~----v~~vF~~~k~~iaG 667 (742)
T CHL00189 596 -EILAF-NTNLAPGAKKAARKLNIIIKEY--QVIYDLLEYIEALMEDLLDPEYKKVPIGEAE----VKTVFPLAKRFVAG 667 (742)
T ss_pred -EEEEe-eCCCCHHHHHHHHHcCCEEEEe--ChHHHHHHHHHHHHhhccCceeeeeeceeEE----eeEEEecCCCEEEE
Confidence 33332 2211122223334567766555 67776432 13556654322110000 11111112355665
Q ss_pred eeecC-----CcEEE------EEEEechhhhcChHHHHccccceeEEEEeEecceeecccccccccc
Q psy1758 1348 IEINE-----KERVR------LEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLG 1403 (1527)
Q Consensus 1348 ~~~~~-----~~~~~------l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~ 1403 (1527)
..-.. +..++ +.|......|-.|..+.....+|+= +-..+.+|..+. .||+.
T Consensus 668 c~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~e-cgi~i~~~~d~~---~gD~i 730 (742)
T CHL00189 668 CRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNE-CGIFIEEFQLWQ---SGDKI 730 (742)
T ss_pred EEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCE-EEEEeeCCCCCC---cCCEE
Confidence 54321 11222 2355566677778888888877752 333445555554 36654
No 91
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=1.6e-29 Score=319.22 Aligned_cols=252 Identities=26% Similarity=0.283 Sum_probs=208.4
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++||+|||||||+++|+... +|..+.|+++|+|++.....+.++++.++|||||||.+|...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~-------------~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA-------------ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc-------------CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHH
Confidence 79999999999999999997431 36677899999999999999999999999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccccccCCcEEE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVIY 1081 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~~pvi~ 1081 (1527)
.++..+|++++|||+++|+++||.+++..+...++| .|+|+||+|+.+.+ .+.+.+++.+.+...+.. ..+|+++
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~---~~~~ii~ 145 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFL---KNAKIFK 145 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCC---CCCcEEE
Confidence 999999999999999999999999999999999999 89999999997533 223344555444332211 1468999
Q ss_pred eccccCCcCCCcccccCCChhHHHHHHhhcCCCC-CCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCC
Q psy1758 1082 TSALHGYANENSKARQGNMIPLFEAILKYVPVHK-DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160 (1527)
Q Consensus 1082 ~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~-~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~ 1160 (1527)
+||++|. |++++++.+.+.++... ...++||+++|..++..++.|.++.|+|.+|++++||+|.++|.
T Consensus 146 vSA~tG~----------GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~- 214 (581)
T TIGR00475 146 TSAKTGQ----------GIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPI- 214 (581)
T ss_pred EeCCCCC----------CchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCC-
Confidence 9999998 88888888766554321 12578999999999999999999999999999999999999987
Q ss_pred CCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCeeeCC
Q psy1758 1161 DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTICDP 1209 (1527)
Q Consensus 1161 ~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi~~~ 1209 (1527)
+ ...+|.+|+.+ ..++++|.|||.|++ .|++ ++..|..++++
T Consensus 215 -~--~~~~Vr~iq~~----~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~ 260 (581)
T TIGR00475 215 -N--HEVRVKAIQAQ----NQDVEIAYAGQRIALNLMDVEPESLKRGLLILTP 260 (581)
T ss_pred -C--ceEEEeEEEEC----CccCCEEECCCEEEEEeCCCCHHHcCCceEEcCC
Confidence 2 45789999765 367999999999976 4553 57789666543
No 92
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=1.3e-29 Score=282.69 Aligned_cols=190 Identities=42% Similarity=0.605 Sum_probs=160.3
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----------CeEEEEEeC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----------GTRINIIDT 992 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----------~~~iniiDT 992 (1527)
|||||+||+|||||||+++|++.+|.+.+......++||+.+.|++||+|+.++..++.|. ++.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 7999999999999999999999999877665555689999999999999999998888886 789999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC----CCChhhhHHHHHHHHhhh
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS----NARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~----~a~~~~v~~~~~~~~~~l 1068 (1527)
|||.+|..++.++++.+|++++|||+.+|+..||+.+++.+...++|+++|+||+|+. ..++++....+.+++.++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 234555555555544433
Q ss_pred cc-------------cccccCC-c----EEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1069 CA-------------TEEQLDF-P----VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1069 ~~-------------~~~~~~~-p----vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.. .+++..+ | |+++||+.||+. +.. .-..+.++|+.|++++|+|
T Consensus 161 n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f-~~~-~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF-TII-KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred hHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe-ccc-cccchHHHHHHHHhhCCCC
Confidence 22 1123345 7 999999999975 332 2346789999999999987
No 93
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.96 E-value=6e-27 Score=290.42 Aligned_cols=149 Identities=24% Similarity=0.360 Sum_probs=120.3
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh--------HHHHHHhhcccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA--------FTAMRARGAKVT 140 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~--------f~~~~~~~~~~a 140 (1527)
++|+++|++|||||||+++|.+... .....+++|++.....+.+++..+.+|||||++. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 6899999999999999999998775 4677889999999988999999999999999887 333445677899
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|++++|+|+.++......+....++..+.|+++|+||+|+.+.. ....+.. .+ +...++++||++|.|++
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--~~~~~~~-------~l-g~~~~~~iSa~~g~gv~ 151 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--ADAYEFY-------SL-GLGEPYPISAEHGRGIG 151 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--hhHHHHH-------hc-CCCCCEEEEeeCCCCHH
Confidence 99999999999888877777788888899999999999975411 1111111 11 12247899999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
++++.+..
T Consensus 152 ~l~~~I~~ 159 (435)
T PRK00093 152 DLLDAILE 159 (435)
T ss_pred HHHHHHHh
Confidence 99998863
No 94
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.7e-28 Score=283.91 Aligned_cols=250 Identities=28% Similarity=0.345 Sum_probs=215.4
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
.|+..||+|||||||+.++.+. ..|..+.|++||+|++....++...++.+.|||+|||+||...+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~-------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG-------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc-------------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHH
Confidence 5889999999999999999643 238889999999999999999999999999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEEe
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 1082 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~ 1082 (1527)
.++...|.++||||+.+|+++||.+++..+..+|++. ++|+||+|+.+. +++.+.+.+.+..+. -.+.|++.+
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i~~Il~~l~----l~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKIKQILADLS----LANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHHHHHHhhcc----ccccccccc
Confidence 9999999999999999999999999999999999999 889999999652 223333333333322 224578999
Q ss_pred ccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCC
Q psy1758 1083 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 1162 (1527)
Q Consensus 1083 SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g 1162 (1527)
|+.+|. |+++|-+.|.+....+..+.+.||+++|...+...+.|.|+.|.++||++++||++++.|.
T Consensus 143 s~~~g~----------GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~--- 209 (447)
T COG3276 143 SAKTGR----------GIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPI--- 209 (447)
T ss_pred ccccCC----------CHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecC---
Confidence 999998 9999999998776556778899999999999999999999999999999999999999987
Q ss_pred CcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cc--eecccCCeeeCCC
Q psy1758 1163 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPS 1210 (1527)
Q Consensus 1163 ~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~iGdTi~~~~ 1210 (1527)
.+..+|.+|+.++ +++++|.||+.|+++ |. +++..||.|.+++
T Consensus 210 -~k~v~VRsIq~~d----~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 210 -NKEVRVRSIQAHD----VDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred -CCeEEEEeeeecC----cchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 3568899998765 689999999999764 54 3677899998765
No 95
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.96 E-value=3e-29 Score=275.31 Aligned_cols=182 Identities=36% Similarity=0.466 Sum_probs=158.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEE--ecCeEEEEEeCCCCC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIE--YNGTRINIIDTPGHA 996 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~--~~~~~iniiDTPGh~ 996 (1527)
++|||+++||+|||||||+++|++..+.+.+.+... .+.+|..+.|+++|+|+......+. ++++.++|+|||||.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 579999999999999999999999988776654332 3578999999999999999999999 999999999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHH-hhhccccccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF-DKLCATEEQL 1075 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~-~~l~~~~~~~ 1075 (1527)
+|..++.++++.+|++|+||||.+|+.+||++++..+..+++|+|+|+||||+...++++..+++...| ....... ..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 160 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG-EE 160 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT-TS
T ss_pred ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc-cc
Confidence 999999999999999999999999999999999999999999999999999999777777888887554 2222211 13
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.+|++++||++|+ |++.|++++.+++|+
T Consensus 161 ~~~vi~~Sa~~g~----------gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 161 IVPVIPISALTGD----------GIDELLEALVELLPS 188 (188)
T ss_dssp TEEEEEEBTTTTB----------THHHHHHHHHHHS--
T ss_pred cceEEEEecCCCC----------CHHHHHHHHHHhCcC
Confidence 5799999999999 999999999999985
No 96
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.95 E-value=4.7e-27 Score=295.78 Aligned_cols=250 Identities=28% Similarity=0.373 Sum_probs=204.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccc--cc--------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTN--VV--------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR 133 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~--~~--------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~ 133 (1527)
.+|+|+||+|||||||+++|.... +. .....|+|+......+.|++.+++|||||||++|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 369999999999999999997632 11 12345899999999999999999999999999999999
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc--ccccCCCCcEEEe
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI--PEEYGGASPFISI 211 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~i 211 (1527)
.++++.+|++++|+|+.+|..+|+..+|..+...++|+|+|+||+|+.+++..++..++...... .......+|++++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~ 161 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYA 161 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEec
Confidence 99999999999999999999999999999999999999999999999876555544433222110 0011123689999
Q ss_pred eccCCC----------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce-
Q psy1758 212 SAKTGV----------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS- 280 (1527)
Q Consensus 212 SAktg~----------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~- 280 (1527)
||++|. |++.||+.+... ...+..+.+.|+.++|++...+++.|++++++|.+|+|++||.|.+.+.
T Consensus 162 SA~~g~~~~~~~~~~~gi~~Lld~Iv~~--lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~ 239 (594)
T TIGR01394 162 SGRAGWASLDLDDPSDNMAPLFDAIVRH--VPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRD 239 (594)
T ss_pred hhhcCcccccCcccccCHHHHHHHHHHh--CCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCC
Confidence 999996 799999998744 2223334578999999999999999999999999999999999988654
Q ss_pred ----eeeEeEeeccCC---ceeeecCCCcceEecCCCCCCCCCCeEEEe
Q psy1758 281 ----YGRIRSMLNENG---KNILEAGPSIPVEIQGLTKVPFSGEELFVI 322 (1527)
Q Consensus 281 ----~~kVr~i~~~~g---~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~ 322 (1527)
..+|++++...| .++.+|.+|+.+.+.|++++ ..||++...
T Consensus 240 ~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i-~~Gdtl~~~ 287 (594)
T TIGR01394 240 GTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI-NIGETIADP 287 (594)
T ss_pred CceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc-CCCCEEeCC
Confidence 368888887654 67899999999999999876 789988643
No 97
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.95 E-value=8.4e-28 Score=276.60 Aligned_cols=143 Identities=42% Similarity=0.551 Sum_probs=134.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
||+|+||+|||||||+++|++.+|.+.+.+.+. .+++|+.+.|++||+|+++...++.|+++++++||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 799999999999999999999999887766655 479999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHh
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFD 1066 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~ 1066 (1527)
+.++++.+|++|+||||.+|+++||+.+|+.+.+.++|+++|+||+|+.+++++.+++++++.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~ 145 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLG 145 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998888888888887763
No 98
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.95 E-value=8.7e-27 Score=294.39 Aligned_cols=235 Identities=28% Similarity=0.365 Sum_probs=192.9
Q ss_pred CEEEEEecCCCChhHHHHHHHcc---ccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKT---NVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~---~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++||+|||||||+++|++. .+.....+|+|+++....+.+++..++|||||||++|..++..++..+|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 36999999999999999999963 344556689999999988999889999999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+|++++.++|+.+++..+...++| +|+|+||+|+.+.+.. ....++... .....+...++++++||++|.|++++++
T Consensus 81 VDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~-l~~~~~~~~~~ii~vSA~tG~GI~eL~~ 159 (581)
T TIGR00475 81 VDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQI-LNSYIFLKNAKIFKTSAKTGQGIGELKK 159 (581)
T ss_pred EECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHH-HHHhCCCCCCcEEEEeCCCCCCchhHHH
Confidence 999999999999999999889999 9999999999764321 111122111 0001111247999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCc
Q psy1758 225 NISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSI 302 (1527)
Q Consensus 225 ~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~ 302 (1527)
.+....+..+.. ..+.|++..|.+++..+|.|+|++|++.+|++++||.+.++| ...+|++|+. +++++.+|.||+
T Consensus 160 ~L~~l~~~~~~~-~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~-~~~~v~~a~aG~ 237 (581)
T TIGR00475 160 ELKNLLESLDIK-RIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQA-QNQDVEIAYAGQ 237 (581)
T ss_pred HHHHHHHhCCCc-CcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEE-CCccCCEEECCC
Confidence 997655433322 246789999999999999999999999999999999999976 4589999965 567899999998
Q ss_pred ceEec
Q psy1758 303 PVEIQ 307 (1527)
Q Consensus 303 ~v~I~ 307 (1527)
.+.|.
T Consensus 238 rval~ 242 (581)
T TIGR00475 238 RIALN 242 (581)
T ss_pred EEEEE
Confidence 88774
No 99
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.95 E-value=3.8e-27 Score=263.49 Aligned_cols=279 Identities=24% Similarity=0.339 Sum_probs=232.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----------------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---------------- 983 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---------------- 983 (1527)
....+|+..||+|||||||+.+|. +|......-....++|....|-+||.|-+.+..-+-++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~Lv--tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLV--TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEE--ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 455789999999999999999997 55555544444568899999999999988777766552
Q ss_pred -------CeEEEEEeCCCCCCchHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCC-CC
Q psy1758 984 -------GTRINIIDTPGHADFGGEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN-AR 1053 (1527)
Q Consensus 984 -------~~~iniiDTPGh~df~~ev~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~-a~ 1053 (1527)
+..+.|+||-||+.+...+.++| +..|..+|+|.|.+|++-.|++|+..+..+++|+||+++|+|+.. .+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr 272 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDR 272 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHH
Confidence 35688999999999999999998 789999999999999999999999999999999999999999854 45
Q ss_pred hhhhHHHHHHHHhhhcc------------------cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC-
Q psy1758 1054 PEWVVDATFDLFDKLCA------------------TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH- 1114 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~------------------~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p- 1114 (1527)
...+.+++..++.-.+. ...+.-.|++++|+.+|. |+ ++|+.+...+|..
T Consensus 273 ~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~----------Gl-dlL~e~f~~Lp~rr 341 (527)
T COG5258 273 FQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE----------GL-DLLDEFFLLLPKRR 341 (527)
T ss_pred HHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc----------cH-HHHHHHHHhCCccc
Confidence 77888888877743211 011123799999999998 77 6777777888877
Q ss_pred CCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE-
Q psy1758 1115 KDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL- 1193 (1527)
Q Consensus 1115 ~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva- 1193 (1527)
..+.++||.|+|.+++...++|.++.|.|.+|.+..||++++.|-.+|+..+.+|++|... +..+++|.||+|+.
T Consensus 342 ~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh----~~rvdsa~aG~iig~ 417 (527)
T COG5258 342 RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMH----HYRVDSAKAGSIIGI 417 (527)
T ss_pred ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEe----eEEeccccCCcEEEE
Confidence 4477899999999999999999999999999999999999999887888888899998755 47899999999985
Q ss_pred -Eecce--ecccCCeeeCCCCCCCC
Q psy1758 1194 -ITGIE--EICIGSTICDPSKPNGL 1215 (1527)
Q Consensus 1194 -i~gl~--~~~iGdTi~~~~~~~~l 1215 (1527)
+.|++ .+..|..++....|.+.
T Consensus 418 Al~gv~~e~lerGMVl~~~~~pkaV 442 (527)
T COG5258 418 ALKGVEKEELERGMVLSAGADPKAV 442 (527)
T ss_pred EecccCHHHHhcceEecCCCCchhh
Confidence 56775 48889999876455443
No 100
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.95 E-value=2.3e-27 Score=268.58 Aligned_cols=181 Identities=43% Similarity=0.618 Sum_probs=163.2
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
||+|+||+|+|||||+++|++.+|.+.+.+.+.. +++|+.+.|++||+|+......+.|+++++++||||||.+|..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 7999999999999999999999999887766554 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh-------------
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------------- 1068 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l------------- 1068 (1527)
+.++++.+|++++|+|+.+|+..|++.+|+.+.+.++|.++|+||+|+.+++++++++++++.|..-
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 160 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNI 160 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeee
Confidence 9999999999999999999999999999999999999999999999999999999999998877420
Q ss_pred --------------ccccc----------cc-----------------CCcEEEeccccCCcCCCcccccCCChhHHHHH
Q psy1758 1069 --------------CATEE----------QL-----------------DFPVIYTSALHGYANENSKARQGNMIPLFEAI 1107 (1527)
Q Consensus 1069 --------------~~~~~----------~~-----------------~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i 1107 (1527)
...++ .+ -+||+++||.++. |+.+||+.+
T Consensus 161 ~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~----------Gv~~ll~~~ 230 (237)
T cd04168 161 CETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGI----------GIEELLEGI 230 (237)
T ss_pred eeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCc----------CHHHHHHHH
Confidence 00000 00 1799999999998 999999999
Q ss_pred HhhcCCC
Q psy1758 1108 LKYVPVH 1114 (1527)
Q Consensus 1108 ~~~lp~p 1114 (1527)
.+++|+|
T Consensus 231 ~~~~p~~ 237 (237)
T cd04168 231 TKLFPTS 237 (237)
T ss_pred HHhcCCC
Confidence 9999987
No 101
>KOG1145|consensus
Probab=99.95 E-value=5.3e-27 Score=273.12 Aligned_cols=251 Identities=29% Similarity=0.349 Sum_probs=205.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCCch
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFG 999 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~df~ 999 (1527)
+.+-|.|+||+|||||||+++|-+.+-+-... -|||-......+.. +|.+++|+|||||+-|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~----------------GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA----------------GGITQHIGAFTVTLPSGKSITFLDTPGHAAFS 215 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhc----------------CCccceeceEEEecCCCCEEEEecCCcHHHHH
Confidence 56789999999999999999996543222111 35664443333322 68999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..-.|+...+|.++|||.|.+|+++||.+.+..|+..++|+||.+||+|+++++++.+..++... .+...+..-++++
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~--gi~~E~~GGdVQv 293 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ--GIVVEDLGGDVQV 293 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc--CccHHHcCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999988887542 1122222335789
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhh--cCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEe
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKY--VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~--lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~ 1157 (1527)
+++||++|. |++.|.+++.-. +-.-..++.+|+.+.|.....|+.+|.++..-|-.|||++|+-+...
T Consensus 294 ipiSAl~g~----------nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G 363 (683)
T KOG1145|consen 294 IPISALTGE----------NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAG 363 (683)
T ss_pred EEeecccCC----------ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEe
Confidence 999999998 898888877543 22334567899999999999999999999999999999999988764
Q ss_pred cCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceeccc-CCeeeC
Q psy1758 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI-GSTICD 1208 (1527)
Q Consensus 1158 ~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~i-GdTi~~ 1208 (1527)
.+ -.||..|+-..| .++++|.||.-+-|.|.+++.+ ||-+-.
T Consensus 364 ~~------w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vle 406 (683)
T KOG1145|consen 364 KS------WCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVLE 406 (683)
T ss_pred ch------hhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEEE
Confidence 22 368988887776 5899999999999999998765 888743
No 102
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.95 E-value=5e-26 Score=287.98 Aligned_cols=244 Identities=30% Similarity=0.417 Sum_probs=194.6
Q ss_pred EEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEe-CCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVT-NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~-~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.|+++||+|||||||+++|++.. +......|+|++.+...+.. ++..++|||||||++|...+..++..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 68999999999999999998643 44455679999998877765 456799999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch-hHHHHHHHhhhcccccccC-CCCcEEEeeccCCCChhHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYG-GASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~-~~~~v~~iSAktg~gI~eL~ 223 (1527)
+|+++++++|+.+++..+...++| +|||+||+|+.+.+ ......++... ....+ ...|+|++||++|.|+++|+
T Consensus 82 Vda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~---l~~~~~~~~~ii~VSA~tG~gI~~L~ 158 (614)
T PRK10512 82 VACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAV---LREYGFAEAKLFVTAATEGRGIDALR 158 (614)
T ss_pred EECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHH---HHhcCCCCCcEEEEeCCCCCCCHHHH
Confidence 999999999999999999888988 57999999997532 22222222211 11111 24689999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCC
Q psy1758 224 ENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPS 301 (1527)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~ 301 (1527)
+.|.... ....+.+.|++..|.+++..+|.|+|+++++.+|+|++||.|.+.+ ...+|++|+.+ ++++.+|.||
T Consensus 159 ~~L~~~~---~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~-~~~v~~a~aG 234 (614)
T PRK10512 159 EHLLQLP---EREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQ-NQPTEQAQAG 234 (614)
T ss_pred HHHHHhh---ccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecC-CcCCCEEeCC
Confidence 9996432 2223356789999999999999999999999999999999998754 35799999654 5689999999
Q ss_pred cceEe--cC-CCC-CCCCCCeEEE
Q psy1758 302 IPVEI--QG-LTK-VPFSGEELFV 321 (1527)
Q Consensus 302 ~~v~I--~g-l~~-~~~~G~~~~~ 321 (1527)
+.+.+ .| ++. -..+|+++..
T Consensus 235 ~rval~l~g~~~~~~i~rGdvl~~ 258 (614)
T PRK10512 235 QRIALNIAGDAEKEQINRGDWLLA 258 (614)
T ss_pred CeEEEEecCCCChhhCCCcCEEeC
Confidence 88766 44 432 2378998763
No 103
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.95 E-value=3.7e-27 Score=258.95 Aligned_cols=190 Identities=28% Similarity=0.386 Sum_probs=152.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.||+++||+|||||||+++|++.+....+......+.+|..+.|++||+|+++....+++++++++++|||||.+|..++
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHH
Confidence 58999999999999999999987432221111123578999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
.+++..+|++++||||.+|+.+||++++..+.+.++| .|+|+||||+.... .+.+.+++...+..++... -++|+
T Consensus 83 ~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~--~~v~i 160 (195)
T cd01884 83 ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG--DNTPI 160 (195)
T ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc--cCCeE
Confidence 9999999999999999999999999999999999998 56889999996321 2345556777666555432 25799
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
+++||++|.+..+......++..|+++|....|+|
T Consensus 161 ipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 161 VRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEeeCccccCCCCCCcchhcHhHHHHHHHhCCCCC
Confidence 99999999854321111124679999998787765
No 104
>KOG0462|consensus
Probab=99.94 E-value=1.1e-26 Score=271.11 Aligned_cols=249 Identities=27% Similarity=0.365 Sum_probs=212.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc---------------ccccCCceeEEEEEEEEEeCC---eEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV---------------VFSEAGGITQHIGAYNVVTNH---GSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~---------------~~~~~~giT~~~~~~~~~~~~---~~i~~iDTPG~e~f 129 (1527)
+-.+++|+.|++||||||.++|..... ......|||+......+.|.+ +.+++||||||.+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 456899999999999999999854321 233557999999998888887 78999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEE
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFI 209 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 209 (1527)
.....+.+..||+++||+||.+|++.||...+..+...+..+|.|+||+|++.++++++..++.+....+. .+++
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~-----~~~i 213 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP-----AEVI 213 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc-----cceE
Confidence 99999999999999999999999999999999999999999999999999999999999888876554432 3799
Q ss_pred EeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc---ee-eeEe
Q psy1758 210 SISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA---SY-GRIR 285 (1527)
Q Consensus 210 ~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~---~~-~kVr 285 (1527)
.+|||+|.|+++++++|+.. +++++...+.|++++++++++|.++|.+++++|.+|.+++||.|.+-. .+ .++-
T Consensus 214 ~vSAK~G~~v~~lL~AII~r--VPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~v 291 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRR--VPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVV 291 (650)
T ss_pred EEEeccCccHHHHHHHHHhh--CCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEe
Confidence 99999999999999999854 566667788999999999999999999999999999999999987633 33 4666
Q ss_pred EeeccCCceeeecCCCcceEec-CCCCCC--CCCCeEEEeC
Q psy1758 286 SMLNENGKNILEAGPSIPVEIQ-GLTKVP--FSGEELFVIL 323 (1527)
Q Consensus 286 ~i~~~~g~~v~~a~~~~~v~I~-gl~~~~--~~G~~~~~~~ 323 (1527)
.+...+...+.+..+|+++.|. +++.+. .-||.++..+
T Consensus 292 gvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 292 GVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred EEeccCceeeeeecccccceeEecccccccccccceeeecc
Confidence 6778888888888888888664 455443 5688777554
No 105
>PRK10218 GTP-binding protein; Provisional
Probab=99.94 E-value=5.3e-26 Score=285.62 Aligned_cols=250 Identities=26% Similarity=0.285 Sum_probs=203.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc--cc--------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN--VV--------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~--~~--------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
-.+|+|+||+|||||||+++|.... +. .....|+|+......+.+++.+++|||||||++|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 3579999999999999999998632 21 1234689999999999999999999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc--ccccCCCCcEEE
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI--PEEYGGASPFIS 210 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~ 210 (1527)
+.++++.+|++++|+|+.++...|+..++..+...++|.++|+||+|+..++......++...... .......+|+++
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~ 164 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVY 164 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEE
Confidence 999999999999999999999999999999999999999999999999887766665554433211 111123479999
Q ss_pred eeccCCC----------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce
Q psy1758 211 ISAKTGV----------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS 280 (1527)
Q Consensus 211 iSAktg~----------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~ 280 (1527)
+||++|. |+..|++.|... ++.+..+.+.|+.++|+++..+++.|++++++|.+|+|+.||.|++.+.
T Consensus 165 ~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~--iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~ 242 (607)
T PRK10218 165 ASALNGIAGLDHEDMAEDMTPLYQAIVDH--VPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS 242 (607)
T ss_pred eEhhcCcccCCccccccchHHHHHHHHHh--CCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecC
Confidence 9999998 588888887643 2222234577899999999999999999999999999999999987433
Q ss_pred -----eeeEeEeeccC---CceeeecCCCcceEecCCCCCCCCCCeEEE
Q psy1758 281 -----YGRIRSMLNEN---GKNILEAGPSIPVEIQGLTKVPFSGEELFV 321 (1527)
Q Consensus 281 -----~~kVr~i~~~~---g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~ 321 (1527)
..||.+++... ..++.+|.+|+.+.|+|+++. ..||.+..
T Consensus 243 ~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GdTl~~ 290 (607)
T PRK10218 243 EGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL-NISDTVCD 290 (607)
T ss_pred CCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc-ccCcEEec
Confidence 36777776544 467889999999999999876 78988753
No 106
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.94 E-value=7.4e-27 Score=268.61 Aligned_cols=145 Identities=37% Similarity=0.519 Sum_probs=135.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccccccc------ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
++|||+|+||+|+|||||+++|++.+|.+.+.+.+. .+++|+.+.|++||+|+......++|++++++||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 369999999999999999999999999988877653 36899999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHH
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~ 1065 (1527)
|.+|..++.++++.+|++|+|+|++.|+..|+..+|+.+...++|+++|+||+|+.++++.++++++++.|
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l 151 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEEL 151 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877888887765
No 107
>PRK12736 elongation factor Tu; Reviewed
Probab=99.94 E-value=8.2e-26 Score=274.87 Aligned_cols=251 Identities=27% Similarity=0.309 Sum_probs=194.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|++... ......|+|++.....+.+++..++|||||||++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 3457899999999999999999975311 122357999999888888888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh-HH-HHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL-DR-IKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~-~~-~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+.++++.+|++++|+|+++|+.+|+.+++..+...++| +|+|+||+|+.+.+. .+ ...++.... ....+ ...+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l-~~~~~~~~~~ 168 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELL-SEYDFPGDDI 168 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHH-HHhCCCcCCc
Confidence 9999999999999999999999999999999999999999 688999999974221 11 111222111 01111 1347
Q ss_pred cEEEeeccCCC--------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEec
Q psy1758 207 PFISISAKTGV--------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAG 278 (1527)
Q Consensus 207 ~v~~iSAktg~--------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g 278 (1527)
|++++||++|. ++++|++.+.... .....+.+.|++..|.+++..++.|+|++++|.+|+|++||.|++.
T Consensus 169 ~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l--p~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~ 246 (394)
T PRK12736 169 PVIRGSALKALEGDPKWEDAIMELMDAVDEYI--PTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIV 246 (394)
T ss_pred cEEEeeccccccCCCcchhhHHHHHHHHHHhC--CCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEe
Confidence 99999999983 5677777775331 2233345678999999999999999999999999999999999874
Q ss_pred c----eeeeEeEeeccCCceeeecCCCcceEe--cCCCCC-CCCCCeEEE
Q psy1758 279 A----SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKV-PFSGEELFV 321 (1527)
Q Consensus 279 ~----~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~-~~~G~~~~~ 321 (1527)
+ ...+|++|+. +++.+.+|.||+.+.+ .|++.- -.+|+++..
T Consensus 247 p~~~~~~~~V~sI~~-~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~ 295 (394)
T PRK12736 247 GIKETQKTVVTGVEM-FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAK 295 (394)
T ss_pred cCCCCeEEEEEEEEE-CCEEccEECCCCEEEEEECCCcHHhCCcceEEec
Confidence 3 3579999976 4678999999998855 666432 268887754
No 108
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.94 E-value=4.3e-25 Score=279.04 Aligned_cols=296 Identities=25% Similarity=0.287 Sum_probs=222.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc---------------cccCCceeEEEEEEEEEeC---C--eEEEEEeCCChhhH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV---------------FSEAGGITQHIGAYNVVTN---H--GSITFLDTPGHEAF 129 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~---------------~~~~~giT~~~~~~~~~~~---~--~~i~~iDTPG~e~f 129 (1527)
.+|+++||+|||||||+++|...... .....|+|++.....+.|. + ..++|||||||++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 47999999999999999999764211 1123588888877776663 2 57999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEE
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFI 209 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 209 (1527)
..++.++++.||++|+|+|++++...++.+.|..+...++|+++|+||+|+.+.+......++..... + ...+++
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg----~-~~~~vi 158 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIG----L-DASEAI 158 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhC----C-CcceEE
Confidence 99999999999999999999999999999988888788999999999999976544433333322211 0 112589
Q ss_pred EeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeEe
Q psy1758 210 SISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSM 287 (1527)
Q Consensus 210 ~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i 287 (1527)
++||++|.|+++|+++|... ...+..+.+.|++++|++++.+++.|.+++++|.+|+|+.||.|.+.++ ..+|..+
T Consensus 159 ~vSAktG~GI~~Lle~I~~~--lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i 236 (595)
T TIGR01393 159 LASAKTGIGIEEILEAIVKR--VPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEV 236 (595)
T ss_pred EeeccCCCCHHHHHHHHHHh--CCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEE
Confidence 99999999999999999754 2333445678999999999999999999999999999999999977543 4577777
Q ss_pred eccCC--ceeeecCCCcceEe-cCCCCCC--CCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccc
Q psy1758 288 LNENG--KNILEAGPSIPVEI-QGLTKVP--FSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKE 362 (1527)
Q Consensus 288 ~~~~g--~~v~~a~~~~~v~I-~gl~~~~--~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (1527)
....+ .++.++.+|+.+.+ .|++++. ..||++....+. +.+ .+.. . +.
T Consensus 237 ~~~~~~~~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~--~~~--------------------~l~~----~-~~ 289 (595)
T TIGR01393 237 GVFTPKLTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNP--AKE--------------------PLPG----F-KE 289 (595)
T ss_pred EEecCCceECCEEcCCCEEEEeccccccCccCCCCEEECCCCc--ccc--------------------CCCC----C-cC
Confidence 54333 56788999997766 4665533 689988643221 000 0000 0 01
Q ss_pred cceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 363 KVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 363 ~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
..+.+..-+.+...+..+.|.++|.++..+...+.+-
T Consensus 290 ~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~ 326 (595)
T TIGR01393 290 VKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYE 326 (595)
T ss_pred CCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEE
Confidence 1244566788888899999999999998777777663
No 109
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.94 E-value=6.8e-26 Score=259.35 Aligned_cols=248 Identities=30% Similarity=0.386 Sum_probs=207.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc----------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV----------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR 133 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~----------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~ 133 (1527)
.+|+|+.|++||||||++.|...+.. .....|||+-.....+.|++.+|+++|||||.+|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 47999999999999999999765421 22345999988888999999999999999999999999
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc--ccccCCCCcEEEe
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI--PEEYGGASPFISI 211 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~i 211 (1527)
.|.++-.|+++|++||.+|.+|||+-.++.+...+.+.|||+||+|++++.++.+..+....... .....-.+|++..
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYA 165 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYA 165 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999888877665432211 1111124799999
Q ss_pred eccCCC----------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEe----
Q psy1758 212 SAKTGV----------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVA---- 277 (1527)
Q Consensus 212 SAktg~----------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~---- 277 (1527)
||+.|. ++..||+.|... .+.+..+.+.|++.++..--++.+.|++..++|.+|++++|+.+..
T Consensus 166 S~~~G~a~~~~~~~~~~m~pLfe~I~~h--vp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~ 243 (603)
T COG1217 166 SARNGTASLDPEDEADDMAPLFETILDH--VPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSD 243 (603)
T ss_pred eccCceeccCccccccchhHHHHHHHHh--CCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCC
Confidence 999884 788899998754 3455566788999999998999999999999999999999999865
Q ss_pred c-ceeeeEeEeeccCC---ceeeecCCCcceEecCCCCCCCCCCeEE
Q psy1758 278 G-ASYGRIRSMLNENG---KNILEAGPSIPVEIQGLTKVPFSGEELF 320 (1527)
Q Consensus 278 g-~~~~kVr~i~~~~g---~~v~~a~~~~~v~I~gl~~~~~~G~~~~ 320 (1527)
| ...+||..++...| .++.+|.+|+.|+|+|+.++ .-||.+.
T Consensus 244 g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~-~igdTi~ 289 (603)
T COG1217 244 GTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI-NIGDTIC 289 (603)
T ss_pred CcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccc-ccccccc
Confidence 2 24689999988887 45789999999999999876 4555444
No 110
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=99.94 E-value=6.6e-27 Score=231.67 Aligned_cols=112 Identities=31% Similarity=0.583 Sum_probs=106.7
Q ss_pred cccccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhcc
Q psy1758 538 ECERLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKK 617 (1527)
Q Consensus 538 ecgr~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~ 617 (1527)
+..|..|+++.++++|+++++++++||++++||||+|++|+||++|+||||++|++..+++++++|++++||||+.||++
T Consensus 2 ~~~R~~Rv~~~i~~eis~il~~~i~dp~~~~vtVt~V~lS~Dl~~AkVyvs~~~~~~~~~~~l~~L~~~~g~iR~~l~k~ 81 (114)
T TIGR00082 2 ASYRKERVESDIIREINRILIREIKDPRVGMLTVTKVEVSKDLQHAKVFVDCYGDEEAIDRVVKALNKAKGFIRSLLGQA 81 (114)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEeEEEECCCCCEEEEEEEECCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44578899999999999999999999999999999999999999999999999987777899999999999999999999
Q ss_pred cccccCCeEEEEeccchhhHHHHHHHHhhccc
Q psy1758 618 LHIHTLPILNFFYDNSIENAMMISKLIDGIKY 649 (1527)
Q Consensus 618 l~lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~ 649 (1527)
|+||++|+|+|+||+|+|++.+|++||+++++
T Consensus 82 l~lR~~P~L~F~~D~s~e~~~~i~~ll~~i~~ 113 (114)
T TIGR00082 82 MRLRKTPELHFVKDNSLDKGMRIENLINSLKK 113 (114)
T ss_pred CCceECCEEEEEecCcHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999864
No 111
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.94 E-value=5.1e-26 Score=251.01 Aligned_cols=194 Identities=65% Similarity=1.030 Sum_probs=173.9
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
.+|||+++|++|+|||||+++|++.++.+.....+..+++|..+.|+++|+|+..+...+.++++++++||||||.+|..
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 80 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG 80 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH
Confidence 37999999999999999999999887777766666678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+..+++.+|++++|+|+++++.+++..++..+...++|+++|+||+|+...+.+...+++.+.+..++....+.++|++
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 160 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEE
Confidence 99999999999999999999999999888888888899999999999998777777788888877666555556678999
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
++||++|++..+......++.+|++.|.+++|.|
T Consensus 161 ~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 161 YASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EeehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 9999999987777777789999999999999987
No 112
>PRK12735 elongation factor Tu; Reviewed
Probab=99.94 E-value=3e-25 Score=270.05 Aligned_cols=251 Identities=28% Similarity=0.323 Sum_probs=193.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcc-------cc---------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKT-------NV---------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~-------~~---------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|++. .+ ......|+|++.....+.+++.+++|+|||||++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 34578999999999999999999752 11 122357999999888888888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEEcccCCcchh--HHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI-VAINKIDKLDINL--DRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiI-vviNKiDl~~~~~--~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+.+++..+|++++|+|+.++...|+.+++..+...++|.+ +|+||+|+.+... +....++..... ...+ +..+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~-~~~~~~~~~ 168 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS-KYDFPGDDT 168 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH-HcCCCcCce
Confidence 999999999999999999999999999999999999999955 6899999974211 111112211111 1111 1347
Q ss_pred cEEEeeccCCC----------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEE
Q psy1758 207 PFISISAKTGV----------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVV 276 (1527)
Q Consensus 207 ~v~~iSAktg~----------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv 276 (1527)
+++++||++|. ++.+|++.|.... .......+.|++..|.+++..++.|+|++++|.+|+|++||.|.
T Consensus 169 ~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~--~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~ 246 (396)
T PRK12735 169 PIIRGSALKALEGDDDEEWEAKILELMDAVDSYI--PEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVE 246 (396)
T ss_pred eEEecchhccccCCCCCcccccHHHHHHHHHhcC--CCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEE
Confidence 99999999995 6777888775431 12233456789999999999999999999999999999999998
Q ss_pred ecc----eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCCeEEE
Q psy1758 277 AGA----SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGEELFV 321 (1527)
Q Consensus 277 ~g~----~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~~~~~ 321 (1527)
+.+ ...+|++|.. +++.+.+|.||+.+.+ .|++.-. .+|+++..
T Consensus 247 i~p~~~~~~~~VksI~~-~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~ 297 (396)
T PRK12735 247 IVGIKETQKTTVTGVEM-FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAK 297 (396)
T ss_pred EecCCCCeEEEEEEEEE-CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEc
Confidence 754 3578999975 4678999999998777 5554322 68887764
No 113
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=9.8e-26 Score=247.94 Aligned_cols=256 Identities=27% Similarity=0.355 Sum_probs=197.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe------------------c
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------N 983 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------~ 983 (1527)
-.||+.+||+|||||||+.+|..- -.|.+..|-+|||||...++.... .
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~ 76 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCP 76 (415)
T ss_pred ceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCC
Confidence 469999999999999999999543 127888999999999877654322 0
Q ss_pred --------CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-CChhHHHHHHHHHHcCCccEEE-EeccCCCCCC
Q psy1758 984 --------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGFKPIVV-VNKIDRSNAR 1053 (1527)
Q Consensus 984 --------~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-~~~qt~~~~~~~~~~glp~Ivv-iNKiD~~~a~ 1053 (1527)
-+++.|+|.|||.-+...|.++....|+|||||+|++. ++|||++|+..+.-.|++.|++ -||+|+..
T Consensus 77 ~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~-- 154 (415)
T COG5257 77 NCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS-- 154 (415)
T ss_pred CCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec--
Confidence 14789999999999999999999999999999999986 8999999999999999887655 69999965
Q ss_pred hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeec--
Q psy1758 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY-- 1131 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~-- 1131 (1527)
.++.++.-++....+. ....-+.|++++||..+. |++.|+++|.+++|.|..|.+.|++|+|...+-
T Consensus 155 ~E~AlE~y~qIk~Fvk-Gt~Ae~aPIIPiSA~~~~----------NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVN 223 (415)
T COG5257 155 RERALENYEQIKEFVK-GTVAENAPIIPISAQHKA----------NIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVN 223 (415)
T ss_pred HHHHHHHHHHHHHHhc-ccccCCCceeeehhhhcc----------CHHHHHHHHHHhCCCCccCCCCCceEEEEeecccC
Confidence 3444444333322222 223345799999999998 999999999999999999999999999977553
Q ss_pred ------cccCceEEEEEeecCccccCCEEEEecCC----CCC----cCcceeeeEEEeecCceeEeeeeecCCEEEE-ec
Q psy1758 1132 ------SSYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLI-TG 1196 (1527)
Q Consensus 1132 ------d~~~G~v~~grV~sG~lk~Gd~v~~~~~~----~g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai-~g 1196 (1527)
+...|-+.-|.+.+|.++.||++.+.|.- +|+ ....+|.+|+ . ...++++|.+|-.++| ++
T Consensus 224 kPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~---a-g~~~~~ea~PGGLvgvGT~ 299 (415)
T COG5257 224 KPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQ---A-GGEDVEEARPGGLVGVGTK 299 (415)
T ss_pred CCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEE---e-CCeeeeeccCCceEEEecc
Confidence 34578889999999999999999986541 121 1112455443 1 2468999999999987 56
Q ss_pred cee-cccCCeee
Q psy1758 1197 IEE-ICIGSTIC 1207 (1527)
Q Consensus 1197 l~~-~~iGdTi~ 1207 (1527)
++- +..+|-|+
T Consensus 300 lDP~ltKaD~L~ 311 (415)
T COG5257 300 LDPTLTKADALV 311 (415)
T ss_pred cCcchhhhhhhc
Confidence 652 33355543
No 114
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.94 E-value=3e-25 Score=270.38 Aligned_cols=254 Identities=26% Similarity=0.276 Sum_probs=189.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc----------------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN----------------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~----------------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
.+..+|+++||+|||||||+++|.+.. .......|+|++.....+..++.+++|||||||++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 345789999999999999999997320 1223347999999888888888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEEcccCCcchh--HHHHHHHhhhcccccccCCCCc
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI-VAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASP 207 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiI-vviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ 207 (1527)
..+.+++..+|++++|+|+++|..+|+.+++..+...++|.+ +|+||+|+.+... +....++..........+..+|
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 169 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTP 169 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCcc
Confidence 999999999999999999999999999999999999999965 6899999975321 1111122111111100113479
Q ss_pred EEEeeccCCC-ChhHHHHHHHHHHH----HH-hhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--
Q psy1758 208 FISISAKTGV-GINKLLENISLQAE----IL-ELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA-- 279 (1527)
Q Consensus 208 v~~iSAktg~-gI~eL~~~l~~~~~----~~-~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~-- 279 (1527)
++++||++|. |..++.+.+....+ .. ....+.+.|++..|.+++..++.|+|++++|.+|+|++||.|.+.+
T Consensus 170 ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~ 249 (394)
T TIGR00485 170 IIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLK 249 (394)
T ss_pred EEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCC
Confidence 9999999985 44433332221111 11 1223356789999999999999999999999999999999998743
Q ss_pred --eeeeEeEeeccCCceeeecCCCcceEe--cCCCCC-CCCCCeEEE
Q psy1758 280 --SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKV-PFSGEELFV 321 (1527)
Q Consensus 280 --~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~-~~~G~~~~~ 321 (1527)
...+|++|+.+ ++++.+|.+|+.+.+ .|++.. -.+|+++..
T Consensus 250 ~~~~~~VksI~~~-~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~ 295 (394)
T TIGR00485 250 DTRKTTVTGVEMF-RKELDEGRAGDNVGLLLRGIKREEIERGMVLAK 295 (394)
T ss_pred CCcEEEEEEEEEC-CeEEEEECCCCEEEEEeCCccHHHCCccEEEec
Confidence 35789999764 578999999998865 565432 267887753
No 115
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=4.1e-26 Score=262.03 Aligned_cols=247 Identities=28% Similarity=0.356 Sum_probs=194.3
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc---------------ccccCCceeEEEEEEEEEeCC-----eEEEEEeCCChhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV---------------VFSEAGGITQHIGAYNVVTNH-----GSITFLDTPGHEA 128 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~---------------~~~~~~giT~~~~~~~~~~~~-----~~i~~iDTPG~e~ 128 (1527)
-.+.+|+.|.+||||||.++|..... ......|||+......+.+.. +.++|+|||||.+
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 34689999999999999999965322 234557999998888776643 5789999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcE
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
|.....|++..|.+++||+||+.|+..||......+...+..+|-|+||+||+.++++++.+++........ ...
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~-----~da 163 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA-----SDA 163 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc-----chh
Confidence 999999999999999999999999999999999999999999999999999999999999988765543322 357
Q ss_pred EEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEe---cceeeeEe
Q psy1758 209 ISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVA---GASYGRIR 285 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~---g~~~~kVr 285 (1527)
+.+|||+|.||++++++|+.. +++++.+.+.|.+++++++++|..+|.|+.++|.+|++++||.+.+ |..+ .|.
T Consensus 164 v~~SAKtG~gI~~iLe~Iv~~--iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y-~V~ 240 (603)
T COG0481 164 VLVSAKTGIGIEDVLEAIVEK--IPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEY-EVD 240 (603)
T ss_pred eeEecccCCCHHHHHHHHHhh--CCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEE-EEE
Confidence 889999999999999999844 5666677889999999999999999999999999999999996644 1111 111
Q ss_pred --EeeccCCceeeecCCCcceE-ecCCCCCC--CCCCeEEEeC
Q psy1758 286 --SMLNENGKNILEAGPSIPVE-IQGLTKVP--FSGEELFVIL 323 (1527)
Q Consensus 286 --~i~~~~g~~v~~a~~~~~v~-I~gl~~~~--~~G~~~~~~~ 323 (1527)
.++...........+|+.+- ++|++++. ..||.+...+
T Consensus 241 evGvftP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~ 283 (603)
T COG0481 241 EVGIFTPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLAS 283 (603)
T ss_pred EEeeccCCccccccccCCceeEEEEeeeecccCcccceEeccC
Confidence 12233334444555565543 34555543 4566555333
No 116
>PRK13818 ribosome-binding factor A; Provisional
Probab=99.94 E-value=1.3e-26 Score=231.24 Aligned_cols=112 Identities=33% Similarity=0.532 Sum_probs=104.3
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCCh-hhHHHHHHHHHHhhHHHHHHHhcccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKD-ISIKNILDNLSKAKNYIRFKLSKKLH 619 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~-~~~~~~~~~l~~~~g~ir~~l~~~l~ 619 (1527)
|..|++++|+++|+.+++++++||++++||||+|+||+||++|+||||++|++ ..+++++++|++|+||||+.||++|+
T Consensus 4 R~~Rv~~~i~reis~ii~~ei~Dprl~~vtVt~V~lS~Dl~~AkVyvs~~~~~~~~~~~~~~~L~~a~g~iR~~la~~l~ 83 (121)
T PRK13818 4 RIGRVEGEILRELTKILRKNIRDPRLSDVTITAVECTNDLSYATVYYSLLTEDEAKEKEVQEGLEKAKGMMRHLLGQTLT 83 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCcCceEEeEEEECCCCCEEEEEEEeCCCchhHHHHHHHHHHHhHHHHHHHHHhhCC
Confidence 66789999999999999999999999999999999999999999999999844 34567999999999999999999999
Q ss_pred cccCCeEEEEeccchhhHHHHHHHHhhcccccc
Q psy1758 620 IHTLPILNFFYDNSIENAMMISKLIDGIKYCMQ 652 (1527)
Q Consensus 620 lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~~~ 652 (1527)
||++|+|+|+||+|+|++.+|++||++++.+.+
T Consensus 84 lR~~P~L~F~~D~s~e~~~~I~~Ll~~i~~~~~ 116 (121)
T PRK13818 84 VYKVPELIFKRDNSVAYGSKIDRLIAEVKKQDQ 116 (121)
T ss_pred CeECCEEEEEeCCChHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999976533
No 117
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.2e-25 Score=267.34 Aligned_cols=252 Identities=27% Similarity=0.314 Sum_probs=204.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---CeEEEEEeCCCCCCc
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADF 998 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~iniiDTPGh~df 998 (1527)
.+-|+|+||+|||||||++.+-..+-... -.-|||-....+.+.++ ...+.|+|||||+-|
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~----------------EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF 68 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAG----------------EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF 68 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccc----------------cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH
Confidence 35799999999999999999954321111 12478888888888884 468999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
...-.|+.+.+|.|+||||+.+|++|||.+.++.++..+.|++|++||||+++++++.+..++.+. .+....+.-+..
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~--gl~~E~~gg~v~ 146 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY--GLVPEEWGGDVI 146 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc--CCCHhhcCCceE
Confidence 999999999999999999999999999999999999999999999999999999999888887663 333344445578
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhc--CCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYV--PVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l--p~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
++++||++|. |+++||+.+.-.. -.-..+++.|....|....-+.+.|.++..-|++|+|++||.|.+
T Consensus 147 ~VpvSA~tg~----------Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~ 216 (509)
T COG0532 147 FVPVSAKTGE----------GIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVA 216 (509)
T ss_pred EEEeeccCCC----------CHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEE
Confidence 9999999999 9999999886432 133456788999999999999999999999999999999999998
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecc-cCCeeeCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC-IGSTICDPS 1210 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~-iGdTi~~~~ 1210 (1527)
... ..+|..++.-.| .++..+.++--+.+.|++++. .||.....+
T Consensus 217 g~~------~g~I~t~v~~~~---~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~ 262 (509)
T COG0532 217 GGE------YGRVRTMVDDLG---KPIKEAGPSKPVEILGLSEVPAAGDVFIVVK 262 (509)
T ss_pred ccC------CCceEEeehhcC---CCccccCCCCCeEEeccccccccCceEEecC
Confidence 655 245666554443 567778877777788887755 366665433
No 118
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.94 E-value=1.3e-25 Score=276.70 Aligned_cols=252 Identities=30% Similarity=0.403 Sum_probs=190.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+|+++||+|||||||+++|..... .....+|+|++.....+++++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 346799999999999999999974321 1122579999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC--CCcHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhHH---HHH
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD--GVMPQTREAIAHAKISGV-PLIVAINKIDKLDINLDR---IKQ 190 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~--g~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~~---~~~ 190 (1527)
+++|||||||++|...+..+++.+|++++|+|+++ +...++.+++..+...++ |+++|+||+|+.+.+.+. ...
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~ 164 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKE 164 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHH
Confidence 99999999999999888888999999999999999 889999999988888887 489999999997633222 122
Q ss_pred HHhhhcccccccC-CCCcEEEeeccCCCChhHHHHHH--------HHH-HHHHhhcCCCCCCCceEEEEEeecCCCceEE
Q psy1758 191 DLISEQVIPEEYG-GASPFISISAKTGVGINKLLENI--------SLQ-AEILELKAPVTTPAKGVIIESRLDKGKGPVA 260 (1527)
Q Consensus 191 ~l~~~~~~~~~~~-~~~~v~~iSAktg~gI~eL~~~l--------~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~ 260 (1527)
++..... ...+. ..++++++||++|.|++++.+.+ ... ..+.....+.+.|++..|.+++..++.|+|+
T Consensus 165 ~i~~~l~-~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv 243 (425)
T PRK12317 165 EVSKLLK-MVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVP 243 (425)
T ss_pred HHHHHHH-hhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEE
Confidence 2211110 00111 23689999999999999854322 111 1111222334678999999999999999999
Q ss_pred EEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEec--CCCCCC-CCCCeEEE
Q psy1758 261 TVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVP-FSGEELFV 321 (1527)
Q Consensus 261 ~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~-~~G~~~~~ 321 (1527)
+++|.+|+|++||.|.+++ ...+|++|..+ ++.+..|.||+.+.+. +++... .+|+++..
T Consensus 244 ~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~ 308 (425)
T PRK12317 244 VGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH-HEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGH 308 (425)
T ss_pred EEEEeeccEecCCEEEECCCCCeEEEEEEEEC-CcccCEECCCCeEEEEECCCCHHHccCccEecC
Confidence 9999999999999999865 45799999765 5679999999988663 443211 57887653
No 119
>KOG0459|consensus
Probab=99.94 E-value=3.5e-26 Score=257.96 Aligned_cols=284 Identities=25% Similarity=0.322 Sum_probs=226.2
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEe
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEY 982 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~ 982 (1527)
++....|+.++||+|+||||+-+.+++++|.+.+.. .-.+|+||++..||++|-|+....+.|+.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 346778999999999999999999999988776321 12248999999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCCh-------hHHHHHHHHHHcCCccE-EEEeccCCCCC--
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP-------QTRFVTRKALKLGFKPI-VVVNKIDRSNA-- 1052 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~-------qt~~~~~~~~~~glp~I-vviNKiD~~~a-- 1052 (1527)
...+++|.|+|||..|..+|..++++||.++||++|..|.+. ||+++..+++..|+..+ +++||||-+..
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 999999999999999999999999999999999999876543 99999999999998875 56899998754
Q ss_pred ---ChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcc---cccCCChhHHHHHHhhcCCCCCCCCCCceeEE
Q psy1758 1053 ---RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK---ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI 1126 (1527)
Q Consensus 1053 ---~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~---~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V 1126 (1527)
++++..+.+...+..++.... -+.-.+++|+.+|....+.. -.+.-...+|..+.+ +|.+..+.++||++.|
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~-~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI 312 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPK-PDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPV 312 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCC-CCceeeecccccccchhhcccccCCcccCCccceehhc-cCcccccCCCCEEeeh
Confidence 345555555555554443322 23447889999997433222 122223345666644 8888889999999999
Q ss_pred EeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE--Eecce--eccc
Q psy1758 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL--ITGIE--EICI 1202 (1527)
Q Consensus 1127 ~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva--i~gl~--~~~i 1202 (1527)
.+-+.| .|++.+|+|.||++++||++.++|. .....|.+|+.- .++++.+.+||.+- +.|++ ++..
T Consensus 313 ~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPn----k~~veV~~I~~d----dvE~~~~~pGenvk~rlkgieeedi~~ 382 (501)
T KOG0459|consen 313 ANKYKD--MGTVVGGKVESGSIKKGQQLVVMPN----KTNVEVLGIYSD----DVETDRVAPGENVKLRLKGIEEEDISP 382 (501)
T ss_pred hhhccc--cceEEEEEecccceecCCeEEEccC----CcceEEEEEecc----cceeeeccCCcceEEEecccchhhccC
Confidence 877665 5899999999999999999999987 345677777643 57899999999985 56875 6888
Q ss_pred CCeeeCCCCCC
Q psy1758 1203 GSTICDPSKPN 1213 (1527)
Q Consensus 1203 GdTi~~~~~~~ 1213 (1527)
|-.||++.++.
T Consensus 383 GfiL~~~~n~~ 393 (501)
T KOG0459|consen 383 GFILCSPNNPC 393 (501)
T ss_pred ceEEecCCCcc
Confidence 99999998864
No 120
>PRK13815 ribosome-binding factor A; Provisional
Probab=99.94 E-value=1.6e-26 Score=230.84 Aligned_cols=110 Identities=33% Similarity=0.452 Sum_probs=105.6
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhccccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHI 620 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~l 620 (1527)
|..|+++.|+++|+++++++++||++.+||||+|+||+||++|+||||+++++..+++++++|++|+||||+.||++|+|
T Consensus 4 R~~Rv~~~Ir~eis~il~~~i~dprl~~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~l 83 (122)
T PRK13815 4 RSEKVAEAIHELISGLLVKGLKDPRIGFVTITGVKVTDDLHLATIYFTVIGDDEAKKSTEAGLNSARGFIRKELGKVLRM 83 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCCCceEEeEEEECCCCCEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 67789999999999999999999999999999999999999999999999877777889999999999999999999999
Q ss_pred ccCCeEEEEeccchhhHHHHHHHHhhcccc
Q psy1758 621 HTLPILNFFYDNSIENAMMISKLIDGIKYC 650 (1527)
Q Consensus 621 r~~P~l~F~~D~s~~~~~~i~~ll~~i~~~ 650 (1527)
|++|+|+|+||+|+|++.+|++||++++.+
T Consensus 84 R~~PeL~F~~D~s~e~~~~I~~lL~~i~~~ 113 (122)
T PRK13815 84 RYAPELIFKYDESQEYGNRIDSLLKEIGTE 113 (122)
T ss_pred eECCEEEEEECCChHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999865
No 121
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.94 E-value=3.9e-25 Score=271.41 Aligned_cols=248 Identities=27% Similarity=0.330 Sum_probs=192.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+|+++||+|+|||||+.+|..... ......|+|++.....+.+++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 346799999999999999998864210 1223469999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-------cHHHHHHHHHHHHcCCC-EEEEEEcccCCc--ch--
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-------MPQTREAIAHAKISGVP-LIVAINKIDKLD--IN-- 184 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-------~~qt~e~i~~~~~~~vp-iIvviNKiDl~~--~~-- 184 (1527)
.++|+|||||++|...+..+++.+|++++|+|+++|+ ..||.+++..+...++| +|+|+||+|+.. .+
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~ 165 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQE 165 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHH
Confidence 9999999999999999999999999999999999987 47999999999999998 679999999542 22
Q ss_pred -hHHHHHHHhhhcccccccC-CCCcEEEeeccCCCChhH------------HHHHHHHHHHHHhhcCCCCCCCceEEEEE
Q psy1758 185 -LDRIKQDLISEQVIPEEYG-GASPFISISAKTGVGINK------------LLENISLQAEILELKAPVTTPAKGVIIES 250 (1527)
Q Consensus 185 -~~~~~~~l~~~~~~~~~~~-~~~~v~~iSAktg~gI~e------------L~~~l~~~~~~~~~~~~~~~p~~~~v~~~ 250 (1527)
.+++..++...... ..+. ..+|++++||.+|.|+.+ |++.|.. +.....+.+.|++..|.++
T Consensus 166 ~~~~i~~~i~~~l~~-~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~---~~~~~~~~~~p~r~~I~~v 241 (446)
T PTZ00141 166 RYDEIKKEVSAYLKK-VGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT---LEPPKRPVDKPLRLPLQDV 241 (446)
T ss_pred HHHHHHHHHHHHHHh-cCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC---CCCCCcCCCCCeEEEEEEE
Confidence 23333333322111 1111 247999999999999974 5555532 1222334567899999999
Q ss_pred eecCCCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcceEecCCCCCC----CCCCeEEE
Q psy1758 251 RLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPVEIQGLTKVP----FSGEELFV 321 (1527)
Q Consensus 251 ~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~----~~G~~~~~ 321 (1527)
+..++.|++++++|.+|+|++||.|++.+. ..+|++|..+ +..+.+|.+|+.+.+. |+.+. .+|+++..
T Consensus 242 ~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i~-L~~i~~~~v~rG~vl~~ 316 (446)
T PTZ00141 242 YKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH-HEQLAEAVPGDNVGFN-VKNVSVKDIKRGYVASD 316 (446)
T ss_pred EecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec-CcccCEECCCCEEEEE-ECCCCHHHcCCceEEec
Confidence 999999999999999999999999998764 5799999765 4678999999888774 33321 57887764
No 122
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.93 E-value=5.6e-25 Score=269.77 Aligned_cols=247 Identities=25% Similarity=0.306 Sum_probs=190.7
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+|+++||+|+|||||+.+|..... ......|+|++.....+.++++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 346799999999999999998853210 1122359999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEEcccCCcc-----
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM-------PQTREAIAHAKISGVP-LIVAINKIDKLDI----- 183 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~-------~qt~e~i~~~~~~~vp-iIvviNKiDl~~~----- 183 (1527)
.++|+|||||++|...+..+++.+|++|+|+|+++|.. .|+.+++..+...++| +|+|+||+|+.+.
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~ 165 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKA 165 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHH
Confidence 99999999999999999999999999999999999743 7999999999999996 7889999998732
Q ss_pred hhHHHHHHHhhhcccccccC---CCCcEEEeeccCCCChhH------------HHHHHHHHHHHHhhcCCCCCCCceEEE
Q psy1758 184 NLDRIKQDLISEQVIPEEYG---GASPFISISAKTGVGINK------------LLENISLQAEILELKAPVTTPAKGVII 248 (1527)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~---~~~~v~~iSAktg~gI~e------------L~~~l~~~~~~~~~~~~~~~p~~~~v~ 248 (1527)
..++...++... ....+ ..++++++||++|+|+.+ |++.|. .+.....+.+.|++..|.
T Consensus 166 ~~~~i~~ei~~~---l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~---~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 166 RYDEIVKEVSSY---LKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALD---QINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred HHHHHHHHHHHH---HHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHh---hcCCCccccCCCcEEEEE
Confidence 122223332221 11111 246899999999999864 444442 122333445779999999
Q ss_pred EEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcceEec--CCCCC-CCCCCeEEE
Q psy1758 249 ESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKV-PFSGEELFV 321 (1527)
Q Consensus 249 ~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~-~~~G~~~~~ 321 (1527)
+++..++.|+|++++|.+|+|++||.|++++. ..+|++|..+ +..+.+|.||+.+.+. ++... -.+|+++.-
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~-~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~ 316 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH-HESLQEALPGDNVGFNVKNVAVKDLKRGYVASN 316 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC-CeEeCEecCCCeEEEEECCCCHhhCCCccEEcc
Confidence 99999999999999999999999999999875 5799999764 5689999999877664 33221 268887653
No 123
>PLN03127 Elongation factor Tu; Provisional
Probab=99.93 E-value=6.6e-25 Score=268.84 Aligned_cols=252 Identities=29% Similarity=0.319 Sum_probs=192.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcc------c----------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKT------N----------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~------~----------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|.+. . ......+|+|++.....+++++.+++|+|||||.+|.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 45578999999999999999999632 1 1123347999999999999988999999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh--HHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL--DRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+..++..+|++++|+|++++..+|+.+++..+...++| +|+++||+|+.+.+. +....++..... ...+ ...+
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~-~~~~~~~~v 217 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLS-FYKFPGDEI 217 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH-HhCCCCCcc
Confidence 9999999999999999999999999999999999999999 578999999975221 111112211111 1112 2357
Q ss_pred cEEEeecc---CCCC-------hhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEE
Q psy1758 207 PFISISAK---TGVG-------INKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVV 276 (1527)
Q Consensus 207 ~v~~iSAk---tg~g-------I~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv 276 (1527)
|++++||. +|.| +.+|++.+.... .......+.|++..|.+++..++.|+|++++|.+|++++||.|.
T Consensus 218 piip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l--p~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~ 295 (447)
T PLN03127 218 PIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI--PEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVE 295 (447)
T ss_pred eEEEeccceeecCCCcccccchHHHHHHHHHHhC--CCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEE
Confidence 99999886 4555 667777775331 12333456789999999999999999999999999999999996
Q ss_pred ec------ceeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCCeEEEe
Q psy1758 277 AG------ASYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGEELFVI 322 (1527)
Q Consensus 277 ~g------~~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~~~~~~ 322 (1527)
+. ....+|++|..+ ++.+.+|.+|+.+.+ .|++... .+|+++...
T Consensus 296 i~p~~~~g~~~~~VksI~~~-~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 296 IVGLRPGGPLKTTVTGVEMF-KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred EcccCCCCcEEEEEEEEEEE-CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 53 245799999765 457889999987766 5554322 689887643
No 124
>PLN03126 Elongation factor Tu; Provisional
Probab=99.93 E-value=7.1e-25 Score=269.57 Aligned_cols=251 Identities=27% Similarity=0.314 Sum_probs=192.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc----------------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN----------------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~----------------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|.... .......|+|++.....+.+++.+++|||||||++|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 345689999999999999999998521 1224447999999998898999999999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch--hHHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDIN--LDRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+..++..+|++++|+|+.+|..+|+.+++..+...++| +|+++||+|+.+.+ .+....++.... ....| ...+
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l-~~~g~~~~~~ 237 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL-SSYEFPGDDI 237 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH-HhcCCCcCcc
Confidence 9999999999999999999999999999999999999999 78899999997522 111111222111 11111 1357
Q ss_pred cEEEeeccCCCCh------------------hHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccE
Q psy1758 207 PFISISAKTGVGI------------------NKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268 (1527)
Q Consensus 207 ~v~~iSAktg~gI------------------~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~ 268 (1527)
|++++||.+|.++ ..|++.|... ...+..+.+.|++..|.+++..++.|+|++++|.+|+
T Consensus 238 ~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~--~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~ 315 (478)
T PLN03126 238 PIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSY--IPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGT 315 (478)
T ss_pred eEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHh--CCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCe
Confidence 9999999998543 3344444321 1112233567899999999999999999999999999
Q ss_pred EEeccEEEecce----eeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCCeEEE
Q psy1758 269 LRCSDIVVAGAS----YGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGEELFV 321 (1527)
Q Consensus 269 l~~gd~vv~g~~----~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~~~~~ 321 (1527)
|++||.|.+++. ..+|++|+.+ +.++.+|.||+.+.+ .|++... .+|+++..
T Consensus 316 i~~Gd~v~i~p~~~~~~~~VksI~~~-~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~ 374 (478)
T PLN03126 316 VKVGETVDIVGLRETRSTTVTGVEMF-QKILDEALAGDNVGLLLRGIQKADIQRGMVLAK 374 (478)
T ss_pred EecCCEEEEecCCCceEEEEEEEEEC-CeECCEEeCCceeeeeccCCcHHHcCCccEEec
Confidence 999999998653 4789999765 568899999988777 4554322 68887764
No 125
>CHL00071 tufA elongation factor Tu
Probab=99.93 E-value=6.4e-25 Score=268.35 Aligned_cols=250 Identities=29% Similarity=0.332 Sum_probs=190.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 131 (1527)
...+|+++||+|||||||+++|++... .....+|+|++.....+.+++.+++|+|||||.+|..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~ 90 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVK 90 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHH
Confidence 446899999999999999999986421 2233479999998888888888999999999999999
Q ss_pred HHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh--HHHHHHHhhhccccccc-CCCCc
Q psy1758 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL--DRIKQDLISEQVIPEEY-GGASP 207 (1527)
Q Consensus 132 ~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~-~~~~~ 207 (1527)
.+.+++..+|++++|+|+.+++.+|+.+++..+...++| +|+|+||+|+.+.+. +....++..... ...+ ...+|
T Consensus 91 ~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~ 169 (409)
T CHL00071 91 NMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLS-KYDFPGDDIP 169 (409)
T ss_pred HHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH-HhCCCCCcce
Confidence 999999999999999999999999999999999999999 778999999975321 111112221111 1111 12479
Q ss_pred EEEeeccCCCCh------------------hHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEE
Q psy1758 208 FISISAKTGVGI------------------NKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTL 269 (1527)
Q Consensus 208 v~~iSAktg~gI------------------~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l 269 (1527)
++++||.+|.|+ ..|++.|... ......+.+.|++..|.+++..++.|+|++++|.+|++
T Consensus 170 ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~--~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l 247 (409)
T CHL00071 170 IVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSY--IPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTV 247 (409)
T ss_pred EEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhh--CCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEE
Confidence 999999999743 4455554322 11122345678999999999999999999999999999
Q ss_pred EeccEEEe-c---ceeeeEeEeeccCCceeeecCCCcceEec--CCCCC-CCCCCeEEE
Q psy1758 270 RCSDIVVA-G---ASYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKV-PFSGEELFV 321 (1527)
Q Consensus 270 ~~gd~vv~-g---~~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~-~~~G~~~~~ 321 (1527)
++||.|.+ + ....+|++|+.+ ++++.+|.||+.+.+. |++.. -.+|+++..
T Consensus 248 ~~Gd~v~i~p~~~~~~~~VksI~~~-~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~ 305 (409)
T CHL00071 248 KVGDTVEIVGLRETKTTTVTGLEMF-QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAK 305 (409)
T ss_pred eeCCEEEEeeCCCCcEEEEEEEEEc-CcCCCEECCCceeEEEEcCCCHHHcCCeEEEec
Confidence 99999975 2 235799999765 4578999999888554 55432 268887753
No 126
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.2e-26 Score=226.46 Aligned_cols=111 Identities=37% Similarity=0.645 Sum_probs=105.5
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecC-ChhhHHHHHHHHHHhhHHHHHHHhcccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFN-KDISIKNILDNLSKAKNYIRFKLSKKLH 619 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~-~~~~~~~~~~~l~~~~g~ir~~l~~~l~ 619 (1527)
|..|..++++++|+++++++++||++++++||+|+||+||+||+||||++| .+.+.++++++|++|+||||+.|+++++
T Consensus 6 R~~rv~e~i~~~l~~il~~eikDprl~~~~Vt~V~vS~Dl~~A~Vyvt~l~~~~~~~~~~~~~L~~A~g~ir~~l~~~~~ 85 (118)
T COG0858 6 RAKRVAEQIQKELAEILQREIKDPRLGLVTVTDVEVSKDLSHAKVYVTVLGDEESSKAEILAALNKAKGFIRSELGKRLR 85 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcCceEEEEEEEcCCCceEEEEEEecCCchhhHHHHHHHHHHhHHHHHHHHHHhCC
Confidence 778999999999999999999999999999999999999999999999999 5557889999999999999999999999
Q ss_pred cccCCeEEEEeccchhhHHHHHHHHhhccccc
Q psy1758 620 IHTLPILNFFYDNSIENAMMISKLIDGIKYCM 651 (1527)
Q Consensus 620 lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~~ 651 (1527)
||++|+|+|+||+|++++.+|++||++++...
T Consensus 86 lr~~PeL~F~~D~s~~~~~ki~~Ll~~l~~~~ 117 (118)
T COG0858 86 LRKTPELHFVYDDSIENGNKIDALLNDLKKAD 117 (118)
T ss_pred eEeCCeEEEEeCcccchHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999987653
No 127
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.93 E-value=5.8e-25 Score=270.96 Aligned_cols=247 Identities=30% Similarity=0.421 Sum_probs=189.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+|+++||+|||||||+++|..... ......|+|++.....+.+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 446899999999999999999975211 1122459999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC---CcHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhHHH---H
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG---VMPQTREAIAHAKISGV-PLIVAINKIDKLDINLDRI---K 189 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g---~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~~~---~ 189 (1527)
.++|||||||++|...+..+++.+|++++|+|++++ ...++.+++..+...+. |+|+|+||+|+.+.+.+.. .
T Consensus 86 ~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~ 165 (426)
T TIGR00483 86 EVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIK 165 (426)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHH
Confidence 999999999999999999999999999999999998 77888888777776665 5889999999975433222 2
Q ss_pred HHHhhhcccccccC---CCCcEEEeeccCCCChhH------------HHHHHHHHHHHHhhcCCCCCCCceEEEEEeecC
Q psy1758 190 QDLISEQVIPEEYG---GASPFISISAKTGVGINK------------LLENISLQAEILELKAPVTTPAKGVIIESRLDK 254 (1527)
Q Consensus 190 ~~l~~~~~~~~~~~---~~~~v~~iSAktg~gI~e------------L~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~ 254 (1527)
.++... ...++ ..++++++||++|.|+++ |++.|.. ......+.+.|++..|.+++..+
T Consensus 166 ~ei~~~---~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~---~~~~~~~~~~p~r~~i~~v~~~~ 239 (426)
T TIGR00483 166 KEVSNL---IKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA---LEPPEKPTDKPLRIPIQDVYSIT 239 (426)
T ss_pred HHHHHH---HHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc---CCCCCCccCCCcEEEEEEEEecC
Confidence 222111 11111 246899999999999987 4444421 22222334678999999999999
Q ss_pred CCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCCeEEE
Q psy1758 255 GKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGEELFV 321 (1527)
Q Consensus 255 ~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~~~~~ 321 (1527)
+.|+|++++|.+|+|++||.|++++ ...+|++|+.+ +..+.+|.||+.+.+ .+++... .+|+++..
T Consensus 240 g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~ 310 (426)
T TIGR00483 240 GVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMH-HEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGH 310 (426)
T ss_pred CCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEEC-CcccCEEcCCCEEEEEECCCChhhcccceEEec
Confidence 9999999999999999999999865 45799999755 467899999998877 4443222 57887653
No 128
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.93 E-value=5e-25 Score=268.87 Aligned_cols=249 Identities=27% Similarity=0.349 Sum_probs=190.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc---ccccCCceeEEEEEEEEE---------------eC---------------
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV---VFSEAGGITQHIGAYNVV---------------TN--------------- 114 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~---~~~~~~giT~~~~~~~~~---------------~~--------------- 114 (1527)
...+|+++||++||||||+.+|++... ......|+|++++..... +.
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 446899999999999999999997543 455567999888776441 11
Q ss_pred ---CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch-hHHH
Q psy1758 115 ---HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-VMPQTREAIAHAKISGVP-LIVAINKIDKLDIN-LDRI 188 (1527)
Q Consensus 115 ---~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~-~~~~ 188 (1527)
...++|+|||||++|...+..++..+|++++|+|++++ +++||.+++..+...+++ +|+|+||+|+.+.+ ..+.
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~ 192 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQ 192 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHH
Confidence 13689999999999999999999999999999999996 799999999988888886 88999999997532 2222
Q ss_pred HHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecC--------CCceEE
Q psy1758 189 KQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDK--------GKGPVA 260 (1527)
Q Consensus 189 ~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~--------~~G~v~ 260 (1527)
..++.... ...+...++++++||++|.|++.|++.|... ......+.+.|++..|.+++..+ +.|+|+
T Consensus 193 ~~ei~~~l--~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~--lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv 268 (460)
T PTZ00327 193 YEEIRNFV--KGTIADNAPIIPISAQLKYNIDVVLEYICTQ--IPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVA 268 (460)
T ss_pred HHHHHHHH--HhhccCCCeEEEeeCCCCCCHHHHHHHHHhh--CCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEE
Confidence 22222211 1112345799999999999999999999742 22223345678888888887554 379999
Q ss_pred EEEeeccEEEeccEEEecce---------------eeeEeEeeccCCceeeecCCCcceEec-----CCCCCC-CCCCeE
Q psy1758 261 TVLIQSGTLRCSDIVVAGAS---------------YGRIRSMLNENGKNILEAGPSIPVEIQ-----GLTKVP-FSGEEL 319 (1527)
Q Consensus 261 ~~~v~~G~l~~gd~vv~g~~---------------~~kVr~i~~~~g~~v~~a~~~~~v~I~-----gl~~~~-~~G~~~ 319 (1527)
+++|.+|++++||.|.+++. ..+|++|+. +++++.+|.||+.+.|. ++.+-. .+|+++
T Consensus 269 ~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~-~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl 347 (460)
T PTZ00327 269 GGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFA-ENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVL 347 (460)
T ss_pred EEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEE-CCeECCEEcCCCEEEEEeccCCCcchhhcccccEE
Confidence 99999999999999998763 369999975 56789999999988885 222211 478876
Q ss_pred EE
Q psy1758 320 FV 321 (1527)
Q Consensus 320 ~~ 321 (1527)
..
T Consensus 348 ~~ 349 (460)
T PTZ00327 348 GY 349 (460)
T ss_pred Ec
Confidence 64
No 129
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.93 E-value=1.3e-24 Score=274.84 Aligned_cols=296 Identities=25% Similarity=0.286 Sum_probs=217.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccc---------------cccCCceeEEEEEEEEEeC-----CeEEEEEeCCChhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVV---------------FSEAGGITQHIGAYNVVTN-----HGSITFLDTPGHEA 128 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~---------------~~~~~giT~~~~~~~~~~~-----~~~i~~iDTPG~e~ 128 (1527)
-.+|+|+||+|||||||+++|...... .....|+|+......+.|. +..++|||||||++
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 357999999999999999999763211 1234588887777666664 46899999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcE
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
|...+.++++.+|++|+|+|+++++..++.+.|..+...++|+++|+||+|+..++......++...... ...++
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~-----~~~~v 161 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGI-----DASDA 161 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCC-----CcceE
Confidence 9999999999999999999999999999999998888889999999999999765554443333322110 11258
Q ss_pred EEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeE
Q psy1758 209 ISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRS 286 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~ 286 (1527)
+++||++|.|+++|+++|.... ..+..+.+.|+.++|++++.+++.|.+++++|.+|+|+.||.|.+.++ ..+|.+
T Consensus 162 i~iSAktG~GI~~Ll~~I~~~l--p~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~ 239 (600)
T PRK05433 162 VLVSAKTGIGIEEVLEAIVERI--PPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDE 239 (600)
T ss_pred EEEecCCCCCHHHHHHHHHHhC--ccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEE
Confidence 9999999999999999997542 333345678899999999999999999999999999999999987543 356777
Q ss_pred eecc--CCceeeecCCCcceEec-CCCCCC--CCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhcc
Q psy1758 287 MLNE--NGKNILEAGPSIPVEIQ-GLTKVP--FSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINK 361 (1527)
Q Consensus 287 i~~~--~g~~v~~a~~~~~v~I~-gl~~~~--~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1527)
+... +..++.++.+|+.+.+. |++++. ..||++....+.. .. .+.. + +
T Consensus 240 i~~~~~~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~--~~--------------------~l~~----~-~ 292 (600)
T PRK05433 240 VGVFTPKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPA--EE--------------------PLPG----F-K 292 (600)
T ss_pred eeccCCCceECcEEcCCCEEEEecccccccccCCCCEEECCCCcc--cc--------------------CCCC----C-C
Confidence 7543 44678899999987774 665432 6899886443210 00 0000 0 0
Q ss_pred ccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 362 EKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 362 ~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
...+.+..-+.+...+..+.|.++|.++..+...+.+
T Consensus 293 ~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~ 329 (600)
T PRK05433 293 EVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTY 329 (600)
T ss_pred CCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEE
Confidence 1123344456666677777788888777655555554
No 130
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.93 E-value=3.5e-25 Score=278.94 Aligned_cols=272 Identities=22% Similarity=0.235 Sum_probs=185.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCccccccccc----ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN----ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD 997 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~----~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d 997 (1527)
.+.|+|+||+|||||||+++|.+........+... ....+....+...|.+.......+.+. .++|||||||.+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIP--GLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccC--CEEEEECCChHH
Confidence 35799999999999999999975532222211111 111111112222222221101111122 279999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC-CCCh--------------hhhH----
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-NARP--------------EWVV---- 1058 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~-~a~~--------------~~v~---- 1058 (1527)
|...+.++++.+|+++||+|+++|+++||..++..+...++|+++|+||+|+. .+.. ..+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~ 163 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELE 163 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999985 2210 1111
Q ss_pred ---HHHHHHHhhhcccc--------cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHh----hcCCC-CCCCCCCc
Q psy1758 1059 ---DATFDLFDKLCATE--------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK----YVPVH-KDNSNNPL 1122 (1527)
Q Consensus 1059 ---~~~~~~~~~l~~~~--------~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~----~lp~p-~~~~~~p~ 1122 (1527)
.++...+...+-.. ...++|++++||++|. |+++|++.+.. +++.+ ..+.+.|+
T Consensus 164 ~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe----------Gi~dLl~~i~~~~~~~l~~~l~~~~~~~~ 233 (586)
T PRK04004 164 EKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE----------GIPDLLMVLAGLAQRYLEERLKIDVEGPG 233 (586)
T ss_pred HHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC----------ChHHHHHHHHHHHHHHHHHhhccCCCCCe
Confidence 11212222222111 1235789999999998 99999888764 34433 34567899
Q ss_pred eeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeec--------CceeEeeeeecCCEEEE
Q psy1758 1123 QLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKG--------LDRVLVNEALSGDIVLI 1194 (1527)
Q Consensus 1123 ~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g--------~~~~~v~~a~AGdIvai 1194 (1527)
++.|+++..+++.|.+++|+|.+|+|++||.|.+.+. .| ....+|..|....+ .....+++|.|..-|-+
T Consensus 234 ~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~-~~-~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i 311 (586)
T PRK04004 234 KGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGK-DG-PIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKI 311 (586)
T ss_pred EEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcC-CC-cceEEEEEEecCcchhhccccccccccccccCCCCceEE
Confidence 9999999999999999999999999999999988766 22 23468888876631 12345566666554444
Q ss_pred --ecceecccCCeee
Q psy1758 1195 --TGIEEICIGSTIC 1207 (1527)
Q Consensus 1195 --~gl~~~~iGdTi~ 1207 (1527)
.|++++..||.+.
T Consensus 312 ~~~gl~~~~~g~~~~ 326 (586)
T PRK04004 312 SAPDLEDALAGSPLR 326 (586)
T ss_pred EeCCccccCCCCeEE
Confidence 3777666676653
No 131
>PRK00049 elongation factor Tu; Reviewed
Probab=99.93 E-value=1.6e-24 Score=263.52 Aligned_cols=251 Identities=27% Similarity=0.312 Sum_probs=193.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|++... .....+|+|++.....+.+++.+++|+|||||.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 3456899999999999999999976211 122357999999988888888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEEcccCCcchh--HHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI-VAINKIDKLDINL--DRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiI-vviNKiDl~~~~~--~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+..++..+|++++|+|+.++..+|+.+++..+...++|.+ +++||+|+.+... +....++..... ...+ ...+
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~ 168 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS-KYDFPGDDT 168 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH-hcCCCccCC
Confidence 999999999999999999999999999999999999999975 6899999975211 111122221111 1111 2357
Q ss_pred cEEEeeccCCC----------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEE
Q psy1758 207 PFISISAKTGV----------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVV 276 (1527)
Q Consensus 207 ~v~~iSAktg~----------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv 276 (1527)
|++++||++|. |+..|++.|.... .......+.|++..|.+++..++.|+|++++|.+|++++||.++
T Consensus 169 ~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~--~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~ 246 (396)
T PRK00049 169 PIIRGSALKALEGDDDEEWEKKILELMDAVDSYI--PTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 246 (396)
T ss_pred cEEEeecccccCCCCcccccccHHHHHHHHHhcC--CCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEE
Confidence 99999999975 4667777775321 12233456799999999999999999999999999999999997
Q ss_pred ecc----eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCCeEEE
Q psy1758 277 AGA----SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGEELFV 321 (1527)
Q Consensus 277 ~g~----~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~~~~~ 321 (1527)
+.+ ...+|++|..+ ++.+.+|.+|+.+.+ .|++... .+|+++..
T Consensus 247 i~p~~~~~~~~VksI~~~-~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~ 297 (396)
T PRK00049 247 IVGIRDTQKTTVTGVEMF-RKLLDEGQAGDNVGALLRGIKREDVERGQVLAK 297 (396)
T ss_pred EeecCCCceEEEEEEEEC-CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEec
Confidence 743 45789999754 568999999998777 5553322 57887764
No 132
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.93 E-value=3.6e-24 Score=265.33 Aligned_cols=146 Identities=25% Similarity=0.403 Sum_probs=120.2
Q ss_pred EEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh--------hhHHHHHHhhccccC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH--------EAFTAMRARGAKVTD 141 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~--------e~f~~~~~~~~~~aD 141 (1527)
+|+++|++|||||||+|+|.+... ..+..+|+|++.....+.+++..+.+|||||+ +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 489999999999999999998774 56778899999999999999999999999995 566677778889999
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 142 IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
++++|+|+.++......+.+..++..+.|+++|+||+|+...... ..+.. .+ +..+++++||++|.|+++
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~~~-------~l-g~~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAEFY-------SL-GFGEPIPISAEHGRGIGD 150 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHHHH-------hc-CCCCeEEEeCCcCCChHH
Confidence 999999999999998888888888889999999999998653211 11111 11 223688899999999888
Q ss_pred HHHHH
Q psy1758 222 LLENI 226 (1527)
Q Consensus 222 L~~~l 226 (1527)
+++.+
T Consensus 151 ll~~i 155 (429)
T TIGR03594 151 LLDAI 155 (429)
T ss_pred HHHHH
Confidence 87755
No 133
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.3e-24 Score=250.01 Aligned_cols=253 Identities=27% Similarity=0.361 Sum_probs=200.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+++++||++||||||+.+|..... ......|+|.+.....++.+..
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 346899999999999999998854321 1123359999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHH
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRI 188 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-------~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~ 188 (1527)
.++++|||||.+|.+.+..++++||++|||+|+.++ ...||++++..++..++. +||++||||+.+++.++.
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf 165 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERF 165 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHH
Confidence 999999999999999999999999999999999997 889999999999999997 999999999998876665
Q ss_pred HHHHhhhccccc--ccC-CCCcEEEeeccCCCChhHHH------------HHHHHHHHHHhhcCCCCCCCceEEEEEeec
Q psy1758 189 KQDLISEQVIPE--EYG-GASPFISISAKTGVGINKLL------------ENISLQAEILELKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 189 ~~~l~~~~~~~~--~~~-~~~~v~~iSAktg~gI~eL~------------~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~ 253 (1527)
.+-..+.....+ .|. ..++|+|+||.+|+|+.+-- ++|- .......+.+.|++..|.+++..
T Consensus 166 ~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd---~~~~p~~~~d~Plr~pI~~v~~i 242 (428)
T COG5256 166 EEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD---QLEPPERPLDKPLRLPIQDVYSI 242 (428)
T ss_pred HHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHh---ccCCCCCCCCCCeEeEeeeEEEe
Confidence 443222211222 222 24789999999999987533 3332 22333445788999999999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcce--EecCCCCCC-CCCCeEEEeCC
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPV--EIQGLTKVP-FSGEELFVILN 324 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v--~I~gl~~~~-~~G~~~~~~~~ 324 (1527)
.+.|++..++|.+|.|++||.|++.+. .+.|+++..+ .+++..+.||+-+ .|.|+.+-+ .+||++--..+
T Consensus 243 ~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~-~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n 317 (428)
T COG5256 243 SGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH-HEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDN 317 (428)
T ss_pred cCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec-ccccccCCCCCeEEEEecCCchhccCCccEeccCCC
Confidence 999999999999999999999998665 5799999776 5678888888765 556665533 78997664443
No 134
>PRK13817 ribosome-binding factor A; Provisional
Probab=99.93 E-value=1e-25 Score=224.39 Aligned_cols=109 Identities=29% Similarity=0.504 Sum_probs=103.4
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhccccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHI 620 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~l 620 (1527)
|..|+++.++++|+++++++++||++++||||+|+||+||++|+||||+++++ +.++++++|++|+||||+.||++++|
T Consensus 4 R~~Rv~~~I~reis~il~~ei~dp~l~~vtVt~V~vS~Dl~~AkVyvs~~~~~-~~~~~~~~L~~a~g~iR~~l~~~l~l 82 (119)
T PRK13817 4 RQQRVADLIHQQLAELLKKEVRDSRLSKISLTAVSISPDLKQAKVFYSLLENQ-NEKEVQKALNKATGYLRHLLAQATVL 82 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCceEEeEEEECCCCCEEEEEEEECCCc-cHHHHHHHHHHhHHHHHHHHHHhCCC
Confidence 67789999999999999999999999999999999999999999999999764 45788999999999999999999999
Q ss_pred ccCCeEEEEeccchhhHHHHHHHHhhcccc
Q psy1758 621 HTLPILNFFYDNSIENAMMISKLIDGIKYC 650 (1527)
Q Consensus 621 r~~P~l~F~~D~s~~~~~~i~~ll~~i~~~ 650 (1527)
|++|+|+|+||+|+|++.+|++||+++..+
T Consensus 83 R~~PeL~F~~D~s~e~~~~I~~Ll~~l~~~ 112 (119)
T PRK13817 83 RYVPKLEFVYDESIERAHRISLLIERALKK 112 (119)
T ss_pred eECCEEEEEEcCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999755
No 135
>PRK13816 ribosome-binding factor A; Provisional
Probab=99.92 E-value=2.1e-25 Score=225.61 Aligned_cols=112 Identities=29% Similarity=0.578 Sum_probs=104.0
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcce-eeeEEEEEEEeCCcceEEEEEEecCCh-------hhHHHHHHHHHHhhHHHHH
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPII-NIITITEVKITLDYSYAKIFFTTFNKD-------ISIKNILDNLSKAKNYIRF 612 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~-~~vtvt~V~~s~Dl~~a~vy~s~~~~~-------~~~~~~~~~l~~~~g~ir~ 612 (1527)
|..|+++.|+++|+++++++++||++ .+||||+|+||+||++|+||||+||++ .++++++++|++++||||+
T Consensus 4 R~~Rv~~~Irreis~il~~ei~dprl~~~vtVT~V~vS~DL~~AkVyvs~lg~~~~~~~~~~~~~~~l~~L~~a~g~iR~ 83 (131)
T PRK13816 4 RLKRMADSVQRELSELIRQELKDPRLGGLVTISSVKVSPDLGYADVYVTVMGRELSDDQNEVAHRETLDVLNKASGFLRT 83 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccCCceEEeEEEECCCCCeEEEEEEecCCccccccchhHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999 589999999999999999999999853 3467899999999999999
Q ss_pred HHhcccccccCCeEEEEeccchhhHHHHHHHHhhcccccc
Q psy1758 613 KLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIKYCMQ 652 (1527)
Q Consensus 613 ~l~~~l~lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~~~ 652 (1527)
.||++|+||++|+|+|++|+|++++.+|++||+++..+.+
T Consensus 84 ~L~krl~lR~~PeL~F~~D~s~e~~~~I~~Ll~~i~~~~~ 123 (131)
T PRK13816 84 ELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQDLP 123 (131)
T ss_pred HHHhhcCCeECCEEEEEECCChhHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999975533
No 136
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.92 E-value=6e-24 Score=259.60 Aligned_cols=249 Identities=27% Similarity=0.345 Sum_probs=186.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc---ccccCCceeEEEEEEEEE--------------e------------CCeEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV---VFSEAGGITQHIGAYNVV--------------T------------NHGSIT 119 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~---~~~~~~giT~~~~~~~~~--------------~------------~~~~i~ 119 (1527)
..+|+++||+|||||||+++|.+... ......|+|.+.....+. . .+..++
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 46799999999999999999976432 223345778777643322 1 135799
Q ss_pred EEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhH-HHHHHHhhhc
Q psy1758 120 FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGVP-LIVAINKIDKLDINLD-RIKQDLISEQ 196 (1527)
Q Consensus 120 ~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~-~~~~~l~~~~ 196 (1527)
|||||||++|...+..++..+|++++|+|++++. ..|+.+++..+...+++ +++|+||+|+.+.+.. ....++...
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~- 162 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF- 162 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh-
Confidence 9999999999999999999999999999999988 89999999988888764 8999999999763321 111222111
Q ss_pred ccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCC--------CceEEEEEeeccE
Q psy1758 197 VIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKG--------KGPVATVLIQSGT 268 (1527)
Q Consensus 197 ~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~~~v~~G~ 268 (1527)
....+...++++++||++|.|+++|+++|.... .....+.+.|++..|.+++..++ +|+|++++|.+|+
T Consensus 163 -l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l--~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~ 239 (406)
T TIGR03680 163 -VKGTVAENAPIIPVSALHNANIDALLEAIEKFI--PTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGK 239 (406)
T ss_pred -hhhcccCCCeEEEEECCCCCChHHHHHHHHHhC--CCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCE
Confidence 111122346899999999999999999997432 22334456789999999886544 6789999999999
Q ss_pred EEeccEEEecce--------------eeeEeEeeccCCceeeecCCCcceEec-----CCCCCC-CCCCeEEEe
Q psy1758 269 LRCSDIVVAGAS--------------YGRIRSMLNENGKNILEAGPSIPVEIQ-----GLTKVP-FSGEELFVI 322 (1527)
Q Consensus 269 l~~gd~vv~g~~--------------~~kVr~i~~~~g~~v~~a~~~~~v~I~-----gl~~~~-~~G~~~~~~ 322 (1527)
|++||.|.++|. ..+|++|+. ++.++.+|.||+.+.+. ++..-. .+|+++...
T Consensus 240 i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~-~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~ 312 (406)
T TIGR03680 240 LKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRA-GGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKP 312 (406)
T ss_pred EeCCCEEEEccCccccccccccccccceEEeEEEE-CCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcC
Confidence 999999999765 258999975 46789999999998874 222211 467766644
No 137
>KOG0461|consensus
Probab=99.92 E-value=1e-24 Score=240.47 Aligned_cols=246 Identities=25% Similarity=0.290 Sum_probs=200.8
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---------CeEEEEEeCC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---------GTRINIIDTP 993 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---------~~~iniiDTP 993 (1527)
.|++|+||+|+|||||..+|...+.+ ...|.++...|||+|.+.....+... ..++.+||+|
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~ST---------aAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCP 78 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGST---------AAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCP 78 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccc---------hhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCC
Confidence 69999999999999999999754221 23588899999999999887766542 3467999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-----hhhhHHHHHHHHhhh
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-----PEWVVDATFDLFDKL 1068 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-----~~~v~~~~~~~~~~l 1068 (1527)
||+.....+..+....|..+||||+..|.++||.+++-....+-.+.+||+||+|....+ .++....++..++
T Consensus 79 GHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe-- 156 (522)
T KOG0461|consen 79 GHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLE-- 156 (522)
T ss_pred CcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999998888888899999999975332 2222222333332
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCcc
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 1148 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~l 1148 (1527)
...-.-..|++.+||+.|+- ...++.+|.+.+.+.+-.|..|+++||.|.|..++.-.+.|.+..|.|.+|++
T Consensus 157 -~t~f~g~~PI~~vsa~~G~~------~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~ 229 (522)
T KOG0461|consen 157 -STGFDGNSPIVEVSAADGYF------KEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVL 229 (522)
T ss_pred -hcCcCCCCceeEEecCCCcc------chhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEE
Confidence 22222346999999999951 12388999999999999999999999999999999999999999999999999
Q ss_pred ccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE
Q psy1758 1149 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI 1194 (1527)
Q Consensus 1149 k~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai 1194 (1527)
+.|+.|.+..- + ...||+++.+|. .++.+|.+||..++
T Consensus 230 ~ln~~iE~PAL--~--e~rkVKslqmf~----~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 230 RLNTEIEFPAL--N--EKRKVKSLQMFK----QRVTSAAAGDRAGF 267 (522)
T ss_pred ecCcEEeeccc--c--hhhhhhhHHHHh----hhhhhhhcccceee
Confidence 99999998655 2 345788887774 67999999999865
No 138
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=7.5e-24 Score=245.47 Aligned_cols=229 Identities=29% Similarity=0.406 Sum_probs=194.2
Q ss_pred EEEEEecCCCChhHHHHHHHcccc---ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV---VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~---~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.|+..||.+||||||+.++++... ......|+|+|++.+....+++.+.|+|+|||++|.+.+..++...|.++|||
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 578899999999999999987653 44556799999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 148 AADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 148 da~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
|+++|+++||.|++..+...+++ .++|+||+|+.+.. .+....++..... ....++|.+|+++|+||++|.+.
T Consensus 82 ~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~-----l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS-----LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc-----cccccccccccccCCCHHHHHHH
Confidence 99999999999999999999998 59999999998632 1122222222111 23458899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcc
Q psy1758 226 ISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIP 303 (1527)
Q Consensus 226 l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~ 303 (1527)
|....+ +.....+.|++..|...+..+|.|+|+++.+.+|++++||.+++.+. ..+||+|+ .+++++++|.+|+.
T Consensus 157 l~~L~~--~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq-~~d~d~~~a~AG~R 233 (447)
T COG3276 157 LIDLLE--EIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQ-AHDVDVEEAKAGQR 233 (447)
T ss_pred HHHhhh--hhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeee-ecCcchhhccccce
Confidence 987665 34456678999999999999999999999999999999999999754 57999995 45568888988888
Q ss_pred eEec
Q psy1758 304 VEIQ 307 (1527)
Q Consensus 304 v~I~ 307 (1527)
|.+.
T Consensus 234 VgLa 237 (447)
T COG3276 234 VGLA 237 (447)
T ss_pred eeee
Confidence 7664
No 139
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.92 E-value=1.3e-23 Score=256.31 Aligned_cols=248 Identities=23% Similarity=0.270 Sum_probs=181.6
Q ss_pred EEEEEecCCCChhHHHHHHHcccc---------------------------------ccccCCceeEEEEEEEEEeCCeE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV---------------------------------VFSEAGGITQHIGAYNVVTNHGS 117 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~---------------------------------~~~~~~giT~~~~~~~~~~~~~~ 117 (1527)
+|+++||+|+|||||+++|..... ......|+|++.....+.+++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 699999999999999999853221 11123588999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHHHHHHhhhc
Q psy1758 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQ 196 (1527)
Q Consensus 118 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~~~~l~~~~ 196 (1527)
++|||||||++|...+..++..+|++++|+|+.+|+.+|+.+++..+...++| +|+|+||+|+.+.+.+..........
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~ 161 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYL 161 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888876 88999999997644322211111111
Q ss_pred ccccccC-CCCcEEEeeccCCCChhHH------------HHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEE
Q psy1758 197 VIPEEYG-GASPFISISAKTGVGINKL------------LENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVL 263 (1527)
Q Consensus 197 ~~~~~~~-~~~~v~~iSAktg~gI~eL------------~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~ 263 (1527)
.....++ ..++++++||++|.|++++ ++.|.. ........+.|++..|...+.....+.-.+++
T Consensus 162 ~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~---~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~ 238 (406)
T TIGR02034 162 AFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET---VEVERDAQDLPLRFPVQYVNRPNLDFRGYAGT 238 (406)
T ss_pred HHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh---cCCCCCcCCCCcccceEEEeecCCCcEEEEEE
Confidence 0111111 2468999999999999863 333321 11222234567887777665433322236789
Q ss_pred eeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEecCCCCC-CCCCCeEEEe
Q psy1758 264 IQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQGLTKV-PFSGEELFVI 322 (1527)
Q Consensus 264 v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~-~~~G~~~~~~ 322 (1527)
|.+|+|++||.|.+.| ...+|++|+.+ +.++.+|.||+.+.+..-... -.+|+++...
T Consensus 239 v~~G~l~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~ 299 (406)
T TIGR02034 239 IASGSVHVGDEVVVLPSGRSSRVARIVTF-DGDLEQARAGQAVTLTLDDEIDISRGDLLAAA 299 (406)
T ss_pred EecceeecCCEEEEeCCCcEEEEEEEEEC-CcccCEeCCCCEEEEEECCccccCCccEEEcC
Confidence 9999999999998855 45899999765 457999999999988743222 2678877643
No 140
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.91 E-value=2.8e-23 Score=253.37 Aligned_cols=250 Identities=26% Similarity=0.336 Sum_probs=185.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEeC--------------------------CeEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVTN--------------------------HGSI 118 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~~--------------------------~~~i 118 (1527)
...+|+++||+|||||||+++|.+.. .......|+|.+.+...+.+. ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 45789999999999999999997642 123335688888765332221 2579
Q ss_pred EEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhHH-HHHHHhhh
Q psy1758 119 TFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGV-PLIVAINKIDKLDINLDR-IKQDLISE 195 (1527)
Q Consensus 119 ~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~~-~~~~l~~~ 195 (1527)
+|||||||++|...+..++..+|++++|+|++++. ..++.+++..+...++ |+++|+||+|+.+.+... ....+...
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~ 167 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEF 167 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999987 7899999888877776 589999999997633211 11111111
Q ss_pred cccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecC--------CCceEEEEEeecc
Q psy1758 196 QVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDK--------GKGPVATVLIQSG 267 (1527)
Q Consensus 196 ~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~--------~~G~v~~~~v~~G 267 (1527)
....+....+++++||++|.|+++|++.|.... .....+.+.|++..|.+++..+ +.|+|++++|.+|
T Consensus 168 --l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l--~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G 243 (411)
T PRK04000 168 --VKGTVAENAPIIPVSALHKVNIDALIEAIEEEI--PTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG 243 (411)
T ss_pred --hccccCCCCeEEEEECCCCcCHHHHHHHHHHhC--CCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeC
Confidence 001112346899999999999999999996432 2233445778899999988543 4678999999999
Q ss_pred EEEeccEEEecce--------------eeeEeEeeccCCceeeecCCCcceEec-----CCCCC-CCCCCeEEEe
Q psy1758 268 TLRCSDIVVAGAS--------------YGRIRSMLNENGKNILEAGPSIPVEIQ-----GLTKV-PFSGEELFVI 322 (1527)
Q Consensus 268 ~l~~gd~vv~g~~--------------~~kVr~i~~~~g~~v~~a~~~~~v~I~-----gl~~~-~~~G~~~~~~ 322 (1527)
+|++||.|.+.+. ..+|++|... +..+.+|.||+.+.+. ++..- -.+|+++...
T Consensus 244 ~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~-~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~ 317 (411)
T PRK04000 244 VLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAG-GEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKP 317 (411)
T ss_pred EEecCCEEEEcCCcceecccccccccceEEEeEEEEC-CEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcC
Confidence 9999999998764 3589999654 5789999999998775 22111 1468876644
No 141
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.91 E-value=1.6e-24 Score=243.57 Aligned_cols=186 Identities=31% Similarity=0.320 Sum_probs=147.4
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCccccccc--c-------------cceecchhhhhcccceeEeeeeEEEEecCeEEE
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQN--I-------------NARIMDSNEIEKERGITIFSKNCSIEYNGTRIN 988 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~--~-------------~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~in 988 (1527)
||+|+||+|||||||+++|++.+|.+.+.+. + ..+++|..+.|++||+|+++....+.|++++++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 7999999999999999999999998775431 1 124899999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHhcCEEEEEEeCCC-------CCChhHHHHHHHHHHcCC-ccEEEEeccCCCCC-----Chh
Q psy1758 989 IIDTPGHADFGGEVERILSMVDNVLLLIDAVE-------GPMPQTRFVTRKALKLGF-KPIVVVNKIDRSNA-----RPE 1055 (1527)
Q Consensus 989 iiDTPGh~df~~ev~~~l~~aD~ailVVDa~~-------G~~~qt~~~~~~~~~~gl-p~IvviNKiD~~~a-----~~~ 1055 (1527)
+||||||.+|..++.++++.+|++|+|||+++ ++..|+..++..+...++ |+|+|+||+|+..+ +++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 567899999988888885 56779999999742 245
Q ss_pred hhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhc
Q psy1758 1056 WVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1056 ~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~l 1111 (1527)
++.+++...+..++.. ...+|++++||++|.+..+... .+.--..|+++|....
T Consensus 161 ~i~~~l~~~l~~~~~~--~~~~~ii~iSA~tg~gi~~~~~~~~w~~g~~l~~~l~~~~ 216 (219)
T cd01883 161 EIKKELSPFLKKVGYN--PKDVPFIPISGLTGDNLIEKSENMPWYKGPTLLEALDSLE 216 (219)
T ss_pred HHHHHHHHHHHHcCCC--cCCceEEEeecCcCCCCCcCCCCCCCccCCcHHHHHhCCC
Confidence 5566665555444321 1257899999999986443221 1111267888885443
No 142
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.91 E-value=3.5e-23 Score=257.79 Aligned_cols=302 Identities=21% Similarity=0.267 Sum_probs=223.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc----------------c------cccCCceeEEEEEEEEEeCCeEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------V------FSEAGGITQHIGAYNVVTNHGSITFLDTP 124 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~------~~~~~giT~~~~~~~~~~~~~~i~~iDTP 124 (1527)
.+..+|+|+||+|+|||||+++|..... . .....|+|+......+.+++.++++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3557899999999999999999863111 0 11224777888888899999999999999
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc------
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI------ 198 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~------ 198 (1527)
||++|...+.++++.+|++|+|+|+++++..++...+..+...++|+++++||+|+..++..+...++......
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~ 167 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPIT 167 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999876654333322110000
Q ss_pred -------------------------------------c-------------c------------------------ccCC
Q psy1758 199 -------------------------------------P-------------E------------------------EYGG 204 (1527)
Q Consensus 199 -------------------------------------~-------------~------------------------~~~~ 204 (1527)
. + ..+.
T Consensus 168 ~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~ 247 (526)
T PRK00741 168 WPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAGE 247 (526)
T ss_pred eccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcCC
Confidence 0 0 0012
Q ss_pred CCcEEEeeccCCCChhHHHHHHHHHHHHHhhc-------CCCCCCCceEEEEEe---ecCCCceEEEEEeeccEEEeccE
Q psy1758 205 ASPFISISAKTGVGINKLLENISLQAEILELK-------APVTTPAKGVIIESR---LDKGKGPVATVLIQSGTLRCSDI 274 (1527)
Q Consensus 205 ~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~-------~~~~~p~~~~v~~~~---~~~~~G~v~~~~v~~G~l~~gd~ 274 (1527)
.+|+++.||.++.||..|++.+......+... .+.+.++.++|++.. .++..|++++++|.+|+++.|+.
T Consensus 248 ~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~ 327 (526)
T PRK00741 248 LTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMK 327 (526)
T ss_pred eEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEECCCCE
Confidence 37899999999999999999998654211100 112346889999998 45689999999999999999999
Q ss_pred EEecce--eeeE---eEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhh
Q psy1758 275 VVAGAS--YGRI---RSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKL 349 (1527)
Q Consensus 275 vv~g~~--~~kV---r~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~ 349 (1527)
|....+ ..|+ ..++..+...+.+|.||+.+.+.+++.. ..||.+..-. + + .+
T Consensus 328 v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~-~~GDTL~~~~--~----~-~~--------------- 384 (526)
T PRK00741 328 VRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI-QIGDTFTQGE--K----L-KF--------------- 384 (526)
T ss_pred EEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCC-ccCCCccCCC--c----c-cc---------------
Confidence 976433 2344 4455566677899999999999998876 7999886311 0 0 00
Q ss_pred hhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEe
Q psy1758 350 HKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIH 400 (1527)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~ 400 (1527)
+ .+ ..-...+..-|.+...+..+.+..+|.+|..+. .+++-.
T Consensus 385 ---~----~i-~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED-~l~~~~ 426 (526)
T PRK00741 385 ---T----GI-PNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEG-AVQVFR 426 (526)
T ss_pred ---C----CC-CCCCccEEEEEEECCchhHHHHHHHHHHHhhcC-CeEEEE
Confidence 0 00 011244667788888888999999999887665 466644
No 143
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.91 E-value=2.2e-23 Score=261.36 Aligned_cols=256 Identities=24% Similarity=0.275 Sum_probs=179.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe------------------cC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------NG 984 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------~~ 984 (1527)
+-|+|+||+|||||||+++|++........ .|+|.......+.+ +.
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~----------------ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~ 68 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREA----------------GGITQHIGATEIPMDVIEGICGDLLKKFKIRLKI 68 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccC----------------CceecccCeeEeeecccccccccccccccccccc
Confidence 479999999999999999998653222111 22332222222211 11
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-C----------
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-R---------- 1053 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~---------- 1053 (1527)
..++|||||||.+|...+.++++.+|+++||+|+++|+++||.+++..+...++|.++|+||+|+... .
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHH
Confidence 24899999999999999999999999999999999999999999999999999999999999998631 0
Q ss_pred ----hhhhHHHHHHH-------Hhhhccc--------ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh----
Q psy1758 1054 ----PEWVVDATFDL-------FDKLCAT--------EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY---- 1110 (1527)
Q Consensus 1054 ----~~~v~~~~~~~-------~~~l~~~--------~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~---- 1110 (1527)
.+.+...+.+. +.+.+.. +...++|++++||++|. |+++|++++...
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe----------GideLl~~l~~l~~~~ 218 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE----------GIPELLTMLAGLAQQY 218 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC----------ChhHHHHHHHHHHHHH
Confidence 01111111111 1111111 11235799999999998 999999888642
Q ss_pred cC-CCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCc--------ee
Q psy1758 1111 VP-VHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLD--------RV 1181 (1527)
Q Consensus 1111 lp-~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~--------~~ 1181 (1527)
++ ....+.++|+++.|..+..+.+.|.++.|.|.+|+|++||.|.+.+. .| +...||..|+...+.+ ..
T Consensus 219 l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~-~~-~i~~kVr~l~~~~~l~e~r~~~~~~~ 296 (590)
T TIGR00491 219 LEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGS-DD-VIVTRVRALLKPRPLEEMRESRKKFQ 296 (590)
T ss_pred hhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccC-CC-cccEEEEEecCCCccccccccccccC
Confidence 32 22345678999999999999999999999999999999999999877 23 3456888887654321 22
Q ss_pred Eeeeeec--CCEEEEecceecccCCee
Q psy1758 1182 LVNEALS--GDIVLITGIEEICIGSTI 1206 (1527)
Q Consensus 1182 ~v~~a~A--GdIvai~gl~~~~iGdTi 1206 (1527)
.++++.| |--+.+.|++++..||.+
T Consensus 297 ~~~~~~~~~~~~v~~~~l~~~~aG~~~ 323 (590)
T TIGR00491 297 KVDEVVAAAGVKIAAPGLDDVMAGSPI 323 (590)
T ss_pred CcceecCCCceeEEecCCCCCCCCCEE
Confidence 3444333 333445566655555554
No 144
>PRK00521 rbfA ribosome-binding factor A; Validated
Probab=99.91 E-value=2.3e-24 Score=216.77 Aligned_cols=114 Identities=32% Similarity=0.554 Sum_probs=107.8
Q ss_pred cccccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhcc
Q psy1758 538 ECERLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKK 617 (1527)
Q Consensus 538 ecgr~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~ 617 (1527)
+..|..|+++.++++|+++++++++||+++.||||+|++|+||++|+||||+++++.+.++++++|++++|+||+.||++
T Consensus 4 ~~~R~~Rv~~~i~~~is~il~~~i~d~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~~~~~~iR~~la~~ 83 (120)
T PRK00521 4 ESQRALRVAEQIQRELAEILQREIKDPRLGMVTVTDVEVSPDLAHAKVYVTVLGDEEDKEEALAALKKAAGFLRSELGKR 83 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEEEECCCCCEEEEEEEECCCchhHHHHHHHHHHhHHHHHHHHHhh
Confidence 34577899999999999999999999999999999999999999999999999877777899999999999999999999
Q ss_pred cccccCCeEEEEeccchhhHHHHHHHHhhccccc
Q psy1758 618 LHIHTLPILNFFYDNSIENAMMISKLIDGIKYCM 651 (1527)
Q Consensus 618 l~lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~~ 651 (1527)
++||++|+|+|++|+++|++.+|++||++++.+.
T Consensus 84 l~lr~~P~L~F~~D~s~e~~~~i~~lL~~i~~~~ 117 (120)
T PRK00521 84 LRLRYVPELRFVYDESLEYGNRIDELLRKAKKED 117 (120)
T ss_pred CCCccCCEEEEEECCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999997754
No 145
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=99.91 E-value=2.4e-25 Score=218.20 Aligned_cols=107 Identities=50% Similarity=0.797 Sum_probs=95.3
Q ss_pred hhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChh
Q psy1758 352 TENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADAS 431 (1527)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~ 431 (1527)
++++++++.+.+.+.+++|||||++||+|||.++|.++++++++++|++++||+||++||.+|++++|+|+||||+++++
T Consensus 2 le~~~~~~~~~~~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~~~a~Ii~FNv~~~~~ 81 (108)
T PF11987_consen 2 LEELFQEIEEEEIKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASASNAIIIAFNVKVSPD 81 (108)
T ss_dssp HSCCCCCHCC-CSSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHHHC-EEEESSS-B-HH
T ss_pred HHHHHHHHhccCCceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHhhCCEEEEeeCCCCHH
Confidence 34445555566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEeehHHHHHHHHHH
Q psy1758 432 TRKLAQINNINIRYHNIIYNIIKEIKS 458 (1527)
Q Consensus 432 ~~~~a~~~~V~i~~~~iIY~l~~~~~~ 458 (1527)
+++.|++.||+|++|||||+|+||+++
T Consensus 82 ~~~~a~~~~V~I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 82 AKDLAKKSGVKIRSHNVIYDLIDDIKK 108 (108)
T ss_dssp HHHCHHSSTSEEEESTTCCHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHhhC
Confidence 999999999999999999999999984
No 146
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.91 E-value=4.6e-23 Score=255.04 Aligned_cols=254 Identities=21% Similarity=0.226 Sum_probs=184.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc---------------------------------cccCCceeEEEEEEEEEe
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV---------------------------------FSEAGGITQHIGAYNVVT 113 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~---------------------------------~~~~~giT~~~~~~~~~~ 113 (1527)
...++|+++||+|+|||||+++|...... .....|+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34578999999999999999998643210 111247899999888999
Q ss_pred CCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhHHH---H
Q psy1758 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV-PLIVAINKIDKLDINLDRI---K 189 (1527)
Q Consensus 114 ~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~~~---~ 189 (1527)
++.+++|||||||++|...+..++..+|++++|+|+++|+.+|+.+++..+...++ |+|+|+||+|+.+.+.... .
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~ 184 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIR 184 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888876 5889999999975443222 1
Q ss_pred HHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH--------HHHHHHHH-hhcCCCCCCCceEEEEEeecCCCceEE
Q psy1758 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN--------ISLQAEIL-ELKAPVTTPAKGVIIESRLDKGKGPVA 260 (1527)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~--------l~~~~~~~-~~~~~~~~p~~~~v~~~~~~~~~G~v~ 260 (1527)
.++.... ....+....+++++||++|.|++++.+. |....+.. ....+.+.|++..|..++.......-.
T Consensus 185 ~~l~~~~-~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~ 263 (474)
T PRK05124 185 EDYLTFA-EQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGY 263 (474)
T ss_pred HHHHHHH-HhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccce
Confidence 2221110 0001112478999999999999875432 22211111 122234568888777765433322225
Q ss_pred EEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcceEecCCCCC-CCCCCeEEEe
Q psy1758 261 TVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPVEIQGLTKV-PFSGEELFVI 322 (1527)
Q Consensus 261 ~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~-~~~G~~~~~~ 322 (1527)
.|+|.+|+|++||.|++++. ..+|++|+.++ ..+..|.||+.+.+..-... ..+|+++...
T Consensus 264 ~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~-~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~ 327 (474)
T PRK05124 264 AGTLASGVVKVGDRVKVLPSGKESNVARIVTFD-GDLEEAFAGEAITLVLEDEIDISRGDLLVAA 327 (474)
T ss_pred EEEEEeEEEecCCEEEEecCCceEEEEEEEEcC-ccccCcCCCCEEEEEeCCccccCCccEEECC
Confidence 68999999999999998765 57999998654 47899999999988743222 2689877643
No 147
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.91 E-value=7.5e-23 Score=265.52 Aligned_cols=301 Identities=23% Similarity=0.233 Sum_probs=229.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
-.+|+|+||+|||||||+++|...... .....|+|++.....+.|++.+++|||||||.+|.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 358999999999999999999642210 11246899999999999999999999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc------------
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI------------ 198 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~------------ 198 (1527)
..+.++++.+|++++|+|+.++...++..++..+...++|+++|+||+|+..++.......+......
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis~~ 169 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAE 169 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEeccccC
Confidence 99999999999999999999999999999999999999999999999999875544333332211000
Q ss_pred -------------------------------------------------------------------ccc----------
Q psy1758 199 -------------------------------------------------------------------PEE---------- 201 (1527)
Q Consensus 199 -------------------------------------------------------------------~~~---------- 201 (1527)
.++
T Consensus 170 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~ 249 (689)
T TIGR00484 170 DNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVL 249 (689)
T ss_pred CCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 000
Q ss_pred cCCCCcEEEeeccCCCChhHHHHHHHHHHHHHh-----------------hcCCCCCCCceEEEEEeecCCCceEEEEEe
Q psy1758 202 YGGASPFISISAKTGVGINKLLENISLQAEILE-----------------LKAPVTTPAKGVIIESRLDKGKGPVATVLI 264 (1527)
Q Consensus 202 ~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~-----------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v 264 (1527)
.+..+|++..||+++.|++.|++.|......+. ...+++.|+.++|++...+++.|.+++++|
T Consensus 250 ~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV 329 (689)
T TIGR00484 250 NCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQLTFVRV 329 (689)
T ss_pred cCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeEEEEEE
Confidence 023468999999999999999999975431110 011235678899999999999999999999
Q ss_pred eccEEEeccEEEecce--eeeEeEe---eccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhch
Q psy1758 265 QSGTLRCSDIVVAGAS--YGRIRSM---LNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKF 339 (1527)
Q Consensus 265 ~~G~l~~gd~vv~g~~--~~kVr~i---~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~ 339 (1527)
++|+|+.||.|..... ..+|..+ ......++.++.+|+.+.|.|++.. ..||++....+.
T Consensus 330 ~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~-------------- 394 (689)
T TIGR00484 330 YSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT-TTGDTLCDPKID-------------- 394 (689)
T ss_pred EEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCC-CCCCEEeCCCCc--------------
Confidence 9999999999976432 2344444 4444467899999999999999877 789988522110
Q ss_pred HHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 340 RDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
..+.. + .-....+.+.|.+...+-.+.|.++|.++......++|.
T Consensus 395 ----------~~~~~----~-~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~ 439 (689)
T TIGR00484 395 ----------VILER----M-EFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTF 439 (689)
T ss_pred ----------cccCC----C-CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEE
Confidence 00000 1 012356888899999999999999999997776677763
No 148
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.91 E-value=7.1e-24 Score=236.42 Aligned_cols=186 Identities=30% Similarity=0.325 Sum_probs=145.0
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCccccc--cc-------------ccceecchhhhhcccceeEeeeeEEEEecCeEEE
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKN--QN-------------INARIMDSNEIEKERGITIFSKNCSIEYNGTRIN 988 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~--~~-------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~in 988 (1527)
||+|+||+|||||||+++|++.++.+... +. ...+++|..+.|++||+|+++....+.|++.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999999998887621 11 1247899999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCCh---hhhHHHHHHH
Q psy1758 989 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARP---EWVVDATFDL 1064 (1527)
Q Consensus 989 iiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~~---~~v~~~~~~~ 1064 (1527)
|||||||.+|..++..+++.+|++|+|+|+++|+..|++.++..+...++|. |+|+||+|+.+.+. +.+.+++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888775 56899999976432 2344555544
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p 1114 (1527)
+..++.. ..|++++||++|.+..+... .+.--..|+++| +.+|+|
T Consensus 161 ~~~~~~~----~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~-~~~~~~ 207 (208)
T cd04166 161 AAKLGIE----DITFIPISALDGDNVVSRSENMPWYSGPTLLEHL-ETVPIA 207 (208)
T ss_pred HHHcCCC----CceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHH-hcCCCC
Confidence 4444321 24699999999975433211 111114667766 555554
No 149
>PRK00007 elongation factor G; Reviewed
Probab=99.91 E-value=1.1e-22 Score=263.69 Aligned_cols=303 Identities=23% Similarity=0.241 Sum_probs=230.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+-.+|+|+||+|||||||+++|..... ......|+|++.....+.|.+.+++|+|||||.+|
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 345899999999999999999963211 11135689999999999999999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----------- 198 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----------- 198 (1527)
...+.++++.+|++|+|+|+.+|+..|+..++..+...++|+|+++||+|+.+++.......+......
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipisa 168 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGA 168 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecCcc
Confidence 999999999999999999999999999999999999999999999999999865544333332111000
Q ss_pred -----------------c----------------------------------------------------c---------
Q psy1758 199 -----------------P----------------------------------------------------E--------- 200 (1527)
Q Consensus 199 -----------------~----------------------------------------------------~--------- 200 (1527)
+ +
T Consensus 169 ~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~ 248 (693)
T PRK00007 169 EDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALRKA 248 (693)
T ss_pred CCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 0 0
Q ss_pred -ccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHh------------------hcCCCCCCCceEEEEEeecCCCceEEE
Q psy1758 201 -EYGGASPFISISAKTGVGINKLLENISLQAEILE------------------LKAPVTTPAKGVIIESRLDKGKGPVAT 261 (1527)
Q Consensus 201 -~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~------------------~~~~~~~p~~~~v~~~~~~~~~G~v~~ 261 (1527)
..+..+|++..||+++.|++.|++.|......+. ...+++.|+.++|++...++..|.+++
T Consensus 249 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~ 328 (693)
T PRK00007 249 TIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKLTF 328 (693)
T ss_pred HhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCCcEEE
Confidence 0013568999999999999999999975431110 001235578899999999999999999
Q ss_pred EEeeccEEEeccEEEecc--eeeeEeEee---ccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhh
Q psy1758 262 VLIQSGTLRCSDIVVAGA--SYGRIRSML---NENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQ 336 (1527)
Q Consensus 262 ~~v~~G~l~~gd~vv~g~--~~~kVr~i~---~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~ 336 (1527)
++|++|+|+.||.|.... ...+|..++ .....++.++.+|+.+.|.|++.. ..||.+...+..
T Consensus 329 ~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~GdtL~~~~~~----------- 396 (693)
T PRK00007 329 FRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT-TTGDTLCDEKNP----------- 396 (693)
T ss_pred EEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccC-CcCCEeeCCCCc-----------
Confidence 999999999999997542 234555554 444567899999999999999876 689988522100
Q ss_pred hchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEe
Q psy1758 337 GKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIH 400 (1527)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~ 400 (1527)
..+.. + .-....+.+-|.+...+....|.++|..+..+...++|..
T Consensus 397 -------------~~l~~----~-~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~ 442 (693)
T PRK00007 397 -------------IILES----M-EFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVST 442 (693)
T ss_pred -------------cccCC----C-CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEE
Confidence 00000 0 0123567788999999999999999999977776777743
No 150
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.5e-23 Score=231.07 Aligned_cols=257 Identities=25% Similarity=0.308 Sum_probs=197.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc---------------------------------cccCCceeEEEEEEEEEeC
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV---------------------------------FSEAGGITQHIGAYNVVTN 114 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~---------------------------------~~~~~giT~~~~~~~~~~~ 114 (1527)
...+++.+|+++.|||||+.+|..+.-. .....|||+|+.+..+.++
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4567999999999999999998654211 1122499999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHHHHHHh
Q psy1758 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLI 193 (1527)
Q Consensus 115 ~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~~~~l~ 193 (1527)
.+++.+.||||||.|...|..+++.||++|+++||..|+.+||+.|-..+...+++ +++++|||||.+.+.+.+.....
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~ 164 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVA 164 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 89999999999988776655544
Q ss_pred hhcccccccC-CCCcEEEeeccCCCChhHHHHHHHHH-----HHHHh---h-cCCCCCCCceEEEEEee--cCCCceEEE
Q psy1758 194 SEQVIPEEYG-GASPFISISAKTGVGINKLLENISLQ-----AEILE---L-KAPVTTPAKGVIIESRL--DKGKGPVAT 261 (1527)
Q Consensus 194 ~~~~~~~~~~-~~~~v~~iSAktg~gI~eL~~~l~~~-----~~~~~---~-~~~~~~p~~~~v~~~~~--~~~~G~v~~ 261 (1527)
....+..+++ ....++|+||+.|.||-.--+.+-+. .+.++ . ......|++..|.-+.. ...+| ..
T Consensus 165 dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRG--ya 242 (431)
T COG2895 165 DYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRG--YA 242 (431)
T ss_pred HHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhccccccccccceeeceEEecCCCCcccc--cc
Confidence 4444444443 33589999999999987544333211 11111 1 11223456665555433 23444 35
Q ss_pred EEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcceEecCCCCCC-CCCCeEEEeCChhH
Q psy1758 262 VLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPVEIQGLTKVP-FSGEELFVILNEKK 327 (1527)
Q Consensus 262 ~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~-~~G~~~~~~~~e~~ 327 (1527)
+++.+|++++||.|++-|+ ..+|++|..++| +.++|.+|++|.+.--+++. .+||.+....+...
T Consensus 243 GtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg-~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~~~ 310 (431)
T COG2895 243 GTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG-ELAQASAGEAVTLVLADEIDISRGDLIVAADAPPA 310 (431)
T ss_pred eeeeccceecCCeEEEccCCCeeeEEEEeccCC-chhhccCCceEEEEEcceeecccCcEEEccCCCcc
Confidence 6789999999999988554 579999999887 68999999999998667777 79998887765543
No 151
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.4e-23 Score=226.42 Aligned_cols=252 Identities=29% Similarity=0.354 Sum_probs=187.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc----------------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN----------------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~----------------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 131 (1527)
.-.+|..+||+|||||||..+++..- .......|||++.....++..++.+-.+|+|||.+|.+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 34679999999999999998875321 12334469999999999999999999999999999999
Q ss_pred HHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcc-hhHHH----HHHHhhhcccccccCCC
Q psy1758 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDI-NLDRI----KQDLISEQVIPEEYGGA 205 (1527)
Q Consensus 132 ~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~-~~~~~----~~~l~~~~~~~~~~~~~ 205 (1527)
++..++.+.|++|||++|+||.+|||++++..++..++| +++++||+|+.+. +..+. ..++.....+ -+..
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f---~gd~ 167 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF---PGDD 167 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC---CCCC
Confidence 999999999999999999999999999999999999998 8899999999872 21111 1122211111 1356
Q ss_pred CcEEEeeccCCC--------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEe
Q psy1758 206 SPFISISAKTGV--------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVA 277 (1527)
Q Consensus 206 ~~v~~iSAktg~--------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~ 277 (1527)
.|++..||+.-- .|.+|++++..+ +..+..+.+.|+...|-+++...++|++++++|.+|+|++|+++.+
T Consensus 168 ~Pii~gSal~ale~~~~~~~~i~eLm~avd~y--ip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~evei 245 (394)
T COG0050 168 TPIIRGSALKALEGDAKWEAKIEELMDAVDSY--IPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEI 245 (394)
T ss_pred cceeechhhhhhcCCcchHHHHHHHHHHHHhc--CCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEE
Confidence 799999987532 345666665422 2334455678999999999999999999999999999999999865
Q ss_pred -cce---eeeEeEeeccCC-ceeeecCCCcceEecCCCCCC-CCCCeEEEeCC
Q psy1758 278 -GAS---YGRIRSMLNENG-KNILEAGPSIPVEIQGLTKVP-FSGEELFVILN 324 (1527)
Q Consensus 278 -g~~---~~kVr~i~~~~g-~~v~~a~~~~~v~I~gl~~~~-~~G~~~~~~~~ 324 (1527)
|-. ...+..+..... ..-..|+++..+-+.|.++-. .+|+++..=.+
T Consensus 246 vG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgs 298 (394)
T COG0050 246 VGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGS 298 (394)
T ss_pred ecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCCc
Confidence 433 223332221111 123457777788888887655 68887765433
No 152
>PRK12739 elongation factor G; Reviewed
Probab=99.90 E-value=1.6e-22 Score=262.32 Aligned_cols=301 Identities=22% Similarity=0.230 Sum_probs=228.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+-.+|+|+||+|||||||+++|..... ......|+|++.....+.|++.+++|||||||.+|
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 456899999999999999999964211 01135689999999999999999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----------- 198 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----------- 198 (1527)
...+.++++.+|++++|+|+.+++..|+..++..+...++|+|+++||+|+...+......++......
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iPis~ 166 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPIGA 166 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEecccc
Confidence 999999999999999999999999999999999999999999999999999865443333322211000
Q ss_pred ------------------cc------------------------------------------------------------
Q psy1758 199 ------------------PE------------------------------------------------------------ 200 (1527)
Q Consensus 199 ------------------~~------------------------------------------------------------ 200 (1527)
..
T Consensus 167 ~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~~~ 246 (691)
T PRK12739 167 EDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIRKA 246 (691)
T ss_pred cccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 00
Q ss_pred -ccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHh-----------------hcCCCCCCCceEEEEEeecCCCceEEEE
Q psy1758 201 -EYGGASPFISISAKTGVGINKLLENISLQAEILE-----------------LKAPVTTPAKGVIIESRLDKGKGPVATV 262 (1527)
Q Consensus 201 -~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~-----------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~ 262 (1527)
..+..+|++..||.++.|++.|++.|......+. ...+++.|+.++|++...+++.|.++++
T Consensus 247 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~ 326 (691)
T PRK12739 247 TINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLTFF 326 (691)
T ss_pred HHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEEEE
Confidence 0012358999999999999999999985431110 0113456788999999999999999999
Q ss_pred EeeccEEEeccEEEecce--eeeE---eEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhh
Q psy1758 263 LIQSGTLRCSDIVVAGAS--YGRI---RSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQG 337 (1527)
Q Consensus 263 ~v~~G~l~~gd~vv~g~~--~~kV---r~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~ 337 (1527)
+|++|+|+.||.|..... ..+| ..+......++.++.+|+.+.|.|++.. ..||.+..-...
T Consensus 327 RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~------------ 393 (691)
T PRK12739 327 RVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT-TTGDTLCDEKAP------------ 393 (691)
T ss_pred EEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcc-cCCCEEeCCCCc------------
Confidence 999999999999975432 2344 4454555577899999999999999876 889988522110
Q ss_pred chHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 338 KFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
..+.. +. -....+.+-|.+........+.++|.++......+.|
T Consensus 394 ------------~~l~~----~~-~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v 437 (691)
T PRK12739 394 ------------IILES----ME-FPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRV 437 (691)
T ss_pred ------------cccCC----CC-CCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEE
Confidence 00011 10 1135577888899999999999999999766656666
No 153
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.90 E-value=1.2e-22 Score=253.01 Aligned_cols=301 Identities=21% Similarity=0.265 Sum_probs=220.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-cc---------------------cccCCceeEEEEEEEEEeCCeEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-VV---------------------FSEAGGITQHIGAYNVVTNHGSITFLDTP 124 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~---------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTP 124 (1527)
.+..+|+|+||+|+|||||+++|.... .. .....|+|.......+.+++.+++|||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456789999999999999999985311 10 11124788888888899999999999999
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc------
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI------ 198 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~------ 198 (1527)
||.+|.....++++.+|++|+|+|+.+++..++..++..+...++|+++++||+|+...+..+....+......
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~~ 168 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPIT 168 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccEE
Confidence 99999999999999999999999999999999999999888889999999999999765544332222110000
Q ss_pred ----------------------------------------------------------------cc----------ccCC
Q psy1758 199 ----------------------------------------------------------------PE----------EYGG 204 (1527)
Q Consensus 199 ----------------------------------------------------------------~~----------~~~~ 204 (1527)
.+ ..+.
T Consensus 169 ~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~ 248 (527)
T TIGR00503 169 WPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGGE 248 (527)
T ss_pred EEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcCC
Confidence 00 0123
Q ss_pred CCcEEEeeccCCCChhHHHHHHHHHHHHHhhc-------CCCCCCCceEEEEEee--c-CCCceEEEEEeeccEEEeccE
Q psy1758 205 ASPFISISAKTGVGINKLLENISLQAEILELK-------APVTTPAKGVIIESRL--D-KGKGPVATVLIQSGTLRCSDI 274 (1527)
Q Consensus 205 ~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~-------~~~~~p~~~~v~~~~~--~-~~~G~v~~~~v~~G~l~~gd~ 274 (1527)
.+|+|+.||.++.||+.|++.+......+... .+.+.++.++|+++.. + +..|++++++|.+|+++.|+.
T Consensus 249 ~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~ 328 (527)
T TIGR00503 249 MTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMK 328 (527)
T ss_pred eeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCE
Confidence 46899999999999999999998654211100 1124578999999987 7 589999999999999999999
Q ss_pred EEecce--eeeEeEee---ccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhh
Q psy1758 275 VVAGAS--YGRIRSML---NENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKL 349 (1527)
Q Consensus 275 vv~g~~--~~kVr~i~---~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~ 349 (1527)
|....+ ..|+..++ ..+...+.+|.||+.+.+.+++.. ..||.+.. .. + +. +.
T Consensus 329 v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~-~~GDtl~~-~~-~----~~-~~-------------- 386 (527)
T TIGR00503 329 LKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI-QIGDTFTQ-GE-K----IK-FT-------------- 386 (527)
T ss_pred EEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCc-ccCCEecC-CC-c----ee-ec--------------
Confidence 976433 34555554 444567899999999999998776 78998853 11 0 10 00
Q ss_pred hhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 350 HKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
. + ..-.+.+..-|.+...+..+.+..+|.+|..+.. +++-
T Consensus 387 ----~----i-~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~ 426 (527)
T TIGR00503 387 ----G----I-PNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVF 426 (527)
T ss_pred ----C----C-CCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEE
Confidence 0 0 0112345666777788888888888888865553 5553
No 154
>PRK13351 elongation factor G; Reviewed
Probab=99.90 E-value=2.6e-22 Score=261.22 Aligned_cols=302 Identities=25% Similarity=0.318 Sum_probs=228.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+-.+|+|+||+|||||||+++|...... .....++|+......+.|++..++|||||||.+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 3468999999999999999999753210 0113577888888889999999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----------- 198 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----------- 198 (1527)
..++..+++.+|++++|+|++++...++...|..+...++|+++|+||+|+..++......++......
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P~~~ 166 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIGS 166 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 999999999999999999999999999999999998899999999999999876654444433211000
Q ss_pred --------------------------------c--------------------------------c--------------
Q psy1758 199 --------------------------------P--------------------------------E-------------- 200 (1527)
Q Consensus 199 --------------------------------~--------------------------------~-------------- 200 (1527)
+ .
T Consensus 167 ~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~ 246 (687)
T PRK13351 167 EDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLREG 246 (687)
T ss_pred CCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 0 0
Q ss_pred -ccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhh----------------cCCCCCCCceEEEEEeecCCCceEEEEE
Q psy1758 201 -EYGGASPFISISAKTGVGINKLLENISLQAEILEL----------------KAPVTTPAKGVIIESRLDKGKGPVATVL 263 (1527)
Q Consensus 201 -~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~----------------~~~~~~p~~~~v~~~~~~~~~G~v~~~~ 263 (1527)
..+..+|++..||++|.|++.|++.|......+.. ..+++.|+.++|++...+++.|.+++++
T Consensus 247 ~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~R 326 (687)
T PRK13351 247 TRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYLR 326 (687)
T ss_pred HHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEEE
Confidence 00125689999999999999999999864321110 1133567889999999999999999999
Q ss_pred eeccEEEeccEEEecce--e---eeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhc
Q psy1758 264 IQSGTLRCSDIVVAGAS--Y---GRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGK 338 (1527)
Q Consensus 264 v~~G~l~~gd~vv~g~~--~---~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~ 338 (1527)
|++|+|+.||.|.+... . +++..+......++.++.+|+.+.|.|++.. ..|+.+.......
T Consensus 327 V~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~~------------ 393 (687)
T PRK13351 327 VYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL-ETGDTLHDSADPV------------ 393 (687)
T ss_pred EeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccC-ccCCEEeCCCCcc------------
Confidence 99999999999987542 2 3555555555678899999999999999877 6799885322100
Q ss_pred hHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 339 FRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
.+.. + ......+.+-|.+......+.|.++|.++..+...+.|-
T Consensus 394 ------------~~~~----~-~~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~ 437 (687)
T PRK13351 394 ------------LLEL----L-TFPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVE 437 (687)
T ss_pred ------------ccCC----C-CCCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEE
Confidence 0000 0 012245777889999999999999999997666566663
No 155
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.90 E-value=2.6e-23 Score=241.06 Aligned_cols=142 Identities=31% Similarity=0.463 Sum_probs=131.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
||+|+||+|+|||||+++|++.+|.+.+.+.+. .+++|..+.|++||+|+.+....+.|++++++|||||||.+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 699999999999999999999888877665553 367899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHH
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~ 1065 (1527)
+.++++.+|++++|+|++.|...++..+|+.+...++|.++|+||+|+..+++++.++++++.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~ 144 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAF 144 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888888888887765
No 156
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.1e-22 Score=251.45 Aligned_cols=302 Identities=26% Similarity=0.312 Sum_probs=230.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCC-eEEEEEeCCChh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNH-GSITFLDTPGHE 127 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~-~~i~~iDTPG~e 127 (1527)
.+-.+|+|+||.+||||||.++|...... .....|+|+......+.|.+ ++++|||||||-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 45678999999999999999998543221 12235999999999999996 999999999999
Q ss_pred hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhh------------
Q psy1758 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISE------------ 195 (1527)
Q Consensus 128 ~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~------------ 195 (1527)
+|.....++++.+|++|+|+|+.+|+++||...|+++...++|.++++||+|+..++......++...
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~pI 167 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLPI 167 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999875543332222100
Q ss_pred --------------------c----------------------------------ccccc-c------------------
Q psy1758 196 --------------------Q----------------------------------VIPEE-Y------------------ 202 (1527)
Q Consensus 196 --------------------~----------------------------------~~~~~-~------------------ 202 (1527)
. ...+. .
T Consensus 168 g~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~ 247 (697)
T COG0480 168 GAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGT 247 (697)
T ss_pred cCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHhh
Confidence 0 00000 0
Q ss_pred --CCCCcEEEeeccCCCChhHHHHHHHHHHHHH-h-----------------hcCCCCCCCceEEEEEeecCCCceEEEE
Q psy1758 203 --GGASPFISISAKTGVGINKLLENISLQAEIL-E-----------------LKAPVTTPAKGVIIESRLDKGKGPVATV 262 (1527)
Q Consensus 203 --~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~-~-----------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~ 262 (1527)
+...|+++.||.++.|++.|++.+......+ + ...+.+.|+.+++++...++..|.++.+
T Consensus 248 ~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~ 327 (697)
T COG0480 248 IAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFV 327 (697)
T ss_pred hccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEEEE
Confidence 1257999999999999999999998543111 0 0223467899999999999999999999
Q ss_pred EeeccEEEeccEEEeccee--eeEeEeec---cCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhh
Q psy1758 263 LIQSGTLRCSDIVVAGASY--GRIRSMLN---ENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQG 337 (1527)
Q Consensus 263 ~v~~G~l~~gd~vv~g~~~--~kVr~i~~---~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~ 337 (1527)
+|++|+|+.|++++++... .||..+.. +...++.++.+|+.+.+.|++.. ..|+.+...+ ...
T Consensus 328 RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~-~tGdTl~~~~-~~v---------- 395 (697)
T COG0480 328 RVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA-TTGDTLCDEN-KPV---------- 395 (697)
T ss_pred EEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEccccc-ccCCeeecCC-Ccc----------
Confidence 9999999999999887543 55555544 44467889999999999999987 7999887554 210
Q ss_pred chHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 338 KFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
.++.+.. ..+.+.+-|.+..-...+.+..+|..+..++..+.+
T Consensus 396 -------------~~~~~~~-----pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v 438 (697)
T COG0480 396 -------------ILESMEF-----PEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRV 438 (697)
T ss_pred -------------ccccccC-----CCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEE
Confidence 0111110 124456667777888888888889888665545554
No 157
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=9.5e-23 Score=221.53 Aligned_cols=174 Identities=40% Similarity=0.555 Sum_probs=145.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-----cCeEEEEEeCCCCCC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-----NGTRINIIDTPGHAD 997 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-----~~~~iniiDTPGh~d 997 (1527)
|||+++||+|+|||||+++|++..+.+.+.+. ...++|..+.|+++|+|+..+...+.| +++.++|||||||.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM-KEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC-ceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 79999999999999999999998777665433 346788999999999999988887766 467899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+.+.+.....+++.+.+ +.. ..
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~---~~~----~~ 152 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVL---GLD----PS 152 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHh---CCC----cc
Confidence 99999999999999999999999988888888888778899999999999997655444444444322 111 12
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
+++++||++|. |+++|++.+.+.+|+|
T Consensus 153 ~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 153 EAILVSAKTGL----------GVEDLLEAIVERIPPP 179 (179)
T ss_pred cEEEeeccCCC----------CHHHHHHHHHhhCCCC
Confidence 48999999998 9999999999999877
No 158
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.89 E-value=7.8e-23 Score=229.03 Aligned_cols=190 Identities=32% Similarity=0.454 Sum_probs=148.3
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccc---cccccceecchhhhhcccceeEeeeeEEEEec-----CeEEEEEeCCC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRK---NQNINARIMDSNEIEKERGITIFSKNCSIEYN-----GTRINIIDTPG 994 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~---~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----~~~iniiDTPG 994 (1527)
|||+|+||+|||||||+++|++.++...+ ......+++|..+.|+++|+|+......+.|. .+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 79999999999999999999998877653 22233468899999999999999998888775 37899999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-----------ChhhhHHHHHH
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-----------RPEWVVDATFD 1063 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-----------~~~~v~~~~~~ 1063 (1527)
|.+|...+.+++..+|++|+|+|+.++...++..+++.+...++|.++|+||+|+... ...+.++++..
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999889988888888888999999999998521 12223333333
Q ss_pred HHhhhcccccccCCc----EEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1064 LFDKLCATEEQLDFP----VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~p----vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+..........-+| +++.||+.||+. +.. .-.++.+|+++|.+++|+|
T Consensus 161 ~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~-~~~-~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCF-TLE-SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHhcCCCceEeccCCCeEEEEecCCCeEE-ecH-HHHhhhhHHHHHHhhCCCC
Confidence 333333222111244 889999999953 211 1135669999999999987
No 159
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.89 E-value=4.9e-22 Score=255.88 Aligned_cols=250 Identities=22% Similarity=0.270 Sum_probs=180.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccc---------------------------------cccCCceeEEEEEEEEEeCC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVV---------------------------------FSEAGGITQHIGAYNVVTNH 115 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~---------------------------------~~~~~giT~~~~~~~~~~~~ 115 (1527)
..+|+++||+|+|||||+++|...... .....|+|++.....+.+++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 357999999999999999998753211 11125788999988999999
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhHHHHHHHhh
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV-PLIVAINKIDKLDINLDRIKQDLIS 194 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~~~~~~l~~ 194 (1527)
.+++|+|||||++|...+..++..+|++++|+|+++|+.+|+.+++..+...++ |+|||+||+|+.+.+.+.......+
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~ 183 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVAD 183 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHH
Confidence 999999999999999988899999999999999999999999999998888886 5889999999975333222111111
Q ss_pred hcccccccC-CCCcEEEeeccCCCChhH------------HHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEE
Q psy1758 195 EQVIPEEYG-GASPFISISAKTGVGINK------------LLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVAT 261 (1527)
Q Consensus 195 ~~~~~~~~~-~~~~v~~iSAktg~gI~e------------L~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~ 261 (1527)
.......++ ...+++++||++|.|+++ |++.|.. ........+.|++..|...+.....+.-+.
T Consensus 184 i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~---~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~ 260 (632)
T PRK05506 184 YRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET---VEIASDRNLKDFRFPVQYVNRPNLDFRGFA 260 (632)
T ss_pred HHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc---CCCCCCcCCCCceeeEEEEEecCCCceEEE
Confidence 100011111 246899999999999985 4433321 111122245688877777654322222257
Q ss_pred EEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEecCCCCCC-CCCCeEEEe
Q psy1758 262 VLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVP-FSGEELFVI 322 (1527)
Q Consensus 262 ~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~-~~G~~~~~~ 322 (1527)
|+|.+|+|++||.|++++ ...+|++|+.+ +..+.+|.||+.+.+..-.... .+|+++...
T Consensus 261 G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~ 323 (632)
T PRK05506 261 GTVASGVVRPGDEVVVLPSGKTSRVKRIVTP-DGDLDEAFAGQAVTLTLADEIDISRGDMLARA 323 (632)
T ss_pred EEEecceeecCCEEEEcCCCceEEEEEEEEC-CceeCEEcCCCeEEEEecCccccCCccEEecC
Confidence 899999999999999865 45799999765 4569999999999887432222 678877643
No 160
>PRK12740 elongation factor G; Reviewed
Probab=99.88 E-value=1.6e-21 Score=253.62 Aligned_cols=296 Identities=26% Similarity=0.303 Sum_probs=225.8
Q ss_pred EecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhh
Q psy1758 75 MGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARG 136 (1527)
Q Consensus 75 vG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~ 136 (1527)
+||+|||||||+++|...... .....|+|+......+.+++..++|||||||.+|...+.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999433211 12236899999999999999999999999999999999999
Q ss_pred ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc------------------
Q psy1758 137 AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI------------------ 198 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~------------------ 198 (1527)
++.+|++++|+|++++...++...+..+...++|+++|+||+|+...+.......+......
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 99999999999999999999999999998899999999999999865544443333221000
Q ss_pred ----------------------c-------------------------------------c----------ccCCCCcEE
Q psy1758 199 ----------------------P-------------------------------------E----------EYGGASPFI 209 (1527)
Q Consensus 199 ----------------------~-------------------------------------~----------~~~~~~~v~ 209 (1527)
+ + ..+..+|++
T Consensus 161 id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~ 240 (668)
T PRK12740 161 VDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVF 240 (668)
T ss_pred EECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 0 0 001346899
Q ss_pred EeeccCCCChhHHHHHHHHHHHHHh---------------hcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccE
Q psy1758 210 SISAKTGVGINKLLENISLQAEILE---------------LKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDI 274 (1527)
Q Consensus 210 ~iSAktg~gI~eL~~~l~~~~~~~~---------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~ 274 (1527)
.+||++|.|++.|++.|......+. ...+++.|+.++|++...+++.|.++.++|++|+|++||.
T Consensus 241 ~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~ 320 (668)
T PRK12740 241 CGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDT 320 (668)
T ss_pred eccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCE
Confidence 9999999999999999975421111 0113356788999999999999999999999999999999
Q ss_pred EEecce-----eeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhh
Q psy1758 275 VVAGAS-----YGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKL 349 (1527)
Q Consensus 275 vv~g~~-----~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~ 349 (1527)
|.+++. .++|..+...+..++.++.+|+.+.|.|++.+ ..|+.+.......
T Consensus 321 v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdtl~~~~~~~----------------------- 376 (668)
T PRK12740 321 LYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA-ATGDTLCDKGDPI----------------------- 376 (668)
T ss_pred EEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCcc-CCCCEEeCCCCcc-----------------------
Confidence 988653 23555555556678999999999999999764 7899885221100
Q ss_pred hhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEe
Q psy1758 350 HKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIH 400 (1527)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~ 400 (1527)
.+.. +. ...+.+.+.|.+...+..+.|.++|.++..+...++|..
T Consensus 377 -~~~~----~~-~~~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~ 421 (668)
T PRK12740 377 -LLEP----ME-FPEPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVER 421 (668)
T ss_pred -ccCC----CC-CCCcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEE
Confidence 0000 11 123568889999999999999999999987776777743
No 161
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=3.1e-22 Score=222.44 Aligned_cols=166 Identities=31% Similarity=0.339 Sum_probs=135.8
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-------------------
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------------------- 983 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~------------------- 983 (1527)
+||||+||+|||||||+++|... .+|..+.|.+||+|+......+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 48999999999999999999432 2477888999999999988887775
Q ss_pred --------C------eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-CChhHHHHHHHHHHcCCc-cEEEEecc
Q psy1758 984 --------G------TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGFK-PIVVVNKI 1047 (1527)
Q Consensus 984 --------~------~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-~~~qt~~~~~~~~~~glp-~IvviNKi 1047 (1527)
+ ++++|||||||.+|..++.+++..+|++++|+|+.++ +.+|+..++..+...+++ +++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 3 7899999999999999999999999999999999984 778999999888877874 67899999
Q ss_pred CCCCC-ChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1048 DRSNA-RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1048 D~~~a-~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
|+.+. ......+++++.+.... ...+|++++||++|. |++.|++.+.+.+|.|+
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~vSA~~g~----------gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTI----AENAPIIPISAQLKY----------NIDVLLEYIVKKIPTPP 202 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccc----cCCCcEEEEeCCCCC----------CHHHHHHHHHHhCCCCC
Confidence 99653 22333444444432211 124689999999998 99999999999999875
No 162
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=4.7e-22 Score=219.12 Aligned_cols=173 Identities=27% Similarity=0.290 Sum_probs=141.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--------------CeEEEE
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--------------GTRINI 989 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--------------~~~ini 989 (1527)
||+++||+|+|||||+++|+...+ ...+|....|++||+|+.....++.+. ++.+++
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITL 72 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEE
Confidence 899999999999999999986521 234688889999999999998888876 789999
Q ss_pred EeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-ChhhhHHHHHHHHhhh
Q psy1758 990 IDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 990 iDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~v~~~~~~~~~~l 1068 (1527)
||||||.+|...+.+++..+|++++|+|+.+|+..++...+..+...+.|+++|+||+|+... ..+...+++.+.+...
T Consensus 73 ~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 73 VDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999989999999999999999999999988777777789999999999999743 2334455555443321
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
-.......+|++++||++|. |+++|++.+.+.+|+|.
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~----------gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGG----------GEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHhcCcCCCCEEEEeccCCC----------CHHHHHHHHHhcccccc
Confidence 11011235789999999998 99999999999999874
No 163
>KOG0460|consensus
Probab=99.87 E-value=8.3e-22 Score=218.28 Aligned_cols=252 Identities=30% Similarity=0.328 Sum_probs=184.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc----------------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN----------------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~----------------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 131 (1527)
...+|.-+||++||||||..+++... .......|||++.....++...+.+--+|+|||.+|.+
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 34578999999999999998885421 12334469999998888888888999999999999999
Q ss_pred HHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCc-chhHHHHH-HHhhhcccccccCCCCcE
Q psy1758 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLD-INLDRIKQ-DLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 132 ~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~-~~~~~~~~-~l~~~~~~~~~~~~~~~v 208 (1527)
++..++.+.|++|||++++||.+|||+|++..++.-+++ +++++||.|+.+ ++.-+..+ ++.+......-.+.++|+
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~Pv 212 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPV 212 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCe
Confidence 999999999999999999999999999999999999998 899999999984 22211111 111111111112567899
Q ss_pred EEeeccC---C----CC---hhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEe-
Q psy1758 209 ISISAKT---G----VG---INKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVA- 277 (1527)
Q Consensus 209 ~~iSAkt---g----~g---I~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~- 277 (1527)
+..||+. | .| |..|++++-.. +..+....+.|+...|-+.+..+|+|+|+++++.+|+|++||++-+
T Consensus 213 I~GSAL~ALeg~~peig~~aI~kLldavDsy--ip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eiv 290 (449)
T KOG0460|consen 213 IRGSALCALEGRQPEIGLEAIEKLLDAVDSY--IPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIV 290 (449)
T ss_pred eecchhhhhcCCCccccHHHHHHHHHHHhcc--CCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEe
Confidence 9998864 3 23 44455544321 3334455678999899999999999999999999999999999855
Q ss_pred ccee---eeEeEeeccCCceeeecCCCcce--EecCCCCCC-CCCCeEEEe
Q psy1758 278 GASY---GRIRSMLNENGKNILEAGPSIPV--EIQGLTKVP-FSGEELFVI 322 (1527)
Q Consensus 278 g~~~---~kVr~i~~~~g~~v~~a~~~~~v--~I~gl~~~~-~~G~~~~~~ 322 (1527)
|... ..|..+. .-++.+++|.+|+-+ -+.|++.-+ .+|.++..-
T Consensus 291 G~~~~lkttvtgie-mF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~p 340 (449)
T KOG0460|consen 291 GHNKTLKTTVTGIE-MFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKP 340 (449)
T ss_pred ccCcceeeEeehHH-HHHHHHHhcccccceehhhhcCCHHHHhcccEEecC
Confidence 4332 3444443 233567777777654 456777554 677766543
No 164
>PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A.
Probab=99.87 E-value=1.4e-22 Score=199.69 Aligned_cols=104 Identities=39% Similarity=0.696 Sum_probs=93.3
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhccccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHI 620 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~l 620 (1527)
|..|.++.+++.|++++..+++||++.++|||+|++|+|+++|+|||++++++.+.++++++|++++||||+.||++|+|
T Consensus 1 R~~Rv~~~i~~~i~~il~~~~~d~~l~~vtIt~V~ls~Dl~~a~Vy~~~~~~~~~~~~~~~~L~~~~~~iR~~l~~~l~l 80 (104)
T PF02033_consen 1 RQQRVESLIQREISEILQREIKDPRLKLVTITRVELSPDLSHAKVYVSILGDEEEQEEVLEALNKAAGFIRHELAKRLNL 80 (104)
T ss_dssp THHHHHHHHHHHHHHHHCTCTSSCGHHCEEEEEEEECTTSSEEEEEEEESSSHHHHHHHHHHHHHTHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHHHHHhhccCcCcceEEEEEEEECCCCCEEEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 45688899999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred ccCCeEEEEeccchhhHHHHHHHH
Q psy1758 621 HTLPILNFFYDNSIENAMMISKLI 644 (1527)
Q Consensus 621 r~~P~l~F~~D~s~~~~~~i~~ll 644 (1527)
|++|+|+|++|+++|++.+|++||
T Consensus 81 r~~P~L~F~~D~~~e~~~~i~~ll 104 (104)
T PF02033_consen 81 RRVPELRFVYDDSIEKAARIEKLL 104 (104)
T ss_dssp SSG-EEEEEESTTTSSS------S
T ss_pred CcCCEEEEEECCCHHHHHHHHHhC
Confidence 999999999999999999999986
No 165
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=8e-22 Score=216.55 Aligned_cols=161 Identities=36% Similarity=0.540 Sum_probs=132.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEE--eCCeEEEEEeCCChhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVV--TNHGSITFLDTPGHEA 128 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~--~~~~~i~~iDTPG~e~ 128 (1527)
-.+|+++||+|||||||+++|...... .....++|.+.....+. +.+..++|+|||||.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 357999999999999999999754421 12335889999899998 8999999999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccC--CCC
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYG--GAS 206 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~--~~~ 206 (1527)
|...+.++++.+|++|+|+|+.+|...++.+++..+...++|+|+|+||+|+...+..+...++.........+. ..+
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIV 162 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTE
T ss_pred eeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccc
Confidence 999999999999999999999999999999999999999999999999999986555555554443222112222 257
Q ss_pred cEEEeeccCCCChhHHHHHHHHH
Q psy1758 207 PFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 207 ~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
|++++||++|.|+++|++.|...
T Consensus 163 ~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 163 PVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHh
Confidence 99999999999999999999643
No 166
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.86 E-value=9.9e-21 Score=246.77 Aligned_cols=303 Identities=24% Similarity=0.273 Sum_probs=215.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc----------------cccCCceeEEEEEEEEEe----CCeEEEEEeCCChh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV----------------FSEAGGITQHIGAYNVVT----NHGSITFLDTPGHE 127 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~----------------~~~~~giT~~~~~~~~~~----~~~~i~~iDTPG~e 127 (1527)
+-.+|+++||+|||||||+++|...... .....|+|++.....+.| .+..++|+|||||.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4568999999999999999998653211 112247787777655554 46789999999999
Q ss_pred hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh----HHHHHHHh----------
Q psy1758 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL----DRIKQDLI---------- 193 (1527)
Q Consensus 128 ~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~----~~~~~~l~---------- 193 (1527)
+|...+.++++.+|++|+|+|+.+|+..++..+|..+...+.|+|+++||+|+..++. ......+.
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l 178 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLI 178 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888999999999999874321 11111110
Q ss_pred h-hc--cccccc---CCCCcEEEeeccCCCChh----------------------------------HHHHHHHHHHHHH
Q psy1758 194 S-EQ--VIPEEY---GGASPFISISAKTGVGIN----------------------------------KLLENISLQAEIL 233 (1527)
Q Consensus 194 ~-~~--~~~~~~---~~~~~v~~iSAktg~gI~----------------------------------eL~~~l~~~~~~~ 233 (1527)
. .. .....| .....++..||+.+.++. .|++.|......+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP 258 (731)
T PRK07560 179 KGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNP 258 (731)
T ss_pred HHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCCh
Confidence 0 00 000011 112346778999988876 5666665422111
Q ss_pred h-----------------------hcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEee
Q psy1758 234 E-----------------------LKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSML 288 (1527)
Q Consensus 234 ~-----------------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~ 288 (1527)
. ...+++.|+.++|++...+++.|.+++++|++|+|++||.|.+.. ...+|..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~ 338 (731)
T PRK07560 259 IEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVG 338 (731)
T ss_pred hhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheeh
Confidence 0 001234578899999999999999999999999999999997633 345777776
Q ss_pred ccC---CceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccce
Q psy1758 289 NEN---GKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVK 365 (1527)
Q Consensus 289 ~~~---g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1527)
... ..++.++.+|+.+.|.|++.. ..|+++....... .+.. +.....+
T Consensus 339 ~~~g~~~~~v~~a~AGdIv~i~gl~~~-~~GdtL~~~~~~~------------------------~~~~----~~~~p~P 389 (731)
T PRK07560 339 IYMGPEREEVEEIPAGNIAAVTGLKDA-RAGETVVSVEDMT------------------------PFES----LKHISEP 389 (731)
T ss_pred hhhcCCCceeeeECCCCEEEEEccccc-ccCCEEeCCCccc------------------------cccc----cccCCCC
Confidence 543 467899999999999998766 5799875321100 0000 0011235
Q ss_pred eEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 366 NLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 366 ~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
.+.+-|.+...+..+.|.++|.++..+...+.|-
T Consensus 390 v~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~ 423 (731)
T PRK07560 390 VVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVK 423 (731)
T ss_pred eEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEE
Confidence 6778899999999999999999997666666663
No 167
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.86 E-value=2e-21 Score=218.10 Aligned_cols=178 Identities=22% Similarity=0.243 Sum_probs=140.2
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeE------------------------E
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC------------------------S 979 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~------------------------~ 979 (1527)
+|+++||+++|||||+++|.. +.+..........+|.+..|.++|+|+..... .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 488999999999999999985 34444333344678999999999999754432 2
Q ss_pred EEecCeEEEEEeCCCCCCchHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-Chhh
Q psy1758 980 IEYNGTRINIIDTPGHADFGGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEW 1056 (1527)
Q Consensus 980 ~~~~~~~iniiDTPGh~df~~ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~ 1056 (1527)
++..++.++|+|||||.+|..++.+++. .+|++++|||+.+|+.+|++.++..+...++|+++|+||+|+.+. +..+
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHH
Confidence 3345789999999999999999999986 799999999999999999999999999999999999999998654 3556
Q ss_pred hHHHHHHHHhhhccc-------------------ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1057 VVDATFDLFDKLCAT-------------------EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1057 v~~~~~~~~~~l~~~-------------------~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..+++.+.+...+.. ......|++++||.+|. |++.|+..| ..+|+|
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~----------Gi~~L~~~L-~~lp~~ 224 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE----------GLDLLHAFL-NLLPLR 224 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc----------CHHHHHHHH-HhcCCC
Confidence 666666665432211 11123599999999998 997777665 778764
No 168
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.85 E-value=1.9e-20 Score=244.05 Aligned_cols=247 Identities=23% Similarity=0.178 Sum_probs=186.4
Q ss_pred CCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe------------------EEEEEeCCCCC
Q psy1758 935 KTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT------------------RINIIDTPGHA 996 (1527)
Q Consensus 935 KTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~------------------~iniiDTPGh~ 996 (1527)
||||+++|.+..- ..+...|||.+...+.+.++.. .++|||||||.
T Consensus 474 KTtLLD~iR~t~v----------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKIRKTRV----------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHHhCCCc----------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 9999999965411 1233478888887777776521 28999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC-CCCh--------------hhhHHHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-NARP--------------EWVVDAT 1061 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~-~a~~--------------~~v~~~~ 1061 (1527)
+|.....++++.+|++++|+|+++|+++||..++..+...++|+++|+||+|+. +++. +++.+++
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el 617 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTEL 617 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHH
Confidence 999988888999999999999999999999999999999999999999999985 4331 2233333
Q ss_pred HHH-------Hhhhccc--------ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC-----CCCCCCCCC
Q psy1758 1062 FDL-------FDKLCAT--------EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP-----VHKDNSNNP 1121 (1527)
Q Consensus 1062 ~~~-------~~~l~~~--------~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp-----~p~~~~~~p 1121 (1527)
... |.+.+.. +..-.+|++++||++|. |+++|+++|....+ ....+++.|
T Consensus 618 ~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe----------GId~Ll~~l~~l~~~~l~~~L~~~~~~~ 687 (1049)
T PRK14845 618 EIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE----------GIPELLMMVAGLAQKYLEERLKLNVEGY 687 (1049)
T ss_pred HHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC----------CHHHHHHHHHHhhHHhhhhhhccCCCCc
Confidence 221 1122111 11235799999999998 99999988864432 234456789
Q ss_pred ceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEee--------cCceeEeeeeecCCEEE
Q psy1758 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK--------GLDRVLVNEALSGDIVL 1193 (1527)
Q Consensus 1122 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~--------g~~~~~v~~a~AGdIva 1193 (1527)
+++.|..++.+++.|.++.|.|.+|+|++||.|.+.+. ++ +...||..|.... +.+...++++.|+.-|-
T Consensus 688 ~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~-~~-~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vk 765 (1049)
T PRK14845 688 AKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGP-DD-VIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVK 765 (1049)
T ss_pred eEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccC-CC-cceEEEEEecCcccccccccccccccccccccCCCceE
Confidence 99999999999999999999999999999999999876 22 3456788776431 11345678888877776
Q ss_pred Ee--cceecccCCeeeCC
Q psy1758 1194 IT--GIEEICIGSTICDP 1209 (1527)
Q Consensus 1194 i~--gl~~~~iGdTi~~~ 1209 (1527)
|+ |++++..||.+.-.
T Consensus 766 i~a~gl~~~~aG~~~~v~ 783 (1049)
T PRK14845 766 IAAPGLEEVLAGSPIRIV 783 (1049)
T ss_pred EecCCccccCCCCeEEEe
Confidence 64 88888778887543
No 169
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=2.3e-20 Score=200.26 Aligned_cols=161 Identities=63% Similarity=0.917 Sum_probs=133.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC---CeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN---HGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~---~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
|+|+++|++|+|||||+++|....+.....+++|++.....+... +..++||||||++.|..++..++..+|++++|
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v 80 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence 579999999999999999999988877777789998887777775 66899999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccc-cccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIP-EEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~-~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
+|++++...++.+.+..+...++|+++|+||+|+...+.......+....... +.++..++++++||++|.|+++|+++
T Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T cd01887 81 VAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEA 160 (168)
T ss_pred EECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHH
Confidence 99999888888888888888899999999999997654444433333222111 13444579999999999999999999
Q ss_pred HHHHH
Q psy1758 226 ISLQA 230 (1527)
Q Consensus 226 l~~~~ 230 (1527)
|....
T Consensus 161 l~~~~ 165 (168)
T cd01887 161 ILLLA 165 (168)
T ss_pred HHHhh
Confidence 97654
No 170
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2e-20 Score=206.36 Aligned_cols=236 Identities=28% Similarity=0.371 Sum_probs=181.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEeC--------------------C------eEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVTN--------------------H------GSI 118 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~~--------------------~------~~i 118 (1527)
...+|.++||++||||||..+|++-- +...-..|+|+.+++.....- + +.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 45689999999999999999998743 333445688888776543210 0 258
Q ss_pred EEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHHHHHHhhhc
Q psy1758 119 TFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQ 196 (1527)
Q Consensus 119 ~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~~~~l~~~~ 196 (1527)
.|+|.||||-....+..++...|+++||++|++. .+|||.|++..+.-.++. +|++-||+|+...+......+.. ..
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qI-k~ 167 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQI-KE 167 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHH-HH
Confidence 8999999999999999999999999999999995 589999999999888886 89999999998743221111111 11
Q ss_pred ccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeec--------CCCceEEEEEeeccE
Q psy1758 197 VIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLD--------KGKGPVATVLIQSGT 268 (1527)
Q Consensus 197 ~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~--------~~~G~v~~~~v~~G~ 268 (1527)
+..-.+..+.|++|+||..+.||+.|+++|... +..+..+.+.|+..+|..++.. +-+|.|..+.+.+|.
T Consensus 168 FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~--IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~ 245 (415)
T COG5257 168 FVKGTVAENAPIIPISAQHKANIDALIEAIEKY--IPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGV 245 (415)
T ss_pred HhcccccCCCceeeehhhhccCHHHHHHHHHHh--CCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeee
Confidence 222234456799999999999999999999643 4556667788999999998764 457899999999999
Q ss_pred EEeccEEEe--c------------ceeeeEeEeeccCCceeeecCCCcceEec
Q psy1758 269 LRCSDIVVA--G------------ASYGRIRSMLNENGKNILEAGPSIPVEIQ 307 (1527)
Q Consensus 269 l~~gd~vv~--g------------~~~~kVr~i~~~~g~~v~~a~~~~~v~I~ 307 (1527)
+++||++.+ | +.+.+|.++ ...+..+++|.||--+.|.
T Consensus 246 l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl-~ag~~~~~ea~PGGLvgvG 297 (415)
T COG5257 246 LRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSL-QAGGEDVEEARPGGLVGVG 297 (415)
T ss_pred EecCCeEEecCCeEeecCCceEEEEeeEEEEEE-EeCCeeeeeccCCceEEEe
Confidence 999999876 2 113577777 4566789999999776663
No 171
>KOG0461|consensus
Probab=99.85 E-value=2.5e-20 Score=206.09 Aligned_cols=236 Identities=26% Similarity=0.330 Sum_probs=188.3
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc-------cccccCCceeEEEEEEEEEeCC---------eEEEEEeCCChhhHHHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN-------VVFSEAGGITQHIGAYNVVTNH---------GSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~-------~~~~~~~giT~~~~~~~~~~~~---------~~i~~iDTPG~e~f~~~ 132 (1527)
..++.++||+++|||||.++|.... ...+...|+|.|.+...+.... -+++|+|+|||......
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 3689999999999999999996532 2455667999999987765432 25799999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHH-HHH---hhhcccccccCCCCcE
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK-QDL---ISEQVIPEEYGGASPF 208 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~-~~l---~~~~~~~~~~~~~~~v 208 (1527)
..-+++..|.+++|+|+..|.++|+.|++-.....-...|||+||+|....+..... +.+ .........++++.|+
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI 166 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPI 166 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCce
Confidence 999999999999999999999999999998877777779999999998764322111 111 1122334456788999
Q ss_pred EEeeccCC----CChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--ee
Q psy1758 209 ISISAKTG----VGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YG 282 (1527)
Q Consensus 209 ~~iSAktg----~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~ 282 (1527)
+++||+.| ++|.+|.+.|... +-.++.+...|+...|...+..+|+|+|.++.+.+|.++.|+.|.+..- .-
T Consensus 167 ~~vsa~~G~~~~~~i~eL~e~l~s~--if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~r 244 (522)
T KOG0461|consen 167 VEVSAADGYFKEEMIQELKEALESR--IFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKR 244 (522)
T ss_pred eEEecCCCccchhHHHHHHHHHHHh--hcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhh
Confidence 99999999 7899988887643 4566778889999999999999999999999999999999999987543 34
Q ss_pred eEeEeeccCCceeeecCCCcceEec
Q psy1758 283 RIRSMLNENGKNILEAGPSIPVEIQ 307 (1527)
Q Consensus 283 kVr~i~~~~g~~v~~a~~~~~v~I~ 307 (1527)
||++|..++. ++.+|.+|+...+.
T Consensus 245 kVKslqmf~~-~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 245 KVKSLQMFKQ-RVTSAAAGDRAGFC 268 (522)
T ss_pred hhhhHHHHhh-hhhhhhcccceeee
Confidence 8999976664 67777777766553
No 172
>KOG0084|consensus
Probab=99.84 E-value=1.6e-20 Score=195.91 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=129.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|.++|+.|||||+|+.+|....+..++..+|.+|+....++.++. ++++|||+|||+|..+...+|+.|+++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 45678999999999999999999999999999999999999999999887 7899999999999999999999999999
Q ss_pred EEEeCCCC----CcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCc-EEEeeccCCCCh
Q psy1758 145 LVVAADDG----VMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASP-FISISAKTGVGI 219 (1527)
Q Consensus 145 lVvda~~g----~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~-v~~iSAktg~gI 219 (1527)
+|||.++. ...+|+..+......++|.++|+||+|+.+.......+. .. .... ...| ++++|||++.||
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a--~~--fa~~--~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEA--QE--FADE--LGIPIFLETSAKDSTNV 160 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHH--HH--HHHh--cCCcceeecccCCccCH
Confidence 99999983 345677666666677899999999999976321111110 00 0111 1235 999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
++.|..|....
T Consensus 161 e~~F~~la~~l 171 (205)
T KOG0084|consen 161 EDAFLTLAKEL 171 (205)
T ss_pred HHHHHHHHHHH
Confidence 99999997543
No 173
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.83 E-value=5e-20 Score=201.37 Aligned_cols=181 Identities=40% Similarity=0.552 Sum_probs=152.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
||+++|.+|+|||||+++|+..............+.++....+..+|+|+......+.+.+..+++|||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999886665555555556788888999999999988888899999999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCC-CChhhhHHHHHHHHhhhccc-------cccc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN-ARPEWVVDATFDLFDKLCAT-------EEQL 1075 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~-a~~~~v~~~~~~~~~~l~~~-------~~~~ 1075 (1527)
.+++.+|++++|+|+.++...+....+..+...++|+++|+||+|+.. .+.....+++.+.+...+.. ....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence 999999999999999999888888888888888999999999999975 44555666666655443321 0123
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..|++++||++|+ |++++++.+.+.+|+|
T Consensus 161 ~~~v~~~Sa~~g~----------gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 161 LVPIVPGSALTGI----------GVEELLEAIVEHLPPP 189 (189)
T ss_pred cceEEEEecccCc----------CHHHHHHHHHhhCCCC
Confidence 5789999999998 9999999999999865
No 174
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.83 E-value=7.4e-20 Score=237.93 Aligned_cols=304 Identities=25% Similarity=0.297 Sum_probs=206.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc---------------cc-ccccCCceeEEEEEEE----EEeCCeEEEEEeCCChh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT---------------NV-VFSEAGGITQHIGAYN----VVTNHGSITFLDTPGHE 127 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~---------------~~-~~~~~~giT~~~~~~~----~~~~~~~i~~iDTPG~e 127 (1527)
+-.+|+++||+|||||||+++|... ++ ......++|++..... +.+.+..++|||||||.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3468999999999999999998642 11 1122256777655433 56677899999999999
Q ss_pred hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH----HHHHhh-------h-
Q psy1758 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI----KQDLIS-------E- 195 (1527)
Q Consensus 128 ~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~----~~~l~~-------~- 195 (1527)
+|...+..+++.+|++++|+|+.+|+..++.+++..+...++|+++|+||+|+..++.... ...+.. .
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKLI 177 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhhh
Confidence 9999999999999999999999999999999999998888999999999999975432211 111100 0
Q ss_pred -cccccccC-------CCCcEEEeeccCC------------CCh----------------------hHHHHHHHHHHHHH
Q psy1758 196 -QVIPEEYG-------GASPFISISAKTG------------VGI----------------------NKLLENISLQAEIL 233 (1527)
Q Consensus 196 -~~~~~~~~-------~~~~v~~iSAktg------------~gI----------------------~eL~~~l~~~~~~~ 233 (1527)
......+. ...+....|++.+ .+. +.|++.|......+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP 257 (720)
T TIGR00490 178 KAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPSP 257 (720)
T ss_pred hccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCCh
Confidence 00000000 0011222333333 122 23344443211000
Q ss_pred -h----------------------hcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEee
Q psy1758 234 -E----------------------LKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSML 288 (1527)
Q Consensus 234 -~----------------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~ 288 (1527)
+ ...+++.|+.+.|++...+++.|.+++++|++|+|++||.|++.+ ...+|+.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~ 337 (720)
T TIGR00490 258 IEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVG 337 (720)
T ss_pred hhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEE
Confidence 0 001224577899999999999999999999999999999997643 356787876
Q ss_pred ccC---CceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccce
Q psy1758 289 NEN---GKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVK 365 (1527)
Q Consensus 289 ~~~---g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1527)
... ..++.++.+|+.+.|.|+++. ..||.+..-.+. + ..+.. ...-..+
T Consensus 338 ~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~-----~------------------~~~~~----~~~~~~P 389 (720)
T TIGR00490 338 VYMGPERVEVDEIPAGNIVAVIGLKDA-VAGETICTTVEN-----I------------------TPFES----IKHISEP 389 (720)
T ss_pred EeccCCccCccEECCCCEEEEECcccc-ccCceeecCCcc-----c------------------ccCcc----cccCCCc
Confidence 544 467899999999999999876 589988522110 0 00000 0011235
Q ss_pred eEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 366 NLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 366 ~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
.+.+-|.+...+....+.++|..+..+...+.+-
T Consensus 390 v~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~ 423 (720)
T TIGR00490 390 VVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVE 423 (720)
T ss_pred eEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 6778899999999999999999997666666663
No 175
>KOG0465|consensus
Probab=99.83 E-value=4.4e-20 Score=218.24 Aligned_cols=300 Identities=23% Similarity=0.250 Sum_probs=223.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+-.+|.++.|.++|||||.+++..-.. ......|||+...+..+.|.+.++++||||||.+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 456799999999999999997643211 12233589999999999999999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcc------------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQV------------ 197 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~------------ 197 (1527)
.....++++..|++|+|+|+..|++.||...|++++..++|.|.++||+|...+++.+..+.+.....
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~ 197 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGS 197 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccccc
Confidence 99999999999999999999999999999999999999999999999999987665444332211000
Q ss_pred ------------------------------cc--------------------------------c---------------
Q psy1758 198 ------------------------------IP--------------------------------E--------------- 200 (1527)
Q Consensus 198 ------------------------------~~--------------------------------~--------------- 200 (1527)
++ +
T Consensus 198 e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~T 277 (721)
T KOG0465|consen 198 ESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRAT 277 (721)
T ss_pred cccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 00 0
Q ss_pred ccCCCCcEEEeeccCCCChhHHHHHHHHHH----HHHh--hc-------------CCCCCCCceEEEEEeecCCCceEEE
Q psy1758 201 EYGGASPFISISAKTGVGINKLLENISLQA----EILE--LK-------------APVTTPAKGVIIESRLDKGKGPVAT 261 (1527)
Q Consensus 201 ~~~~~~~v~~iSAktg~gI~eL~~~l~~~~----~~~~--~~-------------~~~~~p~~~~v~~~~~~~~~G~v~~ 261 (1527)
-.+.++|+++.||..+.||+.|+++++... +..+ .. .+...|+.++.++...++. |.+.+
T Consensus 278 i~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-GqLTy 356 (721)
T KOG0465|consen 278 IKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-GQLTY 356 (721)
T ss_pred hhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc-cceEE
Confidence 002478999999999999999999998542 1100 00 0112288899999998888 99999
Q ss_pred EEeeccEEEeccEEEecceeeeEe-----EeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhh
Q psy1758 262 VLIQSGTLRCSDIVVAGASYGRIR-----SMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQ 336 (1527)
Q Consensus 262 ~~v~~G~l~~gd~vv~g~~~~kVr-----~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~ 336 (1527)
++|++|+|+.||.+++..+.-|+| .|+....+++.++.+|+.+.+.|++. ..||.|..-++
T Consensus 357 vRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGidc--asGDTftd~~~------------ 422 (721)
T KOG0465|consen 357 VRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGIDC--ASGDTFTDKQN------------ 422 (721)
T ss_pred EEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecccc--ccCceeccCcc------------
Confidence 999999999999999876654444 35556668899999999999999954 58997762211
Q ss_pred hchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 337 GKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
....+++++- ...-+.+-||..+--..++...+|..+..+...+++
T Consensus 423 -----------~~~~m~si~v-----PePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv 468 (721)
T KOG0465|consen 423 -----------LALSMESIHI-----PEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRV 468 (721)
T ss_pred -----------ccceeeeeec-----CCCeeEEEecccccccHHHHHHHHHhhcccCCceEE
Confidence 0111222211 113345557777777777777777777665544444
No 176
>KOG2529|consensus
Probab=99.82 E-value=9.9e-21 Score=217.23 Aligned_cols=221 Identities=29% Similarity=0.430 Sum_probs=188.5
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
...|+++++||++.+||++++|++++|...|.||.|||||.+||+|++|++++||++.-++...|+|.+.+. .|+++
T Consensus 66 ~~sgv~~i~kpa~pss~e~~swvk~iL~~ek~Gh~gTlDP~vtg~l~v~~~~~tr~~~s~~s~gk~yvg~~~---lt~~v 142 (395)
T KOG2529|consen 66 SRSGVINIDKPANPSSHEVVSWVKNILRVEKTGHSGTLDPEVTGCLIVCIDRATRLLKSQQSAGKEYVGIGK---LTPEV 142 (395)
T ss_pred hhcCceeccCCCCCchHHHHHHHHHHhhHHHhCCCCCCCccccceEEEEeecccccccchhccCcEEEEEEe---cCcch
Confidence 458999999999999999999999999999999999999999999999999999999999999999965554 46655
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEe--CC
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT--IP 818 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~--~~ 818 (1527)
+.. ..+.+.+....|.-.|.||--+| +.+..|...+|+.++++++ .+
T Consensus 143 ~~~--------------~k~~~~~e~l~g~l~~~~pl~~~-----------------~kr~~~v~~~y~s~~ie~d~~~~ 191 (395)
T KOG2529|consen 143 EDA--------------LKLHQKLEHLYGALFQRPPLISA-----------------VKRVLRVRTLYESKIIEYDRDYP 191 (395)
T ss_pred hhh--------------hhhccchhhhhhhhccCCchhhh-----------------ccceeEeechhhhhcccccccch
Confidence 443 44566777788999999999999 5678888889999999876 46
Q ss_pred eEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCcccccc-ccChhHHHhh------hhhh--hccccCccccc
Q psy1758 819 YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK-CLNIDTIIKY------SEYE--RISSLIPIDIL 889 (1527)
Q Consensus 819 ~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~-a~~l~~l~~~------~~~~--~~~~L~pie~~ 889 (1527)
...|-+.|..|||+|+++..+|..|+++++|.++||.+.|....++ .+++.+..+. .+.+ ......|++..
T Consensus 192 l~~f~~~~~~~t~~rt~~~~lg~ll~~g~k~~E~~r~r~~~~~E~~~~~t~~d~~~~q~~~d~~~d~~~~r~~~~~les~ 271 (395)
T KOG2529|consen 192 LLRFGVSCEAGTYKRTMCVHLGLLLGFGGKMQELRRVRSGICSEEDDMLTEHDEQDAQFEYDTERDESYLRRVKKPLESL 271 (395)
T ss_pred hccccccccccchHHHHHHhhhhHhhhcchhhhhhhcccccccccccccccccchhhhhhhccccCcceeeeeeeccccc
Confidence 7899999999999999999999999999999999999999998877 6887766432 1122 11346888999
Q ss_pred ccccceeeecccccceeccCcccccc
Q psy1758 890 LSSFGIIYLSDLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 890 L~~lP~i~l~d~~~~~i~nG~~i~ls 915 (1527)
+.....+...+......+.|.++...
T Consensus 272 l~~~~~vv~kd~~v~~~cyg~k~~v~ 297 (395)
T KOG2529|consen 272 LTGYKRVVVKDSTVNAPCYGAKLLVP 297 (395)
T ss_pred cccceeeecccchhcCccccceeeec
Confidence 98999998888888899998887654
No 177
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.4e-19 Score=207.29 Aligned_cols=255 Identities=20% Similarity=0.276 Sum_probs=188.7
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHcccc----------------------ccccCCceeEEEEEEEEEeCCeEEEEEeC
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------------VFSEAGGITQHIGAYNVVTNHGSITFLDT 123 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDT 123 (1527)
..|....+|+.||++|||||...|..-.. ......||++..+..+++++++.++++||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 34667899999999999999998742111 11223589999999999999999999999
Q ss_pred CChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc---cc
Q psy1758 124 PGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI---PE 200 (1527)
Q Consensus 124 PG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~---~~ 200 (1527)
|||++|+.-+.|.+..+|.+|.|+|+..|+.+||+.++.-|+..++|++-++||+|....++-+..+++.+...+ +-
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pi 168 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPI 168 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceecc
Confidence 999999999999999999999999999999999999999999999999999999999876554444433211100 00
Q ss_pred c-----------------------------------------------------------------------------cC
Q psy1758 201 E-----------------------------------------------------------------------------YG 203 (1527)
Q Consensus 201 ~-----------------------------------------------------------------------------~~ 203 (1527)
. .|
T Consensus 169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G 248 (528)
T COG4108 169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAG 248 (528)
T ss_pred cccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcC
Confidence 0 02
Q ss_pred CCCcEEEeeccCCCChhHHHHHHHHHHHHHhh-------cCCCCCCCceEEEEEeec---CCCceEEEEEeeccEEEecc
Q psy1758 204 GASPFISISAKTGVGINKLLENISLQAEILEL-------KAPVTTPAKGVIIESRLD---KGKGPVATVLIQSGTLRCSD 273 (1527)
Q Consensus 204 ~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~-------~~~~~~p~~~~v~~~~~~---~~~G~v~~~~v~~G~l~~gd 273 (1527)
...|+|..||.++.||+.+++.++..+..+.. ..+.+..+.|+|++.+.+ +.+-+++..+|-+|....|.
T Consensus 249 ~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGM 328 (528)
T COG4108 249 ELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGM 328 (528)
T ss_pred CccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCc
Confidence 35799999999999999999999866532111 122344688999988753 56899999999999999999
Q ss_pred EEEeccee--eeEeE---eeccCCceeeecCCCcceEecCCCCCCCCCCeEEE
Q psy1758 274 IVVAGASY--GRIRS---MLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFV 321 (1527)
Q Consensus 274 ~vv~g~~~--~kVr~---i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~ 321 (1527)
.+.--.+. .++.. .+......+.+|.||+.+.+..-- .-..||.|..
T Consensus 329 kv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG-~~~IGDT~t~ 380 (528)
T COG4108 329 KVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHG-TIQIGDTFTE 380 (528)
T ss_pred eeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCC-ceeecceeec
Confidence 77542221 22222 223334567788888766553211 2256776653
No 178
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=1.5e-19 Score=212.43 Aligned_cols=225 Identities=23% Similarity=0.331 Sum_probs=167.4
Q ss_pred HHHHHHHHhCCCcc--CccccCCH--HHHHHHHHhcCC-------ceeecCCCCchhhhhhhcc-cCcccccc-cCCCEE
Q psy1758 6 SVVIKNLMKLGQMV--TINQVLDQ--ETAMILVEEMGH-------VAHASKLNDPESFLLNEYN-KNITAESL-VRAPIV 72 (1527)
Q Consensus 6 ~~~i~~l~~~g~~~--~~~~~l~~--~~~~~~a~~~g~-------~~~~~~~~~~~~~~~~~l~-~~~~~~~~-~r~~~V 72 (1527)
.++.++|+..+.++ .+|..-.. +....-.-.+|+ ..|..+..++.+.+...++ +....+.. ..+.+|
T Consensus 102 ~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~iki 181 (444)
T COG1160 102 EEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKI 181 (444)
T ss_pred HHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEE
Confidence 45778888776754 23433222 222222224443 2345566777777777763 22111212 367999
Q ss_pred EEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHH-hhcccc
Q psy1758 73 TIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRA-RGAKVT 140 (1527)
Q Consensus 73 ~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~-~~~~~a 140 (1527)
+|+|.||+|||||+|+|.+.+ ..++..+|+|+|.....+++++.++.|+||+| +|.|...+. .++..|
T Consensus 182 aiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a 261 (444)
T COG1160 182 AIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERA 261 (444)
T ss_pred EEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhc
Confidence 999999999999999998876 68999999999999999999999999999999 566765554 566899
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
|++++|+|+++++..|+......+...+.++|+|+||||+.+.+ .+.....+... -.+-+..|++.+||++|.
T Consensus 262 ~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~----l~~l~~a~i~~iSA~~~~ 337 (444)
T COG1160 262 DVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRK----LPFLDFAPIVFISALTGQ 337 (444)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHH----hccccCCeEEEEEecCCC
Confidence 99999999999999999999999999999999999999997742 22333333321 223456799999999999
Q ss_pred ChhHHHHHHHHHHHHHh
Q psy1758 218 GINKLLENISLQAEILE 234 (1527)
Q Consensus 218 gI~eL~~~l~~~~~~~~ 234 (1527)
|+.+||+.+....+...
T Consensus 338 ~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 338 GLDKLFEAIKEIYECAT 354 (444)
T ss_pred ChHHHHHHHHHHHHHhc
Confidence 99999999986554433
No 179
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=2.7e-19 Score=190.88 Aligned_cols=155 Identities=33% Similarity=0.531 Sum_probs=119.4
Q ss_pred EEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEeC-CeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|+++|++|+|||||+++|.+.. +.....+++|++.....+.+. +..+.+|||||+++|...+..+++.+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68999999999999999998643 333445678888887777776 77999999999999998888889999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCC-CEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGV-PLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+|++++..+++.+.+..+...+. |+++|+||+|+.+... .....++..... .......+++++||++|.|++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~ 159 (164)
T cd04171 82 VAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLA--GTFLADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred EECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHH--hcCcCCCcEEEEeCCCCcCHHHHHH
Confidence 99999887888777766666666 8999999999976321 111222211110 1001246899999999999999999
Q ss_pred HHH
Q psy1758 225 NIS 227 (1527)
Q Consensus 225 ~l~ 227 (1527)
.+.
T Consensus 160 ~l~ 162 (164)
T cd04171 160 YLD 162 (164)
T ss_pred HHh
Confidence 874
No 180
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.82 E-value=2.9e-19 Score=200.83 Aligned_cols=262 Identities=27% Similarity=0.322 Sum_probs=190.3
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHcccccccc--------------CCceeEEEEEEEEEeCC----------------
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSE--------------AGGITQHIGAYNVVTNH---------------- 115 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~--------------~~giT~~~~~~~~~~~~---------------- 115 (1527)
.+....|+.+||+|||||||+..|..+....+. ..|.|.++....+-+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 344567999999999999999888654432221 23566666555443332
Q ss_pred -------eEEEEEeCCChhhHHHHHHhhc--cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-
Q psy1758 116 -------GSITFLDTPGHEAFTAMRARGA--KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL- 185 (1527)
Q Consensus 116 -------~~i~~iDTPG~e~f~~~~~~~~--~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~- 185 (1527)
+-+.|+||-|||.|.....+++ +..|..+||+.|++|++.-|+|++..+...+.|+|++++|+|+.+.+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~ 273 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRF 273 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHH
Confidence 3478999999999999999988 788999999999999999999999999999999999999999976432
Q ss_pred HHHHHHHh----hhcccc---------------cccC-CCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCce
Q psy1758 186 DRIKQDLI----SEQVIP---------------EEYG-GASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKG 245 (1527)
Q Consensus 186 ~~~~~~l~----~~~~~~---------------~~~~-~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~ 245 (1527)
..+.+++. .....+ ...+ +.+|+|.+|+.||.|++-|.+.+..+..- .......|+..
T Consensus 274 ~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~r--r~~~d~g~flm 351 (527)
T COG5258 274 QGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKR--RRWDDEGPFLM 351 (527)
T ss_pred HHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCcc--cccCCCCCeEE
Confidence 12222211 111110 0112 35799999999999999887776533211 02244678999
Q ss_pred EEEEEeecCCCceEEEEEeeccEEEeccEEEecce------eeeEeEeeccCCceeeecCCCcceEe--cCCCCC-CCCC
Q psy1758 246 VIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS------YGRIRSMLNENGKNILEAGPSIPVEI--QGLTKV-PFSG 316 (1527)
Q Consensus 246 ~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~------~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~-~~~G 316 (1527)
+|.+.+...|.|+|+.+.|.+|.|+.||.+++||. ..+|++|. .+...+.+|.+|..+.+ .|..+- -..|
T Consensus 352 YId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIe-mh~~rvdsa~aG~iig~Al~gv~~e~lerG 430 (527)
T COG5258 352 YIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIE-MHHYRVDSAKAGSIIGIALKGVEKEELERG 430 (527)
T ss_pred EEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEE-EeeEEeccccCCcEEEEEecccCHHHHhcc
Confidence 99999999999999999999999999999999975 35899995 45567899999876654 455542 1577
Q ss_pred CeEEEeCChhHHHH
Q psy1758 317 EELFVILNEKKARE 330 (1527)
Q Consensus 317 ~~~~~~~~e~~a~~ 330 (1527)
.++..=...+..++
T Consensus 431 MVl~~~~~pkaVre 444 (527)
T COG5258 431 MVLSAGADPKAVRE 444 (527)
T ss_pred eEecCCCCchhhhe
Confidence 65543224444443
No 181
>KOG0463|consensus
Probab=99.81 E-value=1.5e-19 Score=201.21 Aligned_cols=271 Identities=23% Similarity=0.300 Sum_probs=206.2
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeE-------------------EEEec
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC-------------------SIEYN 983 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~-------------------~~~~~ 983 (1527)
.+||++|.+|+|||||+..|++. .+........+-+-.+..|.|.|-|-...+- +++|-
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHg--eLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHG--ELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred EEEEEEecccCCcceeEeeeeec--ccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 46999999999999999999743 3322211122333456666676666443332 33441
Q ss_pred ------CeEEEEEeCCCCCCchHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-h
Q psy1758 984 ------GTRINIIDTPGHADFGGEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-P 1054 (1527)
Q Consensus 984 ------~~~iniiDTPGh~df~~ev~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~ 1054 (1527)
-..|++||.+||+.|...+.-++ .+.|...|+|-|+.|+...|++++.+|+.+.+|+++|++|||...++ .
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiL 291 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANIL 291 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHH
Confidence 24689999999999988877776 77899999999999999999999999999999999999999998776 3
Q ss_pred hhhHHHHHHHHhhhccccc-------------------ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1055 EWVVDATFDLFDKLCATEE-------------------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1055 ~~v~~~~~~~~~~l~~~~~-------------------~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
++...-+..++..-++... ..-+|+|.+|..+|. ++ +||..+++.++...
T Consensus 292 qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~----------NL-~LLkmFLNlls~R~ 360 (641)
T KOG0463|consen 292 QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGT----------NL-PLLKMFLNLLSLRR 360 (641)
T ss_pred HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCC----------Ch-HHHHHHHhhcCccc
Confidence 4445555555443222211 123789999999997 65 78888888887543
Q ss_pred -CCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE-
Q psy1758 1116 -DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL- 1193 (1527)
Q Consensus 1116 -~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva- 1193 (1527)
...+.|..++|.++++.|++|.++.|...+|+|+.+|.+.+.|...|......|++|. .+|-++..+..|+...
T Consensus 361 ~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~VrcGQtASF 436 (641)
T KOG0463|consen 361 QLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVRCGQTASF 436 (641)
T ss_pred ccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEeccchhhh
Confidence 4677899999999999999999999999999999999999987755655556677663 5678999999999874
Q ss_pred -Eecce--ecccCCeeeCCC
Q psy1758 1194 -ITGIE--EICIGSTICDPS 1210 (1527)
Q Consensus 1194 -i~gl~--~~~iGdTi~~~~ 1210 (1527)
+.+++ +++.|.++.++.
T Consensus 437 ALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 437 ALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred HhhhcchhhhhcceEEecCC
Confidence 44554 677899988764
No 182
>KOG0094|consensus
Probab=99.81 E-value=3.5e-19 Score=184.72 Aligned_cols=158 Identities=21% Similarity=0.253 Sum_probs=125.3
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
..+..+|+++|+.+||||||+.++..+.|...+.++|.+|+....+.+.++ ++++|||+|||+|..+...|++.+.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 345589999999999999999999999999999999999999999888876 788999999999999999999999999
Q ss_pred EEEEeCCCC-CcHHHHHHHHHHHH---c-CCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 144 VLVVAADDG-VMPQTREAIAHAKI---S-GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 144 IlVvda~~g-~~~qt~e~i~~~~~---~-~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|||.++. ...++..++..+.. . ++-+++|+||.||.+...-...+ ......+++ +.|+++||+.|.|
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eE----g~~kAkel~--a~f~etsak~g~N 172 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEE----GERKAKELN--AEFIETSAKAGEN 172 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHH----HHHHHHHhC--cEEEEecccCCCC
Confidence 999999983 34445555554443 3 24588999999998732111111 111122232 4799999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|.+||..|...
T Consensus 173 Vk~lFrrIaa~ 183 (221)
T KOG0094|consen 173 VKQLFRRIAAA 183 (221)
T ss_pred HHHHHHHHHHh
Confidence 99999998643
No 183
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=4.6e-19 Score=194.94 Aligned_cols=151 Identities=32% Similarity=0.397 Sum_probs=118.6
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR 133 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~ 133 (1527)
.+|+++||+|||||||+++|+.... ......|+|++.....+++++.+++|+|||||.+|...+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHH
Confidence 5799999999999999999975310 122357999999988888888999999999999999999
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.+++..+|++++|+|+.+++.+++.+++..+...++| +|+|+||+|+..... +....++.............+|+++
T Consensus 83 ~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iip 162 (195)
T cd01884 83 ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVR 162 (195)
T ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEE
Confidence 9999999999999999999999999999999999998 789999999964211 1122222221111000123579999
Q ss_pred eeccCCCChh
Q psy1758 211 ISAKTGVGIN 220 (1527)
Q Consensus 211 iSAktg~gI~ 220 (1527)
+||++|.|+.
T Consensus 163 iSa~~g~n~~ 172 (195)
T cd01884 163 GSALKALEGD 172 (195)
T ss_pred eeCccccCCC
Confidence 9999999864
No 184
>KOG0458|consensus
Probab=99.80 E-value=1.4e-18 Score=206.73 Aligned_cols=251 Identities=24% Similarity=0.285 Sum_probs=188.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc----------------------c---------ccccCCceeEEEEEEEEEeCCeE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN----------------------V---------VFSEAGGITQHIGAYNVVTNHGS 117 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~----------------------~---------~~~~~~giT~~~~~~~~~~~~~~ 117 (1527)
....+++||+++|||||+.+|...- | ......|+|.++....++...+.
T Consensus 177 ~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~ 256 (603)
T KOG0458|consen 177 HLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKI 256 (603)
T ss_pred ceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCcee
Confidence 4578999999999999998874321 1 12234599999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-------cHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHHH
Q psy1758 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-------MPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIK 189 (1527)
Q Consensus 118 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-------~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~~ 189 (1527)
++++|+|||.+|...+..++..||+++||+|++.+. ..||+|+...++.+|+. +||++||+|+.+++.+++.
T Consensus 257 ~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~ 336 (603)
T KOG0458|consen 257 VTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFE 336 (603)
T ss_pred EEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHH
Confidence 999999999999999999999999999999999743 46999999999999987 9999999999998877765
Q ss_pred HHHhhhcccc-cc--cC-CCCcEEEeeccCCCChhHH------HHHHH---HHHH---HHhhcCCCCCCCceEEEEEeec
Q psy1758 190 QDLISEQVIP-EE--YG-GASPFISISAKTGVGINKL------LENIS---LQAE---ILELKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 190 ~~l~~~~~~~-~~--~~-~~~~v~~iSAktg~gI~eL------~~~l~---~~~~---~~~~~~~~~~p~~~~v~~~~~~ 253 (1527)
........+. +. |. ..+.|+|||+.+|+|+... .+|-- .+.. ......+...|++..|.+.+..
T Consensus 337 eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~ 416 (603)
T KOG0458|consen 337 EIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPL 416 (603)
T ss_pred HHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeec
Confidence 4332222221 11 21 3468999999999998643 33221 1111 1122334566999999999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEeccee--eeEeEeeccCCceeeecCCCcceEe--cCCC-CCCCCCCeEE
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGASY--GRIRSMLNENGKNILEAGPSIPVEI--QGLT-KVPFSGEELF 320 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~~~--~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~-~~~~~G~~~~ 320 (1527)
++.|..++|+|.+|.|..||.|++++.+ +.|+.+... ..+...|-+|+-|.+ .|+. ..-..|+++.
T Consensus 417 ~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~-~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 417 PSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN-DEPKTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred CCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC-CCcceeEeeCCEEEEecCccChhhcccceeee
Confidence 9999999999999999999999997764 799999665 345555555655544 4422 2225677554
No 185
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.79 E-value=1.5e-18 Score=188.59 Aligned_cols=153 Identities=31% Similarity=0.401 Sum_probs=115.5
Q ss_pred EEEEEecCCCChhHHHHHHHccccc---------------cccCCceeEEEEEEEEEe-----CCeEEEEEeCCChhhHH
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVV---------------FSEAGGITQHIGAYNVVT-----NHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~---------------~~~~~giT~~~~~~~~~~-----~~~~i~~iDTPG~e~f~ 130 (1527)
+|+++|++|||||||+++|.+.... .....|+|.+.....+.+ .+..++|||||||++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6999999999999999999874211 111235666555444433 34578899999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEE
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.++.++++.+|++|+|+|++++...++.+.+..+...++|+++|+||+|+.+.........+..... . ...++++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~----~-~~~~~~~ 156 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLG----L-DPSEAIL 156 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhC----C-CcccEEE
Confidence 9999999999999999999998888888877777778899999999999865433322233322111 1 1135899
Q ss_pred eeccCCCChhHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISL 228 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~ 228 (1527)
+||++|.|+++|++.|..
T Consensus 157 ~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 157 VSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred eeccCCCCHHHHHHHHHh
Confidence 999999999999999964
No 186
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.79 E-value=1.2e-18 Score=191.95 Aligned_cols=160 Identities=31% Similarity=0.430 Sum_probs=121.4
Q ss_pred CEEEEEecCCCChhHHHHHHHcc-------ccccccCCceeEEEEEEEEEeC--------------CeEEEEEeCCChhh
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKT-------NVVFSEAGGITQHIGAYNVVTN--------------HGSITFLDTPGHEA 128 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~-------~~~~~~~~giT~~~~~~~~~~~--------------~~~i~~iDTPG~e~ 128 (1527)
.+|+++||+|||||||+++|... .......+|+|++.....+.+. +..++|||||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 36999999999999999999872 2234456688988887766665 56899999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhc--ccccccCCC
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQ--VIPEEYGGA 205 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~--~~~~~~~~~ 205 (1527)
|......+++.+|++++|+|++++...++.+.+..+...+.|+++++||+|+.... ......++.... .........
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN 160 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 88888788889999999999999888888777776666789999999999997432 222222222110 000000124
Q ss_pred CcEEEeeccCCCChhHHHHHHHHH
Q psy1758 206 SPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 206 ~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
++++++||++|.|+++|++.|..+
T Consensus 161 ~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 161 SPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred CCEEEEeccCCCCHHHHHHHHHhc
Confidence 689999999999999999999754
No 187
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.79 E-value=1e-17 Score=221.03 Aligned_cols=303 Identities=18% Similarity=0.198 Sum_probs=198.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeC----------------C
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTN----------------H 115 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~----------------~ 115 (1527)
+-.+|+|+||+|||||||+++|..... ......|+|.+.....+.|. +
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 345799999999999999999865431 11223477877766666653 5
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC-------c----ch
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL-------D----IN 184 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~-------~----~~ 184 (1527)
..++|+|||||.+|...+.++++.+|++|+|+|+.+|+..||..+|+++...++|+|+++||+|+. . ++
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~~~ 177 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999998 2 34
Q ss_pred hHHHHHHHh--------hhccc--ccccCCCCcEEEeeccCC--------------------------------------
Q psy1758 185 LDRIKQDLI--------SEQVI--PEEYGGASPFISISAKTG-------------------------------------- 216 (1527)
Q Consensus 185 ~~~~~~~l~--------~~~~~--~~~~~~~~~v~~iSAktg-------------------------------------- 216 (1527)
..++..++. ..... ....++ .++..|+..|
T Consensus 178 ~~~vi~~in~~~~~~~~~~~~~~~~~P~~~--nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~ 255 (843)
T PLN00116 178 FSRVIENANVIMATYEDPLLGDVQVYPEKG--TVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (843)
T ss_pred HHHHHHHHHHHHHhccccccCceEEccCCC--eeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCc
Confidence 444444443 10000 000000 1111122111
Q ss_pred --------C-------------ChhHHHHHHHH--------HHHH-----------------------------------
Q psy1758 217 --------V-------------GINKLLENISL--------QAEI----------------------------------- 232 (1527)
Q Consensus 217 --------~-------------gI~eL~~~l~~--------~~~~----------------------------------- 232 (1527)
. -+.+|++.++. ..+.
T Consensus 256 ~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~ 335 (843)
T PLN00116 256 KWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEM 335 (843)
T ss_pred eEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHH
Confidence 0 00011111110 0000
Q ss_pred --HhhcC----------------------------CCCCCCceEEEEEeecCCCce-EEEEEeeccEEEeccEEEe-cce
Q psy1758 233 --LELKA----------------------------PVTTPAKGVIIESRLDKGKGP-VATVLIQSGTLRCSDIVVA-GAS 280 (1527)
Q Consensus 233 --~~~~~----------------------------~~~~p~~~~v~~~~~~~~~G~-v~~~~v~~G~l~~gd~vv~-g~~ 280 (1527)
...+. +++.|..++|++...++..|. +++++|++|+|+.||.|++ |+.
T Consensus 336 i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n 415 (843)
T PLN00116 336 IIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPN 415 (843)
T ss_pred HHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCC
Confidence 00001 112467788999988887787 9999999999999999962 321
Q ss_pred -----e-----eeE---eEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHH
Q psy1758 281 -----Y-----GRI---RSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQ 347 (1527)
Q Consensus 281 -----~-----~kV---r~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~ 347 (1527)
. ++| ..+......++.++.+|+.+.|.|++.....|+.+....+. ..
T Consensus 416 ~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~-~~------------------- 475 (843)
T PLN00116 416 YVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEV-DA------------------- 475 (843)
T ss_pred CCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCccc-CC-------------------
Confidence 1 244 44444445778999999999999998764558877421100 00
Q ss_pred hhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 348 KLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
..+.. +.-.....+.+-|.+...+..+.+.++|..+..+...+.+
T Consensus 476 --~~l~~----~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v 520 (843)
T PLN00116 476 --HPIKA----MKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQC 520 (843)
T ss_pred --ccccc----cccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEE
Confidence 00000 0000134577889999999999999999999766655654
No 188
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.79 E-value=9.5e-19 Score=186.72 Aligned_cols=158 Identities=34% Similarity=0.391 Sum_probs=125.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-CeEEEEEeCCCCCCchHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~iniiDTPGh~df~~ev 1002 (1527)
+|+++|++|+|||||+++|+... .+....+..+|+|+......+.+. ++.+++|||||+.+|...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~-------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE-------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc-------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHH
Confidence 79999999999999999997531 122334566789998888888887 8899999999999999988
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCC-ccEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF-KPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~gl-p~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
..+++.+|++++|+|+++++.+++...+..+...+. |+++|+||+|+.+.. .....+++.+.+.... ...+|++
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 144 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF----LADAPIF 144 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC----cCCCcEE
Confidence 999999999999999999998999888877777776 889999999997542 2233444444443211 1246899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHH
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAIL 1108 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~ 1108 (1527)
++||++|. |++++++.+.
T Consensus 145 ~~Sa~~~~----------~v~~l~~~l~ 162 (164)
T cd04171 145 PVSAVTGE----------GIEELKEYLD 162 (164)
T ss_pred EEeCCCCc----------CHHHHHHHHh
Confidence 99999998 9999998874
No 189
>KOG0092|consensus
Probab=99.79 E-value=3.2e-19 Score=185.71 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=120.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|..+||||||+-++..+.|.....++|...+....+..++. ++.+|||+|+|+|.++...|++.|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35679999999999999999999999998888888888887777777774 6779999999999999999999999999
Q ss_pred EEEeCCCCCc-HHHHHHHHHHHHcCCC---EEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 145 LVVAADDGVM-PQTREAIAHAKISGVP---LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 145 lVvda~~g~~-~qt~e~i~~~~~~~vp---iIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|||+++.-. .+...++..+....-| +.+|+||+|+.+.......+. ....+ .....||++|||||.||+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea----~~yAe--~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEA----QAYAE--SQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHH----HHHHH--hcCCEEEEEecccccCHH
Confidence 9999998443 2334444555443334 667999999976211111110 00011 123589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|..|...
T Consensus 157 ~if~~Ia~~ 165 (200)
T KOG0092|consen 157 EIFQAIAEK 165 (200)
T ss_pred HHHHHHHHh
Confidence 999999754
No 190
>KOG0394|consensus
Probab=99.79 E-value=5.2e-19 Score=181.66 Aligned_cols=160 Identities=22% Similarity=0.259 Sum_probs=124.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|.++|++|||||||++++.+..|...+..+|..++....+..+++ .+++|||+|||+|.++....++.||++++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 4578999999999999999999999999899999999998888888876 57789999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHH-----HHHHH---cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 146 VVAADDGVMPQTREAI-----AHAKI---SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i-----~~~~~---~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
|+|+++.-.-...+.| .++.. ..-|+||++||+|+.......+... ....+... .+++|+|++|||.+.
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~--~Aq~WC~s-~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEK--KAQTWCKS-KGNIPYFETSAKEAT 164 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHH--HHHHHHHh-cCCceeEEecccccc
Confidence 9999984333333333 33321 2468999999999966321111111 11112222 357899999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
||++.|+.+...+
T Consensus 165 NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 165 NVDEAFEEIARRA 177 (210)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998665
No 191
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.79 E-value=2.2e-18 Score=190.81 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=116.2
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
.|+++|..|+|||||+.++....+...+.++++.++....+..++. .+.||||||+++|..++..+++.+|++|+|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 5899999999999999999999988777778887877767777764 67899999999999999999999999999999
Q ss_pred CCCCCcHHH----HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 149 ADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 149 a~~g~~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+++....+. .+.+......++|+++|+||+|+..... +....... ..... ...+++++||++|.||+++|+
T Consensus 82 vtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~--v~~~~~~~--~a~~~-~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 82 ITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE--ISRQQGEK--FAQQI-TGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc--cCHHHHHH--HHHhc-CCCEEEEecCCCCCCHHHHHH
Confidence 999543333 3333322234689999999999864211 11111000 01111 125799999999999999999
Q ss_pred HHHHH
Q psy1758 225 NISLQ 229 (1527)
Q Consensus 225 ~l~~~ 229 (1527)
+++..
T Consensus 157 ~l~~~ 161 (202)
T cd04120 157 KLVDD 161 (202)
T ss_pred HHHHH
Confidence 99854
No 192
>KOG0078|consensus
Probab=99.78 E-value=2.3e-18 Score=183.04 Aligned_cols=155 Identities=19% Similarity=0.160 Sum_probs=127.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|+++||||+|+.++....|..+...++.+|+....+..++. ++++|||+|||+|..+...|++.|++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 45678999999999999999999999999999999999999999998887 6789999999999999999999999999
Q ss_pred EEEeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
||||.++... ..|++.+......++|+++|+||+|+..... .+.-+.+ ..++ .++|+++|||+|.|
T Consensus 90 LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l------A~e~--G~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL------AREY--GIKFFETSAKTNFN 161 (207)
T ss_pred EEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH------HHHh--CCeEEEccccCCCC
Confidence 9999998432 3366666666667899999999999976211 1111112 2223 36899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|++.|-.|+..
T Consensus 162 I~eaF~~La~~ 172 (207)
T KOG0078|consen 162 IEEAFLSLARD 172 (207)
T ss_pred HHHHHHHHHHH
Confidence 99999999743
No 193
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.78 E-value=3e-18 Score=189.19 Aligned_cols=156 Identities=32% Similarity=0.390 Sum_probs=119.3
Q ss_pred CEEEEEecCCCChhHHHHHHHc--cccccc--------------cCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRK--TNVVFS--------------EAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR 133 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~--~~~~~~--------------~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~ 133 (1527)
.+|+++|++|+|||||+++|.. ..+... ...|+|.+.....+.+++..++|||||||++|..++
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999986 333222 225777777777788888899999999999999999
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhc-cccccc-CCCCcEEEe
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQ-VIPEEY-GGASPFISI 211 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~-~~~~~~-~~~~~v~~i 211 (1527)
..+++.+|++++|+|++++..+++..++..+...++|+++|+||+|+..........++.... .....+ ...++++++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 162 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYA 162 (194)
T ss_pred HHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEe
Confidence 999999999999999999888888777777777899999999999997644433333322211 000011 124689999
Q ss_pred eccCCCChhHHHHH
Q psy1758 212 SAKTGVGINKLLEN 225 (1527)
Q Consensus 212 SAktg~gI~eL~~~ 225 (1527)
||++|.|+.++-+.
T Consensus 163 Sa~~g~~~~~~~~~ 176 (194)
T cd01891 163 SAKNGWASLNLEDP 176 (194)
T ss_pred ehhccccccccccc
Confidence 99999988665433
No 194
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=1.3e-18 Score=182.08 Aligned_cols=147 Identities=21% Similarity=0.322 Sum_probs=112.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh------HHHHHHhhc--cccC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA------FTAMRARGA--KVTD 141 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~------f~~~~~~~~--~~aD 141 (1527)
++|+++|.||+|||||+|+|++.....+..||+|.+.....+.+.+..+.|+||||... -......++ ...|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 47999999999999999999999999999999999999999999999999999999311 122233333 6799
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH-HHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 142 IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI-KQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~-~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
++++|+|++. ..+......++...++|+++|+||+|+.......+ ...+.+ .+ .+|++++||++|.|++
T Consensus 81 ~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~------~L--g~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 81 LIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSE------RL--GVPVIPVSARTGEGID 150 (156)
T ss_dssp EEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHH------HH--TS-EEEEBTTTTBTHH
T ss_pred EEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHH------Hh--CCCEEEEEeCCCcCHH
Confidence 9999999997 56667777888899999999999999864321111 111111 11 2699999999999999
Q ss_pred HHHHHH
Q psy1758 221 KLLENI 226 (1527)
Q Consensus 221 eL~~~l 226 (1527)
+|++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
No 195
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.77 E-value=2.3e-18 Score=192.09 Aligned_cols=151 Identities=30% Similarity=0.445 Sum_probs=116.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccc-c------------------------------ccCCceeEEEEEEEEEeCCeEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVV-F------------------------------SEAGGITQHIGAYNVVTNHGSIT 119 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~-~------------------------------~~~~giT~~~~~~~~~~~~~~i~ 119 (1527)
+|+++||+|+|||||+++|...... . ...+|+|++.....+.+++.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4899999999999999998653321 1 11268999999999999999999
Q ss_pred EEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHH---HHHHHhhh
Q psy1758 120 FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDR---IKQDLISE 195 (1527)
Q Consensus 120 ~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~---~~~~l~~~ 195 (1527)
|||||||++|...+..+++.+|++++|+|++++...++.+.+..+...+.| +|+|+||+|+...+... ...++..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~- 159 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLA- 159 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHH-
Confidence 999999999998888889999999999999999988888888877777765 78899999997533221 1222211
Q ss_pred cccccccC-CCCcEEEeeccCCCChhHHHH
Q psy1758 196 QVIPEEYG-GASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 196 ~~~~~~~~-~~~~v~~iSAktg~gI~eL~~ 224 (1527)
....++ ...+++++||++|.|+++...
T Consensus 160 --~~~~~~~~~~~ii~iSA~~g~ni~~~~~ 187 (208)
T cd04166 160 --FAAKLGIEDITFIPISALDGDNVVSRSE 187 (208)
T ss_pred --HHHHcCCCCceEEEEeCCCCCCCccCCC
Confidence 111122 235799999999999986543
No 196
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=7.2e-18 Score=210.39 Aligned_cols=161 Identities=23% Similarity=0.358 Sum_probs=129.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHH-
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRA- 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~- 134 (1527)
...++|+++|++|+|||||+++|.+... ..++.+|+|++.....+.+++..+.|||||| ++.|..++.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 4578999999999999999999998874 5678899999988888888999999999999 466666654
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeec
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
.+++.+|++++|+|++++...+....+..+...++|+|+|+||+|+.+.+... ....+.. ... ....+|++++||
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~-~l~---~~~~~~~~~~SA 364 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDR-ELA---QVPWAPRVNISA 364 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHH-hcc---cCCCCCEEEEEC
Confidence 45789999999999999999999888888888899999999999997532211 1111111 111 112368999999
Q ss_pred cCCCChhHHHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQAE 231 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~~~ 231 (1527)
++|.|++++|+.+....+
T Consensus 365 k~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 365 KTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999986554
No 197
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.77 E-value=1.2e-17 Score=178.66 Aligned_cols=151 Identities=20% Similarity=0.229 Sum_probs=111.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++....+.....+.+..++....+..++. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 47999999999999999999988876665555555544444444544 6889999999999999999999999999999
Q ss_pred eCCCCCcHHHHH-HHHHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 148 AADDGVMPQTRE-AIAHAKI--SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 148 da~~g~~~qt~e-~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
|+++....+..+ ++..+.. .+.|+++|+||+|+......+ ...+ ...+ .++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~------~~~~--~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQK-KFNF------AEKH--NLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHH-HHHH------HHHc--CCeEEEEeCCCCCCHHHHHH
Confidence 999855433332 2333333 378999999999985321111 1111 1111 25899999999999999999
Q ss_pred HHHHH
Q psy1758 225 NISLQ 229 (1527)
Q Consensus 225 ~l~~~ 229 (1527)
.+...
T Consensus 152 ~l~~~ 156 (161)
T cd04124 152 DAIKL 156 (161)
T ss_pred HHHHH
Confidence 99754
No 198
>KOG0098|consensus
Probab=99.77 E-value=1.5e-18 Score=178.58 Aligned_cols=155 Identities=18% Similarity=0.161 Sum_probs=124.7
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..++.++|+.|||||+|+.+++...|..-...++.++++...+..+++ ++++|||+|||.|.+.+..+++.|.+++||
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV 85 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV 85 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence 368999999999999999999999998888889999999999888887 788999999999999999999999999999
Q ss_pred EeCCCCC----cHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 147 VAADDGV----MPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 147 vda~~g~----~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
||.+... ..+|.+-+++....|..+++++||+||..-. .+..+. -..+.++. ...++++||+++.||++.
T Consensus 86 ydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR--~Vs~EE--GeaFA~eh--gLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 86 YDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR--EVSKEE--GEAFAREH--GLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc--cccHHH--HHHHHHHc--CceeehhhhhhhhhHHHH
Confidence 9999843 4556666666556678899999999996521 111111 11122222 247889999999999999
Q ss_pred HHHHHHH
Q psy1758 223 LENISLQ 229 (1527)
Q Consensus 223 ~~~l~~~ 229 (1527)
|......
T Consensus 160 F~nta~~ 166 (216)
T KOG0098|consen 160 FINTAKE 166 (216)
T ss_pred HHHHHHH
Confidence 9988643
No 199
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=9.5e-18 Score=179.94 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=114.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||++++....+.....++++.+.....+.+++. .+.||||||++.|..++...++.+|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999988776655566656666666666664 789999999999999999999999999999
Q ss_pred EeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++.... +|...+......++|+++|+||+|+....... ....+.. . .+..+++++||++|.|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~-~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAE------K-NGMLAVLETSAKESQNVE 155 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH------H-cCCcEEEEEECCCCCCHH
Confidence 999985432 23333333334578999999999997532111 1111111 1 122468999999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
++++.+..
T Consensus 156 ~~~~~l~~ 163 (165)
T cd01864 156 EAFLLMAT 163 (165)
T ss_pred HHHHHHHH
Confidence 99999864
No 200
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.76 E-value=1.1e-18 Score=163.36 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=74.7
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhc-ChHHHHccccceeEEEEeEecceeec
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLI-GFQNEFITLTRGTGLISHVFEEYAPF 1394 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~-g~~~~l~s~T~G~g~~~~~f~~Y~~~ 1394 (1527)
|||++++|.||++|+|+||++|++|||++++|+..++++++|+|.+|+|+++ ||+++|+++|+|+|+|+++|+||+|.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 8999999999999999999999999999999998655689999999999995 99999999999999999999999985
No 201
>PTZ00416 elongation factor 2; Provisional
Probab=99.76 E-value=5.6e-17 Score=213.51 Aligned_cols=114 Identities=27% Similarity=0.384 Sum_probs=97.7
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeC----------CeEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTN----------HGSITFL 121 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~----------~~~i~~i 121 (1527)
+-.+|+++||+|||||||+++|..... ......|+|++.....+.|. +..++|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 344899999999999999999975321 11223477887766666665 5679999
Q ss_pred eCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC
Q psy1758 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181 (1527)
Q Consensus 122 DTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~ 181 (1527)
|||||.+|......+++.+|++|+|+|+.+|+..|+..+|+.+...++|+|+++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 999999999999999999999999999999999999999999999999999999999997
No 202
>COG1159 Era GTPase [General function prediction only]
Probab=99.76 E-value=6.5e-18 Score=188.93 Aligned_cols=158 Identities=28% Similarity=0.385 Sum_probs=128.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC-h-------hhHHHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG-H-------EAFTAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG-~-------e~f~~~~~~~~ 137 (1527)
.+...|+|+|.||+|||||+|+|.+... .++..+.+|++.....++.++.++.|+|||| | +........++
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 4667899999999999999999999986 8899999999999999999999999999999 2 23344455678
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
..+|++++|+|++++..+.....+..++..+.|+++++||+|+...... ...+.... .....+..++++||++|.
T Consensus 84 ~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~--l~~~~~~~---~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV--LLKLIAFL---KKLLPFKEIVPISALKGD 158 (298)
T ss_pred ccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH--HHHHHHHH---HhhCCcceEEEeeccccC
Confidence 9999999999999988888888888888877899999999998774431 11111111 112233489999999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
|++.|.+.+...
T Consensus 159 n~~~L~~~i~~~ 170 (298)
T COG1159 159 NVDTLLEIIKEY 170 (298)
T ss_pred CHHHHHHHHHHh
Confidence 999999999643
No 203
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.76 E-value=1.1e-17 Score=179.75 Aligned_cols=152 Identities=17% Similarity=0.157 Sum_probs=112.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+.....+++..++....+..++. ++.+|||||++.|..++..+++.+|++|+|+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 57999999999999999999998887666666555655555555554 6789999999999999999999999999999
Q ss_pred eCCCCCcHHHHHH----HHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~e~----i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+.... +......+.|+++|+||+|+...... +....+. ..+ ..+++++||++|.|+++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA------DEN--GLLFLECSAKTGENVED 154 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH------HHc--CCEEEEEECCCCCCHHH
Confidence 9998443322222 22222346789999999999653211 1111111 111 25899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.++..
T Consensus 155 ~f~~l~~~ 162 (166)
T cd04122 155 AFLETAKK 162 (166)
T ss_pred HHHHHHHH
Confidence 99998743
No 204
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.76 E-value=1.1e-17 Score=186.03 Aligned_cols=157 Identities=30% Similarity=0.376 Sum_probs=115.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEeC---------------------------C----
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVTN---------------------------H---- 115 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~~---------------------------~---- 115 (1527)
.+|+++||+|||||||+.+|.... .......++|.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 369999999999999999997652 123333466666665554442 3
Q ss_pred --eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-CcHHHHHHHHHHHHcCC-CEEEEEEcccCCcch-hHHHHH
Q psy1758 116 --GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-VMPQTREAIAHAKISGV-PLIVAINKIDKLDIN-LDRIKQ 190 (1527)
Q Consensus 116 --~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~-~~~~~~ 190 (1527)
..++|||||||++|...+..++..+|++++|+|++++ ...++.+.+..+...+. |+++|+||+|+.+.. ......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHH
Confidence 6799999999999999999999999999999999984 66788888877766666 689999999997532 111222
Q ss_pred HHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 191 DLISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 191 ~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
.+.... .......++++++||++|.|+++|++.|..
T Consensus 161 ~i~~~~--~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 161 QIKKFV--KGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHHHH--hccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 221110 000112468999999999999999999964
No 205
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.76 E-value=5.2e-18 Score=190.82 Aligned_cols=151 Identities=32% Similarity=0.395 Sum_probs=114.4
Q ss_pred EEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCeEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHGSIT 119 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~~i~ 119 (1527)
+|+++||+|||||||+++|..... ......|+|++.....+.+++.+++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999998843210 1122469999999999999999999
Q ss_pred EEeCCChhhHHHHHHhhccccCEEEEEEeCCC-------CCcHHHHHHHHHHHHcC-CCEEEEEEcccCCcc--h---hH
Q psy1758 120 FLDTPGHEAFTAMRARGAKVTDIVVLVVAADD-------GVMPQTREAIAHAKISG-VPLIVAINKIDKLDI--N---LD 186 (1527)
Q Consensus 120 ~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~-------g~~~qt~e~i~~~~~~~-vpiIvviNKiDl~~~--~---~~ 186 (1527)
|||||||.+|...+..+++.+|++|+|+|+++ +...++.+++..+...+ .|+++|+||+|+... + ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 45678888887777777 578999999999732 1 22
Q ss_pred HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+....+.............++++++||++|.|+++
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 23332221110000011247899999999999973
No 206
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.76 E-value=1.2e-17 Score=179.63 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=115.1
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||++++.+..+...+.++++.+.....+..++. .+.+|||||++.|..++...++.+|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 478999999999999999999999887777777766665555666664 688999999999999999999999999999
Q ss_pred EeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++.... +|...+......+.|+++|+||+|+.+.... +....+.. .+ .++++++||++|.|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~v~ 154 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALAD------EY--GIKFLETSAKANINVE 154 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHH------Hc--CCEEEEEeCCCCCCHH
Confidence 999884432 2222222222346899999999999753211 11111111 11 2589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.+...
T Consensus 155 ~~~~~i~~~ 163 (167)
T cd01867 155 EAFFTLAKD 163 (167)
T ss_pred HHHHHHHHH
Confidence 999999754
No 207
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.76 E-value=2.6e-17 Score=180.46 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=115.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|..++|||||+.+|....+...+.++++.+.....+..++. .+.||||||++.|..++..+++.+|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 4478999999999999999999998876666666777776666666664 68899999999999999999999999999
Q ss_pred EEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++.... .|.+.+... ..++|+|||+||+|+..... .+..+.+. ... .++++++||++|.||
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a------~~~--~~~~~e~SAk~g~~V 155 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYA------ERN--GMTFFEVSPLCNFNI 155 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHH------HHc--CCEEEEecCCCCCCH
Confidence 9999984432 233333221 24789999999999964211 11111111 111 258999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|+.+....
T Consensus 156 ~~~F~~l~~~i 166 (189)
T cd04121 156 TESFTELARIV 166 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999998543
No 208
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.76 E-value=1.9e-17 Score=177.84 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=111.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+++|.+..+.....++++.++....+..++ ..+.+|||||+++|..++..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 4799999999999999999999988666666666555444444444 37889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.... +|.+.+......+.|+++|+||+|+.+.... +....+.. .+ ..+++++||++|.|+++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLAD------QL--GFEFFEASAKENINVKQ 153 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHH------Hc--CCEEEEEECCCCCCHHH
Confidence 99874322 2222222222246789999999999653221 11111111 11 24799999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.+...
T Consensus 154 l~~~l~~~ 161 (165)
T cd01865 154 VFERLVDI 161 (165)
T ss_pred HHHHHHHH
Confidence 99999754
No 209
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.76 E-value=1.3e-17 Score=189.08 Aligned_cols=159 Identities=30% Similarity=0.404 Sum_probs=128.8
Q ss_pred EEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
+|+++||+|+|||||+++|...... .....++|.+.....+.+++.+++|||||||.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999753211 1223577888888899999999999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc--------------
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI-------------- 198 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~-------------- 198 (1527)
+.++++.+|++++|+|+.++...++.+++..+...++|+++++||+|+..++..+...++......
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 160 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNI 160 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeee
Confidence 999999999999999999999999999999998899999999999999876655544433221000
Q ss_pred -------------------------------c-c----------ccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 199 -------------------------------P-E----------EYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 199 -------------------------------~-~----------~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
. + ..+..+|+++.||.++.|+..|++.+...
T Consensus 161 ~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~ 233 (237)
T cd04168 161 CETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKL 233 (237)
T ss_pred eeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHh
Confidence 0 0 00346799999999999999999999754
No 210
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.75 E-value=9.7e-18 Score=183.15 Aligned_cols=158 Identities=12% Similarity=0.131 Sum_probs=112.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|+.++|||||+.+|....+...+.+++..++....+..++. .+.+|||+|++.|..++..+++.+|++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 37999999999999999999999887777777776766556666664 6789999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHh-hhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLI-SEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~-~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|+++.... +|.+.+........| |+|+||+|+............. ........++ ++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK--APLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC--CEEEEEeCCCCCCHHHH
Confidence 99984332 233322222223455 6889999996321100000000 1111112222 58999999999999999
Q ss_pred HHHHHHHH
Q psy1758 223 LENISLQA 230 (1527)
Q Consensus 223 ~~~l~~~~ 230 (1527)
|+++....
T Consensus 158 f~~l~~~l 165 (182)
T cd04128 158 FKIVLAKA 165 (182)
T ss_pred HHHHHHHH
Confidence 99997543
No 211
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.75 E-value=1.5e-17 Score=178.55 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=114.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++.+..+...+.++++.+.....+..++. ++.+|||||+++|..++..+++.+|++++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 57999999999999999999998887777777777776666666654 6889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.... +|...+......+.|+++|+||+|+....... ....+. ..+ .++++++||++|.|+++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFA------DEL--GIPFLETSAKNATNVEQ 154 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHH------HHc--CCeEEEEECCCCcCHHH
Confidence 99984322 22222222222468999999999986532111 111111 111 35899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.+...
T Consensus 155 ~~~~i~~~ 162 (166)
T cd01869 155 AFMTMARE 162 (166)
T ss_pred HHHHHHHH
Confidence 99999754
No 212
>KOG0095|consensus
Probab=99.75 E-value=5e-18 Score=167.08 Aligned_cols=154 Identities=21% Similarity=0.218 Sum_probs=125.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
-.+|+++|..|+|||+|+++++.+-|+.+...+|..++-...++.++. ++++|||+|+|+|++....+++.|+++|||
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 368999999999999999999999999998888999988888888775 788999999999999999999999999999
Q ss_pred EeCCC----CCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 147 VAADD----GVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 147 vda~~----g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
+|.+. ...|.|...+......++--|+|+||+|+.+. .++.+++-++.... .+.-|+++||+..+|++.|
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr--revp~qigeefs~~----qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR--REVPQQIGEEFSEA----QDMYFLETSAKEADNVEKL 160 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh--hhhhHHHHHHHHHh----hhhhhhhhcccchhhHHHH
Confidence 99987 44678888787777777778999999998652 11222221111100 1235889999999999999
Q ss_pred HHHHHH
Q psy1758 223 LENISL 228 (1527)
Q Consensus 223 ~~~l~~ 228 (1527)
|..++.
T Consensus 161 f~~~a~ 166 (213)
T KOG0095|consen 161 FLDLAC 166 (213)
T ss_pred HHHHHH
Confidence 998863
No 213
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.75 E-value=2.5e-17 Score=176.39 Aligned_cols=152 Identities=22% Similarity=0.237 Sum_probs=113.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+...+.++++.+.....+..++. .++||||||++.|..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 37999999999999999999999987777777777776666666554 7889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHH-----cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 148 AADDGVMP----QTREAIAHAKI-----SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~-----~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
|+++.... .|...+..... .+.|+++|+||+|+.+... ......+. ..++ .+++++||++|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~ 152 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA------ESKG--FKYFETSACTG 152 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH------HHcC--CeEEEEECCCC
Confidence 99984322 22222222211 4689999999999963111 11111111 1122 57999999999
Q ss_pred CChhHHHHHHHHH
Q psy1758 217 VGINKLLENISLQ 229 (1527)
Q Consensus 217 ~gI~eL~~~l~~~ 229 (1527)
.|++++++.|...
T Consensus 153 ~gi~~l~~~l~~~ 165 (168)
T cd04119 153 EGVNEMFQTLFSS 165 (168)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998743
No 214
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.75 E-value=1.2e-17 Score=180.14 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=109.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
+..+|+++|++|+|||||+++|....+. ...++++.+.. .+...+..+.+|||||++.|..++..+++.+|++|+|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4578999999999999999999876653 33444444443 34456778999999999999999999999999999999
Q ss_pred eCCCCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcc-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.. .....+.+.... ..++|+++|+||+|+.+. ..++....+... ......++++++||++|.|+++
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~----~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLT----RIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCC----ccCCCcEEEEEeeCCCCCChHH
Confidence 999843 222333333221 246899999999998653 222222221111 1111234789999999999999
Q ss_pred HHHHHH
Q psy1758 222 LLENIS 227 (1527)
Q Consensus 222 L~~~l~ 227 (1527)
+|++|.
T Consensus 161 ~~~~l~ 166 (168)
T cd04149 161 GLTWLS 166 (168)
T ss_pred HHHHHh
Confidence 999985
No 215
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.75 E-value=1.4e-17 Score=178.61 Aligned_cols=161 Identities=34% Similarity=0.396 Sum_probs=124.5
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---CeEEEEEeCCCCCCchH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~iniiDTPGh~df~~ 1000 (1527)
.|+|+|++|+|||||+++|+..... ....+++|.......+.+. ++.+++|||||+.+|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA----------------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc----------------cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 6999999999999999999754111 1123466766666666664 78999999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+..++..+|++++|+|++++...++...+..+...++|+++|+||+|+...+.+.+..++...... ........+|++
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 144 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQ-GEDEWGGDVQIV 144 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhcc-ccccccCcCcEE
Confidence 8888999999999999999998899988888888899999999999999765544444444332111 000112346899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++||++|. |+.+|++++.++.
T Consensus 145 ~~Sa~~~~----------gi~~l~~~l~~~~ 165 (168)
T cd01887 145 PTSAKTGE----------GIDDLLEAILLLA 165 (168)
T ss_pred EeecccCC----------CHHHHHHHHHHhh
Confidence 99999998 9999999997653
No 216
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.75 E-value=1.3e-17 Score=180.63 Aligned_cols=154 Identities=17% Similarity=0.218 Sum_probs=108.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+.++|+++|++|+|||||+++|.+..+. ...+++. +....+.+++..+.+|||||++.|..++..+++.+|++++|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 35678999999999999999999877542 2223222 23344556678899999999999999999999999999999
Q ss_pred EeCCCCCc-HHHHHHHH----HHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVM-PQTREAIA----HAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~-~qt~e~i~----~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++... ......+. .....+.|+++|+||+|+.+... ++....+ ... ......++++++||++|.|++
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREAL-ELD---KISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHh-Ccc---ccCCCceEEEeccCCCCcCHH
Confidence 99998521 11122222 22235789999999999975321 2221111 110 011234689999999999999
Q ss_pred HHHHHHH
Q psy1758 221 KLLENIS 227 (1527)
Q Consensus 221 eL~~~l~ 227 (1527)
++|+++.
T Consensus 165 ~l~~~l~ 171 (173)
T cd04154 165 QGIDWLV 171 (173)
T ss_pred HHHHHHh
Confidence 9999885
No 217
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.75 E-value=1.6e-17 Score=177.37 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=107.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++|++|+|||||++++....+. ...+++..+. ..+......+.+|||||++.|..++..+++.+|++|+|+|++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~ 78 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 78 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC
Confidence 6999999999999999999877764 3445444333 334566778999999999999999999999999999999998
Q ss_pred CCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 151 DGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 151 ~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+.. ..+..+.+..+. ..+.|+++++||+|+.+... .+....+. ........+.++++||++|.|++++|+
T Consensus 79 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~----~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 79 DRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLG----LHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred CHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhC----ccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 732 222333333221 23589999999999965322 22222221 111112234688999999999999999
Q ss_pred HHH
Q psy1758 225 NIS 227 (1527)
Q Consensus 225 ~l~ 227 (1527)
+|.
T Consensus 155 ~l~ 157 (159)
T cd04150 155 WLS 157 (159)
T ss_pred HHh
Confidence 884
No 218
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.75 E-value=2.5e-17 Score=175.80 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=111.9
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC----CeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN----HGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~----~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|+++|++|+|||||++++....+.....++++.++....+... ..++.||||||+++|...+..+++.+|++++|
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v 81 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILV 81 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEE
Confidence 79999999999999999999988876667777777655555554 34789999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHH-H--HHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 147 VAADDGVMPQTREAIAH-A--KISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~-~--~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+++....+....|.. + ...++|+++|+||+|+...... .....+. ..+ .++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 82 FSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALA------KRL--QLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHH------HHc--CCeEEEEECCCCCCHHH
Confidence 99998443333222221 1 1247899999999998653211 1111111 111 24899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+++.|..
T Consensus 154 l~~~l~~ 160 (162)
T cd04106 154 LFEYLAE 160 (162)
T ss_pred HHHHHHH
Confidence 9999863
No 219
>KOG1143|consensus
Probab=99.75 E-value=2e-17 Score=184.73 Aligned_cols=284 Identities=19% Similarity=0.214 Sum_probs=216.1
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe--------------------
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-------------------- 982 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-------------------- 982 (1527)
.++|++|..|+|||||+..|+.. ..+........-+-.+..|...|-|-..++..+-+
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQg--eLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQG--ELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEEecCcccCcceeeeeeecc--cccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 37999999999999999999743 33322221223345667777777775544433322
Q ss_pred -cCeEEEEEeCCCCCCchHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-ChhhhH
Q psy1758 983 -NGTRINIIDTPGHADFGGEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVV 1058 (1527)
Q Consensus 983 -~~~~iniiDTPGh~df~~ev~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~v~ 1058 (1527)
....+++||.+||..|...+..+| ...|.|+|||+|..|+.-.|++|+.++.++++|.+|+++|||+.+. ..+..+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv 325 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTV 325 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHH
Confidence 134689999999999999888887 4579999999999999999999999999999999999999999754 357788
Q ss_pred HHHHHHHhhhcccccc-------------------cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC--
Q psy1758 1059 DATFDLFDKLCATEEQ-------------------LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN-- 1117 (1527)
Q Consensus 1059 ~~~~~~~~~l~~~~~~-------------------~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~-- 1117 (1527)
.++..++.+.+....+ --.|++.+|..+|. |+ .|+..++..+|+....
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGe----------gl-~ll~~fLn~Lsp~~~~~e 394 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGE----------GL-RLLRTFLNCLSPAGTAEE 394 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCcc----------ch-hHHHHHHhhcCCcCChHH
Confidence 8888877655433211 12699999999998 76 6777777877654322
Q ss_pred ----CCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE
Q psy1758 1118 ----SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193 (1527)
Q Consensus 1118 ----~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva 1193 (1527)
...|..++|..++..|.+|.++-|-+.+|.++.|+.+.+.|.+||...+.+|.+|.. ++.++.-+.||+-..
T Consensus 395 ~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~R----nr~acrvvraGqaAs 470 (591)
T KOG1143|consen 395 RIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRR----NRQACRVVRAGQAAS 470 (591)
T ss_pred HHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeec----cccceeeecCcccee
Confidence 246778899999999999999999999999999999999998888877888998864 467888999999887
Q ss_pred Eecce----ecccCCeeeCCCCCCCCCCCccCCCceeEEEEecC
Q psy1758 1194 ITGIE----EICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNN 1233 (1527)
Q Consensus 1194 i~gl~----~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~ 1233 (1527)
++--+ .++.|.++...+.. |.+...|.++-
T Consensus 471 lsl~d~D~~~LR~GMVl~~~~~n----------P~~c~~F~A~~ 504 (591)
T KOG1143|consen 471 LSLNDPDGVSLRRGMVLAEIDHN----------PPVCYEFTANL 504 (591)
T ss_pred eeccCCCccchhcceEEeecCCC----------CceEEEEeeee
Confidence 75321 35567777654432 55677776543
No 220
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=3.1e-17 Score=182.22 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=114.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-C--eEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-H--GSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||+++|....+...+.++++.++....+.++ + ..+.||||||++.|..++..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 379999999999999999999988877777777777666566655 3 3688999999999999999999999999999
Q ss_pred EeCCCCCcHHHH----HHHHHH-H---HcCCCEEEEEEcccCCcch--hHHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 147 VAADDGVMPQTR----EAIAHA-K---ISGVPLIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 147 vda~~g~~~qt~----e~i~~~-~---~~~vpiIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+|+++....+.. ..+... . ..++|+++|+||+|+.+.. .......+... . +..+++++||++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------~-~~~~~~e~Sak~~ 153 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE------N-GFIGWFETSAKEG 153 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH------c-CCceEEEEeCCCC
Confidence 999984332222 222211 1 2468999999999996311 11111122111 1 1247999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.|++++|++|....
T Consensus 154 ~~v~e~f~~l~~~l 167 (201)
T cd04107 154 INIEEAMRFLVKNI 167 (201)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998543
No 221
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.75 E-value=2e-17 Score=190.79 Aligned_cols=117 Identities=32% Similarity=0.382 Sum_probs=103.1
Q ss_pred EEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
+|+++||+|+|||||+++|..... ......|+|++.....+.|++.+++|||||||.+|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999864211 12234689999999999999999999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~ 187 (1527)
+.++++.+|++++|+|+.+++..++...+..+...++|+++++||+|+.+++.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~ 135 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFR 135 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999998655433
No 222
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.75 E-value=2.3e-17 Score=176.10 Aligned_cols=151 Identities=18% Similarity=0.142 Sum_probs=114.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....++.+.+.....+..++. .+.||||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 37999999999999999999998887777777776666666666554 6889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.... +|.+.+......++|+++|+||+|+...... .....+.. .++ ++++++||++|.|+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------~~~--~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQ------ENG--LLFLETSALTGENVEE 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHH------HcC--CEEEEEECCCCCCHHH
Confidence 99985433 3333333344468899999999999652211 11111111 122 5899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|+.++.
T Consensus 153 ~~~~~~~ 159 (161)
T cd04113 153 AFLKCAR 159 (161)
T ss_pred HHHHHHH
Confidence 9999864
No 223
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.75 E-value=1e-17 Score=181.91 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=111.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+.++....+...+.|++..+.. ..+..++ ..+.+|||||+++|..++..+++.+|++|+|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 57999999999999999999998887677776655543 2345555 36789999999999999999999999999999
Q ss_pred eCCCCCcHHHH-H-HHHHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhhh--ccc-------ccccCCCCcEEEeecc
Q psy1758 148 AADDGVMPQTR-E-AIAHAK--ISGVPLIVAINKIDKLDINLDRIKQDLISE--QVI-------PEEYGGASPFISISAK 214 (1527)
Q Consensus 148 da~~g~~~qt~-e-~i~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~--~~~-------~~~~~~~~~v~~iSAk 214 (1527)
|+++....+.. + ++..+. ..++|+|+|+||+|+.+... ....+... ... .....+.++++++||+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~--~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS--TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChh--hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 99985433222 1 122222 24789999999999865321 11111100 000 0001223689999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|++++|+.++.+
T Consensus 159 tg~~v~~~f~~~~~~ 173 (175)
T cd01874 159 TQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 224
>PRK15494 era GTPase Era; Provisional
Probab=99.75 E-value=1.9e-17 Score=197.40 Aligned_cols=157 Identities=25% Similarity=0.276 Sum_probs=119.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh-hH-------HHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE-AF-------TAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e-~f-------~~~~~~~~ 137 (1527)
.+..+|+++|++|||||||+|+|.+..+ ..++.+++|++.....+.+++.++.||||||+. .+ ......++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4556999999999999999999998876 456677888888777888888999999999973 22 22223457
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
..||++++|+|+.++.......++..+...+.|.|+|+||+|+.+.........+. ......++|++||++|.
T Consensus 130 ~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~-------~~~~~~~i~~iSAktg~ 202 (339)
T PRK15494 130 HSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLT-------ENHPDSLLFPISALSGK 202 (339)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHH-------hcCCCcEEEEEeccCcc
Confidence 89999999999988776666666666777788989999999996532222222111 11223579999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|+++|+++|....
T Consensus 203 gv~eL~~~L~~~l 215 (339)
T PRK15494 203 NIDGLLEYITSKA 215 (339)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999997543
No 225
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.74 E-value=2.8e-17 Score=176.84 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=111.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++....+.....+++..++....+..++. .+.+|||||++.|..++...+..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 37999999999999999999987776666666655555555554443 6889999999999998888999999999999
Q ss_pred eCCCCCcHHHHHHH-HHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 148 AADDGVMPQTREAI-AHAKI--SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 148 da~~g~~~qt~e~i-~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
|+++....+....| ..+.. .++|+++|+||+|+...........+. . ....+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~------~--~~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFH------R--KKNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHH------H--HcCCEEEEEeCCCCCChHHHHH
Confidence 99985443332222 22221 279999999999997422111111111 1 1235899999999999999999
Q ss_pred HHHHHH
Q psy1758 225 NISLQA 230 (1527)
Q Consensus 225 ~l~~~~ 230 (1527)
.|....
T Consensus 153 ~l~~~~ 158 (166)
T cd00877 153 WLARKL 158 (166)
T ss_pred HHHHHH
Confidence 998553
No 226
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.74 E-value=1.3e-17 Score=180.73 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=111.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++++|||||+.++....+...+.+++.... ...+..++. ++.||||+|+++|..++..+++.+|++|+|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 4799999999999999999999998777777665444 233445554 7889999999999999999999999999999
Q ss_pred eCCCCCcHHHH--HHHHHHH--HcCCCEEEEEEcccCCcchhH--------HHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 148 AADDGVMPQTR--EAIAHAK--ISGVPLIVAINKIDKLDINLD--------RIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 148 da~~g~~~qt~--e~i~~~~--~~~vpiIvviNKiDl~~~~~~--------~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
|.++....+.. .++..++ ..++|+++|+||+|+.+.... .+..+.. ......+ +..+++++||++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~--~~~a~~~-~~~~~~E~SAk~ 157 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQG--EELRKQI-GAAAYIECSSKT 157 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHH--HHHHHHc-CCCEEEECCCCc
Confidence 99985443322 1222222 247899999999999652110 0000000 0011111 223699999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.||+++|+.++..
T Consensus 158 ~~nV~~~F~~~~~~ 171 (176)
T cd04133 158 QQNVKAVFDAAIKV 171 (176)
T ss_pred ccCHHHHHHHHHHH
Confidence 99999999999754
No 227
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.74 E-value=3.6e-17 Score=178.85 Aligned_cols=159 Identities=38% Similarity=0.564 Sum_probs=124.6
Q ss_pred EEEEEecCCCChhHHHHHHHcccccccc----------------CCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHH
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSE----------------AGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRA 134 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~----------------~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~ 134 (1527)
+|+++|.+|+|||||+++|.+....... ..++|.+.....+.+.+..++||||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999887654322 346777777777788888999999999999999999
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc-chhHHHHHHHhhhccccc---------ccCC
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD-INLDRIKQDLISEQVIPE---------EYGG 204 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~-~~~~~~~~~l~~~~~~~~---------~~~~ 204 (1527)
.+++.+|++++|+|+.++...+..+.+..+...+.|+++|+||+|+.. .........+........ ....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence 999999999999999998888888888888878999999999999975 222222222222111100 0123
Q ss_pred CCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 205 ASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 205 ~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
..+++++||++|.|++++++.|...
T Consensus 161 ~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 161 LVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred cceEEEEecccCcCHHHHHHHHHhh
Confidence 5789999999999999999998643
No 228
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.74 E-value=4.3e-18 Score=159.08 Aligned_cols=78 Identities=49% Similarity=0.941 Sum_probs=75.5
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeec
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF 1394 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~ 1394 (1527)
|||++++|.||++|+|+||++|++|||++.+++..++++++|+|.+|+++++||+++|+++|+|+|+|+++|+||+|+
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999875578999999999999999999999999999999999999996
No 229
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.74 E-value=1.4e-17 Score=177.69 Aligned_cols=152 Identities=22% Similarity=0.241 Sum_probs=107.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++....+.....+++. +.....+..++. .+.||||||+++|..++..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 5899999999999999999998877655544443 333334455554 5778999999999999999999999999999
Q ss_pred eCCCCCcHHH-HHHHHHHH----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 148 AADDGVMPQT-REAIAHAK----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 148 da~~g~~~qt-~e~i~~~~----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|+++....+. ..++..+. ..++|+++|+||+|+.+........ .. .....++ .+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~---~~~~~~~--~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREE-GQ---ALARQWG--CPFYETSAKSKINVDEV 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHH-HH---HHHHHcC--CeEEEecCCCCCCHHHH
Confidence 9998432221 12222222 2468999999999986522111100 00 0111222 68999999999999999
Q ss_pred HHHHHH
Q psy1758 223 LENISL 228 (1527)
Q Consensus 223 ~~~l~~ 228 (1527)
|+++..
T Consensus 155 ~~~l~~ 160 (163)
T cd04136 155 FADLVR 160 (163)
T ss_pred HHHHHH
Confidence 999864
No 230
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.74 E-value=2.5e-17 Score=175.28 Aligned_cols=150 Identities=23% Similarity=0.282 Sum_probs=107.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....+++.... ...+..++. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 5799999999999999999998887655555443322 334445554 5778999999999999999999999999999
Q ss_pred eCCCCCcHHHH-HHHHHH----HHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTR-EAIAHA----KISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~-e~i~~~----~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+.. .++..+ ...+.|+++|+||+|+...... .....+. ..+ .++++++||++|.|+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA------KSY--GIPYIETSAKTRQGVEE 152 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH------HHh--CCeEEEecCCCCCCHHH
Confidence 99974322221 112222 2347899999999998652211 1111111 111 24899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|+++..
T Consensus 153 l~~~l~~ 159 (162)
T cd04138 153 AFYTLVR 159 (162)
T ss_pred HHHHHHH
Confidence 9999864
No 231
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.74 E-value=4.5e-17 Score=175.43 Aligned_cols=151 Identities=19% Similarity=0.162 Sum_probs=112.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++.+..+...+.++++.+.....+..++ ..+.+|||||+++|..++..+++.+|++++|+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999887666666656665555555555 37889999999999999999999999999999
Q ss_pred eCCCCCcHHHHHH-HHHH---HHcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMPQTREA-IAHA---KISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~qt~e~-i~~~---~~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+++....+.... +..+ ...+.|+++|+||+|+.... ..... .+.. .+ ..+++++||++|.|++
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~-~~~~------~~--~~~~~e~Sa~~~~~i~ 155 (168)
T cd01866 85 DITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGE-AFAK------EH--GLIFMETSAKTASNVE 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHH-HHHH------Hc--CCEEEEEeCCCCCCHH
Confidence 9997433332222 2222 23478999999999987422 11111 1111 11 2579999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.+...
T Consensus 156 ~~~~~~~~~ 164 (168)
T cd01866 156 EAFINTAKE 164 (168)
T ss_pred HHHHHHHHH
Confidence 999998754
No 232
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=3.7e-17 Score=202.88 Aligned_cols=221 Identities=22% Similarity=0.311 Sum_probs=151.1
Q ss_pred HHHHHHHhCCCcc--Ccccc--CCHHHHHHHHHhcCCcee-------ecCCCCchhhhhhhcccCcc-cccccCCCEEEE
Q psy1758 7 VVIKNLMKLGQMV--TINQV--LDQETAMILVEEMGHVAH-------ASKLNDPESFLLNEYNKNIT-AESLVRAPIVTI 74 (1527)
Q Consensus 7 ~~i~~l~~~g~~~--~~~~~--l~~~~~~~~a~~~g~~~~-------~~~~~~~~~~~~~~l~~~~~-~~~~~r~~~V~I 74 (1527)
++.+.|...+..+ -.|.. .+.+....-+..+|+... ..++.++.+.+...+..... .......++|++
T Consensus 98 ~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~i 177 (429)
T TIGR03594 98 EIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAI 177 (429)
T ss_pred HHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEE
Confidence 4677777767642 22332 222222222345555211 12233344444444433221 122345679999
Q ss_pred EecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh----------hHHHHH-HhhccccCE
Q psy1758 75 MGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE----------AFTAMR-ARGAKVTDI 142 (1527)
Q Consensus 75 vG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e----------~f~~~~-~~~~~~aD~ 142 (1527)
+|++|+|||||+++|.+... ..++.+|+|++.....+.+++..+.+|||||+. .|..++ ..+++.+|+
T Consensus 178 vG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 257 (429)
T TIGR03594 178 IGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADV 257 (429)
T ss_pred ECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCE
Confidence 99999999999999998764 567788999999888888888899999999963 333333 357789999
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc-c-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 143 VVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD-I-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~-~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+|+|++++...++...+..+...++|+++|+||+|+.. . ........+.... .....+|++++||++|.|++
T Consensus 258 ~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~vi~~SA~~g~~v~ 333 (429)
T TIGR03594 258 VLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKL----PFLDFAPIVFISALTGQGVD 333 (429)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhc----ccCCCCceEEEeCCCCCCHH
Confidence 9999999999999999999988888999999999999972 1 1122222222111 11234799999999999999
Q ss_pred HHHHHHHHHHH
Q psy1758 221 KLLENISLQAE 231 (1527)
Q Consensus 221 eL~~~l~~~~~ 231 (1527)
++++.+....+
T Consensus 334 ~l~~~i~~~~~ 344 (429)
T TIGR03594 334 KLLDAIDEVYE 344 (429)
T ss_pred HHHHHHHHHHH
Confidence 99999986544
No 233
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.74 E-value=1.8e-17 Score=177.87 Aligned_cols=156 Identities=19% Similarity=0.259 Sum_probs=107.3
Q ss_pred EEEEEecCCCChhHHHHHHHccccc----cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVV----FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~----~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|+++|++|+|||||+++|...... .......|.......+.+++..+.+||||||+.|..++...++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4899999999999999999764321 111123344444455677788999999999999999999999999999999
Q ss_pred EeCCCCCc-HHHHHHHHHH----HHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 147 VAADDGVM-PQTREAIAHA----KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 147 vda~~g~~-~qt~e~i~~~----~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+++... .+....+..+ ...++|+++++||+|+................. .......++++++||++|.|+++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKA-EEIGRRDCLVLPVSALEGTGVRE 159 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcccc-ccccCCceEEEEeeCCCCcCHHH
Confidence 99987421 1122222222 235799999999999865422222222211111 00111235899999999999999
Q ss_pred HHHHHH
Q psy1758 222 LLENIS 227 (1527)
Q Consensus 222 L~~~l~ 227 (1527)
++++|.
T Consensus 160 ~~~~l~ 165 (167)
T cd04160 160 GIEWLV 165 (167)
T ss_pred HHHHHh
Confidence 999985
No 234
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.74 E-value=2.3e-17 Score=175.89 Aligned_cols=152 Identities=17% Similarity=0.201 Sum_probs=106.2
Q ss_pred EEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
+|+++|++|+|||||+++|.+..+ .....+++.... ..+...+.++.+|||||++.|..++..+++.+|++|+|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 489999999999999999998753 333334333222 33456777899999999999999999999999999999999
Q ss_pred CCCCcHH-HHHHHHHH------HHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 150 DDGVMPQ-TREAIAHA------KISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 150 ~~g~~~q-t~e~i~~~------~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
++..... ....+..+ ...++|+++|+||+|+.+... .+....+. . .......++++++||++|.|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~-~---~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 79 SDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLG-L---ENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred CcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhC-C---ccccCceEEEEEeeCCCCCchHH
Confidence 9854321 11122211 124799999999999976432 22221111 1 11011234689999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|++|..
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999853
No 235
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.74 E-value=3.3e-17 Score=174.58 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=115.6
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||++++.+..+...+.++++.+.....+..++. ++.+|||||++.|..++...++.+|++++|+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 81 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 7999999999999999999999988888888998888877777764 68899999999999999999999999999999
Q ss_pred CCCCCcHHHHH-HHHHHH-H--cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 149 ADDGVMPQTRE-AIAHAK-I--SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 149 a~~g~~~qt~e-~i~~~~-~--~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
+++....+... ++..+. . .+.|+++++||+|+..... .+....+.. .. .++++++||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 82 ITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK------EL--NAMFIETSAKAGHNVKEL 153 (161)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHH------Hh--CCEEEEEeCCCCCCHHHH
Confidence 99854332222 222222 2 2489999999999953211 111111111 11 268999999999999999
Q ss_pred HHHHHH
Q psy1758 223 LENISL 228 (1527)
Q Consensus 223 ~~~l~~ 228 (1527)
++++..
T Consensus 154 ~~~i~~ 159 (161)
T cd01861 154 FRKIAS 159 (161)
T ss_pred HHHHHH
Confidence 999864
No 236
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.74 E-value=3.8e-17 Score=179.96 Aligned_cols=160 Identities=13% Similarity=0.144 Sum_probs=112.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|+.++|||||+.++....+...+.+++..+.. ..+..++. .+.+|||||+++|..++..+++.+|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 468999999999999999999998887666666654432 23344554 688899999999999999999999999999
Q ss_pred EeCCCCCcHHHHH-HH-HHHH--HcCCCEEEEEEcccCCcchhH-HHHHHHh-------hhcccccccCCCCcEEEeecc
Q psy1758 147 VAADDGVMPQTRE-AI-AHAK--ISGVPLIVAINKIDKLDINLD-RIKQDLI-------SEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 147 vda~~g~~~qt~e-~i-~~~~--~~~vpiIvviNKiDl~~~~~~-~~~~~l~-------~~~~~~~~~~~~~~v~~iSAk 214 (1527)
||+++....+... .| ..+. ..++|+++|+||+|+.+.... +...... +....... .+.++++++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~-~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQ-IHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHH-cCCcEEEEeCCC
Confidence 9999844332221 12 1121 247899999999999653211 0000000 00000111 123589999999
Q ss_pred CCCChhHHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQA 230 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~~ 230 (1527)
+|.||+++|+.++...
T Consensus 161 ~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 161 NQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998543
No 237
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.74 E-value=3.8e-17 Score=175.57 Aligned_cols=150 Identities=19% Similarity=0.199 Sum_probs=107.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh----------HHHHHHhhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA----------FTAMRARGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~----------f~~~~~~~~~~ 139 (1527)
|+|+++|++|+|||||+++|.+..+..+..+++|.+.....+.+++.+++||||||+.. +..+. .....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-ALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHH-HHHhc
Confidence 57999999999999999999998876666677788777777777788999999999742 11111 11234
Q ss_pred cCEEEEEEeCCCCCc---HHHHHHHHHHHHc--CCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 140 TDIVVLVVAADDGVM---PQTREAIAHAKIS--GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 140 aD~~IlVvda~~g~~---~qt~e~i~~~~~~--~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
+|++++|+|+++... ....+++..++.. +.|+++|+||+|+............. .. ...+++++||+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~-------~~-~~~~~~~~Sa~ 151 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEE-------EL-EGEEVLKISTL 151 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhh-------hh-ccCceEEEEec
Confidence 689999999987432 2333444445444 78999999999997532211111111 11 23589999999
Q ss_pred CCCChhHHHHHHHH
Q psy1758 215 TGVGINKLLENISL 228 (1527)
Q Consensus 215 tg~gI~eL~~~l~~ 228 (1527)
+|.|++++++++..
T Consensus 152 ~~~gi~~l~~~l~~ 165 (168)
T cd01897 152 TEEGVDEVKNKACE 165 (168)
T ss_pred ccCCHHHHHHHHHH
Confidence 99999999999864
No 238
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.74 E-value=4.7e-18 Score=162.64 Aligned_cols=82 Identities=30% Similarity=0.499 Sum_probs=77.6
Q ss_pred eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceee
Q psy1758 1314 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAP 1393 (1527)
Q Consensus 1314 ~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~ 1393 (1527)
++||||++++|.+|++|+|+|+++|++|||++.++...+++++.|+|.+|+++++||+++|++.|+|+|+|++.|+||+|
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 58999999999999999999999999999999999997668999999999999999999999999999999999999999
Q ss_pred cc
Q psy1758 1394 FY 1395 (1527)
Q Consensus 1394 ~~ 1395 (1527)
+.
T Consensus 81 ~~ 82 (89)
T PF00679_consen 81 VP 82 (89)
T ss_dssp ES
T ss_pred CC
Confidence 98
No 239
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=3.4e-17 Score=204.36 Aligned_cols=153 Identities=26% Similarity=0.358 Sum_probs=123.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh--------hHHHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE--------AFTAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e--------~f~~~~~~~~ 137 (1527)
.+.++|+|+|++|||||||+|+|.+... .....+|+|++.....+.+++..+.||||||++ .|...+..++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3558999999999999999999998764 567888999999999899999999999999975 3555566788
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+.||++|+|+|++++......+++..+...++|+++|+||+|+....... .+.. ..+- ...+++||++|.
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~--~~~~-------~~g~-~~~~~iSA~~g~ 185 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADA--AALW-------SLGL-GEPHPVSALHGR 185 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhh--HHHH-------hcCC-CCeEEEEcCCCC
Confidence 99999999999999887777777777888899999999999986532111 1110 1111 134799999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
|+++|++.|...
T Consensus 186 gi~eL~~~i~~~ 197 (472)
T PRK03003 186 GVGDLLDAVLAA 197 (472)
T ss_pred CcHHHHHHHHhh
Confidence 999999999754
No 240
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.74 E-value=3.9e-17 Score=174.99 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=114.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+++|.+..+.....++++.++....+..++. .+.+|||||++.|..++..+++.+|++|+|+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 83 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 83 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEE
Confidence 58999999999999999999998887777777777777777777665 6889999999999999999999999999999
Q ss_pred eCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+ |...+......++|+++|+||+|+..... .+....+.. .+ .++++++||++|.|+++
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 84 DITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE------KN--GLSFIETSALDGTNVEE 155 (165)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHH------Hc--CCEEEEEECCCCCCHHH
Confidence 999733222 22222222223689999999999865321 111111111 11 25899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+++.+..
T Consensus 156 l~~~l~~ 162 (165)
T cd01868 156 AFKQLLT 162 (165)
T ss_pred HHHHHHH
Confidence 9999864
No 241
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.74 E-value=2.4e-17 Score=178.39 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=111.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|.+|+|||||++++....+.....+++.... ...+..++. .+.||||||++.|..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 46899999999999999999998888655555554333 233455553 688999999999999999999999999999
Q ss_pred EeCCCCCcHHHHH----HHHHHH-HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 147 VAADDGVMPQTRE----AIAHAK-ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 147 vda~~g~~~qt~e----~i~~~~-~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+++....+... .+.... ..++|+++|+||+|+.+........ .. .....+ .++++++||++|.||++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~--~~--~~a~~~--~~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEE--GR--NLAREF--NCPFFETSAALRHYIDD 154 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHH--HH--HHHHHh--CCEEEEEecCCCCCHHH
Confidence 9999865443332 233322 2478999999999986421110000 00 011112 35899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|++|+..
T Consensus 155 ~f~~l~~~ 162 (172)
T cd04141 155 AFHGLVRE 162 (172)
T ss_pred HHHHHHHH
Confidence 99999754
No 242
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.74 E-value=2.6e-17 Score=191.03 Aligned_cols=152 Identities=21% Similarity=0.244 Sum_probs=113.6
Q ss_pred EEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh--------HHHHHHhhccccC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA--------FTAMRARGAKVTD 141 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~--------f~~~~~~~~~~aD 141 (1527)
+|+++|++|+|||||+|+|.+..+ .++..+++|++........++.++.||||||+.. +......++..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 699999999999999999999886 5678889999876666666777899999999532 1223446678999
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 142 IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
++++|+|+++....+ ...+..+...+.|+++|+||+|+... .......... .......+++++||++|.|+++
T Consensus 82 vvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~----~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 82 LILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFK--DKLLPLIDKY----AILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred EEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCH--HHHHHHHHHH----HhhcCCCceEEEecCCCCCHHH
Confidence 999999999865544 44455666778999999999999642 1111111111 0111223799999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
|++.|...
T Consensus 155 L~~~l~~~ 162 (270)
T TIGR00436 155 LAAFIEVH 162 (270)
T ss_pred HHHHHHHh
Confidence 99999754
No 243
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.74 E-value=4.6e-17 Score=175.85 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=113.3
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||++++....+...+.+++..++....+..++. .+.||||||+++|..++..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 6999999999999999999999888777787777766556666654 68899999999999999999999999999999
Q ss_pred CCCCCcHHHH-HHHHHHHH----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 149 ADDGVMPQTR-EAIAHAKI----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 149 a~~g~~~qt~-e~i~~~~~----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
+++....+.. +++..+.. ...|+++|+||+|+.+............ .....+ ..+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~--~~~~~~--~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAI--KLAAEM--QAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHH--HHHHHc--CCeEEEEECCCCCCHHHHH
Confidence 9873322222 22222222 2356999999999865321111010000 001111 2479999999999999999
Q ss_pred HHHHHHH
Q psy1758 224 ENISLQA 230 (1527)
Q Consensus 224 ~~l~~~~ 230 (1527)
+.|...+
T Consensus 158 ~~l~~~~ 164 (170)
T cd04108 158 FRVAALT 164 (170)
T ss_pred HHHHHHH
Confidence 9998654
No 244
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=3.8e-17 Score=183.67 Aligned_cols=157 Identities=27% Similarity=0.389 Sum_probs=117.2
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccC--------------CceeEEEEE------------------------EEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEA--------------GGITQHIGA------------------------YNVV 112 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~--------------~giT~~~~~------------------------~~~~ 112 (1527)
+|+++|++++|||||+++|....+..+.. .|+|..+.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 48999999999999999998654422111 233332111 2234
Q ss_pred eCCeEEEEEeCCChhhHHHHHHhhcc--ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHH
Q psy1758 113 TNHGSITFLDTPGHEAFTAMRARGAK--VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIK 189 (1527)
Q Consensus 113 ~~~~~i~~iDTPG~e~f~~~~~~~~~--~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~ 189 (1527)
..++.++|+|||||++|...+.+++. .+|++++|+|++++..+++.+++..+...++|+++|+||+|+.+.+ .....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~ 160 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETL 160 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHH
Confidence 45678999999999999998888875 7999999999999999999999999999999999999999986532 22333
Q ss_pred HHHhhhccc---------------------ccccCCCCcEEEeeccCCCChhHHHHHHH
Q psy1758 190 QDLISEQVI---------------------PEEYGGASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 190 ~~l~~~~~~---------------------~~~~~~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
.++...... ...+...+|+|++||.+|+|+++|.+.|.
T Consensus 161 ~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 161 KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 322221110 01234457999999999999999999885
No 245
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.73 E-value=5.3e-17 Score=176.68 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=112.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC------------CeEEEEEeCCChhhHHHHHHhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN------------HGSITFLDTPGHEAFTAMRARG 136 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~------------~~~i~~iDTPG~e~f~~~~~~~ 136 (1527)
..+|+++|++|+|||||++++....+.....++++.++....+.+. ...+.||||||++.|..++..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 4689999999999999999999988877777777666655545443 2478899999999999999999
Q ss_pred ccccCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEE
Q psy1758 137 AKVTDIVVLVVAADDGVMPQTRE-AIAHAKI----SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFI 209 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g~~~qt~e-~i~~~~~----~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~ 209 (1527)
++.+|++++|+|+++....+... ++..+.. .+.|+++|+||+|+.+... .+....+.. .+ .++++
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~ 155 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD------KY--GIPYF 155 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH------Hc--CCeEE
Confidence 99999999999999843322222 1222222 3678999999999965321 111111111 12 25899
Q ss_pred EeeccCCCChhHHHHHHHHH
Q psy1758 210 SISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 210 ~iSAktg~gI~eL~~~l~~~ 229 (1527)
++||++|.|++++|+.|...
T Consensus 156 e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999743
No 246
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.73 E-value=1.9e-17 Score=177.33 Aligned_cols=151 Identities=26% Similarity=0.275 Sum_probs=108.2
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||++++..+.+.....+++.... ...+..++. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998776555545443332 344555554 5679999999999999999999999999999
Q ss_pred eCCCCCcHH----HHHHHHH-HHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMPQ----TREAIAH-AKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~-~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|.++....+ |...+.. ....+.|+++|+||+|+....... ....+. ..+ .++++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~~v~ 152 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA------RQW--GCAFLETSAKAKINVN 152 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH------HHh--CCEEEEeeCCCCCCHH
Confidence 998743222 2222221 123578999999999996532111 111111 112 2589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+++...
T Consensus 153 ~~~~~l~~~ 161 (164)
T cd04175 153 EIFYDLVRQ 161 (164)
T ss_pred HHHHHHHHH
Confidence 999999743
No 247
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.73 E-value=4e-17 Score=177.23 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=111.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
...+|+++|++|+|||||++++..+.+. ...++++.++. .+...+..+.||||||++.|..++..+++.+|++|+|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 3578999999999999999999776663 34455555443 34556778999999999999999999999999999999
Q ss_pred eCCCCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.. .....+.+..+. ..++|++||+||+|+.+.. ..++...+. ........+.++++||++|.|+++
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~----~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLG----LHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhC----ccccCCCcEEEEEeeCCCCCCHHH
Confidence 999743 223333443332 2368999999999997532 222222211 111112234678999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|++|...
T Consensus 165 ~~~~l~~~ 172 (175)
T smart00177 165 GLTWLSNN 172 (175)
T ss_pred HHHHHHHH
Confidence 99998644
No 248
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=7e-17 Score=177.86 Aligned_cols=153 Identities=19% Similarity=0.220 Sum_probs=111.4
Q ss_pred CEEEEEecCCCChhHHHHHHHcccccc-ccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~-~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||++++....+.. ...++++.+.....+..++. .++||||||+++|..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 379999999999999999999988754 34555555555444555553 788999999999999999999999999999
Q ss_pred EeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+ |...+......++|+++|+||+|+..... ......+. ..+ .++++++||++|.|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~------~~~--~~~~~e~Sa~~~~~v~ 152 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLA------KEY--GVPFMETSAKTGLNVE 152 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHH------HHc--CCeEEEEeCCCCCCHH
Confidence 9999843322 22222222234689999999999864211 11111111 112 2589999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++|+.|....
T Consensus 153 ~l~~~l~~~~ 162 (191)
T cd04112 153 LAFTAVAKEL 162 (191)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 249
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.73 E-value=3e-17 Score=174.83 Aligned_cols=150 Identities=21% Similarity=0.203 Sum_probs=106.3
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++|++++|||||+++|....+.. ..+++..+. ..+.+.+..+.||||||++.|..++..+++.+|++++|+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence 48999999999999999998776542 334333332 345567788999999999999999999999999999999998
Q ss_pred CCCcH-HHHHHHHH----HHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 151 DGVMP-QTREAIAH----AKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 151 ~g~~~-qt~e~i~~----~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+.... ...+.+.. ....+.|+++|+||+|+.+.. ..+....+... .......+++++||++|.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLS----ELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCcc----ccCCCcEEEEEeeccCCCCHHHHHH
Confidence 74221 11222221 222478999999999997543 22222222110 0011224799999999999999999
Q ss_pred HHH
Q psy1758 225 NIS 227 (1527)
Q Consensus 225 ~l~ 227 (1527)
+|.
T Consensus 154 ~l~ 156 (158)
T cd04151 154 WLV 156 (158)
T ss_pred HHh
Confidence 985
No 250
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.73 E-value=5.5e-17 Score=173.58 Aligned_cols=150 Identities=21% Similarity=0.215 Sum_probs=113.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||++++....+...+.++++.+.....+..++. .+.+|||||++.|..++..+++.+|++++|+|
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYD 81 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEE
Confidence 6999999999999999999999887777777777776666666664 67899999999999999999999999999999
Q ss_pred CCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 149 ADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 149 a~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
+++.... .|.+.+......+.|+++|+||+|+..... .+....+. ..++ ++++++||++|.|++++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~------~~~~--~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 82 ISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLA------KEYG--MDFFETSACTNSNIKES 153 (161)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH------HHcC--CEEEEEeCCCCCCHHHH
Confidence 9984322 222222222223689999999999865321 11111111 1222 58999999999999999
Q ss_pred HHHHHH
Q psy1758 223 LENISL 228 (1527)
Q Consensus 223 ~~~l~~ 228 (1527)
|++|..
T Consensus 154 f~~l~~ 159 (161)
T cd04117 154 FTRLTE 159 (161)
T ss_pred HHHHHh
Confidence 999963
No 251
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.73 E-value=5.3e-17 Score=177.12 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=111.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++++|||||+.++....+...+.|++..+.. ..+..++. .+.+|||+|++.|..++..+++.+|++++|
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilv 83 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 83 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEE
Confidence 468999999999999999999999887776666654443 34455554 688999999999999999999999999999
Q ss_pred EeCCCCCcHH-----HHHHHHHHHHcCCCEEEEEEcccCCcchhH----------HHHHHHhhhcccccccCCCCcEEEe
Q psy1758 147 VAADDGVMPQ-----TREAIAHAKISGVPLIVAINKIDKLDINLD----------RIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 147 vda~~g~~~q-----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~----------~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
+|+++....+ |.+.+... ..+.|+++|+||+|+.+.... .+..+. .......+ +..+|+++
T Consensus 84 yDit~~~Sf~~~~~~w~~~i~~~-~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~--~~~~a~~~-~~~~~~E~ 159 (182)
T cd04172 84 FDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ--GANMAKQI-GAATYIEC 159 (182)
T ss_pred EECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHH--HHHHHHHc-CCCEEEEC
Confidence 9999854333 22222222 246899999999998542100 000000 00011111 22489999
Q ss_pred eccCCCC-hhHHHHHHHHH
Q psy1758 212 SAKTGVG-INKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~g-I~eL~~~l~~~ 229 (1527)
||++|.| |+++|+.+...
T Consensus 160 SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 160 SALQSENSVRDIFHVATLA 178 (182)
T ss_pred CcCCCCCCHHHHHHHHHHH
Confidence 9999998 99999988753
No 252
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.73 E-value=3.2e-17 Score=175.41 Aligned_cols=150 Identities=22% Similarity=0.284 Sum_probs=107.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||++++.+..+.....++++ +.....+..++. .+.+|||||+++|..++..+++.+|++++|+|
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 799999999999999999998887655555443 333334444443 67899999999999999999999999999999
Q ss_pred CCCCCcHH----HHHHHHH-HHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 149 ADDGVMPQ----TREAIAH-AKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 149 a~~g~~~q----t~e~i~~-~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+++....+ |.+.+.. ....+.|+++|+||+|+...... .....+. ..+ ..+++++||++|.|+++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA------RQW--GCPFLETSAKERVNVDE 152 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH------HHc--CCEEEEeecCCCCCHHH
Confidence 99843221 2222211 12246899999999998653211 1111111 111 25899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.|..+
T Consensus 153 l~~~l~~~ 160 (164)
T smart00173 153 AFYDLVRE 160 (164)
T ss_pred HHHHHHHH
Confidence 99999754
No 253
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.73 E-value=4.7e-17 Score=177.59 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=110.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
+..+|+++|..++|||||++++....+. ...|++..+. ..+...+..+.+|||||++.|..++..+++.+|++|+|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4478999999999999999999877664 3445555444 345667789999999999999999999999999999999
Q ss_pred eCCCCCc-HHHHHHHHHHH----HcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVM-PQTREAIAHAK----ISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~-~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++... ....+.+.... ..++|++|++||+|+.+.... +....+ .........+.++++||++|+||++
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l----~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh----CccccCCCceEEEeccCCCCCCHHH
Confidence 9998432 22222332221 246899999999999764321 212111 1111001223577999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|++|...
T Consensus 169 ~~~~l~~~ 176 (181)
T PLN00223 169 GLDWLSNN 176 (181)
T ss_pred HHHHHHHH
Confidence 99999744
No 254
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.73 E-value=5.1e-17 Score=177.72 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=110.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEe---CCeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT---NHGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~---~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
...+|+++|++|+|||||++++....+... .++++.+.....+.. .+..+.+|||||++.|..++..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 357899999999999999999988776533 444444444444432 3458999999999999999999999999999
Q ss_pred EEEeCCCCCcHHH-H----HHHHHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQT-R----EAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt-~----e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+. . +........+.|+++|+||+|+.... .+.. ..+....... ....++++++||++|.|
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~SA~~~~g 157 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEV-EKLLALHELS--ASTPWHVQPACAIIGEG 157 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHH-HHHhCccccC--CCCceEEEEeecccCCC
Confidence 9999998422111 1 12222234578999999999986431 2222 2211111100 01125789999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
+++++++|....
T Consensus 158 i~~l~~~l~~~l 169 (183)
T cd04152 158 LQEGLEKLYEMI 169 (183)
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
No 255
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.73 E-value=3.1e-17 Score=175.26 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=107.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++.+..+.....++++ +.....+..++. .+.+|||||+++|..++..+++.+|++++|+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998876554444443 322333445554 6889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHH-HHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMP----QTREAIAH-AKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~-~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+++.... +|.+.+.. ....+.|+++++||+|+....... ....+. ... .++++++||++|.|++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~~i~ 153 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA------RKL--KIPYIETSAKDRLNVD 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH------HHc--CCcEEEeeCCCCCCHH
Confidence 99984322 22222222 223478999999999986532111 111111 111 2589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.|...
T Consensus 154 ~l~~~l~~~ 162 (164)
T cd04145 154 KAFHDLVRV 162 (164)
T ss_pred HHHHHHHHh
Confidence 999999643
No 256
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.73 E-value=5.5e-17 Score=182.47 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=115.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
....+|+++|++|+|||||++++....+...+.+++..++....+..++ ..+.+|||||++.|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4567999999999999999999998888766666665555555554443 47889999999999999999999999999
Q ss_pred EEEeCCCCCcHHHHHHH-HHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 145 LVVAADDGVMPQTREAI-AHAK--ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 145 lVvda~~g~~~qt~e~i-~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|||+++....+....| ..+. ..++|+++|+||+|+...........+. .. ..++++++||++|.||++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~------~~--~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH------RK--KNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHH------Hh--cCCEEEEcCCCCCCCHHH
Confidence 99999985443332222 2221 3478999999999986422111000111 11 235899999999999999
Q ss_pred HHHHHHHHH
Q psy1758 222 LLENISLQA 230 (1527)
Q Consensus 222 L~~~l~~~~ 230 (1527)
+|++|+...
T Consensus 163 ~f~~l~~~~ 171 (219)
T PLN03071 163 PFLYLARKL 171 (219)
T ss_pred HHHHHHHHH
Confidence 999998543
No 257
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=5.8e-17 Score=176.36 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=110.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++++|||||++++....+...+.+++..+.. ..+..++. .+.+|||||++.|..++..+++.+|++|+|+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 57999999999999999999999887776676655543 34555554 6789999999999999999999999999999
Q ss_pred eCCCCCcHH-----HHHHHHHHHHcCCCEEEEEEcccCCcchhH----------HHHHHHhhhcccccccCCCCcEEEee
Q psy1758 148 AADDGVMPQ-----TREAIAHAKISGVPLIVAINKIDKLDINLD----------RIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 148 da~~g~~~q-----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~----------~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
|.++...-+ |...+... ..+.|+++|+||+|+.+.... .+..+ +.......+ +..+++++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~-~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~--e~~~~a~~~-~~~~~~E~S 156 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF-CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYE--QGCAIAKQL-GAEIYLECS 156 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH-CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHH--HHHHHHHHh-CCCEEEECc
Confidence 999854333 22222221 247899999999998542100 00000 000011111 223799999
Q ss_pred ccCCCC-hhHHHHHHHHH
Q psy1758 213 AKTGVG-INKLLENISLQ 229 (1527)
Q Consensus 213 Aktg~g-I~eL~~~l~~~ 229 (1527)
|++|+| |+++|+.++..
T Consensus 157 A~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 157 AFTSEKSVRDIFHVATMA 174 (178)
T ss_pred cCcCCcCHHHHHHHHHHH
Confidence 999995 99999998763
No 258
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=1.1e-16 Score=198.97 Aligned_cols=161 Identities=28% Similarity=0.420 Sum_probs=128.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----------hhHHHHH-H
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----------EAFTAMR-A 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----------e~f~~~~-~ 134 (1527)
...++|+++|++|+|||||+++|.+.. ...++.+|+|++.....+.+++..+.+|||||+ +.|..++ .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 457899999999999999999999766 567888999999988888888899999999994 3444333 3
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
++++.+|++|+|+|++++...++...+..+...+.|+++|+||+|+.+... ......+.... .....+|++++||
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l----~~~~~~~i~~~SA 326 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRL----PFLDYAPIVFISA 326 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhc----ccccCCCEEEEeC
Confidence 577899999999999999999999999988888999999999999974321 12222222111 1223479999999
Q ss_pred cCCCChhHHHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQAE 231 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~~~ 231 (1527)
++|.|++++++.+....+
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999876543
No 259
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.73 E-value=1.2e-16 Score=179.26 Aligned_cols=153 Identities=17% Similarity=0.070 Sum_probs=114.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC---eEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH---GSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~---~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||+++|.+..+...+.++++.++....+..++ ..+.||||||++.|..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 3799999999999999999999988888888888887766666643 4788999999999999999999999999999
Q ss_pred EeCCCCCcHH----HHHHHHHHH---HcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 147 VAADDGVMPQ----TREAIAHAK---ISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 147 vda~~g~~~q----t~e~i~~~~---~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+++....+ |...+.... ..++|+++|+||+|+.+.... .....+. ..+ ..+++++||++|.
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~------~~~--~~~~~~iSAktg~ 152 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA------QAN--GMESCLVSAKTGD 152 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH------HHc--CCEEEEEECCCCC
Confidence 9999843222 222232221 124679999999999642111 1111111 112 2479999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++|+.|....
T Consensus 153 gv~~lf~~l~~~l 165 (215)
T cd04109 153 RVNLLFQQLAAEL 165 (215)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998553
No 260
>KOG0464|consensus
Probab=99.73 E-value=4.8e-18 Score=190.96 Aligned_cols=249 Identities=25% Similarity=0.325 Sum_probs=192.1
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
-.+|.|+.|.++||||...++..-.. ......|||+.....+++|.+++++++|||||.+|.
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 34799999999999999998753211 233456999999999999999999999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhh---------------
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISE--------------- 195 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~--------------- 195 (1527)
-...+.++..|+++.|+|++.|+.+||...|+++.+.++|-++++||||+..++.+...+.+.+.
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~ea 196 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIGEA 196 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999998765432221111000
Q ss_pred --------------cc--------------------------------------------------ccccc---------
Q psy1758 196 --------------QV--------------------------------------------------IPEEY--------- 202 (1527)
Q Consensus 196 --------------~~--------------------------------------------------~~~~~--------- 202 (1527)
.. +.+++
T Consensus 197 k~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a 276 (753)
T KOG0464|consen 197 KGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDA 276 (753)
T ss_pred ccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCH
Confidence 00 00000
Q ss_pred -------------CCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCC----------CCCCceEEEEEeecCCCceE
Q psy1758 203 -------------GGASPFISISAKTGVGINKLLENISLQAEILELKAPV----------TTPAKGVIIESRLDKGKGPV 259 (1527)
Q Consensus 203 -------------~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~----------~~p~~~~v~~~~~~~~~G~v 259 (1527)
...+|+.+.||.++.||..|++++.-. ++.|. .....++.+++-.++.+|++
T Consensus 277 ~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmy-----lpspeernyeflqwykddlcalafkvlhdkqrg~l 351 (753)
T KOG0464|consen 277 EELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMY-----LPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPL 351 (753)
T ss_pred HHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhc-----cCChhhcchHHHhhhhhhHHHHhhhhhcccccCce
Confidence 125689999999999999999988522 11111 12345667778889999999
Q ss_pred EEEEeeccEEEeccEEEe--cceeeeEeEeecc---CCceeeecCCCcceEecCCCCCCCCCCeEEEeC
Q psy1758 260 ATVLIQSGTLRCSDIVVA--GASYGRIRSMLNE---NGKNILEAGPSIPVEIQGLTKVPFSGEELFVIL 323 (1527)
Q Consensus 260 ~~~~v~~G~l~~gd~vv~--g~~~~kVr~i~~~---~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~ 323 (1527)
++.++++|+++..-.+.. |.+..++..++.. ....+.+..+|......|++.. ..||.+..-+
T Consensus 352 ~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~t-atgdtivask 419 (753)
T KOG0464|consen 352 SFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHT-ATGDTIVASK 419 (753)
T ss_pred eEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceee-ccCCeEEecc
Confidence 999999999999998864 6777777766543 3345777888888888898875 7899876433
No 261
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.72 E-value=5.1e-17 Score=174.45 Aligned_cols=153 Identities=21% Similarity=0.214 Sum_probs=106.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEE-EEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGA-YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~-~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
.+|+++|++|+|||||++++.+..+...+.+++...... .........+.+|||||+++|..++..+++.+|++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 579999999999999999999988765555544322211 1222233478899999999999999999999999999999
Q ss_pred CCCCCcHH----HHHHHHHHHH---cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 149 ADDGVMPQ----TREAIAHAKI---SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 149 a~~g~~~q----t~e~i~~~~~---~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+++....+ +.+.+..... .++|+++|+||+|+............ .....+ .++++++||++|.|+++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~----~~~~~~--~~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGA----ACATEW--NCAFMETSAKTNHNVQE 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHH----HHHHHh--CCcEEEeecCCCCCHHH
Confidence 99854332 2222332221 46899999999999652111000000 001112 25799999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|++|..
T Consensus 156 ~f~~l~~ 162 (165)
T cd04140 156 LFQELLN 162 (165)
T ss_pred HHHHHHh
Confidence 9999964
No 262
>KOG0466|consensus
Probab=99.72 E-value=1e-17 Score=182.89 Aligned_cols=245 Identities=25% Similarity=0.291 Sum_probs=181.6
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe----------------
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---------------- 982 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---------------- 982 (1527)
.....||+-+||+-|||||++.++..- - ++ .-.-|-||.|||...++.-..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv---~--------Tv--rFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s 101 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGV---H--------TV--RFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS 101 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccc---e--------EE--EehhhhhcceeEEeccccceEEecCCCCCCCcchhhc
Confidence 345579999999999999999998532 1 11 123355677777665543221
Q ss_pred ----------------c-----CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-CChhHHHHHHHHHHcCCcc
Q psy1758 983 ----------------N-----GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGFKP 1040 (1527)
Q Consensus 983 ----------------~-----~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-~~~qt~~~~~~~~~~glp~ 1040 (1527)
. -+.+.++|+|||.-+...|..+....|+++|++.+++. ++|||-+|+....-+.++.
T Consensus 102 ~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 102 FGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred cCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhce
Confidence 0 14688999999999999999999999999999999986 8999999999988888888
Q ss_pred EEE-EeccCCCCCC-hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCC
Q psy1758 1041 IVV-VNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNS 1118 (1527)
Q Consensus 1041 Ivv-iNKiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~ 1118 (1527)
|++ -||+|+...+ ..+..+++.... .....-..|++++||.-++ +++.+.++|++.+|.|..|.
T Consensus 182 iiilQNKiDli~e~~A~eq~e~I~kFi----~~t~ae~aPiiPisAQlky----------NId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 182 IIILQNKIDLIKESQALEQHEQIQKFI----QGTVAEGAPIIPISAQLKY----------NIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred EEEEechhhhhhHHHHHHHHHHHHHHH----hccccCCCceeeehhhhcc----------ChHHHHHHHHhcCCCCcccc
Confidence 665 5999996542 122233333222 1222235699999999998 99999999999999999999
Q ss_pred CCCceeEEEeee--------ccccCceEEEEEeecCccccCCEEEEecCC-----CCC----cCcceeeeEEEeecCcee
Q psy1758 1119 NNPLQLQIISLE--------YSSYLGKIGIGRILSGRIKSLQDVVIMNGP-----DDK----PNKAKINQIRVFKGLDRV 1181 (1527)
Q Consensus 1119 ~~p~~~~V~~~~--------~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~-----~g~----~~~~kV~~i~~~~g~~~~ 1181 (1527)
..|.++.|...+ .++..|-++-|.+..|.|+.||.+.+-|.- +|. +.-.+|.++| .++.
T Consensus 248 ~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~----AE~n 323 (466)
T KOG0466|consen 248 TSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLF----AEQN 323 (466)
T ss_pred CCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHH----hhhc
Confidence 999999887644 445678899999999999999999886431 121 0112444444 2456
Q ss_pred EeeeeecCCEEEE
Q psy1758 1182 LVNEALSGDIVLI 1194 (1527)
Q Consensus 1182 ~v~~a~AGdIvai 1194 (1527)
+++.|.+|-.+.+
T Consensus 324 ~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 324 DLQFAVPGGLIGV 336 (466)
T ss_pred cceeecCCceeee
Confidence 7889999998876
No 263
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.72 E-value=6e-17 Score=171.38 Aligned_cols=146 Identities=23% Similarity=0.357 Sum_probs=116.2
Q ss_pred EEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH--------HHHhhccccCEE
Q psy1758 73 TIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA--------MRARGAKVTDIV 143 (1527)
Q Consensus 73 ~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~--------~~~~~~~~aD~~ 143 (1527)
+++|++|+|||||+++|.+... ..+..+++|++.......+.+..+.+|||||+..+.. .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999998763 4456678888888888888889999999999887543 444667889999
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 144 VLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 144 IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
++|+|+.++......+.+..+...+.|+++|+||+|+.+.... ...+. .. +..+++++||++|.|+++++
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~-------~~-~~~~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--AAEFY-------SL-GFGEPIPISAEHGRGIGDLL 150 (157)
T ss_pred EEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--HHHHH-------hc-CCCCeEEEecccCCCHHHHH
Confidence 9999999877777777777777788999999999999764332 11111 11 12368999999999999999
Q ss_pred HHHHH
Q psy1758 224 ENISL 228 (1527)
Q Consensus 224 ~~l~~ 228 (1527)
+++..
T Consensus 151 ~~l~~ 155 (157)
T cd01894 151 DAILE 155 (157)
T ss_pred HHHHh
Confidence 99864
No 264
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=1e-16 Score=184.73 Aligned_cols=116 Identities=31% Similarity=0.468 Sum_probs=99.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc----------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChh
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV----------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHE 127 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~----------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e 127 (1527)
.+|+++||+|+|||||+++|...... .....+++.......+.+++.+++|||||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 57999999999999999999753211 11123677778888899999999999999999
Q ss_pred hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh
Q psy1758 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185 (1527)
Q Consensus 128 ~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~ 185 (1527)
+|...+..+++.+|++|+|+|+++++..++..++..+...++|+++++||+|+..++.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDP 140 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCH
Confidence 9999899999999999999999999999998889888888999999999999876554
No 265
>PTZ00369 Ras-like protein; Provisional
Probab=99.72 E-value=6e-17 Score=178.09 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=109.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||++++....+.....+++...+ ...+..++. .+.||||||+++|..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 357899999999999999999999887655555444333 233344443 67899999999999999999999999999
Q ss_pred EEeCCCCCcHH----HHHHHHHH-HHcCCCEEEEEEcccCCcchhHHH--HHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQ----TREAIAHA-KISGVPLIVAINKIDKLDINLDRI--KQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~q----t~e~i~~~-~~~~vpiIvviNKiDl~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++....+ |.+.+... ...++|+++|+||+|+.+...... ..... ..+ ..+++++||++|.|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~------~~~--~~~~~e~Sak~~~g 154 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA------KSF--GIPFLETSAKQRVN 154 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH------HHh--CCEEEEeeCCCCCC
Confidence 99999853222 22222211 224789999999999864321111 11111 111 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
|+++|++|+...
T Consensus 155 i~~~~~~l~~~l 166 (189)
T PTZ00369 155 VDEAFYELVREI 166 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
No 266
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.72 E-value=5.1e-17 Score=178.59 Aligned_cols=159 Identities=18% Similarity=0.198 Sum_probs=112.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+.++|+++|++|+|||||++++.+..+. ...+ |.......+.+++..+.+|||||++.|...+..+++.+|++++|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~--T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVP--TLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCC--ccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 46789999999999999999999887653 2222 33333455667788999999999999999888999999999999
Q ss_pred EeCCCCCc-HHHHHHHHHH----HHcCCCEEEEEEcccCCcc-hhHHHHHHHhhhccc-------ccccCCCCcEEEeec
Q psy1758 147 VAADDGVM-PQTREAIAHA----KISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVI-------PEEYGGASPFISISA 213 (1527)
Q Consensus 147 vda~~g~~-~qt~e~i~~~----~~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~-------~~~~~~~~~v~~iSA 213 (1527)
+|+++... ....+.+..+ ...+.|+++++||+|+... ...+....+...... .+.....++++++||
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T cd00879 94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSV 173 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEe
Confidence 99987421 1122222222 2356899999999999653 222222222211110 011223357999999
Q ss_pred cCCCChhHHHHHHHH
Q psy1758 214 KTGVGINKLLENISL 228 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~ 228 (1527)
++|+|++++|++|..
T Consensus 174 ~~~~gv~e~~~~l~~ 188 (190)
T cd00879 174 VKRQGYGEAFRWLSQ 188 (190)
T ss_pred cCCCChHHHHHHHHh
Confidence 999999999999964
No 267
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.72 E-value=1.4e-16 Score=171.73 Aligned_cols=153 Identities=21% Similarity=0.220 Sum_probs=112.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||++++....+.....++++.+.....+..++. .+.||||||+++|..++..+++.+|++++|
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLT 84 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEE
Confidence 368999999999999999999998887666666666665555666554 678899999999999999999999999999
Q ss_pred EeCCCCCcHH----HHHHHHHHH----HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 147 VAADDGVMPQ----TREAIAHAK----ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 147 vda~~g~~~q----t~e~i~~~~----~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+++....+ |...+.... ..++|+++|+||+|+..... ......+.. .+ +..+++++||++|.
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~-~~~~~~e~Sa~~~~ 157 (170)
T cd04116 85 FAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR------EN-GDYPYFETSAKDAT 157 (170)
T ss_pred EECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH------HC-CCCeEEEEECCCCC
Confidence 9999854322 222222111 24689999999999863211 111111111 11 22479999999999
Q ss_pred ChhHHHHHHHH
Q psy1758 218 GINKLLENISL 228 (1527)
Q Consensus 218 gI~eL~~~l~~ 228 (1527)
|+.++|+.++.
T Consensus 158 ~v~~~~~~~~~ 168 (170)
T cd04116 158 NVAAAFEEAVR 168 (170)
T ss_pred CHHHHHHHHHh
Confidence 99999999864
No 268
>KOG0087|consensus
Probab=99.72 E-value=1.2e-17 Score=176.23 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=123.7
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
......+|+++|++++|||-|+.+++...|.....++|...+....+..+++ +.+||||+|||+|......+++.|.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 3345678999999999999999999999999999999999999988888887 67899999999999999999999999
Q ss_pred EEEEEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcch--hHHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 143 VVLVVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 143 ~IlVvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+++|||.+..... .|...++.-...++++++|+||+||.+.. +.+....+.+ .....++++||..+
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae--------~~~l~f~EtSAl~~ 161 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAE--------KEGLFFLETSALDA 161 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHH--------hcCceEEEeccccc
Confidence 9999999875433 33333333334688999999999996511 1111111111 11247999999999
Q ss_pred CChhHHHHHHHHH
Q psy1758 217 VGINKLLENISLQ 229 (1527)
Q Consensus 217 ~gI~eL~~~l~~~ 229 (1527)
.|+++.|+.+...
T Consensus 162 tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 162 TNVEKAFERVLTE 174 (222)
T ss_pred ccHHHHHHHHHHH
Confidence 9999999888743
No 269
>KOG0079|consensus
Probab=99.72 E-value=2.4e-17 Score=162.48 Aligned_cols=156 Identities=20% Similarity=0.171 Sum_probs=121.2
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+.+|+|++++|||||+.+++...|..++.-+|..|+....+..+|. ++.||||+|+|.|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 34789999999999999999999999999988999999988888775 7889999999999999999999999999999
Q ss_pred eCCCCCcHHHHH-HHHHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 148 AADDGVMPQTRE-AIAHAK--ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 148 da~~g~~~qt~e-~i~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
|++++....... ++..++ ...+|-++|+||.|.++...... ........+....+|++|||...|++..|.
T Consensus 89 DVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t------~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDT------EDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeeh------HHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 999976543322 222222 23578999999999876321100 000011112346899999999999999999
Q ss_pred HHHHHHH
Q psy1758 225 NISLQAE 231 (1527)
Q Consensus 225 ~l~~~~~ 231 (1527)
.|..+..
T Consensus 163 cit~qvl 169 (198)
T KOG0079|consen 163 CITKQVL 169 (198)
T ss_pred HHHHHHH
Confidence 9986643
No 270
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=1.2e-16 Score=179.89 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=112.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|+++||||||+.+|....|...+.+++..+... .+..++. .+.||||||++.|..++..+++.+|++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 45789999999999999999999998877777776655432 3555554 68899999999999999999999999999
Q ss_pred EEeCCCCCcHH-----HHHHHHHHHHcCCCEEEEEEcccCCcchh----------HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 146 VVAADDGVMPQ-----TREAIAHAKISGVPLIVAINKIDKLDINL----------DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 146 Vvda~~g~~~q-----t~e~i~~~~~~~vpiIvviNKiDl~~~~~----------~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
|||+++....+ |...+... ..+.|+|+|+||+|+..... ..+..+ +...+...++ ..+|++
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~-~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~--e~~~~a~~~~-~~~~~E 166 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDY-CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYE--QGCALAKQLG-AEVYLE 166 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccchhhhhccccCCcCCHH--HHHHHHHHcC-CCEEEE
Confidence 99999854332 22222221 24689999999999854110 000000 0011111222 226999
Q ss_pred eeccCCC-ChhHHHHHHHHHH
Q psy1758 211 ISAKTGV-GINKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~-gI~eL~~~l~~~~ 230 (1527)
+||++|. ||+++|+.++...
T Consensus 167 tSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHH
Confidence 9999998 8999999997543
No 271
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.72 E-value=3.3e-17 Score=180.20 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=111.3
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||+++|....+...+.+++..+... .+..++ ..+.||||||++.|..++..+++.+|++|+|+|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 69999999999999999999988876666655544432 233344 478999999999999999999999999999999
Q ss_pred CCCCCcHHHHH--HHHHHH--HcCCCEEEEEEcccCCcchhHHHH-HHH------hhhcccccccCCCCcEEEeeccCCC
Q psy1758 149 ADDGVMPQTRE--AIAHAK--ISGVPLIVAINKIDKLDINLDRIK-QDL------ISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 149 a~~g~~~qt~e--~i~~~~--~~~vpiIvviNKiDl~~~~~~~~~-~~l------~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+++....+..+ ++..+. ..+.|+++|+||+|+......... ... ...........+.++++++||++|.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 99854333221 222222 247899999999999764321110 000 0000000111233689999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++|+++....
T Consensus 161 ~v~e~f~~l~~~~ 173 (189)
T cd04134 161 GVNEAFTEAARVA 173 (189)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998554
No 272
>COG1159 Era GTPase [General function prediction only]
Probab=99.72 E-value=3.7e-17 Score=182.91 Aligned_cols=161 Identities=29% Similarity=0.343 Sum_probs=122.7
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC----
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD---- 997 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d---- 997 (1527)
.--|||+|.||+|||||+|+|+++.-. ...+...+|...-.+-+..+++++.++||||...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Kis---------------IvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~ 70 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKIS---------------IVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHA 70 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceE---------------eecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchH
Confidence 346999999999999999999987322 2233344555555566677889999999999433
Q ss_pred ----chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 ----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 ----f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
....+..++..+|.+++||||.+++.+..+++++.+...+.|+|+++||+|+.... ..+..+.+.+.......
T Consensus 71 l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f~- 147 (298)
T COG1159 71 LGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPFK- 147 (298)
T ss_pred HHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCcc-
Confidence 34566677899999999999999999999999999988778999999999986543 21233333222222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.++++||++|. |++.|++.+.+++|.-
T Consensus 148 ----~ivpiSA~~g~----------n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 148 ----EIVPISALKGD----------NVDTLLEIIKEYLPEG 174 (298)
T ss_pred ----eEEEeeccccC----------CHHHHHHHHHHhCCCC
Confidence 58999999998 9999999999999863
No 273
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.72 E-value=8.7e-17 Score=177.78 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=109.5
Q ss_pred EecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC
Q psy1758 75 MGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG 152 (1527)
Q Consensus 75 vG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g 152 (1527)
+|++++|||||+.++....+...+.+++..+.....+..++ ..+.||||||+++|..++..+++.+|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998887666666665566555555554 4788999999999999999999999999999999996
Q ss_pred CcHHHHHHH-HHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 153 VMPQTREAI-AHAKI--SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 153 ~~~qt~e~i-~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
...+....| ..+.. .++|+++|+||+|+...........+. . ...++++++||++|.||+++|++|+..
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~------~--~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFH------R--KKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHH------H--HcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 544332222 22322 578999999999985422111001111 1 123689999999999999999999855
Q ss_pred H
Q psy1758 230 A 230 (1527)
Q Consensus 230 ~ 230 (1527)
.
T Consensus 153 i 153 (200)
T smart00176 153 L 153 (200)
T ss_pred H
Confidence 3
No 274
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.72 E-value=1.1e-17 Score=156.18 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=75.3
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||++++|++|++|+|+|+++|++|||++.+++..+ ++++|++.+|+++++||+++|+++|+|+|+|++.|+||+|++
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG-DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC-CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999999864 789999999999999999999999999999999999999975
No 275
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.72 E-value=8e-18 Score=159.74 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=76.9
Q ss_pred EeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeec
Q psy1758 1315 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF 1394 (1527)
Q Consensus 1315 llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~ 1394 (1527)
+||||++++|.+|++|+|.||++|++|||++.+++..+ ++++|+|.+|+++++||+++|+++|+|+|+|+++|+||+|+
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~ 79 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG-GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEV 79 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC-CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceEC
Confidence 58999999999999999999999999999999999754 68999999999999999999999999999999999999999
Q ss_pred c
Q psy1758 1395 Y 1395 (1527)
Q Consensus 1395 ~ 1395 (1527)
+
T Consensus 80 ~ 80 (85)
T smart00838 80 P 80 (85)
T ss_pred C
Confidence 7
No 276
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.72 E-value=7.5e-17 Score=180.59 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=108.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
.+|+++|++|+|||||+++|....+.. ..+++..++ ....+....+.||||||++.|..++..+++.+|++|+|||+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~--~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAF--YLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEE--EEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 379999999999999999999988753 344444433 22334556799999999999999999999999999999999
Q ss_pred CCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh-----------------HHH----HHHHhhhcc----ccc
Q psy1758 150 DDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL-----------------DRI----KQDLISEQV----IPE 200 (1527)
Q Consensus 150 ~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~-----------------~~~----~~~l~~~~~----~~~ 200 (1527)
++....+.. ..|..+. ..++|+|+|+||+|+.+... ..+ ...+..... ..+
T Consensus 78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~ 157 (220)
T cd04126 78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDE 157 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccc
Confidence 984332222 2222222 34689999999999965110 000 011111100 000
Q ss_pred ccC--CCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 201 EYG--GASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 201 ~~~--~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
+.. ..++|+++||++|.||+++|+.++...
T Consensus 158 ~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 158 DLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred cccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 110 125899999999999999999998543
No 277
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.72 E-value=1.5e-16 Score=169.85 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=115.2
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++.+..+.....++++.+.....+.+++. .+.+|||||++.|..++...++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 37999999999999999999998887777777777777667777664 7889999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHH-HHH---HHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTREAI-AHA---KISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~e~i-~~~---~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+....| ..+ ...++|+++|+||+|+..... .+....+. ... .++++++||++|.|+++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~------~~~--~~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA------EEH--GLPFFETSAKTNTNVEE 152 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH------HHc--CCeEEEEeCCCCCCHHH
Confidence 99984433322222 222 224789999999999865221 11111111 112 25799999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+++.|...
T Consensus 153 l~~~i~~~ 160 (164)
T smart00175 153 AFEELARE 160 (164)
T ss_pred HHHHHHHH
Confidence 99999754
No 278
>KOG1144|consensus
Probab=99.72 E-value=1.2e-17 Score=199.72 Aligned_cols=226 Identities=23% Similarity=0.217 Sum_probs=160.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe------------------cC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------NG 984 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------~~ 984 (1527)
+-+||+||+|.|||-|++.+-...-.... .-|||-....+.|.. +-
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqege----------------aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kv 539 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGE----------------AGGITQQIGATYFPAENIREKTKELKKDAKKRLKV 539 (1064)
T ss_pred ceEEEeecccccchHHHHHhhcccccccc----------------ccceeeeccccccchHHHHHHHHHHHhhhhhhcCC
Confidence 46899999999999999999653111111 122332222222221 11
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC-------CCChh--
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-------NARPE-- 1055 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~-------~a~~~-- 1055 (1527)
=-+.+||||||..|...-.|+.+.||.+|||||..+|+.+||.+.+++++..+.|+||.+||+|+. ++...
T Consensus 540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~ 619 (1064)
T KOG1144|consen 540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEA 619 (1064)
T ss_pred CeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHH
Confidence 247899999999999999999999999999999999999999999999999999999999999984 22211
Q ss_pred ------hhHHHHHHHHhhh-------c--c------cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1056 ------WVVDATFDLFDKL-------C--A------TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1056 ------~v~~~~~~~~~~l-------~--~------~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+.+++...+..+ + + .+..--+.++++||.+|. ||.+|+-.|+++....
T Consensus 620 lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe----------GipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 620 LKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE----------GIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC----------CcHHHHHHHHHHHHHH
Confidence 2233333322211 1 0 001112568999999998 9999999888765322
Q ss_pred C---CCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEee
Q psy1758 1115 K---DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK 1176 (1527)
Q Consensus 1115 ~---~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~ 1176 (1527)
. -..-..+++.|..+-.-++.|.-.=.-+.+|.|+.||+|.+++. +| +....|..|.+.+
T Consensus 690 m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~-~G-pIvTtIRaLLtP~ 752 (1064)
T KOG1144|consen 690 MVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGL-QG-PIVTTIRALLTPQ 752 (1064)
T ss_pred HHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCC-CC-chhHHHHHhcCCc
Confidence 1 11234678888888888999988888889999999999999977 45 3445566665543
No 279
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.72 E-value=6.5e-17 Score=174.49 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=107.5
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++|++++|||||+++|....+. .+.+++..+. ..+...+..+.+|||||++.|..++..+++.+|++++|+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~--~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNV--ETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeE--EEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 4899999999999999999987654 2444443333 346677889999999999999999999999999999999998
Q ss_pred CCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcc-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 151 DGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 151 ~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+.. .....+.+..+. ..+.|+++|+||+|+... +.++....+ ..... ......+++++||++|.||+++|+
T Consensus 78 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~Sa~~g~gv~~~f~ 154 (169)
T cd04158 78 HRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL-SLHKL--CCGRSWYIQGCDARSGMGLYEGLD 154 (169)
T ss_pred cHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh-CCccc--cCCCcEEEEeCcCCCCCCHHHHHH
Confidence 842 122222222222 235799999999999653 222222211 11100 011234688999999999999999
Q ss_pred HHHHH
Q psy1758 225 NISLQ 229 (1527)
Q Consensus 225 ~l~~~ 229 (1527)
+|...
T Consensus 155 ~l~~~ 159 (169)
T cd04158 155 WLSRQ 159 (169)
T ss_pred HHHHH
Confidence 99743
No 280
>KOG0080|consensus
Probab=99.72 E-value=1.2e-17 Score=167.01 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=118.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
-..+|.++|.+|+|||||+-++....|......+|..|+....+..++. ++.+|||+|||+|+.++..+++.|.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 3478999999999999999999999998877778889998888877765 78899999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHHH----H-HHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 146 VVAADDGVMPQTREAIA----H-AKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i~----~-~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|||++........+.|. . +...++-.++|+||+|..........+-+. +.. ...+-|+++||++.+|++
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~k----fAr--~h~~LFiE~SAkt~~~V~ 163 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLK----FAR--KHRCLFIECSAKTRENVQ 163 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHH----HHH--hhCcEEEEcchhhhccHH
Confidence 99999854332223332 1 223355678999999975421111111111 111 123579999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
..|+.+++.
T Consensus 164 ~~FeelveK 172 (209)
T KOG0080|consen 164 CCFEELVEK 172 (209)
T ss_pred HHHHHHHHH
Confidence 999999754
No 281
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.72 E-value=1.3e-17 Score=155.66 Aligned_cols=78 Identities=29% Similarity=0.494 Sum_probs=75.0
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||++++|.+|++|+|+||++|++|||++.+++..+ ++++|++.+|+++++||+++|+++|+|+|+|+++|+||+|++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE-DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC-CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999999764 789999999999999999999999999999999999999974
No 282
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.72 E-value=8.6e-17 Score=189.83 Aligned_cols=262 Identities=23% Similarity=0.253 Sum_probs=181.1
Q ss_pred EEEEEEEEEEeCCe-E----EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccc----------cccccChhH
Q psy1758 806 KIYKITIIDYTIPY-L----TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLT----------LDKCLNIDT 870 (1527)
Q Consensus 806 ~i~~~~~~~~~~~~-~----~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~----------~~~a~~l~~ 870 (1527)
.|.+.-++.|..|+ | .+|++|-.|..+-..+-+.-.++| + |--.=|.|+ |.+|=-+.|
T Consensus 60 ~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~G--a-----R~AepGEFs~RAFLNgK~DLtqAEai~d 132 (454)
T COG0486 60 IIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKLG--A-----RLAEPGEFSKRAFLNGKLDLTQAEAIAD 132 (454)
T ss_pred EeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHcC--C-----eecCCCcchHHHHhcCCccHHHHHHHHH
Confidence 34455556677773 3 699999999999998888888887 3 334455554 333333334
Q ss_pred HHhhhh-----------------------hhhccccCcccccccccceeeecccccceeccC-cccc----------ccc
Q psy1758 871 IIKYSE-----------------------YERISSLIPIDILLSSFGIIYLSDLLSKRFLHG-QNLF----------LSD 916 (1527)
Q Consensus 871 l~~~~~-----------------------~~~~~~L~pie~~L~~lP~i~l~d~~~~~i~nG-~~i~----------lsq 916 (1527)
|..... ...+..+.-+|..+ +||..++++.....+... +.+. -..
T Consensus 133 LI~A~te~a~r~A~~~l~G~ls~~i~~lr~~li~~~a~vEa~I-Dfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g 211 (454)
T COG0486 133 LIDAKTEQAARIALRQLQGALSQLINELREALLELLAQVEANI-DFPEEDIEELVLEKIREKLEELIAELDELLATAKQG 211 (454)
T ss_pred HHhCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHheEeC-CCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 422110 00112233445455 788775544432222111 0000 012
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 996 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~ 996 (1527)
.-..+..+++|+|.||+|||||+|+|++. |...+...+|+|.+.-...+..+|+.+.|+||+|.+
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~---------------d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR 276 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGR---------------DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR 276 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcC---------------CceEecCCCCCccceEEEEEEECCEEEEEEecCCcc
Confidence 23456779999999999999999999977 556667789999999999999999999999999998
Q ss_pred CchHHHHHH--------HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 997 DFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 997 df~~ev~~~--------l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
+-...+++. +..||.+++|+|++++...+....+. +...+.|+++|+||+|+......... +.
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~ 347 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE--------KL 347 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh--------hc
Confidence 877776653 79999999999999986666665555 55668899999999999765421111 01
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
....|++.+||++|. |++.|.++|.+.+..-
T Consensus 348 -----~~~~~~i~iSa~t~~----------Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 348 -----ANGDAIISISAKTGE----------GLDALREAIKQLFGKG 378 (454)
T ss_pred -----cCCCceEEEEecCcc----------CHHHHHHHHHHHHhhc
Confidence 113378999999998 9999999998877644
No 283
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.72 E-value=2.1e-16 Score=170.23 Aligned_cols=154 Identities=23% Similarity=0.288 Sum_probs=112.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.+|||||++.|..++..+++.+|++|+|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 37999999999999999999998876666666666666556666665 5678999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHHH-----HHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 148 AADDGVMPQTREAIA-----HAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 148 da~~g~~~qt~e~i~-----~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
|+++....+....|. .+. ..++|+++|+||+|+..... .+....+.. . .+..+++++||++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~-~~~~~~~~~Sa~~~~ 153 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ------S-NGNIPYFETSAKEAI 153 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH------H-cCCceEEEEECCCCC
Confidence 999854322222221 111 12789999999999974211 111111111 1 123589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++++++....
T Consensus 154 gv~~l~~~i~~~~ 166 (172)
T cd01862 154 NVEQAFETIARKA 166 (172)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997543
No 284
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.72 E-value=1.4e-16 Score=188.16 Aligned_cols=168 Identities=25% Similarity=0.298 Sum_probs=133.8
Q ss_pred hhhhhhcccCcccccccCCCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCCh---
Q psy1758 51 SFLLNEYNKNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH--- 126 (1527)
Q Consensus 51 ~~~~~~l~~~~~~~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~--- 126 (1527)
..+...+.........+.+.+|+|+|.||+|||||+|+|.+.+ .+++..+|+|+|+....+..+|.++.++||+|-
T Consensus 199 ~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet 278 (454)
T COG0486 199 AELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET 278 (454)
T ss_pred HHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC
Confidence 3344455566777888999999999999999999999999877 589999999999999999999999999999992
Q ss_pred ----hhHHHHHH-hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccc
Q psy1758 127 ----EAFTAMRA-RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEE 201 (1527)
Q Consensus 127 ----e~f~~~~~-~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~ 201 (1527)
|+..-.+. ..+..||++++|+|++.....+....+. +...+.|+++|.||+|+......... .
T Consensus 279 ~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----------~ 346 (454)
T COG0486 279 DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE-----------K 346 (454)
T ss_pred ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh-----------h
Confidence 33333333 4568999999999999976666666666 45667899999999999874321110 1
Q ss_pred cCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 202 YGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 202 ~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
+....+++.+||++|+|++.|.+.|....
T Consensus 347 ~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 347 LANGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred ccCCCceEEEEecCccCHHHHHHHHHHHH
Confidence 12234799999999999999999997554
No 285
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.72 E-value=9.9e-17 Score=176.51 Aligned_cols=152 Identities=24% Similarity=0.280 Sum_probs=107.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|.+|+|||||+++|....+.....++++... ...+..++. .+.||||||+++|..++..+++.+|++++|+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 489999999999999999998887655555443332 223445554 58899999999999999999999999999999
Q ss_pred CCCCCcHH----HHHHHHHHHH---cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 149 ADDGVMPQ----TREAIAHAKI---SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 149 a~~g~~~q----t~e~i~~~~~---~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+++..... |...+..... .++|+++|+||+|+.......... . .. ....+ .++++++||++|.|+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~-~-~~--~~~~~--~~~~~e~SAk~~~~v~~ 153 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE-G-AA--LARRL--GCEFIEASAKTNVNVER 153 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH-H-HH--HHHHh--CCEEEEecCCCCCCHHH
Confidence 98854322 2222322222 468999999999986422111100 0 00 11112 24899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.+...
T Consensus 154 l~~~l~~~ 161 (190)
T cd04144 154 AFYTLVRA 161 (190)
T ss_pred HHHHHHHH
Confidence 99999854
No 286
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.71 E-value=1.2e-16 Score=174.63 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=109.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
+..+|+++|++|+|||||++++....+.. ..+++..+. ..+...+..+.+|||||++.|..++..+++.+|++|+|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 45789999999999999999998766643 344444333 345567789999999999999999999999999999999
Q ss_pred eCCCCC-cHHHHHHHHHH-H---HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGV-MPQTREAIAHA-K---ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~-~~qt~e~i~~~-~---~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.. .....+.+... . ..++|++||+||+|+.+.. ..++...+. ........++++++||++|.|+++
T Consensus 93 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~----~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 93 DSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLG----LHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred eCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhC----CCcccCCcEEEEeeeCCCCCCHHH
Confidence 998732 12222233322 1 2368999999999986532 222222221 111111234678999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|++|..
T Consensus 169 ~~~~l~~ 175 (182)
T PTZ00133 169 GLDWLSA 175 (182)
T ss_pred HHHHHHH
Confidence 9999974
No 287
>PRK04213 GTP-binding protein; Provisional
Probab=99.71 E-value=1.7e-16 Score=176.12 Aligned_cols=156 Identities=26% Similarity=0.393 Sum_probs=111.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCC-----------hhhHHHHHHhh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG-----------HEAFTAMRARG 136 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG-----------~e~f~~~~~~~ 136 (1527)
+.++|+++|++|+|||||+++|.+..+..+..+|+|++..... +. .+++||||| ++.|..++..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEe--ec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 4578999999999999999999998887777888888765433 33 689999999 57777665544
Q ss_pred c----cccCEEEEEEeCCCCC-----------cHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccc
Q psy1758 137 A----KVTDIVVLVVAADDGV-----------MPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEE 201 (1527)
Q Consensus 137 ~----~~aD~~IlVvda~~g~-----------~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~ 201 (1527)
+ ..+|++++|+|+++.. .+.+.+++..+...++|+++|+||+|+.+.. .+...++.........
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~ 162 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPP 162 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhcCCcc
Confidence 3 4578999999987521 2234556666667799999999999997543 1122222221111001
Q ss_pred cCC-CCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 202 YGG-ASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 202 ~~~-~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
+.. ..+++++||++| |+++++++|...
T Consensus 163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 163 WRQWQDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred ccccCCcEEEEecccC-CHHHHHHHHHHh
Confidence 110 137899999999 999999999754
No 288
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.71 E-value=5.8e-17 Score=171.94 Aligned_cols=146 Identities=22% Similarity=0.279 Sum_probs=112.5
Q ss_pred EEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH------HHHhhc--cccCEEEE
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA------MRARGA--KVTDIVVL 145 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~------~~~~~~--~~aD~~Il 145 (1527)
++|++|+|||||++++.+..+..++.+++|.+.....+.+++..+.||||||++.|.. ++..++ ..+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999998877778889999988888888888999999999987653 344455 48999999
Q ss_pred EEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 146 VVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
|+|+++. .+....+..+...++|+++|+||+|+.+..... ....+.. .+ ..+++++||++|.|++++++
T Consensus 81 v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 81 VVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSE------LL--GVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHH------hh--CCCeEEEEccCCCCHHHHHH
Confidence 9999873 334445555666789999999999997532111 1111111 11 25899999999999999999
Q ss_pred HHHHH
Q psy1758 225 NISLQ 229 (1527)
Q Consensus 225 ~l~~~ 229 (1527)
.+...
T Consensus 151 ~l~~~ 155 (158)
T cd01879 151 AIAEL 155 (158)
T ss_pred HHHHH
Confidence 98654
No 289
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.71 E-value=1.3e-16 Score=171.78 Aligned_cols=153 Identities=20% Similarity=0.178 Sum_probs=109.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++|.+|+|||||+++|.+. +.....+++.. ....+...+..+++|||||++.|..++..+++.+|++|+|+|++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~--~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGF--TPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccc--eEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 4899999999999999999876 43333333332 23456677889999999999999999999999999999999999
Q ss_pred CCCcH-HHHHHHHHHHH----cCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCC------CC
Q psy1758 151 DGVMP-QTREAIAHAKI----SGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTG------VG 218 (1527)
Q Consensus 151 ~g~~~-qt~e~i~~~~~----~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg------~g 218 (1527)
+.... .....+..+.. .++|+++|+||+|+.+.. ..+....+.... .....+..++++++||++| .|
T Consensus 78 ~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~-~~~~~~~~~~~~~~Sa~~g~~~~~~~g 156 (167)
T cd04161 78 DDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEK-LVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred chhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccc-ccCCCCceEEEEEeEceeCCCCccccC
Confidence 84322 22333333322 478999999999997654 333333222111 1112233468999999998 89
Q ss_pred hhHHHHHHH
Q psy1758 219 INKLLENIS 227 (1527)
Q Consensus 219 I~eL~~~l~ 227 (1527)
+++.|+||.
T Consensus 157 ~~~~~~wl~ 165 (167)
T cd04161 157 IVEGLRWLL 165 (167)
T ss_pred HHHHHHHHh
Confidence 999999985
No 290
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=2e-16 Score=170.09 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=115.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||++++....+.....++++.+.....+.+.+. .+.+|||||++.|...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 3478999999999999999999987776666666776776666777764 57889999999999999999999999999
Q ss_pred EEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|++++... .|...+......++|+++|+||+|+.+... ......+.. . ...+++++||++|.|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~------~--~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSD------A--QDMYYLETSAKESDNV 157 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH------H--cCCeEEEeeCCCCCCH
Confidence 9999875432 333333444445789999999999864221 111111111 1 1257999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++|+.+..
T Consensus 158 ~~l~~~i~~ 166 (169)
T cd04114 158 EKLFLDLAC 166 (169)
T ss_pred HHHHHHHHH
Confidence 999999974
No 291
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.71 E-value=1e-16 Score=171.56 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=109.1
Q ss_pred CEEEEEecCCCChhHHHHHHHcc--ccccccCCceeEEEEEEEEEeC---CeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKT--NVVFSEAGGITQHIGAYNVVTN---HGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~--~~~~~~~~giT~~~~~~~~~~~---~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+|+++|.+++|||||+++|... .+...+.+++..++....+... ...+.+|||||++.|..++...+..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 37999999999999999999865 4555666666566554444433 247899999999999999999999999999
Q ss_pred EEEeCCCCCcHHHHH-HHHHHHH--cCCCEEEEEEcccCCcchh-HHHH-HHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 145 LVVAADDGVMPQTRE-AIAHAKI--SGVPLIVAINKIDKLDINL-DRIK-QDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 145 lVvda~~g~~~qt~e-~i~~~~~--~~vpiIvviNKiDl~~~~~-~~~~-~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
+|+|+++.......+ ++..+.. .++|+++|+||+|+.+... .... ..+. ..+ .++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~gi 152 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFA------QAN--QLKFFKTSALRGVGY 152 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHH------HHc--CCeEEEEeCCCCCCh
Confidence 999999843322222 2222222 4689999999999865321 1111 1111 111 257999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|+.+...
T Consensus 153 ~~l~~~l~~~ 162 (164)
T cd04101 153 EEPFESLARA 162 (164)
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 292
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.71 E-value=2.7e-16 Score=169.68 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=114.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHH-HHHHhhccccCEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFT-AMRARGAKVTDIVV 144 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~-~~~~~~~~~aD~~I 144 (1527)
|..+|+++|++|+|||||++++....+.....++++.+.....+.+++ ..+.+|||||+++|. .++..+++.+|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 346899999999999999999998887666666666666666666666 478899999999997 56788889999999
Q ss_pred EEEeCCCCCcHHHHHHHH-HHH----HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccC--
Q psy1758 145 LVVAADDGVMPQTREAIA-HAK----ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKT-- 215 (1527)
Q Consensus 145 lVvda~~g~~~qt~e~i~-~~~----~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt-- 215 (1527)
+|+|+++....+....|. .+. ..++|+++|+||+|+..... ......+. ..+ .++++++||++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~e~Sa~~~~ 152 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA------DAH--SMPLFETSAKDPS 152 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH------HHc--CCcEEEEeccCCc
Confidence 999999865444443332 222 24689999999999864321 11111121 111 26899999999
Q ss_pred -CCChhHHHHHHHHH
Q psy1758 216 -GVGINKLLENISLQ 229 (1527)
Q Consensus 216 -g~gI~eL~~~l~~~ 229 (1527)
+.|++++|..++..
T Consensus 153 ~~~~i~~~f~~l~~~ 167 (170)
T cd04115 153 ENDHVEAIFMTLAHK 167 (170)
T ss_pred CCCCHHHHHHHHHHH
Confidence 88999999988643
No 293
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=1.8e-16 Score=206.79 Aligned_cols=162 Identities=22% Similarity=0.277 Sum_probs=127.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----------hhHHHHHH-
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----------EAFTAMRA- 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----------e~f~~~~~- 134 (1527)
...++|+++|++|+|||||+++|.+... ..++.+|+|++.....+.+++..+.||||||+ +.|..++.
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 3458999999999999999999998875 56778899999988888889999999999994 44555443
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.+++.+|++++|+|++++...+....+..+...++|+++|+||+|+.+............... ......+++++||+
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l---~~~~~~~ii~iSAk 604 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEF---DRVTWARRVNLSAK 604 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhc---cCCCCCCEEEEECC
Confidence 457899999999999999999998888888888999999999999976332111111111111 11234688999999
Q ss_pred CCCChhHHHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQAE 231 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~~~ 231 (1527)
+|.|+++|++.+.....
T Consensus 605 tg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 605 TGWHTNRLAPAMQEALE 621 (712)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999986544
No 294
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.71 E-value=1.1e-16 Score=173.42 Aligned_cols=152 Identities=23% Similarity=0.214 Sum_probs=108.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
..+|+++|++|+|||||++++....+.. ..++++. ....+.+++..+.+|||||++.|...+..+++.+|++++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGS--NVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCcccc--ceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 4689999999999999999998877643 3333333 334556677899999999999999999999999999999999
Q ss_pred CCCCCcH-HHHHHHHHH-H---HcCCCEEEEEEcccCCcc-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 149 ADDGVMP-QTREAIAHA-K---ISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 149 a~~g~~~-qt~e~i~~~-~---~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
+++.... ...+.+..+ . ..++|+++++||+|+... +.++....+..... . ...++++++||++|.||+++
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~--~--~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSI--R--DHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc--c--CCceEEEecccCCCCCHHHH
Confidence 9984321 112222222 1 246899999999998753 22222222211110 1 12357999999999999999
Q ss_pred HHHHH
Q psy1758 223 LENIS 227 (1527)
Q Consensus 223 ~~~l~ 227 (1527)
|++|.
T Consensus 168 ~~~l~ 172 (174)
T cd04153 168 LDWIA 172 (174)
T ss_pred HHHHh
Confidence 99985
No 295
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.71 E-value=2.4e-16 Score=172.84 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=110.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-C--eEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-H--GSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||+++|....+...+.+++..++... +... + ..+.||||||+++|..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 4799999999999999999999888766666665554332 3333 3 3688999999999999999999999999999
Q ss_pred EeCCCCCcHHHHH-HH-HHHH--HcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQTRE-AI-AHAK--ISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt~e-~i-~~~~--~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+... .| .... ..++|+++|+||+|+....... +...... .....+ +..+++++||++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~--~~~~~~-~~~~~~e~Sa~~~~~v~ 156 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAE--SVAKKQ-GAFAYLECSAKTMENVE 156 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHH--HHHHHc-CCcEEEEccCCCCCCHH
Confidence 9999854332221 12 1222 2478999999999986532100 0000000 011111 12379999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++|+.+....
T Consensus 157 ~~f~~l~~~~ 166 (187)
T cd04132 157 EVFDTAIEEA 166 (187)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 296
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.71 E-value=9.7e-17 Score=173.54 Aligned_cols=157 Identities=19% Similarity=0.214 Sum_probs=109.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++....+...+.+++. +.....+..++. .+.+|||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 3799999999999999999999887655555443 333334555554 5779999999999999999999999999999
Q ss_pred eCCCCCcH-----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHH-HHhh-------hcccccccCCCCcEEEeecc
Q psy1758 148 AADDGVMP-----QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQ-DLIS-------EQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 148 da~~g~~~-----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~-~l~~-------~~~~~~~~~~~~~v~~iSAk 214 (1527)
|+++.... .|.+.+... ..+.|+++|+||+|+.+........ .... ........ +..+++++||+
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~ 157 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI-GAHCYVECSAL 157 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc-CCCEEEEecCC
Confidence 99985332 233333322 4679999999999986532211100 0000 00001111 23479999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|++++|+.++..
T Consensus 158 ~~~gi~~~f~~~~~~ 172 (174)
T cd04135 158 TQKGLKTVFDEAILA 172 (174)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999998753
No 297
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.71 E-value=1.8e-16 Score=175.84 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=114.7
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.++|+++|++|+|||||+++|....+...+.++++.++....+..++. .+.||||||++.|..++..+++.+|++++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 478999999999999999999998887666677766666666666654 688999999999999999999999999999
Q ss_pred EeCCCCCcHHHH-HHHHHHH--HcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 147 VAADDGVMPQTR-EAIAHAK--ISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 147 vda~~g~~~qt~-e~i~~~~--~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+++....+.. .++..+. ....|+++|+||+|+...... .....+. ..+ ..+++++||++|.||++
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFA------GQM--GISLFETSAKENINVEE 157 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHH------HHc--CCEEEEEECCCCcCHHH
Confidence 999984322222 2222222 235899999999998653211 1111111 111 25899999999999999
Q ss_pred HHHHHHHHH
Q psy1758 222 LLENISLQA 230 (1527)
Q Consensus 222 L~~~l~~~~ 230 (1527)
+|++|....
T Consensus 158 lf~~l~~~~ 166 (199)
T cd04110 158 MFNCITELV 166 (199)
T ss_pred HHHHHHHHH
Confidence 999998654
No 298
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.71 E-value=8.3e-17 Score=171.18 Aligned_cols=151 Identities=23% Similarity=0.285 Sum_probs=107.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++|++|+|||||++++.+.... ...+ |.......+.+.+..+.+|||||++.|...+...+..+|++++|+|++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCC--CcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 4899999999999999999988732 2222 222333445566789999999999999999999999999999999999
Q ss_pred CCC-cHHHHHHHHH----HHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 151 DGV-MPQTREAIAH----AKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 151 ~g~-~~qt~e~i~~----~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+.. ..+....+.. ....+.|+++|+||+|+.... .++....+.... .....++++++||++|.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 78 DRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK----ILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh----ccCCcEEEEEeeCCCCCCHHHHHH
Confidence 852 1222222222 223578999999999997643 222222211110 112346899999999999999999
Q ss_pred HHHH
Q psy1758 225 NISL 228 (1527)
Q Consensus 225 ~l~~ 228 (1527)
.|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 8863
No 299
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.71 E-value=1.7e-16 Score=172.07 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=108.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+.++....+...+.+++. +.....+..++. .+.||||||++.|..++..+++.+|++|+|+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 5799999999999999999999888766666543 222233445553 6889999999999999999999999999999
Q ss_pred eCCCCCcHHHH-HHH-HHHH--HcCCCEEEEEEcccCCcchh--HHHHHH----H--hhhcccccccCCCCcEEEeeccC
Q psy1758 148 AADDGVMPQTR-EAI-AHAK--ISGVPLIVAINKIDKLDINL--DRIKQD----L--ISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 148 da~~g~~~qt~-e~i-~~~~--~~~vpiIvviNKiDl~~~~~--~~~~~~----l--~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
|+++....+.. ..| ..+. ..++|+++|+||+|+.+... +..... + .+.......+ +.++++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc-CCcEEEEecccc
Confidence 99984433332 112 2222 24689999999999964211 111000 0 0000011112 235899999999
Q ss_pred CCChhHHHHHHHH
Q psy1758 216 GVGINKLLENISL 228 (1527)
Q Consensus 216 g~gI~eL~~~l~~ 228 (1527)
|.|++++|+.+..
T Consensus 160 ~~~i~~~f~~l~~ 172 (174)
T cd01871 160 QKGLKTVFDEAIR 172 (174)
T ss_pred cCCHHHHHHHHHH
Confidence 9999999998863
No 300
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=2.2e-16 Score=173.32 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=112.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
++|+++|++|+|||||+++|....+...+.++++.+.....+..++. .+.+|||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 47999999999999999999998887656666666665555555554 6789999999999999999999999999999
Q ss_pred eCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++..... |...+......+.|+++|+||+|+.+... ......+.. .. .++++++||++|.|+++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~evSa~~~~~i~~ 152 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCD------SL--NIPFFETSAKQSINVEE 152 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHH------Hc--CCeEEEEeCCCCCCHHH
Confidence 999843222 22222222234578999999999874221 111111111 11 24899999999999999
Q ss_pred HHHHHHHHH
Q psy1758 222 LLENISLQA 230 (1527)
Q Consensus 222 L~~~l~~~~ 230 (1527)
+|+.|....
T Consensus 153 ~f~~l~~~~ 161 (188)
T cd04125 153 AFILLVKLI 161 (188)
T ss_pred HHHHHHHHH
Confidence 999998654
No 301
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.71 E-value=1.2e-16 Score=170.88 Aligned_cols=150 Identities=23% Similarity=0.244 Sum_probs=107.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++..+.+.....+++ .+.....+..++. .+.||||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch-hheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 579999999999999999999888765554433 2333344555554 5778999999999999999999999999999
Q ss_pred eCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+++...-+ ..+++..+. ..++|+++|+||+|+....... ....+ ...+ .++++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~------~~~~--~~~~~~~Sa~~~~~v~ 152 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL------AEEW--GCPFMETSAKSKTMVN 152 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH------HHHh--CCEEEEecCCCCCCHH
Confidence 999843222 122222222 2478999999999985421111 11111 1122 2589999999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
++|+++..
T Consensus 153 ~l~~~l~~ 160 (163)
T cd04176 153 ELFAEIVR 160 (163)
T ss_pred HHHHHHHH
Confidence 99999864
No 302
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.71 E-value=2.8e-16 Score=167.87 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=108.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....+.+........+.+++ ..+.+|||||++.|...+..+++.+|++++|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 5799999999999999999999887654444444444444445554 47889999999999999999999999999999
Q ss_pred eCCCCCcHH-HHHHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQ-TREAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~q-t~e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++...-+ ...++..+.. .++|+++++||+|+..... ......+.. .++ ++++++||++|.|+.+
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------~~~--~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYAD------ENG--LLFFETSAKTGENVNE 153 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHH------HcC--CEEEEEECCCCCCHHH
Confidence 999743221 1222222222 4588999999999874211 111111111 112 5799999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
++++|...
T Consensus 154 l~~~l~~~ 161 (163)
T cd01860 154 LFTEIAKK 161 (163)
T ss_pred HHHHHHHH
Confidence 99999754
No 303
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.71 E-value=1.1e-16 Score=170.51 Aligned_cols=151 Identities=22% Similarity=0.265 Sum_probs=104.5
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
+|+++|++|+|||||+++|....+.. ..+++..+. ..+... ...+.+|||||++.|..++..++..+|++|+|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 48999999999999999999887643 233333332 233333 45899999999999999999999999999999999
Q ss_pred CCCCc-HHHHHHHHHH----HHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 150 DDGVM-PQTREAIAHA----KISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 150 ~~g~~-~qt~e~i~~~----~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
++... ......+... ...+.|+++|+||+|+.... ..++...+. ..... ....++++++||++|.|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~-~~~~~--~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFK-LKKYC--SDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcC-CcccC--CCCcEEEEecccccCCChHHHH
Confidence 98431 1222222221 22578999999999996432 222222111 11111 1123579999999999999999
Q ss_pred HHHH
Q psy1758 224 ENIS 227 (1527)
Q Consensus 224 ~~l~ 227 (1527)
+.|.
T Consensus 155 ~~i~ 158 (160)
T cd04156 155 RKLA 158 (160)
T ss_pred HHHh
Confidence 9885
No 304
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.70 E-value=1.1e-16 Score=172.00 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=109.2
Q ss_pred EEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC
Q psy1758 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 72 V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
|+++|++|+|||||+++|.+..+...+.+++..+ ...+...+.++.+|||||++.|..++..+++.+|++++|+|+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 7999999999999999999887765555554433 34456677799999999999999999999999999999999998
Q ss_pred CCcH-HHHHHHHHHH--HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccC------CCChhH
Q psy1758 152 GVMP-QTREAIAHAK--ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKT------GVGINK 221 (1527)
Q Consensus 152 g~~~-qt~e~i~~~~--~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt------g~gI~e 221 (1527)
.... .....+..+. ..++|+++|+||+|+..... ..+...+. ...... ...++++++||++ ++||++
T Consensus 80 ~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~-~~~~~~--~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 80 SERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELE-LEPIAR--GRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhC-ChhhcC--CCceEEEEeeecCCCChhHHHHHHH
Confidence 4322 2222333332 25799999999999876432 22221111 111111 1235789999988 999999
Q ss_pred HHHHHH
Q psy1758 222 LLENIS 227 (1527)
Q Consensus 222 L~~~l~ 227 (1527)
+|+.++
T Consensus 157 ~~~~~~ 162 (164)
T cd04162 157 LLSQLI 162 (164)
T ss_pred HHHHHh
Confidence 999875
No 305
>PLN03110 Rab GTPase; Provisional
Probab=99.70 E-value=1.1e-16 Score=179.71 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=117.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|++|+|||||+++|.+..+.....++++.++....+..++. .+.||||||++.|..++..+++.+|++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 3468999999999999999999998887777777777776666766664 78899999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH----HHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTRE----AIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~e----~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+... .+......++|+++|+||+|+..... .+....+.. .+ .++++++||++|.|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~------~~--~~~~~e~SA~~g~~v 162 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE------KE--GLSFLETSALEATNV 162 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHH------Hc--CCEEEEEeCCCCCCH
Confidence 99999854433322 22222234789999999999854211 111111111 11 358999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|+.|...
T Consensus 163 ~~lf~~l~~~ 172 (216)
T PLN03110 163 EKAFQTILLE 172 (216)
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 306
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.70 E-value=1.4e-16 Score=171.28 Aligned_cols=151 Identities=25% Similarity=0.277 Sum_probs=106.1
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe-EEEEEeCCChhh-------HHHHHHhhccccCE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEA-------FTAMRARGAKVTDI 142 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~e~-------f~~~~~~~~~~aD~ 142 (1527)
.|+++|++|||||||+++|.+.....+..+++|.+.....+.+++. .+.||||||+.+ +.....+.+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 4899999999999999999987766666677777776666777776 999999999631 22233344567999
Q ss_pred EEEEEeCCCC-CcHHHHH-HHHHHHH-----cCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 143 VVLVVAADDG-VMPQTRE-AIAHAKI-----SGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 143 ~IlVvda~~g-~~~qt~e-~i~~~~~-----~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
+++|+|+++. ...+... +...+.. .+.|+++|+||+|+.+.... ........ .. ...+++++||+
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~------~~-~~~~~~~~Sa~ 154 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK------EL-WGKPVFPISAL 154 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh------hC-CCCCEEEEecC
Confidence 9999999986 2322222 2222222 36899999999998653321 11111111 10 23589999999
Q ss_pred CCCChhHHHHHHHH
Q psy1758 215 TGVGINKLLENISL 228 (1527)
Q Consensus 215 tg~gI~eL~~~l~~ 228 (1527)
++.|++++++++..
T Consensus 155 ~~~gi~~l~~~i~~ 168 (170)
T cd01898 155 TGEGLDELLRKLAE 168 (170)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999999864
No 307
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=3.5e-16 Score=168.01 Aligned_cols=157 Identities=23% Similarity=0.386 Sum_probs=119.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh----------HHHH-HHh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA----------FTAM-RAR 135 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~----------f~~~-~~~ 135 (1527)
++++|+++|++|+|||||+++|.+... .....+++|.+.....+..++..+.+|||||+.. |..+ ...
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 357899999999999999999988764 4566678888877777778888899999999632 3222 234
Q ss_pred hccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEee
Q psy1758 136 GAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 136 ~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
.+..+|++++|+|+.++...+....+..+...+.|+++++||+|+.+.. .+.....+..... .....+++++|
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S 156 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP----FLDYAPIVFIS 156 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc----cccCCceEEEe
Confidence 5678999999999999888777777777777789999999999997642 2222222222111 11236899999
Q ss_pred ccCCCChhHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISL 228 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~ 228 (1527)
|+++.|++++++.+..
T Consensus 157 a~~~~~i~~~~~~l~~ 172 (174)
T cd01895 157 ALTGQGVDKLFDAIDE 172 (174)
T ss_pred ccCCCCHHHHHHHHHH
Confidence 9999999999998853
No 308
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.70 E-value=3.9e-17 Score=171.09 Aligned_cols=146 Identities=26% Similarity=0.415 Sum_probs=107.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH---
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG--- 1000 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~--- 1000 (1527)
+||++|.||+|||||+|+|++.... .-.-+|.|++...+.+.+++..+.|+||||.-++..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~----------------v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK----------------VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE----------------EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce----------------ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc
Confidence 6999999999999999999876311 122379999999999999999999999999654331
Q ss_pred -H-H-HHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCCh-hhhHHHHHHHHhhhcccccc
Q psy1758 1001 -E-V-ERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1001 -e-v-~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~-~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
| + ..++ ...|++++|+||+. ..+...+..++.++|+|+++|+||+|.....- .--.+.+.+ .
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~----------~ 133 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSE----------R 133 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHH----------H
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHH----------H
Confidence 1 1 2233 57999999999987 46677778888899999999999999753221 111223322 2
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHH
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAI 1107 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i 1107 (1527)
+.+|++++||++|. |+++|+++|
T Consensus 134 Lg~pvi~~sa~~~~----------g~~~L~~~I 156 (156)
T PF02421_consen 134 LGVPVIPVSARTGE----------GIDELKDAI 156 (156)
T ss_dssp HTS-EEEEBTTTTB----------THHHHHHHH
T ss_pred hCCCEEEEEeCCCc----------CHHHHHhhC
Confidence 35799999999998 999999875
No 309
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.70 E-value=1.9e-16 Score=174.48 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=110.1
Q ss_pred CEEEEEecCCCChhHHHHHHHcccccc-ccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~-~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||+++|....+.. .+.+++..++....+..++. .+.||||||++.|..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 379999999999999999999988765 34444444444445566665 567999999999999998899999999999
Q ss_pred EeCCCCCcHHH-HHHHHHHHH--cCCCEEEEEEcccCCcchh--HHHH-HHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQT-REAIAHAKI--SGVPLIVAINKIDKLDINL--DRIK-QDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt-~e~i~~~~~--~~vpiIvviNKiDl~~~~~--~~~~-~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+. ..++..+.. .+.|+++|+||+|+..... ..+. .+... ....+ ..+++++||++|.|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~---~~~~~--~~~~~~~Sa~~~~gv~ 155 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD---FADEI--KAQHFETSSKTGQNVD 155 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHH---HHHHc--CCeEEEEeCCCCCCHH
Confidence 99988433222 122233332 3689999999999864321 0100 01100 01111 2579999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
+||+.+....
T Consensus 156 ~l~~~i~~~~ 165 (193)
T cd04118 156 ELFQKVAEDF 165 (193)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 310
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.69 E-value=2.1e-16 Score=174.87 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=107.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhH--------HHHHHhhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAF--------TAMRARGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f--------~~~~~~~~~~ 139 (1527)
.+|+++|.+|+|||||++++.+..+...+.++++.+.....+.+++. .+.||||||++.| ......+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 37999999999999999999998887667777766654445556664 6789999997543 2224456789
Q ss_pred cCEEEEEEeCCCCCcHHHHHH-HHHHH------HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEee
Q psy1758 140 TDIVVLVVAADDGVMPQTREA-IAHAK------ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~-i~~~~------~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
+|++|+|+|+++....+.... +..+. ..++|+++|+||+|+........ ..... ..... ..++++++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~-~~~~~--~~~~~--~~~~~~e~S 155 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPR-HVLSV--LVRKS--WKCGYLECS 155 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccH-HHHHH--HHHHh--cCCcEEEec
Confidence 999999999998543322222 22221 35689999999999965321111 11100 00111 236899999
Q ss_pred ccCCCChhHHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQA 230 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~~ 230 (1527)
|++|.||++||+.++...
T Consensus 156 ak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 156 AKYNWHILLLFKELLISA 173 (198)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998543
No 311
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.69 E-value=2.1e-16 Score=169.97 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=104.9
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEE-EEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIG-AYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~-~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
+|+++|++|+|||||+++|....+... .+.+..+.. ...+...+.++.+|||||++.+...+...++.+|++++|+|+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 799999999999999999999887543 222222211 112222445789999999999888888888999999999999
Q ss_pred CCCCcHHHH-HHH-HHHH--HcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 150 DDGVMPQTR-EAI-AHAK--ISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 150 ~~g~~~qt~-e~i-~~~~--~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
++....+.. +.| ..++ ..+.|+++|+||+|+.+..... ....+.. ....+....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLP---IMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHH---HHHHHhcccEEEEeccccccCHHHHHH
Confidence 985443332 112 2222 2478999999999997643211 1111110 011122223799999999999999999
Q ss_pred HHHHH
Q psy1758 225 NISLQ 229 (1527)
Q Consensus 225 ~l~~~ 229 (1527)
.+...
T Consensus 158 ~~~~~ 162 (166)
T cd01893 158 YAQKA 162 (166)
T ss_pred HHHHH
Confidence 88654
No 312
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.69 E-value=3.1e-16 Score=167.28 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=109.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....+.++.+.....+.+++ ..+.+|||||++.|..+....++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 4799999999999999999998887554555555444444444444 47899999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHH-H----HHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTREAI-A----HAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~e~i-~----~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+....| . .....++|+++|+||+|+....... ....+.. . ..++++++||++|.|+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~------~--~~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR------K--HNMLFIETSAKTRDGVQQ 152 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH------H--cCCEEEEEecCCCCCHHH
Confidence 99874433322222 1 1223578999999999997322111 1111111 1 135899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+++.+..
T Consensus 153 ~~~~~~~ 159 (161)
T cd01863 153 AFEELVE 159 (161)
T ss_pred HHHHHHH
Confidence 9998863
No 313
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.69 E-value=1.2e-16 Score=171.52 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=112.2
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
||+++|++|+|||||+++|+........ . ...+...|+......+.+++..+++|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~--~----------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG--L----------PPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC--C----------cccccCCccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 6899999999999999999865322100 0 001123344445566788899999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++.+|++++|+|+++.- ..+....+..+. ..++|+++++||+|++.... .+++.+.+...........+|
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS---VEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCC---HHHHHHHhccccccccCCceE
Confidence 9999999999999998642 222233333332 24799999999999876432 223333333222112223568
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++++||++|. |+++++++|.+
T Consensus 146 ~~~~Sa~~g~----------gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGT----------GVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCc----------CHHHHHHHHhc
Confidence 9999999998 99999999864
No 314
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=3.2e-16 Score=171.60 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=112.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+.++|+++|.+|+|||||++++.+..+.. ..+ |.......+..++.++.+|||||++.+..++..++..+|++++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQP--TQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCC--ccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 456899999999999999999999876532 222 33334455566788999999999999999999999999999999
Q ss_pred EeCCCCCc-HHHHHHHHHH----HHcCCCEEEEEEcccCCcc-hhHHHHHHHhhhcccc---cccCCCCcEEEeeccCCC
Q psy1758 147 VAADDGVM-PQTREAIAHA----KISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVIP---EEYGGASPFISISAKTGV 217 (1527)
Q Consensus 147 vda~~g~~-~qt~e~i~~~----~~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~~---~~~~~~~~v~~iSAktg~ 217 (1527)
+|+++... ....+.+..+ ...++|+++|+||+|+... +.++....+....... ........++++||++|.
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~ 171 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRM 171 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCC
Confidence 99987421 2222223222 2357899999999998653 3333333332111100 001134579999999999
Q ss_pred ChhHHHHHHHH
Q psy1758 218 GINKLLENISL 228 (1527)
Q Consensus 218 gI~eL~~~l~~ 228 (1527)
|+++++++|..
T Consensus 172 g~~~~~~wl~~ 182 (184)
T smart00178 172 GYGEGFKWLSQ 182 (184)
T ss_pred ChHHHHHHHHh
Confidence 99999999963
No 315
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.69 E-value=3.1e-16 Score=175.76 Aligned_cols=158 Identities=13% Similarity=0.163 Sum_probs=112.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++++|||||+.+|....+...+.|++..++. ..+..++. .+.||||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 57999999999999999999998887777776655443 34455554 6788999999999999999999999999999
Q ss_pred eCCCCCcHHHH-HHHHH-H--HHcCCCEEEEEEcccCCcchhHHHHHHHhh---------hcccccccCCCCcEEEeecc
Q psy1758 148 AADDGVMPQTR-EAIAH-A--KISGVPLIVAINKIDKLDINLDRIKQDLIS---------EQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 148 da~~g~~~qt~-e~i~~-~--~~~~vpiIvviNKiDl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~v~~iSAk 214 (1527)
|+++....+.. ..|.. . ...++|+|||+||+|+..... ....+.. +........+.++|+++||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~--~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLA--TLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchh--hhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 99984322222 22221 1 225789999999999965211 0111100 00001111233589999999
Q ss_pred CCCC-hhHHHHHHHHHH
Q psy1758 215 TGVG-INKLLENISLQA 230 (1527)
Q Consensus 215 tg~g-I~eL~~~l~~~~ 230 (1527)
++.| |+++|+......
T Consensus 159 ~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 159 SSERSVRDVFHVATVAS 175 (222)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 9985 999999987653
No 316
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.69 E-value=2.9e-16 Score=179.23 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=110.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+++|....+...+.+++. +.....+..++ ..+.||||||++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 3699999999999999999999888766555543 44444555555 46889999999999999988899999999999
Q ss_pred eCCCCCcH----HHHHHHHHHH---------HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 148 AADDGVMP----QTREAIAHAK---------ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~---------~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
|+++.... +|.+.+...+ ..++|+|+|+||+|+....... ..++..... . ...++++++||+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~-~~ei~~~~~--~--~~~~~~~evSAk 154 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ-RDEVEQLVG--G--DENCAYFEVSAK 154 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC-HHHHHHHHH--h--cCCCEEEEEeCC
Confidence 99984322 2222222221 1368999999999996421100 111111000 0 113579999999
Q ss_pred CCCChhHHHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQAE 231 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~~~ 231 (1527)
+|.|++++|++|...+.
T Consensus 155 tg~gI~elf~~L~~~~~ 171 (247)
T cd04143 155 KNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999986543
No 317
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.69 E-value=2.9e-16 Score=182.32 Aligned_cols=157 Identities=24% Similarity=0.199 Sum_probs=113.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc-----
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF----- 998 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df----- 998 (1527)
.|+++|++|+|||||+|+|++.... ......++|.....+....++.++.||||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~---------------~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS---------------ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe---------------ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 5899999999999999999876221 11223455554444444556788999999997643
Q ss_pred ---hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 999 ---GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ---~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
...+..++..+|++++|+|++++...+ ..++..+...+.|.++|+||+|+.. .+...+.+..... . .
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~-~------~ 136 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAI-L------E 136 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHh-h------c
Confidence 223456789999999999999875554 5666777778999999999999863 3333333322211 1 1
Q ss_pred CC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1076 DF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1076 ~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
.+ +++++||++|. |++.|++.+.+.+|+.+
T Consensus 137 ~~~~v~~iSA~~g~----------gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 137 DFKDIVPISALTGD----------NTSFLAAFIEVHLPEGP 167 (270)
T ss_pred CCCceEEEecCCCC----------CHHHHHHHHHHhCCCCC
Confidence 22 78999999998 99999999999997643
No 318
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.69 E-value=3.5e-16 Score=165.24 Aligned_cols=150 Identities=21% Similarity=0.270 Sum_probs=110.6
Q ss_pred EEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC
Q psy1758 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 72 V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
|+++|++|+|||||+++|.+..+.....++++.+.. .+..++..+.+|||||++.|..++..+++.+|++++|+|+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC
Confidence 899999999999999999998887766666555443 345666789999999999999999999999999999999987
Q ss_pred CCc-HHHHHHHHHHH----HcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 152 GVM-PQTREAIAHAK----ISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 152 g~~-~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
... .+..+.+..+. ..++|+++|+||+|+.+.... .....+. ........++++++||++|.|+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMN----LKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhC----cccccCCceEEEEEEeccCCChHHHHHH
Confidence 322 22223333322 257899999999998754221 1111111 1111123468999999999999999999
Q ss_pred HH
Q psy1758 226 IS 227 (1527)
Q Consensus 226 l~ 227 (1527)
|.
T Consensus 156 l~ 157 (159)
T cd04159 156 LI 157 (159)
T ss_pred Hh
Confidence 85
No 319
>KOG0093|consensus
Probab=99.69 E-value=1.6e-16 Score=156.70 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=120.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
-.++.|+|+..+||||++.++....|......+..+++....+--... ++++|||+|+|.|+.....++++++++||+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 348999999999999999999999998888888888877766544333 789999999999999999999999999999
Q ss_pred EeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|.++... ..|.-.++.....+.|+|+|+||||+.+...- +.-..+.. ++| ..+|++|||.+.|++
T Consensus 101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~------~LG--fefFEtSaK~NinVk 172 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLAD------QLG--FEFFETSAKENINVK 172 (193)
T ss_pred EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHH------HhC--hHHhhhcccccccHH
Confidence 99998443 33444445555678999999999999763221 11112221 222 379999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++|+.++...
T Consensus 173 ~~Fe~lv~~I 182 (193)
T KOG0093|consen 173 QVFERLVDII 182 (193)
T ss_pred HHHHHHHHHH
Confidence 9999997543
No 320
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.69 E-value=4.3e-17 Score=152.96 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=74.8
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecC-CcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINE-KERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~-~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||++++|.+|++|+|+|+++|++|||++.+++..+ +++++|++.+|+++++||+++|+++|+|+|+|+++|+||+|++
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 899999999999999999999999999999999863 3469999999999999999999999999999999999999973
No 321
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.69 E-value=4.9e-16 Score=165.26 Aligned_cols=151 Identities=21% Similarity=0.206 Sum_probs=111.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+.....++++.......+...+. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 37999999999999999999988876655556655555555555554 6889999999999999999999999999999
Q ss_pred eCCCCCcHHH----HHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|++++...+. .+.+......++|+++|+||+|+..... ......+.. .+ .++++++||++|.|+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~------~~--~~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAK------SV--GAKHFETSAKTGKGIEE 152 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH------Hc--CCEEEEEeCCCCCCHHH
Confidence 9998543222 2223333334689999999999874221 111111111 11 25789999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+++++..
T Consensus 153 ~~~~l~~ 159 (162)
T cd04123 153 LFLSLAK 159 (162)
T ss_pred HHHHHHH
Confidence 9999864
No 322
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.69 E-value=2.3e-16 Score=166.86 Aligned_cols=149 Identities=28% Similarity=0.324 Sum_probs=115.2
Q ss_pred EEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH-----
Q psy1758 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG----- 1000 (1527)
Q Consensus 926 aIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~----- 1000 (1527)
|++|++|+|||||+++|+..... ..+...++|.......+.+.++.+++|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA---------------IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE---------------eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 58999999999999999865211 1122356777777777888899999999999998654
Q ss_pred ---HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1001 ---EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1001 ---ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
.+...++.+|++++|+|+.++...++..+++.+...+.|+++|+||+|+.+++.. ...+..++. .
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~------~~~~~~~~~------~ 133 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE------AAEFYSLGF------G 133 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH------HHHHHhcCC------C
Confidence 5556789999999999999888777777888888889999999999999765322 111212211 1
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+++++||++|. |++.+++.+.+++
T Consensus 134 ~~~~~Sa~~~~----------gv~~l~~~l~~~~ 157 (157)
T cd01894 134 EPIPISAEHGR----------GIGDLLDAILELL 157 (157)
T ss_pred CeEEEecccCC----------CHHHHHHHHHhhC
Confidence 58999999998 9999999998753
No 323
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.69 E-value=3.8e-16 Score=168.92 Aligned_cols=154 Identities=19% Similarity=0.268 Sum_probs=107.7
Q ss_pred EEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 72 V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
|+++|++|+|||||++++....+...+.+++.... ...+..++. .+.+|||||++.|..++...++.+|++|+|+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999888766666554433 234455554 588999999999999999999999999999999
Q ss_pred CCCCcHHHH-H-HHHHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhh----------hcccccccCCCCcEEEeeccC
Q psy1758 150 DDGVMPQTR-E-AIAHAK--ISGVPLIVAINKIDKLDINLDRIKQDLIS----------EQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 150 ~~g~~~qt~-e-~i~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~----------~~~~~~~~~~~~~v~~iSAkt 215 (1527)
++....+.. . ++..+. ..++|+++|+||+|+...... . ..+.. .......+ +..+++++||++
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~ 156 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKST-L-RELSKQKQEPVTYEQGEALAKRI-GAVKYLECSALT 156 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhh-h-hhhhcccCCCccHHHHHHHHHHc-CCcEEEEecCCC
Confidence 984322211 1 122222 247999999999998652110 0 00000 00011112 234799999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.|++++|+.+...
T Consensus 157 ~~~v~~lf~~l~~~ 170 (174)
T smart00174 157 QEGVREVFEEAIRA 170 (174)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999754
No 324
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=3.6e-16 Score=174.88 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=111.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-C--eEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-H--GSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||+++|.+..+.....++++.++....+... + ..+.+|||||++.|..++..+++.+|++++|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 82 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLV 82 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEE
Confidence 689999999999999999999988766666677667666555553 3 3788999999999999999999999999999
Q ss_pred EeCCCCCcH----HHHHHHHHH-HHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 147 VAADDGVMP----QTREAIAHA-KISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 147 vda~~g~~~----qt~e~i~~~-~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
+|+++.... +|...+... ....+|+++++||+|+..... ......+. ..++ ++++++||++|.|+
T Consensus 83 ~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~------~~~~--~~~~e~Sak~g~~v 154 (211)
T cd04111 83 FDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA------KDLG--MKYIETSARTGDNV 154 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH------HHhC--CEEEEEeCCCCCCH
Confidence 999984321 222222111 123467899999999865211 11111111 1222 68999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|+.|...
T Consensus 155 ~e~f~~l~~~ 164 (211)
T cd04111 155 EEAFELLTQE 164 (211)
T ss_pred HHHHHHHHHH
Confidence 9999999854
No 325
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.68 E-value=1.8e-16 Score=195.73 Aligned_cols=150 Identities=27% Similarity=0.343 Sum_probs=119.9
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH--------HH
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM--------RA 134 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~--------~~ 134 (1527)
.....+++|+++|++|+|||||+|+|.+... ..++.+|+|++.....+.+++.++.+|||||++++... ..
T Consensus 210 ~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 210 EILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred HHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 4455678999999999999999999998775 56788999999998889999999999999998654322 23
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
..+..+|++++|+|++++...+..+.|.. ..+.|+++|+||+|+.+..... .....+++++||+
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------------~~~~~~~i~iSAk 353 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE--------------EENGKPVIRISAK 353 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh--------------hccCCceEEEEee
Confidence 46789999999999998776665555544 4578999999999996532111 1112479999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|+++|++.|...
T Consensus 354 tg~GI~~L~~~L~~~ 368 (449)
T PRK05291 354 TGEGIDELREAIKEL 368 (449)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 326
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.68 E-value=1.7e-16 Score=177.65 Aligned_cols=111 Identities=32% Similarity=0.455 Sum_probs=94.6
Q ss_pred EEEEEecCCCChhHHHHHHHccccc----------------cccCCceeEEEEEEEEEeC----------CeEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVV----------------FSEAGGITQHIGAYNVVTN----------HGSITFLDTP 124 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~----------------~~~~~giT~~~~~~~~~~~----------~~~i~~iDTP 124 (1527)
+|+++||++||||||+++|...... .....|+|+......+.+. +..++|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6999999999999999998654311 1223477777665555444 5689999999
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~ 181 (1527)
||++|...+..+++.+|++++|+|+.++...++.+++..+...++|+|+|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 999999999999999999999999999999999999999988899999999999986
No 327
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.68 E-value=3.8e-16 Score=168.16 Aligned_cols=154 Identities=23% Similarity=0.270 Sum_probs=108.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||++++.+..+.....+.+. +.....+.+++. .+.+|||||+++|..++..+++.+|++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 4799999999999999999998887555444333 222334445543 7789999999999999999999999999999
Q ss_pred eCCCCCcHH----HHHHHHH-HHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 148 AADDGVMPQ----TREAIAH-AKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~-~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|+++....+ +.+.+.. ....++|+++++||+|+.......... ... ....++ ..+++++||++|.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~-~~~---~~~~~~-~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSRED-GVS---LSQQWG-NVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHH-HHH---HHHHcC-CceEEEeeCCCCCCHHHH
Confidence 999843222 2222222 223478999999999986532111111 000 111222 368999999999999999
Q ss_pred HHHHHHH
Q psy1758 223 LENISLQ 229 (1527)
Q Consensus 223 ~~~l~~~ 229 (1527)
|+++..+
T Consensus 156 f~~i~~~ 162 (168)
T cd04177 156 FIDLVRQ 162 (168)
T ss_pred HHHHHHH
Confidence 9999754
No 328
>PRK15494 era GTPase Era; Provisional
Probab=99.68 E-value=2.9e-16 Score=187.40 Aligned_cols=160 Identities=24% Similarity=0.240 Sum_probs=119.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch-
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG- 999 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~- 999 (1527)
+..+|+++|++|+|||||+++|++.... ......++|.......+.+++.+++||||||+.+..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~---------------ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~ 115 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS---------------IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG 115 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCcee---------------eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc
Confidence 4468999999999999999999865211 122345666666666778889999999999975432
Q ss_pred -------HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1000 -------GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1000 -------~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.....++..||++|+|+|+.++....+..++..+...+.|+|+|+||+|+.+.. ..++.+.+....
T Consensus 116 ~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~----~~~~~~~l~~~~--- 188 (339)
T PRK15494 116 SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY----LNDIKAFLTENH--- 188 (339)
T ss_pred cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc----HHHHHHHHHhcC---
Confidence 222345789999999999998887777777777777888999999999986532 233333332211
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
...+++++||++|. |+++|++++.+++|..
T Consensus 189 --~~~~i~~iSAktg~----------gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 189 --PDSLLFPISALSGK----------NIDGLLEYITSKAKIS 218 (339)
T ss_pred --CCcEEEEEeccCcc----------CHHHHHHHHHHhCCCC
Confidence 12368999999998 9999999999998753
No 329
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.68 E-value=9.1e-16 Score=161.89 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=111.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
++|+++|++++|||||++++.+..+...+.++.+.+.....+..++ ..+.+|||||++.|.......++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 4799999999999999999999888766666666666666666544 47889999999999999999999999999999
Q ss_pred eCCCCCcHHHH-HHHHHHHH---cCCCEEEEEEcccCCcch--hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTR-EAIAHAKI---SGVPLIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~-e~i~~~~~---~~vpiIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+.. .++..+.. .+.|+++++||+|+.... ..+....+.. . ..++++++||++|.|+++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~--~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAK------E--NGLLFFETSAKTGENVEE 152 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHH------H--cCCeEEEEecCCCCCHHH
Confidence 99983322222 22223333 358999999999996211 1111111111 1 236899999999999999
Q ss_pred HHHHHH
Q psy1758 222 LLENIS 227 (1527)
Q Consensus 222 L~~~l~ 227 (1527)
++++|.
T Consensus 153 ~~~~i~ 158 (159)
T cd00154 153 LFQSLA 158 (159)
T ss_pred HHHHHh
Confidence 999874
No 330
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.68 E-value=4.3e-16 Score=173.41 Aligned_cols=148 Identities=27% Similarity=0.358 Sum_probs=108.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe-EEEEEeCCCh---------hhHHHHHHhhcc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGH---------EAFTAMRARGAK 138 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~---------e~f~~~~~~~~~ 138 (1527)
-++|+++|++|||||||++++.+..+.....++.|.+.....+.+.+. .+.||||||+ +.|.... ..+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~ 119 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVA 119 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHh
Confidence 479999999999999999999998765555566677666666666665 8999999997 2233322 3467
Q ss_pred ccCEEEEEEeCCCCCcHHHH----HHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 139 VTDIVVLVVAADDGVMPQTR----EAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~----e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.+|++++|+|+++....... +.+..+...+.|+++|+||+|+....... .. ......+++++||+
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~--------~~~~~~~~~~~Sa~ 188 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ER--------LEAGRPDAVFISAK 188 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HH--------hhcCCCceEEEEcC
Confidence 89999999999986544332 33333333468999999999997643211 00 11234589999999
Q ss_pred CCCChhHHHHHHHH
Q psy1758 215 TGVGINKLLENISL 228 (1527)
Q Consensus 215 tg~gI~eL~~~l~~ 228 (1527)
+|.|+++++++|..
T Consensus 189 ~~~gi~~l~~~L~~ 202 (204)
T cd01878 189 TGEGLDELLEAIEE 202 (204)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998853
No 331
>PLN03118 Rab family protein; Provisional
Probab=99.68 E-value=9.3e-16 Score=171.72 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=110.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|++|+|||||+++|....+. ...++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999987763 3344555555545555554 478899999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH-HHHH-HH----HcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 146 VVAADDGVMPQTRE-AIAH-AK----ISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 146 Vvda~~g~~~qt~e-~i~~-~~----~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
|+|+++....+... .|.. +. ..+.|+++|+||+|+....... ....+.. .. .++++++||++|.
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~------~~--~~~~~e~SAk~~~ 163 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK------EH--GCLFLECSAKTRE 163 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH------Hc--CCEEEEEeCCCCC
Confidence 99999843333222 2221 11 2357899999999986532111 1111111 11 2579999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++|+.|....
T Consensus 164 ~v~~l~~~l~~~~ 176 (211)
T PLN03118 164 NVEQCFEELALKI 176 (211)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
No 332
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.68 E-value=5.2e-16 Score=185.40 Aligned_cols=147 Identities=28% Similarity=0.381 Sum_probs=112.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEe-CCeEEEEEeCCCh---------hhHHHHHHhhcc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFLDTPGH---------EAFTAMRARGAK 138 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~-~~~~i~~iDTPG~---------e~f~~~~~~~~~ 138 (1527)
.++|+++|++|+|||||+|+|++..+.....+++|.+.....+.+ ++.++.||||||. +.|.... ..+.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~ 267 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVR 267 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHH
Confidence 489999999999999999999998877777889999998888888 4679999999996 4555443 3578
Q ss_pred ccCEEEEEEeCCCCCcHHHH----HHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 139 VTDIVVLVVAADDGVMPQTR----EAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~----e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.||++++|+|+++....+.. +.+..+...+.|+++|+||+|+.+.. .. .... ....+++++||+
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~--~v-~~~~---------~~~~~~i~iSAk 335 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP--RI-ERLE---------EGYPEAVFVSAK 335 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH--hH-HHHH---------hCCCCEEEEEcc
Confidence 99999999999986544332 33333333478999999999996521 11 1110 012368999999
Q ss_pred CCCChhHHHHHHHH
Q psy1758 215 TGVGINKLLENISL 228 (1527)
Q Consensus 215 tg~gI~eL~~~l~~ 228 (1527)
+|.|+++|++.|..
T Consensus 336 tg~GI~eL~~~I~~ 349 (351)
T TIGR03156 336 TGEGLDLLLEAIAE 349 (351)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998853
No 333
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=3.2e-16 Score=173.63 Aligned_cols=156 Identities=24% Similarity=0.276 Sum_probs=108.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||+++|....+...+.+++ .+.....+.+++ ..+.||||||++.|..++..++..+|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-EEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch-hhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 48999999999999999999887754433332 334444555556 478899999999999999999999999999999
Q ss_pred CCCCCcHHHH----HHHHH-HHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 149 ADDGVMPQTR----EAIAH-AKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 149 a~~g~~~qt~----e~i~~-~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
+++....+.. ..+.. ....++|+++|+||+|+............... ....+ ..+++++||++|.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~--~~~~~--~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALST--VELDW--NCGFVETSAKDNENVLEVF 155 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHH--HHhhc--CCcEEEecCCCCCCHHHHH
Confidence 9984332222 11211 12257999999999998652110001111100 00111 2579999999999999999
Q ss_pred HHHHHHHH
Q psy1758 224 ENISLQAE 231 (1527)
Q Consensus 224 ~~l~~~~~ 231 (1527)
+++.....
T Consensus 156 ~~l~~~~~ 163 (198)
T cd04147 156 KELLRQAN 163 (198)
T ss_pred HHHHHHhh
Confidence 99986543
No 334
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.68 E-value=4.6e-16 Score=168.06 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=108.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||++++.+..+.. ..+ |.......+.+.+..+.+|||||+..|...+..+++.+|++++|
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~--t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITP--TQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCC--CCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 346889999999999999999999875522 112 22222345556788999999999999999999999999999999
Q ss_pred EeCCCCCc-HHHHHHH----HHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVM-PQTREAI----AHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~-~qt~e~i----~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++... ......+ ......++|+++++||+|+.... .......+. .........+++++||++|+|++
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~----~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALN----LHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcC----CcccCCCeEEEEEeECCCCCCHH
Confidence 99987321 1222222 22234579999999999986533 222222211 11111122468899999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
+++++|+.
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999863
No 335
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.68 E-value=7.1e-16 Score=164.54 Aligned_cols=151 Identities=24% Similarity=0.269 Sum_probs=107.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||++++....+.....+++. +........++ ..+.+|||||++.|..++..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 3799999999999999999998877654444433 32233334444 36889999999999999999999999999999
Q ss_pred eCCCCCc----HHHHHHHHHH-HHcCCCEEEEEEcccCCcch--hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVM----PQTREAIAHA-KISGVPLIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~----~qt~e~i~~~-~~~~vpiIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+++... ..+...+... ...++|+++|+||+|+.... ......... .+++ .+++++||++|.|++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~~gi~ 151 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA------RQWG--VPYVETSAKTRQNVE 151 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH------HHhC--CeEEEeeCCCCCCHH
Confidence 9987321 2233333222 23579999999999996521 111111111 1122 589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.+..+
T Consensus 152 ~l~~~l~~~ 160 (164)
T cd04139 152 KAFYDLVRE 160 (164)
T ss_pred HHHHHHHHH
Confidence 999999754
No 336
>KOG0086|consensus
Probab=99.68 E-value=2.1e-16 Score=156.38 Aligned_cols=154 Identities=17% Similarity=0.118 Sum_probs=117.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
.-.++.++|+.|.|||+|+.++....+......++.++++...++.+++ ++++|||+|||+|++....+++.|-+++|
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 3467999999999999999999999987777778888888888887776 78999999999999999999999999999
Q ss_pred EEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 146 VVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 146 Vvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+|+++.... .|..-++.+...++-+|+++||.|+........ +....+..+ ....+.++||+||+|+++
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtf---lEAs~FaqE---nel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTF---LEASRFAQE---NELMFLETSALTGENVEE 161 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhH---HHHHhhhcc---cceeeeeecccccccHHH
Confidence 9999984432 233333444445666899999999965322111 111111111 123688999999999999
Q ss_pred HHHHHH
Q psy1758 222 LLENIS 227 (1527)
Q Consensus 222 L~~~l~ 227 (1527)
.|-...
T Consensus 162 aFl~c~ 167 (214)
T KOG0086|consen 162 AFLKCA 167 (214)
T ss_pred HHHHHH
Confidence 886554
No 337
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.68 E-value=5.3e-16 Score=167.95 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=107.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+...+.+++.... ...+..++. .+.+|||||++.|..++..++..+|++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5799999999999999999999887665555444332 223444444 6789999999999998888899999999999
Q ss_pred eCCCCCcHHHH-HHH-HHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhhh----------cccccccCCCCcEEEeec
Q psy1758 148 AADDGVMPQTR-EAI-AHAK--ISGVPLIVAINKIDKLDINLDRIKQDLISE----------QVIPEEYGGASPFISISA 213 (1527)
Q Consensus 148 da~~g~~~qt~-e~i-~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~----------~~~~~~~~~~~~v~~iSA 213 (1527)
|+++....+.. +.| ..+. ..++|+++|+||+|+.+..... ..+... ...... .+..+++++||
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~i~~~~~~~v~~~~~~~~~~~-~~~~~~~~~Sa 157 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTR--RELAKMKQEPVKPEEGRDMANK-IGAFGYMECSA 157 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhh--hhhhhccCCCccHHHHHHHHHH-cCCcEEEEecc
Confidence 99974322111 111 1222 2478999999999986532110 001000 000011 12358999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
++|.|++++|+.+...
T Consensus 158 ~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 158 KTKEGVREVFEMATRA 173 (175)
T ss_pred ccCcCHHHHHHHHHHH
Confidence 9999999999999754
No 338
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.67 E-value=8.1e-16 Score=167.61 Aligned_cols=148 Identities=21% Similarity=0.322 Sum_probs=109.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----------hhHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----------EAFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----------e~f~~~~~ 134 (1527)
.+.++|+++|++|+|||||+++|.+..+ ..+..++.|++...+.. + ..+.||||||+ +.|..+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 5678999999999999999999998763 44556778887765544 2 36999999994 44555555
Q ss_pred hhcc---ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEE
Q psy1758 135 RGAK---VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 135 ~~~~---~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.+++ .+|++++|+|++++...+..+.+..+...+.|+++++||+|+.... .......+.... ...+...++|+
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l---~~~~~~~~v~~ 169 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKAL---KKDADDPSVQL 169 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHH---hhccCCCceEE
Confidence 4543 4689999999999888888888888888899999999999997532 222222222211 11233458999
Q ss_pred eeccCCCChh
Q psy1758 211 ISAKTGVGIN 220 (1527)
Q Consensus 211 iSAktg~gI~ 220 (1527)
+||++|+|++
T Consensus 170 ~Sa~~g~gi~ 179 (179)
T TIGR03598 170 FSSLKKTGID 179 (179)
T ss_pred EECCCCCCCC
Confidence 9999999984
No 339
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.67 E-value=5.7e-16 Score=168.68 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=110.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++....+.....+++.... ...+..++ ..+.+|||||+++|...+..++..+|++++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 4799999999999999999998887655555443222 33344444 36789999999999999999999999999999
Q ss_pred eCCCCCcHHHHHH-HHHH----HHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMPQTREA-IAHA----KISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~qt~e~-i~~~----~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+++....+.... +..+ ...+.|+++|+||+|+....... ....+. ..++ .+++++||++|.|+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~~gv~ 152 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA------ESWG--AAFLESSARENENVE 152 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH------HHcC--CeEEEEeCCCCCCHH
Confidence 9998543333222 2222 23467999999999986421110 111111 1222 589999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1758 221 KLLENISLQAEIL 233 (1527)
Q Consensus 221 eL~~~l~~~~~~~ 233 (1527)
++++++.......
T Consensus 153 ~l~~~l~~~~~~~ 165 (180)
T cd04137 153 EAFELLIEEIEKV 165 (180)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998765443
No 340
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.67 E-value=7.6e-16 Score=162.79 Aligned_cols=144 Identities=26% Similarity=0.348 Sum_probs=112.9
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH--------HHHhhcccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA--------MRARGAKVT 140 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~--------~~~~~~~~a 140 (1527)
.+|+++|++|+|||||++++.+... .....+++|.+.....+.+.+.++++|||||+.++.. .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5799999999999999999998775 3466778888888777888888999999999755432 233566889
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|++++|+|+++.........+.. ..+.|+++|+||+|+...... .......+++++||+++.|++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-------------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-------------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-------------ccccCCCceEEEECCCCCCHH
Confidence 99999999998666555554443 567999999999999763221 111224689999999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
+++++|..
T Consensus 147 ~l~~~l~~ 154 (157)
T cd04164 147 ELKEALLE 154 (157)
T ss_pred HHHHHHHH
Confidence 99999864
No 341
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.67 E-value=8e-16 Score=166.56 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=108.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+.++....+...+.++ +.+.....+..++. .+.+|||||++.|..++..+++.+|++|+|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 47999999999999999999888776655543 34444444555554 6788999999999999999999999999999
Q ss_pred eCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhH----------HHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 148 AADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLD----------RIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 148 da~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~----------~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
|+++....+.. .++..+.. .++|+++++||+|+...... .+..+. ........ +..+++++||
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~--~~~~a~~~-~~~~~~e~Sa 156 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSR--AKALAEKI-GACEYIECSA 156 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHH--HHHHHHHh-CCCeEEEEeC
Confidence 99985433222 12223322 46899999999998642210 000000 00011111 2348999999
Q ss_pred cCCCChhHHHHHHHH
Q psy1758 214 KTGVGINKLLENISL 228 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~ 228 (1527)
++|.|++++|+.++.
T Consensus 157 ~~~~~v~~lf~~~~~ 171 (173)
T cd04130 157 LTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999998864
No 342
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.67 E-value=9.2e-17 Score=150.00 Aligned_cols=78 Identities=22% Similarity=0.380 Sum_probs=74.9
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||++++|.+|++|+|+||++|++|||++.+++.. ++++.|++.+|+++++||+++|+++|+|+|+++++|+||+|++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESR-GGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceecc-CCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 89999999999999999999999999999999986 4689999999999999999999999999999999999999973
No 343
>PLN03108 Rab family protein; Provisional
Probab=99.67 E-value=8.4e-16 Score=171.86 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=113.7
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|....+.....++++.+.....+.+++. .+.+|||||++.|..++..+++.+|++|+|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 478999999999999999999998876666666666665555666654 578999999999999999999999999999
Q ss_pred EeCCCCCcHHHH----HHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQTR----EAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt~----e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+.. ..+......+.|+++++||+|+...... .....+. ..+ .++++++||++|.|++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA------KEH--GLIFMEASAKTAQNVE 157 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHH------HHc--CCEEEEEeCCCCCCHH
Confidence 999984432222 2222222346899999999998652111 1111111 112 2589999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++|++++...
T Consensus 158 e~f~~l~~~~ 167 (210)
T PLN03108 158 EAFIKTAAKI 167 (210)
T ss_pred HHHHHHHHHH
Confidence 9999997543
No 344
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.67 E-value=4.7e-16 Score=167.82 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=112.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
++..+|+++|++|+|||||+++|.+..+. ..+.+++..+.....+..++. .+.+|||+|++.|..++..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35678999999999999999999998887 666666655555445555563 678999999999999999999999999
Q ss_pred EEEEeCCCCCcHHHH-HHHHHHH-HcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 144 VLVVAADDGVMPQTR-EAIAHAK-ISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 144 IlVvda~~g~~~qt~-e~i~~~~-~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
++|+|+++....+.. +++.... ..++|+++|+||+|+.+.... .....+. ..++ ..+++++||++|.|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~------~~~~-~~~~~~~Sa~~~~~v 154 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFC------RKLG-LPPPLHFSSKLGDSS 154 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHH------HHcC-CCCCEEEEeccCccH
Confidence 999999884322221 2233221 237899999999998643211 0011111 1111 124689999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|+.+...
T Consensus 155 ~~lf~~l~~~ 164 (169)
T cd01892 155 NELFTKLATA 164 (169)
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 345
>PRK00089 era GTPase Era; Reviewed
Probab=99.67 E-value=7e-16 Score=181.48 Aligned_cols=156 Identities=26% Similarity=0.367 Sum_probs=118.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh--------HHHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA--------FTAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~--------f~~~~~~~~ 137 (1527)
.|...|+++|++|+|||||+|+|.+..+ ..+..+.+|++........++.++.||||||... +......++
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 3567899999999999999999998876 5566777888776666666667999999999422 234445677
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc--hhHHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI--NLDRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
..+|++++|+|++++........+..+...+.|+++|+||+|+... ........+.. ..+..+++++||++
T Consensus 83 ~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~-------~~~~~~i~~iSA~~ 155 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSE-------LMDFAEIVPISALK 155 (292)
T ss_pred hcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHh-------hCCCCeEEEecCCC
Confidence 8999999999999977666667777777678999999999999732 11111222111 12246899999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.|+++|++.|...
T Consensus 156 ~~gv~~L~~~L~~~ 169 (292)
T PRK00089 156 GDNVDELLDVIAKY 169 (292)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999754
No 346
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.66 E-value=1.4e-16 Score=148.98 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=74.3
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcE-EEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKER-VRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~-~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||+.++|.+|++|+|+|+.+|++|||++++++..++++ .+|++++|+++++||.++|+++|+|.|+|+++|+||+|++
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 899999999999999999999999999999998764443 8999999999999999999999999999999999999963
No 347
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=1.5e-15 Score=198.18 Aligned_cols=152 Identities=24% Similarity=0.371 Sum_probs=123.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh--------hHHHHHHhhcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE--------AFTAMRARGAK 138 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e--------~f~~~~~~~~~ 138 (1527)
..++|+|+|++|||||||+|+|++... ..+..+|+|++.......+++..+.+|||||.+ .|......++.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 346899999999999999999998764 567789999999988889999999999999965 35566667889
Q ss_pred ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 139 VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
.+|++|+|+|++++..+...+++..++..+.|+|+|+||+|+..... ...... ..+ ....+++||++|.|
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~~~~~~-------~lg-~~~~~~iSA~~g~G 423 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--DAAEFW-------KLG-LGEPYPISAMHGRG 423 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--hHHHHH-------HcC-CCCeEEEECCCCCC
Confidence 99999999999999888887788888889999999999999864211 111111 011 12457999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|++|++.|...
T Consensus 424 I~eLl~~i~~~ 434 (712)
T PRK09518 424 VGDLLDEALDS 434 (712)
T ss_pred chHHHHHHHHh
Confidence 99999999754
No 348
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=99.66 E-value=5.5e-16 Score=148.41 Aligned_cols=94 Identities=57% Similarity=1.017 Sum_probs=90.9
Q ss_pred CceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEe
Q psy1758 243 AKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVI 322 (1527)
Q Consensus 243 ~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~ 322 (1527)
++++|+|+..+++.|++++++|++|+|++||++++|..++|||+|++.+++.+++|.||++|.|.||+++|.+||.|+++
T Consensus 1 a~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~gkVr~l~d~~g~~v~~a~Ps~~V~I~G~~~~P~aGd~~~~~ 80 (95)
T cd03702 1 AEGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYGKVRAMFDENGKRVKEAGPSTPVEILGLKGVPQAGDKFLVV 80 (95)
T ss_pred CeEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccccEEEEEECCCCCCCCEECCCCcEEEcCCCCCCCCCCEEEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhh
Q psy1758 323 LNEKKAREIGLFRQ 336 (1527)
Q Consensus 323 ~~e~~a~~~~~~~~ 336 (1527)
.+|++|++++.+|+
T Consensus 81 ~se~~Ak~~~~~r~ 94 (95)
T cd03702 81 ESEKEAKEIAEYRK 94 (95)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998774
No 349
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.66 E-value=2e-16 Score=148.17 Aligned_cols=79 Identities=25% Similarity=0.467 Sum_probs=75.8
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||++++|.+|++|+|+|+++|++|||++.+++..++++.+|++.+|+++++||+++|++.|+|+|+|++.|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 8999999999999999999999999999999998754789999999999999999999999999999999999999963
No 350
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.65 E-value=1.1e-15 Score=160.53 Aligned_cols=149 Identities=28% Similarity=0.340 Sum_probs=111.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
++|+++|++|+|||||++++....+...+.+++|.+.....+..++ ..+.+|||||++.|..++....+.++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 6899999999999999999999888777888999998887777887 67889999999999888877777777777777
Q ss_pred eCCCCC-------cHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGV-------MPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~-------~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|....+ ..+.......+ ..+.|+++++||+|+.............. .. ...+++++||++|.|+.
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~-~~~~~~~~sa~~~~gv~ 153 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAKLKTHVAFLFA------KL-NGEPIIPLSAETGKNID 153 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcchhhHHHHHHHh------hc-cCCceEEeecCCCCCHH
Confidence 766532 12222222322 23889999999999976432211111111 11 23479999999999999
Q ss_pred HHHHHH
Q psy1758 221 KLLENI 226 (1527)
Q Consensus 221 eL~~~l 226 (1527)
++++.|
T Consensus 154 ~~~~~l 159 (161)
T TIGR00231 154 SAFKIV 159 (161)
T ss_pred HHHHHh
Confidence 999987
No 351
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.65 E-value=8.7e-16 Score=189.72 Aligned_cols=150 Identities=28% Similarity=0.255 Sum_probs=116.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|++|+|||||+|+|+.... .......|+|.+.....+.++++.++||||||+.++..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~---------------a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER---------------AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD 278 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC---------------cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc
Confidence 346899999999999999999986421 12234578888888888899999999999999988765
Q ss_pred HHH--------HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1001 EVE--------RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 ev~--------~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.++ ..+..+|++++|+|++++...+....|.. ..+.|+++|+||+|+.......
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~---------------- 340 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE---------------- 340 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh----------------
Confidence 433 35788999999999998776665555554 4578999999999996532111
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.....|++++||++|. |++.|++.+.+.++.
T Consensus 341 ~~~~~~~i~iSAktg~----------GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 341 EENGKPVIRISAKTGE----------GIDELREAIKELAFG 371 (449)
T ss_pred hccCCceEEEEeeCCC----------CHHHHHHHHHHHHhh
Confidence 1123478999999998 999999999988753
No 352
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.65 E-value=2.3e-15 Score=160.65 Aligned_cols=151 Identities=23% Similarity=0.326 Sum_probs=116.9
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++++|||||+++|.+..+...+.+++..+.....+..++. .+.+|||+|++.|..++...++.+|++|+|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6999999999999999999999887777777667777777777766 58899999999999999999999999999999
Q ss_pred CCCCC----cHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 149 ADDGV----MPQTREAIAHAKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 149 a~~g~----~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
.++.. ...|.+.+......+.|++|++||.|+.+...-. ....+. ..++ .+++++||+++.||.++
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~------~~~~--~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFA------KELG--VPYFEVSAKNGENVKEI 152 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHH------HHTT--SEEEEEBTTTTTTHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHH------HHhC--CEEEEEECCCCCCHHHH
Confidence 99832 2244444444444468999999999987521111 111111 1222 68999999999999999
Q ss_pred HHHHHHH
Q psy1758 223 LENISLQ 229 (1527)
Q Consensus 223 ~~~l~~~ 229 (1527)
|..++..
T Consensus 153 f~~~i~~ 159 (162)
T PF00071_consen 153 FQELIRK 159 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999754
No 353
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.65 E-value=1.4e-15 Score=163.38 Aligned_cols=157 Identities=29% Similarity=0.340 Sum_probs=116.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch--
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG-- 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~-- 999 (1527)
.++|+++|++|+|||||+++|+..... ..+..+++|.......+.+++..+++|||||+.++.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERV---------------IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccce---------------eccCCCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 358999999999999999999865221 112235667766667777888899999999986542
Q ss_pred ---------HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC---hhhhHHHHHHHHhh
Q psy1758 1000 ---------GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR---PEWVVDATFDLFDK 1067 (1527)
Q Consensus 1000 ---------~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~---~~~v~~~~~~~~~~ 1067 (1527)
......+..+|++++|+|+..+...+...++..+...+.|+++++||+|+...+ .+...+.+.+.+..
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 146 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPF 146 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhccc
Confidence 123345688999999999999888888788888888899999999999997653 22223333322211
Q ss_pred hcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1068 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
....|++++||++|. |+.++++++.+
T Consensus 147 ------~~~~~~~~~Sa~~~~----------~i~~~~~~l~~ 172 (174)
T cd01895 147 ------LDYAPIVFISALTGQ----------GVDKLFDAIDE 172 (174)
T ss_pred ------ccCCceEEEeccCCC----------CHHHHHHHHHH
Confidence 113589999999998 99999988865
No 354
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.65 E-value=1.7e-15 Score=186.06 Aligned_cols=152 Identities=25% Similarity=0.296 Sum_probs=118.5
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH--------HHH
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA--------MRA 134 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~--------~~~ 134 (1527)
+....+++|+++|++|+|||||+|+|.+... .++..+|+|++.....+.+++.++.+|||||+..+.. ...
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 4556778999999999999999999998764 5677899999999999999999999999999754432 234
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.+++.+|++++|+|++++...+.. ++..+...++|+++|+||+|+...+. ..+. ..+ ..+++++||+
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~----~~~~------~~~--~~~~~~vSak 344 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL----EFFV------SSK--VLNSSNLSAK 344 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch----hhhh------hhc--CCceEEEEEe
Confidence 577899999999999987655544 45555556899999999999965311 1111 111 2478999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+ .||+++++.+...
T Consensus 345 ~-~gI~~~~~~L~~~ 358 (442)
T TIGR00450 345 Q-LKIKALVDLLTQK 358 (442)
T ss_pred c-CCHHHHHHHHHHH
Confidence 8 6999999988754
No 355
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.65 E-value=8.4e-16 Score=164.87 Aligned_cols=150 Identities=21% Similarity=0.277 Sum_probs=101.8
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhh-HHHHHHhhccccCEEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEA-FTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~-f~~~~~~~~~~aD~~IlVv 147 (1527)
+|+++|++|+|||||++++....+...+.+++. ......+..++. .+.||||||++. +......+++.+|++|+|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 489999999999999999987766544444332 222233344444 678999999985 4556677889999999999
Q ss_pred eCCCCCcHH----HHHHHHHHH--HcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCC-CC
Q psy1758 148 AADDGVMPQ----TREAIAHAK--ISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTG-VG 218 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~~~--~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg-~g 218 (1527)
|+++....+ |...+.... ..++|+++|+||+|+....... ....+ ...++ .+++++||++| .|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~------~~~~~--~~~~e~Sa~~~~~~ 151 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL------ASELG--CLFFEVSAAEDYDG 151 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH------HHHcC--CEEEEeCCCCCchh
Confidence 999854322 233333322 3479999999999985421100 01111 11122 58999999999 59
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|+++|+.++..
T Consensus 152 v~~~f~~l~~~ 162 (165)
T cd04146 152 VHSVFHELCRE 162 (165)
T ss_pred HHHHHHHHHHH
Confidence 99999999743
No 356
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.65 E-value=2.5e-15 Score=174.50 Aligned_cols=116 Identities=24% Similarity=0.367 Sum_probs=97.8
Q ss_pred EEEEEecCCCChhHHHHHHHccccccc------------------cCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFS------------------EAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~------------------~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
+|+++||+|+|||||+++|........ ...++|.......+.+++..+++|||||+.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 489999999999999999864321110 11355666667778889999999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~ 186 (1527)
+..+++.+|++++|+|++++...++...|..+...++|.++++||+|+...+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~ 134 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFD 134 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHH
Confidence 999999999999999999999999999999988899999999999998865433
No 357
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.65 E-value=1.8e-15 Score=162.89 Aligned_cols=154 Identities=20% Similarity=0.236 Sum_probs=106.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....+.+... ....+...+ ..+.+|||||++.|...+...++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 479999999999999999999988755555444322 233334443 37899999999999888888889999999999
Q ss_pred eCCCCCcHHH--HHHHHHHH--HcCCCEEEEEEcccCCcchhHHH---------HHHHhhhcccccccCCCCcEEEeecc
Q psy1758 148 AADDGVMPQT--REAIAHAK--ISGVPLIVAINKIDKLDINLDRI---------KQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 148 da~~g~~~qt--~e~i~~~~--~~~vpiIvviNKiDl~~~~~~~~---------~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
|+++....+. .+++..+. ..+.|+++|+||+|+........ ..... ......+ +..+++++||+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-~~~~~~~~Sa~ 156 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEG--EKLAKEI-GAIGYMECSAL 156 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHH--HHHHHHh-CCeEEEEeecC
Confidence 9997332221 11222222 23699999999999976432210 00000 0011111 22389999999
Q ss_pred CCCChhHHHHHHH
Q psy1758 215 TGVGINKLLENIS 227 (1527)
Q Consensus 215 tg~gI~eL~~~l~ 227 (1527)
+|.|++++++.|.
T Consensus 157 ~~~gi~~l~~~i~ 169 (171)
T cd00157 157 TQEGVKEVFEEAI 169 (171)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999885
No 358
>KOG0463|consensus
Probab=99.65 E-value=8.4e-16 Score=171.65 Aligned_cols=232 Identities=24% Similarity=0.328 Sum_probs=166.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccc--------------cCCceeEEEEEEEE-------------------Ee--
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFS--------------EAGGITQHIGAYNV-------------------VT-- 113 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~--------------~~~giT~~~~~~~~-------------------~~-- 113 (1527)
..+|+++|.+++|||||+..|+......+ -..|.|..++.-.+ +|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 35799999999999999977754322111 11222222221111 11
Q ss_pred ----CCeEEEEEeCCChhhHHHHHHhhc--cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH
Q psy1758 114 ----NHGSITFLDTPGHEAFTAMRARGA--KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187 (1527)
Q Consensus 114 ----~~~~i~~iDTPG~e~f~~~~~~~~--~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~ 187 (1527)
..+-++|||.+|||+|.+....+. ...|...|++-+..|+.-.|.|++..+....+|+++|++|+|.+.++.-+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLq 292 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQ 292 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHH
Confidence 113589999999999999888776 56799999999999999999999999999999999999999999876533
Q ss_pred HHHHHhhhcccc--------------------ccc--CCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCce
Q psy1758 188 IKQDLISEQVIP--------------------EEY--GGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKG 245 (1527)
Q Consensus 188 ~~~~l~~~~~~~--------------------~~~--~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~ 245 (1527)
..-.+....... .++ ...+|+|.+|..+|+|++-|...|.... ...+...+.|+..
T Consensus 293 EtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls--~R~~~~E~~PAeF 370 (641)
T KOG0463|consen 293 ETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLS--LRRQLNENDPAEF 370 (641)
T ss_pred HHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcC--cccccccCCCcce
Confidence 322221111100 011 1358999999999999998887775432 1223345678999
Q ss_pred EEEEEeecCCCceEEEEEeeccEEEeccEEEeccee------eeEeEeeccCCceeeecCCCcc
Q psy1758 246 VIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASY------GRIRSMLNENGKNILEAGPSIP 303 (1527)
Q Consensus 246 ~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~------~kVr~i~~~~g~~v~~a~~~~~ 303 (1527)
++.+.++.++.|+|+.+...+|+++.+|.+..|+.. ..|++|+...- ++..+.-|+.
T Consensus 371 QIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRM-pV~~VrcGQt 433 (641)
T KOG0463|consen 371 QIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRM-PVGIVRCGQT 433 (641)
T ss_pred eecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccc-cceEEeccch
Confidence 999999999999999999999999999999998763 47778865443 3444444443
No 359
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=5.7e-15 Score=157.47 Aligned_cols=157 Identities=24% Similarity=0.300 Sum_probs=124.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc--cccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHHh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN--VVFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRAR 135 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~--~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~~ 135 (1527)
..+.|+++|.+|||||||+|+|++.. ...+..||.||.+..+.+... +.|+|.|| .+.+..+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 56789999999999999999999977 688999999999998877533 88999999 5667777777
Q ss_pred hcc---ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEe
Q psy1758 136 GAK---VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 136 ~~~---~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
|+. .-.++++++|+..+....+.+.+..+...++|++++.||+|+...+.. +....+.+.......+. ..++..
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~--~~~~~~ 177 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD--QWVVLF 177 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc--ceEEEE
Confidence 763 357899999999999999999999999999999999999999874322 22223322222222221 118889
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
|+.++.|+++|.+.|...
T Consensus 178 ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 178 SSLKKKGIDELKAKILEW 195 (200)
T ss_pred ecccccCHHHHHHHHHHH
Confidence 999999999999998754
No 360
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.64 E-value=1.3e-15 Score=159.15 Aligned_cols=134 Identities=25% Similarity=0.360 Sum_probs=91.2
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCCh-----hhHHHHHHhhccccCEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH-----EAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~-----e~f~~~~~~~~~~aD~~Il 145 (1527)
+|+++|++|+|||||+++|.+..+. +.++++ +.+.. .+|||||+ +.|..+. ..++.+|++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYND---GAIDTPGEYVENRRLYSALI-VTAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEE
Confidence 6999999999999999999887652 222221 22222 68999997 3344443 45899999999
Q ss_pred EEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 146 VVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
|+|++++...+...++.. .+.|+++|+||+|+.+.... +....... .. +..+++++||++|.|++++|+
T Consensus 69 v~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~------~~-~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 69 VQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIERAKELLE------TA-GAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHHHHHHHH------Hc-CCCcEEEEecCCCCCHHHHHH
Confidence 999998765544333222 24599999999998652211 11111111 11 123799999999999999999
Q ss_pred HHH
Q psy1758 225 NIS 227 (1527)
Q Consensus 225 ~l~ 227 (1527)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 361
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.64 E-value=2.2e-15 Score=159.89 Aligned_cols=149 Identities=23% Similarity=0.275 Sum_probs=106.6
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||++++.+..+.....+.+. +.....+..++ ..+.+|||||++.+..++...++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 589999999999999999998776555444333 44444555554 478899999999999999999999999999999
Q ss_pred CCCCCcH-HHHHHHHHHH----HcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 149 ADDGVMP-QTREAIAHAK----ISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 149 a~~g~~~-qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+++.... +....+..+. ..++|+++|+||+|+....... ....+. ..++ .+++++||++|.|+++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~--~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA------KEWG--CPFIETSAKDNINIDE 151 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH------HHcC--CcEEEeccCCCCCHHH
Confidence 9874321 1222222222 1478999999999987622111 111111 1111 5899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+++.|..
T Consensus 152 l~~~l~~ 158 (160)
T cd00876 152 VFKLLVR 158 (160)
T ss_pred HHHHHHh
Confidence 9999864
No 362
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=4.9e-15 Score=175.58 Aligned_cols=155 Identities=21% Similarity=0.234 Sum_probs=112.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEe-CCeEEEEEeCCChh-------hHHHHHHhhccccC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFLDTPGHE-------AFTAMRARGAKVTD 141 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~-~~~~i~~iDTPG~e-------~f~~~~~~~~~~aD 141 (1527)
+.|+|+|.||+|||||+++|+.....++..+++|.+.....+.+ ++.++++|||||.- .+.....+.+..+|
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 56999999999999999999998877888899999999888888 45689999999952 23444556677899
Q ss_pred EEEEEEeCCCCCcHHHHHHH-HHHHH-----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 142 IVVLVVAADDGVMPQTREAI-AHAKI-----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e~i-~~~~~-----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
++++|+|+++....+..+.| ..+.. .+.|+++|+||+|+.+..... ....... .... ..+++++||++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~--~~~~~~~--~~~~--~~~i~~iSAkt 312 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER--EKRAALE--LAAL--GGPVFLISAVT 312 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH--HHHHHHH--HHhc--CCCEEEEEcCC
Confidence 99999999974322222222 22322 368999999999997533211 1111110 0111 25899999999
Q ss_pred CCChhHHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQA 230 (1527)
Q Consensus 216 g~gI~eL~~~l~~~~ 230 (1527)
++|+++|+++|....
T Consensus 313 g~GI~eL~~~L~~~l 327 (335)
T PRK12299 313 GEGLDELLRALWELL 327 (335)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997553
No 363
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.63 E-value=2e-15 Score=169.19 Aligned_cols=111 Identities=38% Similarity=0.580 Sum_probs=90.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccc-------------------cCCceeEEEEEEEEEeC-----CeEEEEEeCCCh
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFS-------------------EAGGITQHIGAYNVVTN-----HGSITFLDTPGH 126 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~-------------------~~~giT~~~~~~~~~~~-----~~~i~~iDTPG~ 126 (1527)
+|+++||+|||||||+++|........ ...|+|.......+.+. ...++|||||||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 599999999999999999976543211 22356666555555443 357999999999
Q ss_pred hhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC
Q psy1758 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181 (1527)
Q Consensus 127 e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~ 181 (1527)
++|...+..++..+|++++|+|+.++...++.+++..+...+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 9999999999999999999999999888888777777777789999999999985
No 364
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.63 E-value=1.9e-15 Score=161.18 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=98.9
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|+.|+|||||+.++....+.....+ +..+. ...+..++. .+.+|||+|++.+ .+++.+|++++|+|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-~~~~~-~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d 74 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESP-EGGRF-KKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFS 74 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCC-Cccce-EEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEE
Confidence 699999999999999999988776544332 22222 244566664 5889999999753 35678999999999
Q ss_pred CCCCCcHHHH-HHHHHHHH----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 149 ADDGVMPQTR-EAIAHAKI----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 149 a~~g~~~qt~-e~i~~~~~----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
.++....+.. .++..+.. .++|+++|+||+|+.......+....... ...+ ...++|++|||++|.||+++|
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~--~~~~-~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQ--LCAD-MKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHH--HHHH-hCCCcEEEEecCCCCCHHHHH
Confidence 9995543332 22222221 45799999999998532211111111101 1111 123689999999999999999
Q ss_pred HHHHH
Q psy1758 224 ENISL 228 (1527)
Q Consensus 224 ~~l~~ 228 (1527)
+.++.
T Consensus 152 ~~~~~ 156 (158)
T cd04103 152 QEAAQ 156 (158)
T ss_pred HHHHh
Confidence 98863
No 365
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.63 E-value=8.9e-15 Score=161.48 Aligned_cols=155 Identities=21% Similarity=0.299 Sum_probs=112.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----------hhHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----------EAFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----------e~f~~~~~ 134 (1527)
...++|+++|++|+|||||+++|++..+ ..+..+|.|+++....+ +.++.||||||+ +.|..+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 4668899999999999999999998753 44555677777665443 367999999993 55655555
Q ss_pred hhccc---cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEE
Q psy1758 135 RGAKV---TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 135 ~~~~~---aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.+++. ++++++|+|++++......+....+...++|+++++||+|+.+.... .....+... . ... ..++++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l--~~~--~~~~~~ 173 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKA-L--KFG--DDEVIL 173 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHH-H--Hhc--CCceEE
Confidence 55544 47888999998877666656666667788999999999999753221 111111111 1 111 358999
Q ss_pred eeccCCCChhHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~ 229 (1527)
+||++|.|++++++.|...
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 9999999999999998644
No 366
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.62 E-value=3.1e-15 Score=160.96 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=104.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe-EEEEEeCCCCCC-----
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHAD----- 997 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~iniiDTPGh~d----- 997 (1527)
||+++|++|+|||||+++|...... .....+.|+......+.+++. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~----------------v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK----------------IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc----------------ccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 7999999999999999999754211 112234566666666777776 999999999743
Q ss_pred --chHHHHHHHHhcCEEEEEEeCCCC-CChhH-HHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 998 --FGGEVERILSMVDNVLLLIDAVEG-PMPQT-RFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 998 --f~~ev~~~l~~aD~ailVVDa~~G-~~~qt-~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
+.....+.+..+|++++|+|++++ -..+. ..+.+.+.. .+.|+++|+||+|+.+.. ...+.+.......
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~ 143 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE--ELFELLKELLKEL 143 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch--hhHHHHHHHHhhC
Confidence 344555667789999999999986 22222 233333333 368999999999986533 2222222222111
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
...|++++||++|. |++.+++++.+.
T Consensus 144 ------~~~~~~~~Sa~~~~----------gi~~l~~~i~~~ 169 (170)
T cd01898 144 ------WGKPVFPISALTGE----------GLDELLRKLAEL 169 (170)
T ss_pred ------CCCCEEEEecCCCC----------CHHHHHHHHHhh
Confidence 23579999999998 999999998764
No 367
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.62 E-value=5.9e-15 Score=166.29 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=101.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhcc-ccCEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAK-VTDIVVL 145 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~-~aD~~Il 145 (1527)
.+|+++|++|+|||||+++|..+.+. ....+....+.....+..++ ..+.||||||++.+ .....++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 37999999999999999999877764 33333332233334444433 57899999999833 3344555 8999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchhHHH--HHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINLDRI--KQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|||+++....+. .+++..+.. .++|+|+|+||+|+........ ...+. ..+ .++++++||++|.|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a------~~~--~~~~~e~SA~~~~g 150 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACA------VVF--DCKFIETSAGLQHN 150 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHH------HHc--CCeEEEecCCCCCC
Confidence 999998432221 122222222 4689999999999865321110 11111 111 25799999999999
Q ss_pred hhHHHHHHHHHHH
Q psy1758 219 INKLLENISLQAE 231 (1527)
Q Consensus 219 I~eL~~~l~~~~~ 231 (1527)
|+++|+.+..+..
T Consensus 151 v~~l~~~l~~~~~ 163 (221)
T cd04148 151 VDELLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986543
No 368
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.62 E-value=2.8e-15 Score=159.87 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=94.2
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----hhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----EAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|+++|++|+|||||+++|.+..... ..|+.+ .+... .+|||||+ ..+...+..+++.+|++++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v 71 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV 71 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence 69999999999999999988643211 112221 22222 27999996 34444445568899999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
+|++++........+.. ..+.|+++++||+|+.+.+.+.....+. ..+...|++++||++|+|+++|++.+
T Consensus 72 ~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~-------~~~~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 72 HGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLL-------ETGFEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred EeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHH-------HcCCCCCEEEEECCCccCHHHHHHHH
Confidence 99998654333222221 2467999999999997644433222221 12222599999999999999999999
Q ss_pred HHH
Q psy1758 227 SLQ 229 (1527)
Q Consensus 227 ~~~ 229 (1527)
...
T Consensus 143 ~~~ 145 (158)
T PRK15467 143 ASL 145 (158)
T ss_pred HHh
Confidence 754
No 369
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.62 E-value=4e-15 Score=159.87 Aligned_cols=153 Identities=21% Similarity=0.139 Sum_probs=104.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH--
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~-- 1000 (1527)
|+|+++|++|+|||||+++|+..... .+...+.|.......+.+++.+++||||||+.+...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE----------------VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc----------------cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC
Confidence 58999999999999999999865211 112245566666667777889999999999854211
Q ss_pred ------HHHHHH-HhcCEEEEEEeCCCCCC---hhHHHHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 1001 ------EVERIL-SMVDNVLLLIDAVEGPM---PQTRFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 1001 ------ev~~~l-~~aD~ailVVDa~~G~~---~qt~~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
....++ ..+|++|+|+|+++... .....++..+... ++|+++|+||+|+.+.+. . .+... +..
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~--~-~~~~~-~~~- 139 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFED--L-SEIEE-EEE- 139 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhh--H-HHHHH-hhh-
Confidence 111122 34799999999986432 2223444555444 799999999999965432 1 11111 111
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...+|++++||++|. |++++++++.+.+
T Consensus 140 -----~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 167 (168)
T cd01897 140 -----LEGEEVLKISTLTEE----------GVDEVKNKACELL 167 (168)
T ss_pred -----hccCceEEEEecccC----------CHHHHHHHHHHHh
Confidence 124679999999998 9999999998754
No 370
>KOG0088|consensus
Probab=99.62 E-value=4.9e-16 Score=154.78 Aligned_cols=155 Identities=20% Similarity=0.185 Sum_probs=111.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
-.++|+++|..-+|||||+-++....|......++...+....++..+. .+.+|||+|||+|..+-+.|++.+|+++|
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 4578999999999999999999888876554443333333344444444 68899999999999999999999999999
Q ss_pred EEeCCCCCcHHH----HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 146 VVAADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 146 Vvda~~g~~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+|.+|....|- ...++.+....+.+++|+||+|+.........+... ..+.. ...++++||+.+.||.+
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~----YAesv--GA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEA----YAESV--GALYMETSAKDNVGISE 165 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHH----HHHhh--chhheecccccccCHHH
Confidence 999999654443 333344444456799999999996532211111111 11111 24689999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
||+.|..
T Consensus 166 lFe~Lt~ 172 (218)
T KOG0088|consen 166 LFESLTA 172 (218)
T ss_pred HHHHHHH
Confidence 9999874
No 371
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.62 E-value=1.9e-15 Score=166.81 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=97.8
Q ss_pred CEEEEEecCCCChhHHHH-HHHcccc-----ccccCCceeE-EEEE-E-------EEEeCC--eEEEEEeCCChhhHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLD-YIRKTNV-----VFSEAGGITQ-HIGA-Y-------NVVTNH--GSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~-~L~~~~~-----~~~~~~giT~-~~~~-~-------~~~~~~--~~i~~iDTPG~e~f~~~ 132 (1527)
.+|+++|+.++|||||+. ++.+..+ ...+.|++.. +... . ....++ ..+.||||||++.+ +
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence 589999999999999995 5655433 3334454421 1111 1 112333 37889999999863 5
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHH--HHHHHHH--cCCCEEEEEEcccCCcchh-----------------HHHHHH
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTRE--AIAHAKI--SGVPLIVAINKIDKLDINL-----------------DRIKQD 191 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e--~i~~~~~--~~vpiIvviNKiDl~~~~~-----------------~~~~~~ 191 (1527)
+..+++.+|++++|+|+++....+... ++..+.. .++|+++|+||+|+.+... ..+..+
T Consensus 81 ~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 160 (195)
T cd01873 81 RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPE 160 (195)
T ss_pred hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHH
Confidence 666889999999999999854333221 2222222 4789999999999864211 000000
Q ss_pred HhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 192 LISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 192 l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
. .......+ .++|++|||++|.||+++|+.++.
T Consensus 161 e--~~~~a~~~--~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 161 T--GRAVAKEL--GIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred H--HHHHHHHh--CCEEEEcCCCCCCCHHHHHHHHHH
Confidence 0 01111222 258999999999999999999874
No 372
>KOG1143|consensus
Probab=99.62 E-value=3e-15 Score=167.50 Aligned_cols=253 Identities=21% Similarity=0.247 Sum_probs=177.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccccccc--------------CCceeEEEEEEEE---------Ee------------
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSE--------------AGGITQHIGAYNV---------VT------------ 113 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~--------------~~giT~~~~~~~~---------~~------------ 113 (1527)
..+|+++|..++|||||+..|+.+....+. ..|.|..+....+ ++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 357999999999999999888765443221 1233333332221 11
Q ss_pred CCeEEEEEeCCChhhHHHHHHhhcc--ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHHH
Q psy1758 114 NHGSITFLDTPGHEAFTAMRARGAK--VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQ 190 (1527)
Q Consensus 114 ~~~~i~~iDTPG~e~f~~~~~~~~~--~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~ 190 (1527)
..+.++|+|.+||.+|......++. ..|.++||++|+.|+...|+|++..+...++|++++++|+|+.+.. .++..+
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~ 326 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVK 326 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHHH
Confidence 1235899999999999998888774 5699999999999999999999999999999999999999998642 222222
Q ss_pred HHhh----hccc-----------------ccccCCCCcEEEeeccCCCChhHHHHHHHHHHHH---HhhcCCCCCCCceE
Q psy1758 191 DLIS----EQVI-----------------PEEYGGASPFISISAKTGVGINKLLENISLQAEI---LELKAPVTTPAKGV 246 (1527)
Q Consensus 191 ~l~~----~~~~-----------------~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~---~~~~~~~~~p~~~~ 246 (1527)
++.. .+.. ....+..+|+|.+|+.+|+|++-|...|.-+... .+...-...|....
T Consensus 327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~~e~~~L~q~~~eFq 406 (591)
T KOG1143|consen 327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTAEERIQLVQLPAEFQ 406 (591)
T ss_pred HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCChHHHHHHhcCcceee
Confidence 2211 0000 0112356899999999999999877766422100 00001123577889
Q ss_pred EEEEeecCCCceEEEEEeeccEEEeccEEEeccee------eeEeEeeccCCceeeecCCCcceEec-CCCCCC--CCCC
Q psy1758 247 IIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASY------GRIRSMLNENGKNILEAGPSIPVEIQ-GLTKVP--FSGE 317 (1527)
Q Consensus 247 v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~------~kVr~i~~~~g~~v~~a~~~~~v~I~-gl~~~~--~~G~ 317 (1527)
|.+.+..+..|+|+.+.+.+|.++.|+.+++|+.. -+|.+|+.+ ...+..+.||++..++ +..+.+ .+|.
T Consensus 407 vdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rn-r~acrvvraGqaAslsl~d~D~~~LR~GM 485 (591)
T KOG1143|consen 407 VDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRN-RQACRVVRAGQAASLSLNDPDGVSLRRGM 485 (591)
T ss_pred HhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeecc-ccceeeecCccceeeeccCCCccchhcce
Confidence 99999999999999999999999999999999863 377778554 3456667777777665 222222 4677
Q ss_pred eEEEe
Q psy1758 318 ELFVI 322 (1527)
Q Consensus 318 ~~~~~ 322 (1527)
++...
T Consensus 486 Vl~~~ 490 (591)
T KOG1143|consen 486 VLAEI 490 (591)
T ss_pred EEeec
Confidence 66643
No 373
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.61 E-value=1.6e-14 Score=153.77 Aligned_cols=156 Identities=26% Similarity=0.326 Sum_probs=111.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhh--------HHHHHHhhcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA--------FTAMRARGAK 138 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~--------f~~~~~~~~~ 138 (1527)
+..+|+++|++|+|||||++++.+.... ....+.++.......+...+..+.+|||||... +.......+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999987753 333445555555555555667899999999543 3334556688
Q ss_pred ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 139 VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
.+|++++|+|+++.........+..+...+.|+++++||+|+.... ......+... .......+++++|++++.|
T Consensus 82 ~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK-EDLLPLLEKL----KELGPFAEIFPISALKGEN 156 (168)
T ss_pred hCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH-HHHHHHHHHH----HhccCCCceEEEEeccCCC
Confidence 9999999999998755555555566666789999999999997321 1111111111 1112245899999999999
Q ss_pred hhHHHHHHHH
Q psy1758 219 INKLLENISL 228 (1527)
Q Consensus 219 I~eL~~~l~~ 228 (1527)
++++++.|..
T Consensus 157 ~~~l~~~l~~ 166 (168)
T cd04163 157 VDELLEEIVK 166 (168)
T ss_pred hHHHHHHHHh
Confidence 9999999853
No 374
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.61 E-value=3.9e-15 Score=160.89 Aligned_cols=148 Identities=21% Similarity=0.206 Sum_probs=104.2
Q ss_pred EEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-CeEEEEEeCCChhhH-------HHHHHhhccccCEEEE
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEAF-------TAMRARGAKVTDIVVL 145 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~f-------~~~~~~~~~~aD~~Il 145 (1527)
++|++|+|||||+++|.+.....+..+++|.+.....+.++ +.++.||||||+... .......++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999987656667788888777777777 889999999997321 1123345778999999
Q ss_pred EEeCCCCC------cHH----HHHHHHHHH-------HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcE
Q psy1758 146 VVAADDGV------MPQ----TREAIAHAK-------ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 146 Vvda~~g~------~~q----t~e~i~~~~-------~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
|+|+++.. ... +...+.... ..+.|+++|+||+|+.......... ... .......++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~--~~~----~~~~~~~~~ 154 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL--VRE----LALEEGAEV 154 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH--HHH----HhcCCCCCE
Confidence 99999862 111 112222111 2478999999999997533211111 000 111223579
Q ss_pred EEeeccCCCChhHHHHHHH
Q psy1758 209 ISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~ 227 (1527)
+++||+++.|++++++.+.
T Consensus 155 ~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 155 VPISAKTEEGLDELIRAIY 173 (176)
T ss_pred EEEehhhhcCHHHHHHHHH
Confidence 9999999999999999885
No 375
>PRK11058 GTPase HflX; Provisional
Probab=99.61 E-value=6.6e-15 Score=179.75 Aligned_cols=148 Identities=24% Similarity=0.343 Sum_probs=111.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe-EEEEEeCCChhh---------HHHHHHhhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEA---------FTAMRARGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~e~---------f~~~~~~~~~~ 139 (1527)
|.|+++|.+|+|||||+|+|++..+.....+++|.+.....+.+.+. ++.||||||..+ |... ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~t-l~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKAT-LQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHH-HHHhhc
Confidence 79999999999999999999998877777888999988877877665 899999999632 4433 345688
Q ss_pred cCEEEEEEeCCCCCcHHH----HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCc-EEEeecc
Q psy1758 140 TDIVVLVVAADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASP-FISISAK 214 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~-v~~iSAk 214 (1527)
||++++|+|+++...... .+.+..+...++|+++|+||+|+.+....... .. .. ..+ ++++||+
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~----~~-----~~--~~~~~v~ISAk 345 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRID----RD-----EE--NKPIRVWLSAQ 345 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHH----HH-----hc--CCCceEEEeCC
Confidence 999999999998654333 23344444457899999999999653211110 00 01 123 5889999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|+++|++.|...
T Consensus 346 tG~GIdeL~e~I~~~ 360 (426)
T PRK11058 346 TGAGIPLLFQALTER 360 (426)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 376
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.60 E-value=9.7e-15 Score=173.02 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=110.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC-eEEEEEeCCChhh-------HHHHHHhhcccc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-GSITFLDTPGHEA-------FTAMRARGAKVT 140 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-~~i~~iDTPG~e~-------f~~~~~~~~~~a 140 (1527)
-..|+++|.+|+|||||+++|+.....++.++++|.+.....+.+++ .+++||||||... +.....+.+..+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 35799999999999999999999887777888889888888888877 7999999999632 333444556779
Q ss_pred CEEEEEEeCCCC---CcHHHHH-HHHHHH-----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 141 DIVVLVVAADDG---VMPQTRE-AIAHAK-----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 141 D~~IlVvda~~g---~~~qt~e-~i~~~~-----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
|++++|+|+++. ...+..+ +...+. ..+.|+++|+||+|+.+... . ..+.+. ..+.+ ..+++++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~--~-~~~~~~--l~~~~--~~~vi~i 309 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE--L-AELLKE--LKKAL--GKPVFPI 309 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH--H-HHHHHH--HHHHc--CCcEEEE
Confidence 999999999874 1112222 222222 14689999999999976421 1 111111 01111 2479999
Q ss_pred eccCCCChhHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISL 228 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~ 228 (1527)
||++++|+++|+++|..
T Consensus 310 SAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 310 SALTGEGLDELLYALAE 326 (329)
T ss_pred EccCCcCHHHHHHHHHH
Confidence 99999999999999864
No 377
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=6.2e-15 Score=158.11 Aligned_cols=157 Identities=19% Similarity=0.212 Sum_probs=106.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
..++|+++|++|+|||||+++|+.. .+... .....|. +.....+.+++ ..++||||||+.+|
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~--~~~~~------------~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~G~~~~ 65 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSG--TFSER------------QGNTIGV--DFTMKTLEIEGKRVKLQIWDTAGQERF 65 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCccc------------CCCccce--EEEEEEEEECCEEEEEEEEECCChHHH
Confidence 3579999999999999999999753 11100 0111222 23334455555 57899999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.......++.+|++++|+|+++....+....| ..... .++|+++|+||+|+...+. ...++.........
T Consensus 66 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~----- 139 (165)
T cd01864 66 RTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQRE-VLFEEACTLAEKNG----- 139 (165)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccc-cCHHHHHHHHHHcC-----
Confidence 99899999999999999999875433333233 33322 3688999999999865432 11222222221111
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
..+++++||++|. |++++++.+.+.
T Consensus 140 -~~~~~e~Sa~~~~----------~v~~~~~~l~~~ 164 (165)
T cd01864 140 -MLAVLETSAKESQ----------NVEEAFLLMATE 164 (165)
T ss_pred -CcEEEEEECCCCC----------CHHHHHHHHHHh
Confidence 1358999999998 999999998765
No 378
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.60 E-value=5.3e-15 Score=157.70 Aligned_cols=154 Identities=17% Similarity=0.205 Sum_probs=105.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+++|||||+++|+....... ......|.++ ..+.+++..+++|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-------------~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-------------IIVPTVGFNV----ESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-------------eecCccccce----EEEEECCEEEEEEECCCCHhhHHHHH
Confidence 589999999999999999975421110 1112233332 33567789999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHH------HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL------KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~------~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.+++.+|++|+|+|++++... .....+..+. ..++|+++|+||+|+.++... .++...+. +.. .....
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~---~~~~~~l~-~~~-~~~~~ 138 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA---VKITQLLG-LEN-IKDKP 138 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH---HHHHHHhC-Ccc-ccCce
Confidence 999999999999999875321 2222223222 247999999999999765321 22222221 111 01223
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++++.+||++|. |+++++++|.+
T Consensus 139 ~~~~~~Sa~~g~----------gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTGE----------GLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCCC----------chHHHHHHHhc
Confidence 568999999998 99999999864
No 379
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.60 E-value=4.9e-15 Score=160.44 Aligned_cols=155 Identities=17% Similarity=0.246 Sum_probs=107.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|++++|||||+++|+... +. ..+...|.. ...+.++++.+++|||||+..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~--~~-------------~~~~t~g~~----~~~~~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGED--ID-------------TISPTLGFQ----IKTLEYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC--CC-------------CcCCccccc----eEEEEECCEEEEEEECCCCHHHHH
Confidence 34689999999999999999997541 11 111222322 234556788999999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+...++.+|++++|+|+++.- ..+....+... ...+.|+++|+||+|+.+... .+++.+.+.... ....
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~--~~~~ 148 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS---EEEIREALELDK--ISSH 148 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCC---HHHHHHHhCccc--cCCC
Confidence 8888999999999999998752 22222222222 225789999999999976432 233333332111 1123
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
.+|++.+||++|. |++++++++.+
T Consensus 149 ~~~~~~~Sa~~g~----------gi~~l~~~l~~ 172 (173)
T cd04154 149 HWRIQPCSAVTGE----------GLLQGIDWLVD 172 (173)
T ss_pred ceEEEeccCCCCc----------CHHHHHHHHhc
Confidence 4689999999998 99999998864
No 380
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.60 E-value=5.1e-15 Score=162.53 Aligned_cols=157 Identities=20% Similarity=0.256 Sum_probs=105.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+.....+++.... ...+..++. .+.+|||||++.|.......++.+|++++|+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 4799999999999999999987776554444433333 223444544 5789999999998877777789999999999
Q ss_pred eCCCCCcHH-----HHHHHHHHHHcCCCEEEEEEcccCCcchhHH-------HHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 148 AADDGVMPQ-----TREAIAHAKISGVPLIVAINKIDKLDINLDR-------IKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 148 da~~g~~~q-----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-------~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
|+++....+ |.+.+.. ...++|+++|+||+|+.+..... ... ..........+ +..++|++||++
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~e~Sa~~ 157 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRR-YCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAKEI-GAKKYMECSALT 157 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEeeChhhhhCcccccccccCCcCC-HHHHHHHHHHh-CCcEEEEccCCC
Confidence 998743222 2332322 22368999999999985421100 000 00000111112 234799999999
Q ss_pred CCChhHHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQA 230 (1527)
Q Consensus 216 g~gI~eL~~~l~~~~ 230 (1527)
|.|++++|+.+....
T Consensus 158 ~~~v~~~f~~l~~~~ 172 (187)
T cd04129 158 GEGVDDVFEAATRAA 172 (187)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997543
No 381
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.60 E-value=4.4e-15 Score=161.21 Aligned_cols=157 Identities=24% Similarity=0.292 Sum_probs=117.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|..|+|||||+++|....... ..| |.......+.+.+..+.+||.+|+..+...+..++..+|++|+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~p--T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIP--TIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEE--ESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCc--ccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEE
Confidence 456789999999999999999998765432 222 33444566777899999999999999999999999999999999
Q ss_pred EeCCCCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++.. ..+..+.+..+. ..++|++|++||+|+.++.. .++...+...... ....+.++.+||++|+|+.
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~---~~~~~~v~~~sa~~g~Gv~ 165 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK---NKRPWSVFSCSAKTGEGVD 165 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT---SSSCEEEEEEBTTTTBTHH
T ss_pred EecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc---cCCceEEEeeeccCCcCHH
Confidence 9999732 233444444332 24689999999999987533 3333333222211 1245689999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
+.+++|..+
T Consensus 166 e~l~WL~~~ 174 (175)
T PF00025_consen 166 EGLEWLIEQ 174 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999753
No 382
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.60 E-value=2.9e-15 Score=141.97 Aligned_cols=85 Identities=24% Similarity=0.422 Sum_probs=78.6
Q ss_pred CCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecce
Q psy1758 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIE 1198 (1527)
Q Consensus 1119 ~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~ 1198 (1527)
++||+++||++.+|++.|+++|+|||+|+|++||.|.+.. ...+|+.+|+.++|.++.++++|.|||||+++|++
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~ 75 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-----EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLK 75 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-----CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCC
Confidence 4799999999999999999999999999999999998753 23478999999999999999999999999999999
Q ss_pred ecccCCeeeC
Q psy1758 1199 EICIGSTICD 1208 (1527)
Q Consensus 1199 ~~~iGdTi~~ 1208 (1527)
++.+||||++
T Consensus 76 ~~~~Gdtl~~ 85 (85)
T cd03690 76 GLRVGDVLGD 85 (85)
T ss_pred CCcCccccCC
Confidence 9999999964
No 383
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.60 E-value=4.1e-15 Score=158.67 Aligned_cols=143 Identities=20% Similarity=0.230 Sum_probs=100.5
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC----CCc
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH----ADF 998 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh----~df 998 (1527)
++|+++|++|+|||||+++|..... .++ ....+.|.+. ++|||||. .++
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~-----------------~~~--------~~~~v~~~~~--~~iDtpG~~~~~~~~ 54 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT-----------------LAR--------KTQAVEFNDK--GDIDTPGEYFSHPRW 54 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc-----------------cCc--------cceEEEECCC--CcccCCccccCCHHH
Confidence 4799999999999999999864310 000 1122233332 37999995 467
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++..++..+|++++|+|++++...++..++.. ..+.|+++++||+|+++.+.+. +.+.+.+++ ...|
T Consensus 55 ~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~----~~~~~~~~~-----~~~p 123 (158)
T PRK15467 55 YHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAA----TRKLLLETG-----FEEP 123 (158)
T ss_pred HHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHH----HHHHHHHcC-----CCCC
Confidence 7777778899999999999998765544433332 2467899999999997655432 233222222 1248
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
++++||++|. |+++|++.+.+.++.
T Consensus 124 ~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 124 IFELNSHDPQ----------SVQQLVDYLASLTKQ 148 (158)
T ss_pred EEEEECCCcc----------CHHHHHHHHHHhchh
Confidence 9999999998 999999999887754
No 384
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.59 E-value=9.7e-15 Score=154.30 Aligned_cols=147 Identities=27% Similarity=0.267 Sum_probs=108.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH-
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE- 1001 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e- 1001 (1527)
.+|+++|++|+|||||+++|+....... ...+|+|.......+.+.+.++++|||||+.++...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIV---------------SDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEec---------------cCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH
Confidence 3799999999999999999986522111 123567777666777888899999999999887543
Q ss_pred -------HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1002 -------VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1002 -------v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
+...+..+|++++|+|++..........+.. ..+.|+++|+||+|+.+.... ....
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~---------------~~~~ 129 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL---------------LSLL 129 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc---------------cccc
Confidence 3346789999999999997544444333333 568999999999998754311 0112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...|++++||+++. |++.|+++|.+.+
T Consensus 130 ~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 156 (157)
T cd04164 130 AGKPIIAISAKTGE----------GLDELKEALLELA 156 (157)
T ss_pred CCCceEEEECCCCC----------CHHHHHHHHHHhh
Confidence 24589999999998 9999999987654
No 385
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.59 E-value=1.3e-14 Score=188.14 Aligned_cols=152 Identities=21% Similarity=0.291 Sum_probs=118.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH----------HHhhc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM----------RARGA 137 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~----------~~~~~ 137 (1527)
+..+|+++|++|+|||||+|+|++.+...++.+|+|.+.....+.+++.++++|||||+.+|... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 34689999999999999999999988888888999999998889999999999999998876431 11222
Q ss_pred --cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 138 --KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 138 --~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
..+|++++|+|+++.. +....+.++.+.++|+++|+||+|+.+.. .....+.+. +.+ .+|++++||+
T Consensus 82 ~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~------~~L--G~pVvpiSA~ 151 (772)
T PRK09554 82 LSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALS------ARL--GCPVIPLVST 151 (772)
T ss_pred hccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHH------HHh--CCCEEEEEee
Confidence 4789999999999843 33445566778899999999999986422 111112221 122 2589999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|+|++++.+.+...
T Consensus 152 ~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 152 RGRGIEALKLAIDRH 166 (772)
T ss_pred cCCCHHHHHHHHHHh
Confidence 999999999998644
No 386
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.59 E-value=7.9e-15 Score=156.86 Aligned_cols=154 Identities=21% Similarity=0.323 Sum_probs=107.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++++|||||+++++... +... .....+.++......+......++||||||+..|.....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDG--YEPQ------------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC------------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Confidence 79999999999999999998541 1100 011223343333334444557899999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTR-FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+++.+|++|+|+|++++...+.. .++..+.+. ++|+++|+||+|+.... .++..... ....+|++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~-------~~~~~~~~ 136 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV----TQKKFNFA-------EKHNLPLY 136 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH----HHHHHHHH-------HHcCCeEE
Confidence 999999999999999876543333 333444443 78999999999985321 11111111 11246899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++||++|. |++.+++.+.+.+.
T Consensus 137 ~~Sa~~~~----------gv~~l~~~l~~~~~ 158 (161)
T cd04124 137 YVSAADGT----------NVVKLFQDAIKLAV 158 (161)
T ss_pred EEeCCCCC----------CHHHHHHHHHHHHH
Confidence 99999998 99999999987664
No 387
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=1.9e-14 Score=176.10 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=113.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChh----h---HHHHHHhhccccC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE----A---FTAMRARGAKVTD 141 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e----~---f~~~~~~~~~~aD 141 (1527)
-..|+|+|.||+|||||+++|+......+..+++|++.....+.+.+.+++||||||.. . ......+.+..||
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 46799999999999999999999888778889999999999999999999999999931 1 1222345567899
Q ss_pred EEEEEEeCCCC-----CcHH---HHHHHHHH-----------HHcCCCEEEEEEcccCCcchhHHHHHHHhhhccccccc
Q psy1758 142 IVVLVVAADDG-----VMPQ---TREAIAHA-----------KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEY 202 (1527)
Q Consensus 142 ~~IlVvda~~g-----~~~q---t~e~i~~~-----------~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~ 202 (1527)
++|+|+|+++. ...+ +.+.+... ...+.|+|||+||+|+.+... ....+... . ...
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e--l~e~l~~~-l--~~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE--LAEFVRPE-L--EAR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH--HHHHHHHH-H--HHc
Confidence 99999999751 1111 11122211 234689999999999975321 11111111 0 111
Q ss_pred CCCCcEEEeeccCCCChhHHHHHHHHHHHH
Q psy1758 203 GGASPFISISAKTGVGINKLLENISLQAEI 232 (1527)
Q Consensus 203 ~~~~~v~~iSAktg~gI~eL~~~l~~~~~~ 232 (1527)
.+++|++||+++.|+++|+++|......
T Consensus 314 --g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 314 --GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred --CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2589999999999999999999866543
No 388
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.59 E-value=5.7e-15 Score=156.64 Aligned_cols=147 Identities=27% Similarity=0.366 Sum_probs=107.5
Q ss_pred EEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH-----
Q psy1758 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE----- 1001 (1527)
Q Consensus 927 IiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e----- 1001 (1527)
++|++|+|||||+++++.... .....+|+|+......+.+++..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ----------------KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc----------------cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH
Confidence 589999999999999975421 11123688888888888999999999999999887642
Q ss_pred -HHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1002 -VERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1002 -v~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
....+. .+|++++|+|+... .+....+..+.+.++|+++|+||+|+.+.+. ...+....... +.+|
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~-------~~~~ 133 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRG--IKIDLDKLSEL-------LGVP 133 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccccc--chhhHHHHHHh-------hCCC
Confidence 334443 89999999999873 3334455566778999999999999975431 11111111111 2358
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
++++||++|. |+..+++.+...
T Consensus 134 ~~~iSa~~~~----------~~~~l~~~l~~~ 155 (158)
T cd01879 134 VVPTSARKGE----------GIDELKDAIAEL 155 (158)
T ss_pred eEEEEccCCC----------CHHHHHHHHHHH
Confidence 9999999998 999999988764
No 389
>PRK00089 era GTPase Era; Reviewed
Probab=99.59 E-value=1.5e-14 Score=170.15 Aligned_cols=160 Identities=28% Similarity=0.310 Sum_probs=113.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc---
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF--- 998 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df--- 998 (1527)
...|+++|++|+|||||+|+|++....+ .....++|.......+..++.++.++||||+.+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~---------------vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~ 69 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI---------------VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRA 69 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee---------------cCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhH
Confidence 3579999999999999999998652211 1112233333333334445689999999997653
Q ss_pred -----hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 -----GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 -----~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
...+..++..+|++++|+|++++.......++..+...+.|.++|+||+|+... .+.... ..+.+.+...
T Consensus 70 l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~-~~~l~~-~~~~l~~~~~--- 144 (292)
T PRK00089 70 LNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD-KEELLP-LLEELSELMD--- 144 (292)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC-HHHHHH-HHHHHHhhCC---
Confidence 234556788999999999999977777777777777778999999999999632 122222 2222211111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+++++||++|. |++.|++.+.+.+|+
T Consensus 145 --~~~i~~iSA~~~~----------gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 --FAEIVPISALKGD----------NVDELLDVIAKYLPE 172 (292)
T ss_pred --CCeEEEecCCCCC----------CHHHHHHHHHHhCCC
Confidence 2468999999998 999999999999875
No 390
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=2e-14 Score=149.70 Aligned_cols=168 Identities=21% Similarity=0.204 Sum_probs=130.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCCCchH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHADFGG 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~df~~ 1000 (1527)
.-+|+++|+.++||||++.++.............. ++.. ..|-+|+.....++.+.+ +.+.|.|||||..|.-
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~----~s~k--~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS----VSGK--GKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF 83 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccc----cccc--cccceeEeecccceEEcCcceEEEecCCCcHHHHH
Confidence 35899999999999999999987754322111100 1111 145688888888888876 9999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC-CccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG-FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~g-lp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
.++-.++.++++|++||++.+.....++++....... +|.+|++||.|+.++.+.+.+.++.+. . .+..|+
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~----~----~~~~~v 155 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKL----E----LLSVPV 155 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHh----c----cCCCce
Confidence 9999999999999999999976665677788877777 999999999999999876555554431 1 146799
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhh-cCC
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKY-VPV 1113 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~-lp~ 1113 (1527)
+..+|.+++ +..+.++.+..+ .+.
T Consensus 156 i~~~a~e~~----------~~~~~L~~ll~~~~~~ 180 (187)
T COG2229 156 IEIDATEGE----------GARDQLDVLLLKDLLG 180 (187)
T ss_pred eeeecccch----------hHHHHHHHHHhhcccC
Confidence 999999998 777888877665 443
No 391
>KOG0083|consensus
Probab=99.59 E-value=6.4e-16 Score=149.64 Aligned_cols=181 Identities=21% Similarity=0.257 Sum_probs=124.7
Q ss_pred EEecCCCChhHHHHHHHcccccc-ccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~~-~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
++|++++|||+|+-++..+.|.. +-..+..+|+....++.++. ++++|||+|||+|++....+++.+|..++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999998887776633 33345556666666666554 7889999999999999999999999999999999
Q ss_pred CCCcHHHH----HHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 151 DGVMPQTR----EAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 151 ~g~~~qt~----e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
+....... ..+.......+.+.+++||+|+.........+ -....+.+ ..||.++||+||.|++-.|-.|
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~dd----g~kla~~y--~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDD----GEKLAEAY--GIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccch----HHHHHHHH--CCCceeccccccccHhHHHHHH
Confidence 86654433 33334445567799999999996521110000 00111223 2699999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEE
Q psy1758 227 SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATV 262 (1527)
Q Consensus 227 ~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~ 262 (1527)
...........+++..+. ..++..+.++|.++.+
T Consensus 156 a~~l~k~~~~~~~~~~~~--~~~~v~~~~k~eia~c 189 (192)
T KOG0083|consen 156 AEELKKLKMGAPPEGEFA--DHDSVADEGKGEIARC 189 (192)
T ss_pred HHHHHHhccCCCCCCccc--cchhHHhcCCCccccc
Confidence 865544444555444332 2334456677766643
No 392
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.59 E-value=7.7e-15 Score=159.92 Aligned_cols=155 Identities=19% Similarity=0.154 Sum_probs=109.8
Q ss_pred cccccccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEe
Q psy1758 912 LFLSDENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIID 991 (1527)
Q Consensus 912 i~lsq~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiD 991 (1527)
+.+.+.+.++..+|+|+|++|+|||||+++|+..... . ......|.|..... +.++ ..+.+||
T Consensus 8 ~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~-------------~~~~~~~~t~~~~~--~~~~-~~~~liD 70 (179)
T TIGR03598 8 VKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKL-A-------------RTSKTPGRTQLINF--FEVN-DGFRLVD 70 (179)
T ss_pred ccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c-------------cccCCCCcceEEEE--EEeC-CcEEEEe
Confidence 3455666778889999999999999999999865211 0 01122455554433 2233 3799999
Q ss_pred CCCCC----------CchHHHHHHHH---hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-Chhhh
Q psy1758 992 TPGHA----------DFGGEVERILS---MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWV 1057 (1527)
Q Consensus 992 TPGh~----------df~~ev~~~l~---~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~v 1057 (1527)
|||+. +|...+..+++ .+|++++|+|++.+...++..+++.+...++|+++|+||+|+... +.+..
T Consensus 71 tpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~ 150 (179)
T TIGR03598 71 LPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQ 150 (179)
T ss_pred CCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHH
Confidence 99963 23444444454 468999999999999889988888888899999999999998643 23445
Q ss_pred HHHHHHHHhhhcccccccCCcEEEeccccCC
Q psy1758 1058 VDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1058 ~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
.+++++.+... ...++++++||++|+
T Consensus 151 ~~~i~~~l~~~-----~~~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 151 LKKIKKALKKD-----ADDPSVQLFSSLKKT 176 (179)
T ss_pred HHHHHHHHhhc-----cCCCceEEEECCCCC
Confidence 56666555432 123579999999998
No 393
>KOG1423|consensus
Probab=99.59 E-value=1e-14 Score=161.07 Aligned_cols=172 Identities=26% Similarity=0.301 Sum_probs=123.6
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC------hhhH------H
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG------HEAF------T 130 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG------~e~f------~ 130 (1527)
+...+...|+++|.||+|||||.|.+.+..+ +++....+|++-....++.+..++.|+|||| |... .
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 4456788999999999999999999999885 7788888999988899999999999999999 2222 2
Q ss_pred HHHHhhccccCEEEEEEeCCC---CCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH--H------------HHHHh
Q psy1758 131 AMRARGAKVTDIVVLVVAADD---GVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR--I------------KQDLI 193 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~---g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~--~------------~~~l~ 193 (1527)
.....++..||++++|+|+++ ...++....+... .++|-|+|.||+|.......- . +.++.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 234467789999999999996 2334444444332 478999999999987522100 0 00111
Q ss_pred hhc-ccc--------cccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcC
Q psy1758 194 SEQ-VIP--------EEYGGASPFISISAKTGVGINKLLENISLQAEILELKA 237 (1527)
Q Consensus 194 ~~~-~~~--------~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~ 237 (1527)
+.. ..+ ..|..+..+|++||++|+||++|.++|..++...+++.
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y 277 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKY 277 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCC
Confidence 000 000 11344567999999999999999999987765444443
No 394
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=2.3e-14 Score=173.76 Aligned_cols=151 Identities=22% Similarity=0.242 Sum_probs=109.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-CeEEEEEeCCChhh-------HHHHHHhhccccC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEA-------FTAMRARGAKVTD 141 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~-------f~~~~~~~~~~aD 141 (1527)
..|+++|.||||||||+++|++.....+..+++|.+.....+.+. +..++||||||... +.....+.+..+|
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 379999999999999999999988777788899999988888877 67899999999521 2233344566799
Q ss_pred EEEEEEeCCCC----CcHHHHHHHHHHHH-----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEee
Q psy1758 142 IVVLVVAADDG----VMPQTREAIAHAKI-----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 142 ~~IlVvda~~g----~~~qt~e~i~~~~~-----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
++++|+|+++. ...+...+...+.. .+.|++||+||+|+.... .....+... ++ .+++++|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l~~l~~~------l~--~~i~~iS 308 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENLEEFKEK------LG--PKVFPIS 308 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHHHHHHHH------hC--CcEEEEe
Confidence 99999999753 11222222233322 478999999999985421 111222111 11 4799999
Q ss_pred ccCCCChhHHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQA 230 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~~ 230 (1527)
|++++|+++|++.|....
T Consensus 309 A~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 309 ALTGQGLDELLYAVAELL 326 (424)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999997543
No 395
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.58 E-value=1.5e-14 Score=152.16 Aligned_cols=152 Identities=26% Similarity=0.346 Sum_probs=114.2
Q ss_pred EEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeC-CeEEEEEeCCChhhHH-------HHHHhhccccCEEE
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEAFT-------AMRARGAKVTDIVV 144 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~f~-------~~~~~~~~~aD~~I 144 (1527)
++|++|+|||||++++.+.... .+..+++|........... ...+.||||||+..+. ......++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987664 6666777777777766665 6689999999976654 33445778999999
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 145 LVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 145 lVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+|+|+.+.........+......+.|+++|+||+|+...+....... ............+++++||+++.|++++++
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~ 157 (163)
T cd00880 81 FVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLE---LRLLILLLLLGLPVIAVSALTGEGIDELRE 157 (163)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHH---HHHhhcccccCCceEEEeeeccCCHHHHHH
Confidence 99999998776666656666678999999999999976432222110 001111223457999999999999999999
Q ss_pred HHHH
Q psy1758 225 NISL 228 (1527)
Q Consensus 225 ~l~~ 228 (1527)
++..
T Consensus 158 ~l~~ 161 (163)
T cd00880 158 ALIE 161 (163)
T ss_pred HHHh
Confidence 9864
No 396
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1e-14 Score=164.25 Aligned_cols=172 Identities=22% Similarity=0.188 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhC---ChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeecccccceecc
Q psy1758 832 IRVLSEDIGKMLG---CGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDLLSKRFLH 908 (1527)
Q Consensus 832 irsl~~dig~~l~---~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~~~~~i~n 908 (1527)
++.++++.-..|. ++..+.+|||..+|++ |..+.++.+ .+.+|-.+...|..+|.++++
T Consensus 106 i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~----aSiik~i~~-----~L~fL~~~r~~l~~LP~Idp~--------- 167 (346)
T COG1084 106 IEKLAREYIRLLKAAKDPKEANQLRRQAFGRV----ASIIKKIDD-----DLEFLRKARDHLKKLPAIDPD--------- 167 (346)
T ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH----HHHHHHhhH-----HHHHHHHHHHHHhcCCCCCCC---------
Confidence 5666666666676 7899999999999999 666766633 244566666677788876644
Q ss_pred CcccccccccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEE
Q psy1758 909 GQNLFLSDENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRIN 988 (1527)
Q Consensus 909 G~~i~lsq~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~in 988 (1527)
.++|.|.|+||+|||||+.+++.....+..++++. -....++|++++.+++
T Consensus 168 -------------~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT----------------K~i~vGhfe~~~~R~Q 218 (346)
T COG1084 168 -------------LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT----------------KGIHVGHFERGYLRIQ 218 (346)
T ss_pred -------------CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc----------------cceeEeeeecCCceEE
Confidence 25899999999999999999999988888887753 3334589999999999
Q ss_pred EEeCCCCCCch--------HHHHHHH-HhcCEEEEEEeCCCC----CChhHHHHHHHHH-HcCCccEEEEeccCCCC
Q psy1758 989 IIDTPGHADFG--------GEVERIL-SMVDNVLLLIDAVEG----PMPQTRFVTRKAL-KLGFKPIVVVNKIDRSN 1051 (1527)
Q Consensus 989 iiDTPGh~df~--------~ev~~~l-~~aD~ailVVDa~~G----~~~qt~~~~~~~~-~~glp~IvviNKiD~~~ 1051 (1527)
+|||||.-|-. .....+| ...+.+++++|+++- +..|-. +|+... .++.|+++|+||+|..+
T Consensus 219 vIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~f~~p~v~V~nK~D~~~ 294 (346)
T COG1084 219 VIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKELFKAPIVVVINKIDIAD 294 (346)
T ss_pred EecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHhcCCCeEEEEecccccc
Confidence 99999987721 1222334 456789999999862 334443 344333 45788999999999864
No 397
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.58 E-value=4.4e-14 Score=158.69 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=111.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|++|+|||||++++..+.+...+.+++..++....+..++ ..+.+|||||++.|..++..++..+|++++
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~ 87 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAII 87 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEE
Confidence 447899999999999999998877777666666665555554444443 478899999999999999888999999999
Q ss_pred EEeCCCCCcHHHHHHH-HHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 146 VVAADDGVMPQTREAI-AHAK--ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i-~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|+|.++....+....| ..+. ..++|+++++||+|+.+.........+. .. ....++++||++|.|++++
T Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~------~~--~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 88 MFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFH------RK--KNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHH------HH--cCCEEEEEeCCCCCCHHHH
Confidence 9999985544333222 1111 2468999999999986422111111111 11 1247999999999999999
Q ss_pred HHHHHHHH
Q psy1758 223 LENISLQA 230 (1527)
Q Consensus 223 ~~~l~~~~ 230 (1527)
|.+|+...
T Consensus 160 f~~ia~~l 167 (215)
T PTZ00132 160 FLWLARRL 167 (215)
T ss_pred HHHHHHHH
Confidence 99997543
No 398
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=1.8e-14 Score=174.02 Aligned_cols=156 Identities=18% Similarity=0.195 Sum_probs=112.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe-EEEEEeCCChhh-------HHHHHHhhccccC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEA-------FTAMRARGAKVTD 141 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~e~-------f~~~~~~~~~~aD 141 (1527)
.-|+|+|.||+|||||+|+|++....++..+++|+......+.+.+. .+.|+||||.-. ......+.+..+|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 36999999999999999999998888888999999999988888764 699999999421 2333445688999
Q ss_pred EEEEEEeCCC----CCcHHHHHHHHHHHH-----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEee
Q psy1758 142 IVVLVVAADD----GVMPQTREAIAHAKI-----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 142 ~~IlVvda~~----g~~~qt~e~i~~~~~-----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
++++|+|++. ....+...++..+.. .+.|+++|+||+|+.... .....+... ...+....+++++|
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~--el~~~l~~l---~~~~~~~~~Vi~IS 314 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE--EAEERAKAI---VEALGWEGPVYLIS 314 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH--HHHHHHHHH---HHHhCCCCCEEEEE
Confidence 9999999872 122222333333333 368999999999996532 111111110 01111123789999
Q ss_pred ccCCCChhHHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQA 230 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~~ 230 (1527)
|+++.|+++|++.|....
T Consensus 315 A~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 315 AASGLGVKELCWDLMTFI 332 (390)
T ss_pred CCCCcCHHHHHHHHHHHh
Confidence 999999999999997654
No 399
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.58 E-value=8.9e-15 Score=155.81 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=103.8
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++++|||||+++|.... +.. .....|.+ ...+.+.+..++||||||+.+|...+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~~~-------------~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--VVT-------------TIPTIGFN----VETVTYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--CcC-------------cCCccCcC----eEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 48999999999999999996431 110 01111222 234567788999999999999998888
Q ss_pred HHHHhcCEEEEEEeCCCCCC-hhHHHHHHH-HH---HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPM-PQTRFVTRK-AL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~-~qt~~~~~~-~~---~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
.++..+|++|+|+|+++... ......+.. .. ..++|+++|+||+|+.++.. ..++...+.... .....++
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---~~~i~~~~~~~~--~~~~~~~ 136 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS---EAEISEKLGLSE--LKDRTWS 136 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC---HHHHHHHhCccc--cCCCcEE
Confidence 99999999999999987421 112222322 22 23789999999999976531 122322221111 1122457
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++++||++|. |++++++.+.+
T Consensus 137 ~~~~Sa~~~~----------gi~~l~~~l~~ 157 (158)
T cd04151 137 IFKTSAIKGE----------GLDEGMDWLVN 157 (158)
T ss_pred EEEeeccCCC----------CHHHHHHHHhc
Confidence 9999999998 99999998864
No 400
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.58 E-value=9.6e-15 Score=185.52 Aligned_cols=144 Identities=24% Similarity=0.340 Sum_probs=112.1
Q ss_pred ecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH------HHhh--ccccCEEEEEE
Q psy1758 76 GHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM------RARG--AKVTDIVVLVV 147 (1527)
Q Consensus 76 G~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~------~~~~--~~~aD~~IlVv 147 (1527)
|.+|+|||||+|+|++.....++.+|+|++.....+.+++.++++|||||+++|... ...+ ...+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 899999999999999998888889999999998888898889999999999877542 2222 24789999999
Q ss_pred eCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH-HHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 148 AADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI-KQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 148 da~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~-~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
|+++ .+++.....++...++|+++|+||+|+.+...... .+.+.+ .+ .+|++++||++|+|++++++.+
T Consensus 81 Dat~--ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~------~l--g~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 81 DASN--LERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEE------RL--GVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred cCCc--chhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHH------Hc--CCCEEEEECCCCCCHHHHHHHH
Confidence 9987 23445555566678999999999999854221111 111211 12 2589999999999999999999
Q ss_pred HHH
Q psy1758 227 SLQ 229 (1527)
Q Consensus 227 ~~~ 229 (1527)
...
T Consensus 151 ~~~ 153 (591)
T TIGR00437 151 RKA 153 (591)
T ss_pred HHH
Confidence 754
No 401
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=99.58 E-value=9.5e-15 Score=140.77 Aligned_cols=94 Identities=59% Similarity=1.031 Sum_probs=90.7
Q ss_pred CceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEe
Q psy1758 243 AKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVI 322 (1527)
Q Consensus 243 ~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~ 322 (1527)
++++|+|+..++++|++++++|++|+|++||++++|..++|||+|.+.+|+.+++|+|++++.+.||++.|.+||.|+++
T Consensus 1 a~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~GkVr~~~d~~g~~v~~a~Ps~~v~i~g~~~~p~aGd~~~~~ 80 (95)
T cd03701 1 AEGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTPVEILGLKDVPKAGDGVLVV 80 (95)
T ss_pred CeEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCccceEEEEECCCCCCccccCCCCCEEEeeecCCccCCCEEEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhh
Q psy1758 323 LNEKKAREIGLFRQ 336 (1527)
Q Consensus 323 ~~e~~a~~~~~~~~ 336 (1527)
.++++|++++++|+
T Consensus 81 ~~e~~a~~~~~~r~ 94 (95)
T cd03701 81 ASEKEAKEIGSYRL 94 (95)
T ss_pred CCCHHHHHhhHhhc
Confidence 99999999987764
No 402
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.58 E-value=1.3e-14 Score=155.04 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=110.0
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|++++|||||+++|++..-.. ...+..|.+.......+...+..++||||||+..|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 379999999999999999998652110 112333444444445555556789999999999998888
Q ss_pred HHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1003 ERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
...++.+|++++|+|+++.. ..+...++..+... ++|+++++||+|+..... ...++....... ..++
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~ 139 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQ-VSTEEAQEYADE-------NGLL 139 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCc-CCHHHHHHHHHH-------cCCE
Confidence 88889999999999998642 22333444444443 478899999999874321 112222222221 2357
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++++||++|. |+.++++.+.+.+|
T Consensus 140 ~~~~Sa~~~~----------~v~~l~~~l~~~l~ 163 (163)
T cd01860 140 FFETSAKTGE----------NVNELFTEIAKKLP 163 (163)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHhC
Confidence 9999999998 99999999998874
No 403
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.58 E-value=4.6e-15 Score=140.19 Aligned_cols=78 Identities=50% Similarity=0.879 Sum_probs=74.8
Q ss_pred EeEEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhhhhhh
Q psy1758 474 GLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIENQIQR 551 (1527)
Q Consensus 474 g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~~i~~ 551 (1527)
|+|+|+++|++++.|+||||+|++|.+++|+.++|+|+++++|+|+|.||+|++++|+++.+|+|||+.++.+++|++
T Consensus 1 g~~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~d~~~ 78 (84)
T cd03692 1 GEAEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFNDIKV 78 (84)
T ss_pred CEEEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcccCCC
Confidence 789999999998888999999999999999999999999999999999999999999999999999999998887775
No 404
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.57 E-value=1.1e-14 Score=159.28 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=105.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEE-EecCeEEEEEeCCCCCCchHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI-EYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~-~~~~~~iniiDTPGh~df~~e 1001 (1527)
.+|+++|++|+|||||+++++..... .. ....|.+........ .+.+..+++|||||+..|...
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~--------------~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NT--------------VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-Cc--------------CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH
Confidence 47999999999999999999754211 00 011233322221111 335678999999999999888
Q ss_pred HHHHHHhcCEEEEEEeCCCCCCh-hHH----HHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMP-QTR----FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~-qt~----~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
+...++.+|++|+|+|+++.-.. ... .++......++|+++|+||+|+...... +++...+ .+........
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~---~~~~~~~-~~~~~~~~~~ 144 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV---SEVEKLL-ALHELSASTP 144 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCH---HHHHHHh-CccccCCCCc
Confidence 88889999999999999874211 111 1222233457999999999998653221 2222211 1111111123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++++++||++|. |++++++.|.+.+-
T Consensus 145 ~~~~~~SA~~~~----------gi~~l~~~l~~~l~ 170 (183)
T cd04152 145 WHVQPACAIIGE----------GLQEGLEKLYEMIL 170 (183)
T ss_pred eEEEEeecccCC----------CHHHHHHHHHHHHH
Confidence 578999999998 99999999987763
No 405
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=5.8e-14 Score=146.25 Aligned_cols=158 Identities=21% Similarity=0.303 Sum_probs=125.7
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccc-------cccCCc---eeEEEEEEEEEeCC-eEEEEEeCCChhhHHHHHH
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVV-------FSEAGG---ITQHIGAYNVVTNH-GSITFLDTPGHEAFTAMRA 134 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-------~~~~~g---iT~~~~~~~~~~~~-~~i~~iDTPG~e~f~~~~~ 134 (1527)
..+..+|++.|+.++||||++.+++..... .....+ +|.......+...+ ..+.++|||||++|.-|+.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 356789999999999999999999876531 111223 67766666676666 7899999999999999999
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcC-CCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG-VPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~-vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
..++.++++|+++|.+.+......+.+......+ +|++|++||.|+.++.+.+...++..... ...|+++++|
T Consensus 87 ~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~------~~~~vi~~~a 160 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL------LSVPVIEIDA 160 (187)
T ss_pred HHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc------CCCceeeeec
Confidence 9999999999999999977766677777777777 89999999999998765544444433321 2469999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
..++|..+.++.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999998888643
No 406
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.57 E-value=2.2e-14 Score=153.26 Aligned_cols=156 Identities=21% Similarity=0.278 Sum_probs=103.6
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+|+|||||++++++........+.. +... .....+......+++|||||+.+|...+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI--------------EDSY-TKQCEIDGQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc--------------cceE-EEEEEECCEEEEEEEEECCCCcchhHHH
Confidence 489999999999999999998653211111110 0000 1111222233578999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...++.+|++++|+|+++....+. ..++.... ..++|+++|+||+|+...... ..++...... ...+
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-~~~~~~~~~~-------~~~~ 139 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKV-SREEGQELAR-------KLKI 139 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccccee-cHHHHHHHHH-------HcCC
Confidence 999999999999999987432221 22222222 247899999999998654311 1112222111 1245
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
|++++||++|. |++++++.+++.+
T Consensus 140 ~~~~~Sa~~~~----------~i~~l~~~l~~~~ 163 (164)
T cd04145 140 PYIETSAKDRL----------NVDKAFHDLVRVI 163 (164)
T ss_pred cEEEeeCCCCC----------CHHHHHHHHHHhh
Confidence 79999999998 9999999998754
No 407
>KOG0091|consensus
Probab=99.57 E-value=5.7e-15 Score=148.39 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=112.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC---eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH---GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~---~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..+..++|++-+|||||+..++.+.++.-..|+...|+....++... .++++|||+|||+|.+.+..+++++-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 45789999999999999999999998776677777777665555433 278999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHH-HHHH---H-cCCC-EEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTREAI-AHAK---I-SGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i-~~~~---~-~~vp-iIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|.++...-.-.+.| ..+. . ...+ +.+|+.|+|+..... +..+..+. ..... ...|+++||++|.||
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq--Vt~EEaEk--lAa~h--gM~FVETSak~g~NV 161 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ--VTAEEAEK--LAASH--GMAFVETSAKNGCNV 161 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc--ccHHHHHH--HHHhc--CceEEEecccCCCcH
Confidence 9999985433332222 2221 1 2233 679999999975221 11111111 11112 247999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
++.|+.|...
T Consensus 162 eEAF~mlaqe 171 (213)
T KOG0091|consen 162 EEAFDMLAQE 171 (213)
T ss_pred HHHHHHHHHH
Confidence 9999999743
No 408
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.56 E-value=1.8e-14 Score=186.90 Aligned_cols=152 Identities=22% Similarity=0.293 Sum_probs=115.8
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH-
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE- 1001 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e- 1001 (1527)
.+|+++||+|+|||||+|+|++... .+....|+|++.+...+.+++++++++||||+.+|...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~----------------~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~ 67 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ----------------RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTIS 67 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCCceEeeEEEEEEcCceEEEEEECCCcccccccc
Confidence 5899999999999999999975411 11234799999999999999999999999999888532
Q ss_pred -------H--HHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-ChhhhHHHHHHHHhhhc
Q psy1758 1002 -------V--ERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVDATFDLFDKLC 1069 (1527)
Q Consensus 1002 -------v--~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~v~~~~~~~~~~l~ 1069 (1527)
. ...+ ..+|++++|+|+++. .+....+.++.+.++|+++|+||+|+.+. ......+++.+
T Consensus 68 ~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~------ 139 (772)
T PRK09554 68 SQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSA------ 139 (772)
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHH------
Confidence 1 1122 378999999999874 33445667788899999999999998643 22222233322
Q ss_pred ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1070 ~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+++|++++||++|. |++++.+.+.+..+
T Consensus 140 ----~LG~pVvpiSA~~g~----------GIdeL~~~I~~~~~ 168 (772)
T PRK09554 140 ----RLGCPVIPLVSTRGR----------GIEALKLAIDRHQA 168 (772)
T ss_pred ----HhCCCEEEEEeecCC----------CHHHHHHHHHHhhh
Confidence 235689999999998 99999999877653
No 409
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.56 E-value=2e-14 Score=153.36 Aligned_cols=155 Identities=20% Similarity=0.164 Sum_probs=106.2
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++++|||||+++|+........ ....|.........+......++||||||+.+|.....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS--------------QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC--------------CCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHH
Confidence 7999999999999999999865221111 11122333333333333346789999999999999889
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHH-HHHH---HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~---~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..++.+|++++|+|++++...+....| .... ..++|+++|.||+|+...+. ...++....... ..+++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~~ 139 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE-VTFLEASRFAQE-------NGLLF 139 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhcc-CCHHHHHHHHHH-------cCCEE
Confidence 999999999999999986544333233 3332 24789999999999865321 112222222221 12579
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
+.+||++|. |++++++.+.+.
T Consensus 140 ~~~Sa~~~~----------~i~~~~~~~~~~ 160 (161)
T cd04113 140 LETSALTGE----------NVEEAFLKCARS 160 (161)
T ss_pred EEEECCCCC----------CHHHHHHHHHHh
Confidence 999999998 999999998764
No 410
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.56 E-value=4.6e-14 Score=156.14 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=101.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-------CeEEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-------HGSITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-------~~~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
.+|+++|+.++|||||++++.+..+...+.+++..++....+.++ ...+.||||+|++.|..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 379999999999999999999998877777766655554444442 2368899999999999999999999999
Q ss_pred EEEEEeCCCCCcH----HHHHHHHHHH-------------------HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccc
Q psy1758 143 VVLVVAADDGVMP----QTREAIAHAK-------------------ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIP 199 (1527)
Q Consensus 143 ~IlVvda~~g~~~----qt~e~i~~~~-------------------~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~ 199 (1527)
+|+|+|+++.... .|.+.+.... ..++|++||+||+|+.+.........+.....+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 9999999995433 2333232210 1368999999999996532111112222222333
Q ss_pred cccCCCCcEEEeeccCCC
Q psy1758 200 EEYGGASPFISISAKTGV 217 (1527)
Q Consensus 200 ~~~~~~~~v~~iSAktg~ 217 (1527)
.+++ .|.+..++.+..
T Consensus 161 ~~~~--~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGN--AEEINLNCTNGR 176 (202)
T ss_pred HhcC--CceEEEecCCcc
Confidence 3333 467777777653
No 411
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.55 E-value=2.1e-14 Score=152.76 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=106.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++|+|||||+++++... ... ....-|++ ...+.+++..+++|||||+..|.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~~-------------~~~t~~~~----~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VVT-------------TIPTIGFN----VETVEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CCC-------------CCCCcCcc----eEEEEECCEEEEEEECCCChhhHHHHH
Confidence 58999999999999999998653 110 01112232 344667789999999999999988888
Q ss_pred HHHHhcCEEEEEEeCCCC-CChhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEG-PMPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G-~~~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..+..+|++++|+|++.+ ...+....+.... ..+.|+++|+||+|+...+. .+++...+.... .....+|
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~~~~~~~~~~~--~~~~~~~ 136 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS---VSELIEKLGLEK--ILGRRWH 136 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC---HHHHHHhhChhh--ccCCcEE
Confidence 899999999999999975 2223333333332 35789999999999976441 223333221111 1123468
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++.+||++|. |++++++.|..
T Consensus 137 ~~~~Sa~~~~----------gv~~~~~~l~~ 157 (158)
T cd00878 137 IQPCSAVTGD----------GLDEGLDWLLQ 157 (158)
T ss_pred EEEeeCCCCC----------CHHHHHHHHhh
Confidence 9999999998 99999998864
No 412
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.54 E-value=1.9e-14 Score=136.12 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=76.9
Q ss_pred ceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecc
Q psy1758 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 1201 (1527)
Q Consensus 1122 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~ 1201 (1527)
|.++|||+++|+|.|+++++||++|+|++||.|.+... ....+|.+|+.++|.++.++++|.||||++++|++++.
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~ 76 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNT----GKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTR 76 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCC----CCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcc
Confidence 57899999999999999999999999999999998755 23578999999999999999999999999999999999
Q ss_pred cCCeeeC
Q psy1758 1202 IGSTICD 1208 (1527)
Q Consensus 1202 iGdTi~~ 1208 (1527)
+|||||.
T Consensus 77 ~Gdtl~~ 83 (83)
T cd04092 77 TGDTLVT 83 (83)
T ss_pred cCCEEeC
Confidence 9999974
No 413
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.54 E-value=2e-14 Score=158.02 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=108.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|+.|+|||||+++|.... +... ..|+......+.+.+..++++||||+.+|...
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~--~~~~-----------------~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~ 79 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDR--LAQH-----------------VPTLHPTSEELTIGNIKFKTFDLGGHEQARRL 79 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC--Cccc-----------------CCccCcceEEEEECCEEEEEEECCCCHHHHHH
Confidence 4689999999999999999997531 1100 11222334567778899999999999999888
Q ss_pred HHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc------
Q psy1758 1002 VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA------ 1070 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~------ 1070 (1527)
+..+++.+|++++|+|+++.- .......+.... ..+.|+++|+||+|+..+... ++++..+.....
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~ 156 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSE---EELRQALGLYGTTTGKGV 156 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCH---HHHHHHhCcccccccccc
Confidence 888899999999999998642 122222333222 246899999999998654322 333333321110
Q ss_pred ---cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1071 ---TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1071 ---~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
......++++.+||++|. |++++++++.+++
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~----------gv~e~~~~l~~~~ 190 (190)
T cd00879 157 SLKVSGIRPIEVFMCSVVKRQ----------GYGEAFRWLSQYL 190 (190)
T ss_pred cccccCceeEEEEEeEecCCC----------ChHHHHHHHHhhC
Confidence 011123578999999998 9999999997653
No 414
>KOG1191|consensus
Probab=99.54 E-value=2.7e-14 Score=167.57 Aligned_cols=177 Identities=24% Similarity=0.254 Sum_probs=128.6
Q ss_pred hhhhhhcccCcccccccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh---
Q psy1758 51 SFLLNEYNKNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH--- 126 (1527)
Q Consensus 51 ~~~~~~l~~~~~~~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~--- 126 (1527)
+.+..++...+..+....++.|+|+|+||+|||||+|+|.+.+. ++++.+|+|+|.....++.+|.++.+.||+|.
T Consensus 250 d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~ 329 (531)
T KOG1191|consen 250 DDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE 329 (531)
T ss_pred HHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc
Confidence 34455566667778888999999999999999999999998874 89999999999999999999999999999994
Q ss_pred -----hhHHHHHH-hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHc------------CCCEEEEEEcccCCcchhHHH
Q psy1758 127 -----EAFTAMRA-RGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS------------GVPLIVAINKIDKLDINLDRI 188 (1527)
Q Consensus 127 -----e~f~~~~~-~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~------------~vpiIvviNKiDl~~~~~~~~ 188 (1527)
|...-++. ..+..||++++|+|+..+...+.....+.+... ..|++++.||+|+...-....
T Consensus 330 ~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~ 409 (531)
T KOG1191|consen 330 SNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMT 409 (531)
T ss_pred cCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccccc
Confidence 33333333 456899999999999776655555544443322 357899999999865211000
Q ss_pred HHHHhhhccccc-ccC-CCCcEEEeeccCCCChhHHHHHHHHHHH
Q psy1758 189 KQDLISEQVIPE-EYG-GASPFISISAKTGVGINKLLENISLQAE 231 (1527)
Q Consensus 189 ~~~l~~~~~~~~-~~~-~~~~v~~iSAktg~gI~eL~~~l~~~~~ 231 (1527)
... ...+. ... ....+.++|+++++|++.|.+++.....
T Consensus 410 ~~~----~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 410 KIP----VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred CCc----eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 000 00011 111 2234556999999999999999976543
No 415
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.54 E-value=4.5e-14 Score=152.27 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=104.7
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++++|||||+++|.... +.. ....-|.++ ..+.+.+..++||||||+..|...
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~--~~~-------------~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQ--SVT-------------TIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCC--Ccc-------------ccCCcccce----EEEEECCEEEEEEECCCCHHHHHH
Confidence 3689999999999999999996431 110 011123322 234457789999999999999888
Q ss_pred HHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
...+++.+|++|+|+|+++.. +......|..... .+.|+++|.||+|+..... .+++.+.+. +. ......
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~-~~-~~~~~~ 144 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK---PHEIQEKLG-LT-RIRDRN 144 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC---HHHHHHHcC-CC-ccCCCc
Confidence 888899999999999998742 2233333333322 3689999999999865321 233333221 11 111223
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++++++||++|. |++++|++|.+
T Consensus 145 ~~~~~~SAk~g~----------gv~~~~~~l~~ 167 (168)
T cd04149 145 WYVQPSCATSGD----------GLYEGLTWLSS 167 (168)
T ss_pred EEEEEeeCCCCC----------ChHHHHHHHhc
Confidence 578999999998 99999998864
No 416
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.54 E-value=8.3e-14 Score=148.16 Aligned_cols=158 Identities=27% Similarity=0.247 Sum_probs=109.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG- 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~- 1000 (1527)
..+|+++|++|+|||||+++|++..-.. .....+.|.......+...+..+.+|||||+.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 67 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI---------------VSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK 67 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe---------------ccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH
Confidence 3579999999999999999998652111 011122333333344455668899999999876432
Q ss_pred -------HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 1001 -------EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1001 -------ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
.....+..+|++++|+|++++.......++..+...+.|.++|+||+|+... .+ ...+....+...
T Consensus 68 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~-~~~~~~~~~~~~----- 140 (168)
T cd04163 68 LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD-KE-DLLPLLEKLKEL----- 140 (168)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc-HH-HHHHHHHHHHhc-----
Confidence 3445689999999999999875556666667777778999999999998642 12 222222222111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
....|++.+|++++. |++.|++.|.+++
T Consensus 141 ~~~~~~~~~s~~~~~----------~~~~l~~~l~~~~ 168 (168)
T cd04163 141 GPFAEIFPISALKGE----------NVDELLEEIVKYL 168 (168)
T ss_pred cCCCceEEEEeccCC----------ChHHHHHHHHhhC
Confidence 113578999999998 9999999987653
No 417
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.54 E-value=6e-14 Score=149.51 Aligned_cols=153 Identities=19% Similarity=0.168 Sum_probs=108.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~e 1001 (1527)
+|+++|++++|||||+++|+...-.. +..++++.+.....+.+++ .++++|||||+..|...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~ 65 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN----------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc----------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 79999999999999999998652211 2234455555555566655 56899999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHH-HHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKA-LKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~-~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
+...++.+|++++|+|++++...+. ..++... ... +.|+++++||+|+...+ ....++...... ...+
T Consensus 66 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~-~~~~~~~~~~~~-------~~~~ 137 (161)
T cd01861 66 IPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR-QVSTEEGEKKAK-------ELNA 137 (161)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC-ccCHHHHHHHHH-------HhCC
Confidence 9999999999999999987543333 2333332 233 38999999999995332 112222222211 1236
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
+++.+||++|. |++++++.+.+.
T Consensus 138 ~~~~~Sa~~~~----------~v~~l~~~i~~~ 160 (161)
T cd01861 138 MFIETSAKAGH----------NVKELFRKIASA 160 (161)
T ss_pred EEEEEeCCCCC----------CHHHHHHHHHHh
Confidence 78999999998 999999998764
No 418
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.54 E-value=5.8e-14 Score=149.87 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=107.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~e 1001 (1527)
+|+++|++|+|||||+++|+...-. ....+.++.......+.+++ ..+++|||||+..|...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 65 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS----------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 7999999999999999999854211 01112223333334445554 67899999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
....++.+|++++|+|+++....+....| ..... .++|+++|+||+|+...+. ...+....... +..+
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~ 137 (164)
T smart00175 66 TSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ-VSREEAEAFAE-------EHGL 137 (164)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC-CCHHHHHHHHH-------HcCC
Confidence 89999999999999999875443333223 33333 3689999999999865321 01122222111 2346
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+++++||++|. |++++++.|.+.++
T Consensus 138 ~~~e~Sa~~~~----------~i~~l~~~i~~~~~ 162 (164)
T smart00175 138 PFFETSAKTNT----------NVEEAFEELAREIL 162 (164)
T ss_pred eEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 79999999998 99999999988764
No 419
>KOG0459|consensus
Probab=99.54 E-value=2e-14 Score=163.68 Aligned_cols=247 Identities=25% Similarity=0.333 Sum_probs=180.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-------------------------------cccccCCceeEEEEEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-------------------------------VVFSEAGGITQHIGAYNVVTNH 115 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-------------------------------~~~~~~~giT~~~~~~~~~~~~ 115 (1527)
....+++++||+++||||+-..+.... .......|-|...+...++...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 456799999999999999875542110 0112224778888889999999
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-------cHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh--
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-------MPQTREAIAHAKISGVP-LIVAINKIDKLDINL-- 185 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-------~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~-- 185 (1527)
.+++++|+|||..|...+..++++||+.+||+++..+. --||+++...++..++. .|+++||||-+..+.
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 99999999999999999999999999999999997643 24899999999999886 899999999875432
Q ss_pred HH---HHHHHhhhcc-cccccCCCCcEEEeeccCCCChhHHHHHHHH----------HHHHHhhcCCCCCCCceEEEEEe
Q psy1758 186 DR---IKQDLISEQV-IPEEYGGASPFISISAKTGVGINKLLENISL----------QAEILELKAPVTTPAKGVIIESR 251 (1527)
Q Consensus 186 ~~---~~~~l~~~~~-~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~----------~~~~~~~~~~~~~p~~~~v~~~~ 251 (1527)
++ ....+..... .-........++++|..+|.++.+..+..+- +..+.......+.|+...|.+-+
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~Ky 316 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKY 316 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhccCcccccCCCCEEeehhhhc
Confidence 22 2222211111 0001123467999999999999998863331 11222334556778887777766
Q ss_pred ecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCC
Q psy1758 252 LDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSG 316 (1527)
Q Consensus 252 ~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G 316 (1527)
.+ .|+|+.+.+.+|+++.|+.+++-+ +...|.+|+.. ..++..+.||.-+.+ .|+..-. .+|
T Consensus 317 kd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~d-dvE~~~~~pGenvk~rlkgieeedi~~G 383 (501)
T KOG0459|consen 317 KD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSD-DVETDRVAPGENVKLRLKGIEEEDISPG 383 (501)
T ss_pred cc--cceEEEEEecccceecCCeEEEccCCcceEEEEEecc-cceeeeccCCcceEEEecccchhhccCc
Confidence 55 579999999999999999998754 45688889887 678999999987755 4554433 455
No 420
>PRK04213 GTP-binding protein; Provisional
Probab=99.53 E-value=5.8e-14 Score=155.87 Aligned_cols=162 Identities=24% Similarity=0.272 Sum_probs=107.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC---
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD--- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d--- 997 (1527)
...+|+++|++|+|||||+++|.+... ..+..+|+|.... .+.++ .+++|||||+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~--~~~~~--~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPN--HYDWG--DFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCce--EEeec--ceEEEeCCccccccc
Confidence 346899999999999999999975411 1223457777644 33444 689999999633
Q ss_pred --------chHHHHH----HHHhcCEEEEEEeCCCC-----------CChhHHHHHHHHHHcCCccEEEEeccCCCCCCh
Q psy1758 998 --------FGGEVER----ILSMVDNVLLLIDAVEG-----------PMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP 1054 (1527)
Q Consensus 998 --------f~~ev~~----~l~~aD~ailVVDa~~G-----------~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~ 1054 (1527)
|...+.. .+..+|++++|+|+... ..+++..++..+...++|+++|+||+|+.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~- 146 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR- 146 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-
Confidence 2222222 34567899999999642 23355677777777899999999999996544
Q ss_pred hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1055 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1055 ~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
++..+++.+.+. +.........|++++||++| |+++++++|.+.++.-.
T Consensus 147 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~SA~~g-----------gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 147 DEVLDEIAERLG-LYPPWRQWQDIIAPISAKKG-----------GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHHHHHhc-CCccccccCCcEEEEecccC-----------CHHHHHHHHHHhhcCcc
Confidence 233444443332 10011111247899999998 67899999998876543
No 421
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.53 E-value=7e-14 Score=154.37 Aligned_cols=164 Identities=20% Similarity=0.176 Sum_probs=112.6
Q ss_pred ccccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 915 SDENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 915 sq~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
++.+.+..++|+++|++|+|||||+++|+..... .......|.|....... + +..+.||||||
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG 79 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNL--------------ARTSKTPGRTQLINFFE--V-NDKLRLVDLPG 79 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc--------------ccccCCCCceeEEEEEe--c-CCeEEEeCCCC
Confidence 3455567789999999999999999999864211 01122345555443322 2 47899999999
Q ss_pred CCC----------chHHHHHHHHhc---CEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHH
Q psy1758 995 HAD----------FGGEVERILSMV---DNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDA 1060 (1527)
Q Consensus 995 h~d----------f~~ev~~~l~~a---D~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~ 1060 (1527)
+.. |...+..++..+ +++++|+|+..+.......++..+...++|.++++||+|+.... .+...++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~ 159 (196)
T PRK00454 80 YGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKK 159 (196)
T ss_pred CCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHH
Confidence 632 333344445444 67889999988777666666777777899999999999986532 2223333
Q ss_pred HHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1061 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1061 ~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+...+... ..+++++||++|. |++++++.|.+.+.
T Consensus 160 i~~~l~~~-------~~~~~~~Sa~~~~----------gi~~l~~~i~~~~~ 194 (196)
T PRK00454 160 VRKALKFG-------DDEVILFSSLKKQ----------GIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHhc-------CCceEEEEcCCCC----------CHHHHHHHHHHHhc
Confidence 33333211 3578999999998 99999999987764
No 422
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.53 E-value=6.2e-14 Score=172.28 Aligned_cols=257 Identities=18% Similarity=0.169 Sum_probs=158.5
Q ss_pred EEEEEEEEEEeCCe-----EEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccc----------cccccChhH
Q psy1758 806 KIYKITIIDYTIPY-----LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLT----------LDKCLNIDT 870 (1527)
Q Consensus 806 ~i~~~~~~~~~~~~-----~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~----------~~~a~~l~~ 870 (1527)
.|.+.-++.|..|. =.+|++|-.|.++-.-+-+.-.++| .|.-.=|.|| |.+|=.+.+
T Consensus 50 ~iD~~l~~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~g-------~R~A~pGEFT~RAflNGk~DL~qaEav~d 122 (442)
T TIGR00450 50 CKDDELLFKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKSG-------ARLAQPGEFTQRAFLNGKMDLTQAEAINE 122 (442)
T ss_pred EeeeEEEEEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHcC-------CeEcCCchhhHHHHhcCCccHHHHHHHHH
Confidence 35566667787773 4799999999987666666555554 2344445554 444333334
Q ss_pred HHhhhh-----------------------hhhccccCcccccccccceeeeccc-ccceeccCc----ccc--cccccce
Q psy1758 871 IIKYSE-----------------------YERISSLIPIDILLSSFGIIYLSDL-LSKRFLHGQ----NLF--LSDENIY 920 (1527)
Q Consensus 871 l~~~~~-----------------------~~~~~~L~pie~~L~~lP~i~l~d~-~~~~i~nG~----~i~--lsq~~~~ 920 (1527)
|..+.- ...+..+--++..+ +||.-+.... ....+..-. .+. .......
T Consensus 123 lI~a~t~~~~~~A~~~l~G~ls~~~~~~r~~l~~~~a~iea~i-Df~ee~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~ 201 (442)
T TIGR00450 123 LILAPNNKVKDIALNKLAGELDQKIEAIRKSLLQLLAQVEVNI-DYEEDDDEQDSLNQLLLSIIAELKDILNSYKLEKLD 201 (442)
T ss_pred HHhCCCHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHeeEEC-CcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 422110 00111122334444 6666331111 000110000 000 0011223
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+|+|++|+|||||+++|++.... .+....|+|.+.....+.++++.+++|||||+.++..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~a---------------ivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRA---------------IVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD 266 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCc---------------ccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh
Confidence 4578999999999999999999865221 1223478898888888999999999999999987665
Q ss_pred HH--------HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1001 EV--------ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 ev--------~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.+ ..+++.+|++++|+|++.+...+.. ++..+...+.|+++|+||+|+...+. +++.
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~----~~~~---------- 331 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL----EFFV---------- 331 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch----hhhh----------
Confidence 43 2457889999999999987655544 55556556899999999999865311 1111
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.....|++.+||+++ |+..+++.+.+.+
T Consensus 332 ~~~~~~~~~vSak~~-----------gI~~~~~~L~~~i 359 (442)
T TIGR00450 332 SSKVLNSSNLSAKQL-----------KIKALVDLLTQKI 359 (442)
T ss_pred hhcCCceEEEEEecC-----------CHHHHHHHHHHHH
Confidence 112347889999984 6777777766654
No 423
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.53 E-value=5.1e-14 Score=152.74 Aligned_cols=154 Identities=21% Similarity=0.162 Sum_probs=106.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
.++|+++|++|+|||||+++|+... +.. .. .|+......+.+++..+.++||||+..|...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~--~~~-------------~~----~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 75 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE--VVH-------------TS----PTIGSNVEEIVYKNIRFLMWDIGGQESLRSS 75 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--CCC-------------cC----CccccceEEEEECCeEEEEEECCCCHHHHHH
Confidence 4689999999999999999997531 110 01 1222333456777899999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHH-H---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL-K---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~-~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
...++..+|++++|+|++++... .....+.... . .++|+++++||+|+.+... .+++...+.... .....
T Consensus 76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~---~~~i~~~l~~~~--~~~~~ 150 (174)
T cd04153 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTS--IRDHT 150 (174)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccc--ccCCc
Confidence 99999999999999999875321 1222232222 2 3589999999999876421 122222221101 11235
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++++++||++|. |+++++++|.+
T Consensus 151 ~~~~~~SA~~g~----------gi~e~~~~l~~ 173 (174)
T cd04153 151 WHIQGCCALTGE----------GLPEGLDWIAS 173 (174)
T ss_pred eEEEecccCCCC----------CHHHHHHHHhc
Confidence 689999999998 99999998854
No 424
>KOG0097|consensus
Probab=99.53 E-value=4.7e-14 Score=137.84 Aligned_cols=149 Identities=18% Similarity=0.181 Sum_probs=111.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+-.|+|+.|+|||+|+..++...|-..-+.++...++...++..+. ++++|||+|+|+|+.....+++.+.+++.|+
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvy 91 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 91 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEE
Confidence 46789999999999999999999987777777888888877777665 7889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|.+..... .|..-.+.+...+..+++++||.|+.... .++.+. +.++. ...|+++||++|.|++
T Consensus 92 ditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~-------faeen--gl~fle~saktg~nve 162 (215)
T KOG0097|consen 92 DITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKE-------FAEEN--GLMFLEASAKTGQNVE 162 (215)
T ss_pred EehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHH-------HHhhc--CeEEEEecccccCcHH
Confidence 99974332 22222222233344589999999996532 111111 11121 2468999999999999
Q ss_pred HHHHHHH
Q psy1758 221 KLLENIS 227 (1527)
Q Consensus 221 eL~~~l~ 227 (1527)
+.|-.-.
T Consensus 163 dafle~a 169 (215)
T KOG0097|consen 163 DAFLETA 169 (215)
T ss_pred HHHHHHH
Confidence 9775544
No 425
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.53 E-value=3.9e-14 Score=151.51 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=102.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++|+|||||+++++...-.....+.. + +.......+....+.+++|||||+.+|.....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~--------------~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTI--------------E-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCch--------------h-hhEEEEEEECCEEEEEEEEECCCcccchHHHH
Confidence 79999999999999999998652211100000 0 00111122222346789999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++.+|++++|+|+++....+. ...+.... ..+.|+++|.||+|+...+.. ..++...... ....|
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~ 138 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVV-STEEGKELAR-------QWGCP 138 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceE-cHHHHHHHHH-------HcCCE
Confidence 99999999999999987422211 12222222 236899999999998654311 1112221111 12357
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++++||++|. |++++++.+++.+.
T Consensus 139 ~~~~Sa~~~~----------~i~~l~~~l~~~~~ 162 (164)
T smart00173 139 FLETSAKERV----------NVDEAFYDLVREIR 162 (164)
T ss_pred EEEeecCCCC----------CHHHHHHHHHHHHh
Confidence 9999999998 99999999988764
No 426
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.53 E-value=7.6e-14 Score=155.37 Aligned_cols=153 Identities=20% Similarity=0.161 Sum_probs=103.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe-EEEEEeCCCCCCc
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHADF 998 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~iniiDTPGh~df 998 (1527)
+...+|+|+|++|+|||||+++|+...... +...+.|+......+.+.+. .+.+|||||+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYA----------------EDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhcc----------------CCccceeccceeEEEEecCCceEEEeCCCccccC
Confidence 345799999999999999999998652110 11124455555556666654 8999999998542
Q ss_pred -hHHH-------HHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHh
Q psy1758 999 -GGEV-------ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFD 1066 (1527)
Q Consensus 999 -~~ev-------~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~ 1066 (1527)
..++ ...+..+|++++|+|++++...+.. .+...... .++|+++|+||+|+....... ..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~------~~~- 175 (204)
T cd01878 103 LPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE------ERL- 175 (204)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH------HHh-
Confidence 1111 1235689999999999987544332 22333333 368999999999996543211 111
Q ss_pred hhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1067 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1067 ~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.....|++++||++|. |++++++.|...+
T Consensus 176 ------~~~~~~~~~~Sa~~~~----------gi~~l~~~L~~~~ 204 (204)
T cd01878 176 ------EAGRPDAVFISAKTGE----------GLDELLEAIEELL 204 (204)
T ss_pred ------hcCCCceEEEEcCCCC----------CHHHHHHHHHhhC
Confidence 1124579999999998 9999999987653
No 427
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.53 E-value=7e-14 Score=150.35 Aligned_cols=157 Identities=22% Similarity=0.217 Sum_probs=107.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
..++|+++|++|+|||||+++|+.. .+.. .....++.+.....+.+.+ ..+.+|||||+.+|
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~--~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 69 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQG--LFPP--------------GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF 69 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhC--CCCC--------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 4589999999999999999999743 1110 0011222233344455665 45788999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHH---HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKA---LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~---~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.......++.+|++++|+|+.++...+....| ..+ ...++|.++|+||+|+...+ ++..++...+...
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~--~i~~~~~~~~~~~------ 141 (169)
T cd04114 70 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR--EVSQQRAEEFSDA------ 141 (169)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--ccCHHHHHHHHHH------
Confidence 99999999999999999999875433222223 222 22468899999999986432 2222222223221
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...+++.+||++|. |++++++.|.+.+
T Consensus 142 ~~~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 168 (169)
T cd04114 142 QDMYYLETSAKESD----------NVEKLFLDLACRL 168 (169)
T ss_pred cCCeEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 12468999999998 9999999987653
No 428
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.53 E-value=2.2e-14 Score=150.75 Aligned_cols=149 Identities=30% Similarity=0.334 Sum_probs=105.5
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~ 1000 (1527)
.+|+++|++|+|||||+++|+... .+.+..+++|.......+.+++ +.+.+|||||+.+|..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK----------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC----------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 589999999999999999998652 1123335677766666677777 7899999999999987
Q ss_pred HHHHHHHhcCEEEEEEeCCCC-------CChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G-------~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
........++.++.++|.... ...+...++..+.. +.|.++++||+|+...+ ...+....+..+.
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~---- 137 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK---LKTHVAFLFAKLN---- 137 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch---hhHHHHHHHhhcc----
Confidence 777667777777777666543 22333334444433 88999999999997654 2233333332222
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHH
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAI 1107 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i 1107 (1527)
..|++++||++|. |+..+++.|
T Consensus 138 --~~~~~~~sa~~~~----------gv~~~~~~l 159 (161)
T TIGR00231 138 --GEPIIPLSAETGK----------NIDSAFKIV 159 (161)
T ss_pred --CCceEEeecCCCC----------CHHHHHHHh
Confidence 2368999999998 999998876
No 429
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.52 E-value=6.1e-14 Score=151.34 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=106.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|..++|||||+++|.... +... ..|+......+.+++..+++|||||+.+|...+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~~~-----------------~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FMQP-----------------IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CCCc-----------------CCcCceeEEEEEECCEEEEEEECCCChhcchHHH
Confidence 48899999999999999997541 1110 1122222234677889999999999999999888
Q ss_pred HHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++.+|++++|+|+++.. .......+....+ .+.|+++|.||+|+.+... .+++...+ .+........++
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~-~~~~~~~~~~~~ 137 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALS---VEEMTELL-SLHKLCCGRSWY 137 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCC---HHHHHHHh-CCccccCCCcEE
Confidence 9999999999999998732 1222333333332 2478999999999965422 22233222 111100111346
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
++++||++|. |++++|++|.+.++.
T Consensus 138 ~~~~Sa~~g~----------gv~~~f~~l~~~~~~ 162 (169)
T cd04158 138 IQGCDARSGM----------GLYEGLDWLSRQLVA 162 (169)
T ss_pred EEeCcCCCCC----------CHHHHHHHHHHHHhh
Confidence 7889999998 999999999887653
No 430
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.52 E-value=4.9e-14 Score=151.83 Aligned_cols=160 Identities=21% Similarity=0.290 Sum_probs=107.1
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+++|||||+++|... +.. ......|.+ ...+.++++.++++||||+..|...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~------------~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK------------KVAPTVGFT----PTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc------------cccCcccce----EEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999743 110 001112332 345677889999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccccccCC
Q psy1758 1004 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
.+++.+|++|+|+|+++.- .......+..+.. .++|+++|+||+|+++++ ..++.+.+. +..+. ......+
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~--l~~~~-~~~~~~~ 138 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLS--LEKLV-NENKSLC 138 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcC--ccccc-CCCCceE
Confidence 9999999999999998742 2223334444332 478999999999998765 232332211 11111 1112346
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
+++++||++|.+.. ...|+.+-|++|..
T Consensus 139 ~~~~~Sa~~g~~~~----~~~g~~~~~~wl~~ 166 (167)
T cd04161 139 HIEPCSAIEGLGKK----IDPSIVEGLRWLLA 166 (167)
T ss_pred EEEEeEceeCCCCc----cccCHHHHHHHHhc
Confidence 78999999994211 11278888888753
No 431
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.52 E-value=5.8e-14 Score=153.74 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=108.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|.+|+|||||+++|.... +... .. |..+....+.+++.+++++||||+..+..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~--~~~~-------------~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDR--LAQH-------------QP----TQHPTSEELAIGNIKFTTFDLGGHQQARR 76 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCC--Cccc-------------CC----ccccceEEEEECCEEEEEEECCCCHHHHH
Confidence 34689999999999999999997541 1100 11 22222345667789999999999999988
Q ss_pred HHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc----
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT---- 1071 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~---- 1071 (1527)
.+..++..+|++++|+|+++.. ..+....+..+. ..+.|+++|+||+|++.+.. .+++.+.+.-....
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~---~~~i~~~l~l~~~~~~~~ 153 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAAS---EDELRYALGLTNTTGSKG 153 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCC---HHHHHHHcCCCccccccc
Confidence 8889999999999999998742 222333333332 25789999999999975422 22333333211100
Q ss_pred -ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1072 -EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1072 -~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
.....+-++++||++|. |+++++++|.+.
T Consensus 154 ~~~~~~~~i~~~Sa~~~~----------g~~~~~~wl~~~ 183 (184)
T smart00178 154 KVGVRPLEVFMCSVVRRM----------GYGEGFKWLSQY 183 (184)
T ss_pred ccCCceeEEEEeecccCC----------ChHHHHHHHHhh
Confidence 01123458999999998 999999999764
No 432
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=1.1e-13 Score=164.27 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=113.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCC-
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHAD- 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~d- 997 (1527)
.-+..|+|+|.+|+|||||+++|+.....+. ...++|+.+....+.+ ++..+.++||||..+
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va----------------~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIA----------------DYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccC----------------CCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 3456899999999999999999986522222 2246788888888888 567899999999753
Q ss_pred ------chHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHH
Q psy1758 998 ------FGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065 (1527)
Q Consensus 998 ------f~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~ 1065 (1527)
+.....+.+..+|++|+|+|+++.. ..+...+...+.. .+.|.++|+||+|+.++. ....+....+
T Consensus 220 a~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~--~~~~~~~~~~ 297 (335)
T PRK12299 220 ASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE--EEREKRAALE 297 (335)
T ss_pred CCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch--hHHHHHHHHH
Confidence 4556677788899999999998642 2233333344433 368999999999987543 1121111111
Q ss_pred hhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1066 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1066 ~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
. ....++++++||+++. |+++|+++|.+.++.
T Consensus 298 ~------~~~~~~i~~iSAktg~----------GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 298 L------AALGGPVFLISAVTGE----------GLDELLRALWELLEE 329 (335)
T ss_pred H------HhcCCCEEEEEcCCCC----------CHHHHHHHHHHHHHh
Confidence 1 1123579999999998 999999999887754
No 433
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.52 E-value=8.8e-14 Score=149.86 Aligned_cols=155 Identities=20% Similarity=0.224 Sum_probs=102.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~e 1001 (1527)
+|+++|++|+|||||+++|+...-.... ....|.+... ..+.+.+ ..+++|||||+.+|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~--------------~~t~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY--------------KATIGADFLT--KEVTVDDKLVTLQIWDTAGQERFQSL 65 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--------------CCccceEEEE--EEEEECCEEEEEEEEeCCChHHHHhH
Confidence 7999999999999999999865211000 0111222222 2233443 56789999999999988
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHH--HHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRK--ALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~--~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
....++.+|++|+|+|+.++...+....|.. ... .++|+++|+||+|+...+. ...+++.......+
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~---- 140 (172)
T cd01862 66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ-VSTKKAQQWCQSNG---- 140 (172)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccc-cCHHHHHHHHHHcC----
Confidence 8889999999999999987532222222211 111 2689999999999974221 11223332222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.++++++||++|. |++.+++.+.+.+
T Consensus 141 --~~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 166 (172)
T cd01862 141 --NIPYFETSAKEAI----------NVEQAFETIARKA 166 (172)
T ss_pred --CceEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 2579999999998 9999999988754
No 434
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.52 E-value=9.4e-14 Score=148.15 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=102.2
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----CeEEEEEeCCCCCCch
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----GTRINIIDTPGHADFG 999 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----~~~iniiDTPGh~df~ 999 (1527)
+|+++|.+++|||||+++|+..... . +..+.+..+.....+.++ ...++||||||+.+|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~--~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT--K--------------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C--------------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH
Confidence 6999999999999999999854211 0 001112222222223332 4689999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHH-HHH--cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRK-ALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~-~~~--~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
......++.+|++++|+|+++....+....|.. ..+ .++|+++|+||+|+...+.. ..++...... ...
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v-~~~~~~~~~~-------~~~ 137 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVI-TNEEAEALAK-------RLQ 137 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCC-CHHHHHHHHH-------HcC
Confidence 999999999999999999987433233223322 222 37999999999998643211 1122222111 124
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
+|++++||++|. |++++++.|...
T Consensus 138 ~~~~~~Sa~~~~----------~v~~l~~~l~~~ 161 (162)
T cd04106 138 LPLFRTSVKDDF----------NVTELFEYLAEK 161 (162)
T ss_pred CeEEEEECCCCC----------CHHHHHHHHHHh
Confidence 589999999998 999999988653
No 435
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.52 E-value=5.5e-14 Score=155.84 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=103.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~e 1001 (1527)
+|+++|+.|+|||||+++++...-.-. . ..++.......+.+++ ..++||||||+.+|...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~----------------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-Y----------------RRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAM 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-C----------------CCchhhheeEEEEECCEEEEEEEEECCCchhhhHH
Confidence 489999999999999999986421100 0 0011111122344445 67899999999999988
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
...++..+|++|+|+|++++-..+ ....+..+. ..++|+++|+||+|+.........++....+. ....
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~------~~~~ 137 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE------LDWN 137 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH------hhcC
Confidence 888899999999999998742222 222222222 24799999999999865311111111111110 1123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+++.+||++|. |++++++++.+.++.+
T Consensus 138 ~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~~ 165 (198)
T cd04147 138 CGFVETSAKDNE----------NVLEVFKELLRQANLP 165 (198)
T ss_pred CcEEEecCCCCC----------CHHHHHHHHHHHhhcc
Confidence 578999999998 9999999999887543
No 436
>KOG0466|consensus
Probab=99.52 E-value=1.3e-14 Score=158.88 Aligned_cols=234 Identities=26% Similarity=0.355 Sum_probs=168.1
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEe---C--------------------------C-
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVT---N--------------------------H- 115 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~---~--------------------------~- 115 (1527)
.++|.-+||+.|||||++.++++-. |...-...+|+..++.+... + +
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 3578889999999999999997754 33334456777776644221 0 0
Q ss_pred -------eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhH
Q psy1758 116 -------GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLD 186 (1527)
Q Consensus 116 -------~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~ 186 (1527)
+.+.|+|+|||+-....+..++...|+++|.+++.+. .++||-|++....-.... ++++-||+|+...+..
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A 197 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQA 197 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHH
Confidence 1377999999999999999999999999999999984 589999999887777665 8899999999875433
Q ss_pred HHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeec--------CCCce
Q psy1758 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLD--------KGKGP 258 (1527)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~--------~~~G~ 258 (1527)
....+... .+.........|++++||.-+.||+-+.+.|+.. ++.+..+...|++.+|+.++.. .-+|.
T Consensus 198 ~eq~e~I~-kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkk--IPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGg 274 (466)
T KOG0466|consen 198 LEQHEQIQ-KFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKK--IPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGG 274 (466)
T ss_pred HHHHHHHH-HHHhccccCCCceeeehhhhccChHHHHHHHHhc--CCCCccccCCCCcEEEEEeeccCCCCchhhcccCc
Confidence 22211111 1111122245699999999999999999999744 3334445567888999988753 45789
Q ss_pred EEEEEeeccEEEeccEEEecc---------------eeeeEeEeeccCCceeeecCCCcceEe
Q psy1758 259 VATVLIQSGTLRCSDIVVAGA---------------SYGRIRSMLNENGKNILEAGPSIPVEI 306 (1527)
Q Consensus 259 v~~~~v~~G~l~~gd~vv~g~---------------~~~kVr~i~~~~g~~v~~a~~~~~v~I 306 (1527)
|+.+.+..|.|++||++.+-+ .+.+|-+++-.+ .+++.|-||--..+
T Consensus 275 vaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~-n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 275 VAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQ-NDLQFAVPGGLIGV 336 (466)
T ss_pred cccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhh-ccceeecCCceeee
Confidence 999999999999999987621 123455554433 35677777654433
No 437
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.52 E-value=1.1e-13 Score=149.05 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=107.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++++........ ....|.+.......+......++||||||+..|...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 69 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI 69 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 358999999999999999999854211110 012244443333333333467999999999999988
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
....++.+|++|+|+|+++...-+....| ..... .+.|+++|.||+|+...+. ...++....... ..+
T Consensus 70 ~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~ 141 (168)
T cd01866 70 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRRE-VSYEEGEAFAKE-------HGL 141 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccC-CCHHHHHHHHHH-------cCC
Confidence 88899999999999999864333333223 23333 3688999999999864321 112223222211 235
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+++++||++|. |++++++.+.+.+
T Consensus 142 ~~~e~Sa~~~~----------~i~~~~~~~~~~~ 165 (168)
T cd01866 142 IFMETSAKTAS----------NVEEAFINTAKEI 165 (168)
T ss_pred EEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 78999999998 9999999887765
No 438
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.52 E-value=1.1e-13 Score=147.09 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=101.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~ 1000 (1527)
.+|+++|.+|+|||||+++|+...-.....+. .+.+. ...+..+ .+.+++|||||+.+|..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t--------------~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~ 64 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT--------------IEDSY---RKQVVIDGETCLLDILDTAGQEEYSA 64 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCc--------------chheE---EEEEEECCEEEEEEEEECCCCcchHH
Confidence 37999999999999999999854211000000 01111 1122333 35688999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+..+++.+|++++|+|.++....+. ...+.... ..++|+++|.||+|+.... ...++...... ..
T Consensus 65 l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~-------~~ 135 (162)
T cd04138 65 MRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART--VSSRQGQDLAK-------SY 135 (162)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce--ecHHHHHHHHH-------Hh
Confidence 99999999999999999986322222 22222332 2478999999999986532 11222222221 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++++||++|. |++++++++.+.+
T Consensus 136 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 161 (162)
T cd04138 136 GIPYIETSAKTRQ----------GVEEAFYTLVREI 161 (162)
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHHh
Confidence 4579999999998 9999999997653
No 439
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.52 E-value=1e-13 Score=164.26 Aligned_cols=157 Identities=22% Similarity=0.269 Sum_probs=110.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCCC-
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD- 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~d- 997 (1527)
.-+-.|+|+|.+|+|||||+++|+.....+. ...++|..+....+.+.+ .++.|+||||+.+
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va----------------~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIA----------------DYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCcccc----------------CCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 4466899999999999999999986532222 223567777777788877 8999999999753
Q ss_pred ------chHHHHHHHHhcCEEEEEEeCCCC----CChhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 998 ------FGGEVERILSMVDNVLLLIDAVEG----PMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 998 ------f~~ev~~~l~~aD~ailVVDa~~G----~~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
+.....+.+..+|++|+|+|+++. +..+...+.+.+.. .+.|.++|+||+|+..+. ..+++.
T Consensus 219 a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~---~~~~~~ 295 (329)
T TIGR02729 219 ASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE---ELAELL 295 (329)
T ss_pred CcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH---HHHHHH
Confidence 344566677889999999999863 22222233333332 368999999999996542 122222
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+.+.+ ...++++++||+++. |+++|++.|.+.+
T Consensus 296 ~~l~~------~~~~~vi~iSAktg~----------GI~eL~~~I~~~l 328 (329)
T TIGR02729 296 KELKK------ALGKPVFPISALTGE----------GLDELLYALAELL 328 (329)
T ss_pred HHHHH------HcCCcEEEEEccCCc----------CHHHHHHHHHHHh
Confidence 22211 123579999999998 9999999998765
No 440
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.51 E-value=1.5e-13 Score=146.78 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=103.1
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|+.++|||||+.+|... .+... ...-|..+ ..+.+....+++|||||+..|...+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~~~~~-------------~pt~g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--EIVTT-------------IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCccc-------------CCCCCcce----EEEEECCEEEEEEECCCCHhHHHHHH
Confidence 6999999999999999999643 11110 11112222 23556788999999999999998888
Q ss_pred HHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
.+++.+|++|+|+|+++.. +.+....|..+.. .+.|++++.||+|+.+... .+++...+. +. ......++
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~-~~-~~~~~~~~ 137 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLG-LH-SLRNRNWY 137 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhC-cc-ccCCCCEE
Confidence 8999999999999998632 2233333433322 2588999999999965422 223333221 11 01122456
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++.+||++|. |+++++++|.+
T Consensus 138 ~~~~Sak~g~----------gv~~~~~~l~~ 158 (159)
T cd04150 138 IQATCATSGD----------GLYEGLDWLSN 158 (159)
T ss_pred EEEeeCCCCC----------CHHHHHHHHhc
Confidence 7899999998 99999998864
No 441
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.51 E-value=1.7e-13 Score=152.41 Aligned_cols=157 Identities=22% Similarity=0.310 Sum_probs=105.2
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEE--eCCeEEEEEeCCChhhHHHHHHhhcccc-CEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVV--TNHGSITFLDTPGHEAFTAMRARGAKVT-DIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~--~~~~~i~~iDTPG~e~f~~~~~~~~~~a-D~~IlV 146 (1527)
++|+++|++|+|||||+++|....+.... +.++.+....... ..+..+.+||||||++|..+...+++.+ +++|+|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V 79 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV 79 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence 57999999999999999999988764443 2333444333332 2356899999999999999999999998 999999
Q ss_pred EeCCCCC--cHHHHHHHH----HHH--HcCCCEEEEEEcccCCcchhHH-HHHHHhhh----------c-----------
Q psy1758 147 VAADDGV--MPQTREAIA----HAK--ISGVPLIVAINKIDKLDINLDR-IKQDLISE----------Q----------- 196 (1527)
Q Consensus 147 vda~~g~--~~qt~e~i~----~~~--~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~----------~----------- 196 (1527)
+|+.+.. .....+.+. ... ..++|+++|+||+|+..+.... +...+..+ .
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~ 159 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSK 159 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999852 122222222 111 2479999999999987643222 22111100 0
Q ss_pred ----------ccccccCCCCcEEEeeccCCC-ChhHHHHHHH
Q psy1758 197 ----------VIPEEYGGASPFISISAKTGV-GINKLLENIS 227 (1527)
Q Consensus 197 ----------~~~~~~~~~~~v~~iSAktg~-gI~eL~~~l~ 227 (1527)
+........+.++++|++.+. |++.+.++|.
T Consensus 160 ~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~ 201 (203)
T cd04105 160 ESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWID 201 (203)
T ss_pred cccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHh
Confidence 000111235678999998876 6888888874
No 442
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.51 E-value=1.1e-13 Score=146.04 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=104.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++++|||||+++|+....... ..+..|.+..............+++|||||+..|.....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN--------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc--------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHH
Confidence 699999999999999999985522111 011223333333333333457899999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..++.+|++++|+|+.+....+. ..++...... ++|.++++||+|..... ....+++.+.... ..+|+
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~-------~~~~~ 139 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR-QVSTEEAQQFAKE-------NGLLF 139 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc-cccHHHHHHHHHH-------cCCeE
Confidence 99999999999999987332222 3334444443 48999999999995221 1122333332221 34689
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHH
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAIL 1108 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~ 1108 (1527)
+.+||++|. |++.+++.|.
T Consensus 140 ~~~sa~~~~----------~i~~~~~~i~ 158 (159)
T cd00154 140 FETSAKTGE----------NVEELFQSLA 158 (159)
T ss_pred EEEecCCCC----------CHHHHHHHHh
Confidence 999999998 9999998875
No 443
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.51 E-value=9.8e-14 Score=148.98 Aligned_cols=158 Identities=21% Similarity=0.178 Sum_probs=104.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+|+|||||+++|+...-... .....|++..............+.||||||+.+|....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--------------FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 4799999999999999999985421100 00112222222222222234679999999999999988
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
...++.+|++++|+|+++...- +....+..+.. .+.|+++|+||+|+...+... .++..+... .+.+|
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~-------~~~~~ 139 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS-SERGRQLAD-------QLGFE 139 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccC-HHHHHHHHH-------HcCCE
Confidence 8999999999999999864222 22233333333 257889999999996543211 122222111 12457
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++.+||++|. |+.+|++.+.+.++
T Consensus 140 ~~~~Sa~~~~----------gv~~l~~~l~~~~~ 163 (165)
T cd01865 140 FFEASAKENI----------NVKQVFERLVDIIC 163 (165)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 9999999998 99999999988764
No 444
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.51 E-value=1.2e-13 Score=166.81 Aligned_cols=160 Identities=19% Similarity=0.256 Sum_probs=114.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCCC--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD-- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~d-- 997 (1527)
-+-.|+|+|.+|+|||||+++|+..... +...+++|+.+....+.+.+ ..+.|+||||..+
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~----------------vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPK----------------VADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCccc----------------ccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 3457999999999999999999865221 23346788888888888875 4699999999754
Q ss_pred -----chHHHHHHHHhcCEEEEEEeCCC----CCChhHHHHHHHHHHc-----CCccEEEEeccCCCCCChhhhHHHHHH
Q psy1758 998 -----FGGEVERILSMVDNVLLLIDAVE----GPMPQTRFVTRKALKL-----GFKPIVVVNKIDRSNARPEWVVDATFD 1063 (1527)
Q Consensus 998 -----f~~ev~~~l~~aD~ailVVDa~~----G~~~qt~~~~~~~~~~-----glp~IvviNKiD~~~a~~~~v~~~~~~ 1063 (1527)
+...+.+.+..+|++++|||++. .+..+...+++.+..+ +.|.++|+||+|+... ++..+.+..
T Consensus 222 ~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~ 299 (390)
T PRK12298 222 SEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKA 299 (390)
T ss_pred cchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHH
Confidence 44566778899999999999872 2333444444544443 6899999999998643 222222222
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
....+. ...+++++||+++. |+++|++.|.+.+|.
T Consensus 300 l~~~~~-----~~~~Vi~ISA~tg~----------GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 300 IVEALG-----WEGPVYLISAASGL----------GVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHhC-----CCCCEEEEECCCCc----------CHHHHHHHHHHHhhh
Confidence 211111 12368999999998 999999999998864
No 445
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.51 E-value=1.2e-13 Score=148.24 Aligned_cols=156 Identities=20% Similarity=0.231 Sum_probs=105.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|.+|+|||||+++++...-.. +....++.+.....+..++ .++++|||||+.+|.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE----------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 3689999999999999999998541110 0111222222333344443 578999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......++.+|++|+|+|+++...- +....+..... .++|.++|.||+|+...+.- ..++...... ..
T Consensus 66 ~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~-------~~ 137 (166)
T cd01869 66 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVV-DYSEAQEFAD-------EL 137 (166)
T ss_pred HHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCC-CHHHHHHHHH-------Hc
Confidence 9888899999999999999873211 22223333333 36899999999998654321 1122222111 22
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++++||++|. |++++++.+.+.+
T Consensus 138 ~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 163 (166)
T cd01869 138 GIPFLETSAKNAT----------NVEQAFMTMAREI 163 (166)
T ss_pred CCeEEEEECCCCc----------CHHHHHHHHHHHH
Confidence 4689999999998 9999999998754
No 446
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1.9e-13 Score=145.91 Aligned_cols=166 Identities=23% Similarity=0.289 Sum_probs=121.7
Q ss_pred cccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC
Q psy1758 916 DENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 995 (1527)
Q Consensus 916 q~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh 995 (1527)
+.|.+....||++|.+|+|||||+|+|+++.... .....+|.|..... |++++ .+.|||.||+
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA--------------rtSktPGrTq~iNf--f~~~~-~~~lVDlPGY 80 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLA--------------RTSKTPGRTQLINF--FEVDD-ELRLVDLPGY 80 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCccee--------------ecCCCCCccceeEE--EEecC-cEEEEeCCCc
Confidence 5566677899999999999999999999863321 12345788876654 44444 3899999995
Q ss_pred C----------CchHHHHHHH---HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHH
Q psy1758 996 A----------DFGGEVERIL---SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDAT 1061 (1527)
Q Consensus 996 ~----------df~~ev~~~l---~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~ 1061 (1527)
- .+...+..++ ....+++++||+.+++....+++++.+...++|++|++||+|+.... ....+..+
T Consensus 81 GyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v 160 (200)
T COG0218 81 GYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKV 160 (200)
T ss_pred ccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHH
Confidence 2 2445556666 34679999999999999999999999999999999999999997643 33444555
Q ss_pred HHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1062 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1062 ~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+.+. .......+ ++..|+.++. |+++|...|.+++-
T Consensus 161 ~~~l~---~~~~~~~~-~~~~ss~~k~----------Gi~~l~~~i~~~~~ 197 (200)
T COG0218 161 AEELK---KPPPDDQW-VVLFSSLKKK----------GIDELKAKILEWLK 197 (200)
T ss_pred HHHhc---CCCCccce-EEEEeccccc----------CHHHHHHHHHHHhh
Confidence 54332 11111011 7888999988 89999999887663
No 447
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.51 E-value=1.4e-13 Score=148.10 Aligned_cols=156 Identities=23% Similarity=0.258 Sum_probs=105.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|.+|+|||||+++++... +... .....|.+. ....+.+++ +.+++|||||+.+|.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~--f~~~------------~~~t~~~~~--~~~~~~~~~~~~~l~l~D~~g~~~~~ 66 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--FNPS------------FISTIGIDF--KIRTIELDGKKIKLQIWDTAGQERFR 66 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc--CCcc------------cccCccceE--EEEEEEECCEEEEEEEEeCCchHHHH
Confidence 4789999999999999999998542 1100 011112222 222334444 578999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......++.+|++|+|+|++++..-+. ...+..... .+.|.++|.||+|+.+.+. ...++...... ..
T Consensus 67 ~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~ 138 (167)
T cd01867 67 TITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRV-VSKEEGEALAD-------EY 138 (167)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccC-CCHHHHHHHHH-------Hc
Confidence 888888999999999999987433222 222222332 3689999999999975321 11222222221 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++.+||++|. |++++|+.+.+.+
T Consensus 139 ~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 164 (167)
T cd01867 139 GIKFLETSAKANI----------NVEEAFFTLAKDI 164 (167)
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 4579999999998 9999999988754
No 448
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.50 E-value=1.2e-13 Score=145.86 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=103.8
Q ss_pred EEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHH
Q psy1758 925 SAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVER 1004 (1527)
Q Consensus 925 IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~ 1004 (1527)
|+|+|++|+|||||+++|....-... . . + |+......+.+++..+.+|||||+..|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~-----------~---~--~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED-----------T---I--P--TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC-----------c---c--C--CCCcceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 79999999999999999975421100 0 0 1 111222335566788999999999999999999
Q ss_pred HHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1005 ILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1005 ~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
++..+|++++|+|+++.. ..+....+..+.. .++|+++|+||+|..+... .+++...+. +.. .....+++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~-~~~-~~~~~~~~ 138 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS---VDELIEQMN-LKS-ITDREVSC 138 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC---HHHHHHHhC-ccc-ccCCceEE
Confidence 999999999999998632 2233333443332 4789999999999875432 122222211 111 11224678
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
+++||++|. |++.++++|.+
T Consensus 139 ~~~Sa~~~~----------gi~~l~~~l~~ 158 (159)
T cd04159 139 YSISCKEKT----------NIDIVLDWLIK 158 (159)
T ss_pred EEEEeccCC----------ChHHHHHHHhh
Confidence 999999998 99999998864
No 449
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.4e-13 Score=169.23 Aligned_cols=153 Identities=24% Similarity=0.295 Sum_probs=118.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH------HHHHHhhc--ccc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF------TAMRARGA--KVT 140 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f------~~~~~~~~--~~a 140 (1527)
..+|+++|+||+|||||+|+|++.+..++..||.|.+.....+.+.++.+.++|+||...+ .....+++ ..+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 3569999999999999999999999999999999999999999999999999999993222 11222333 467
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|++|.|+||++ .+......-++.+.+.|+|+++|++|.....--++..+..+ +.. .+|++++||++|.|++
T Consensus 83 D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~-----~~L--GvPVv~tvA~~g~G~~ 153 (653)
T COG0370 83 DLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLS-----KLL--GVPVVPTVAKRGEGLE 153 (653)
T ss_pred CEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHH-----HHh--CCCEEEEEeecCCCHH
Confidence 99999999997 44455555667789999999999999754211111111111 112 3799999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++++.+....
T Consensus 154 ~l~~~i~~~~ 163 (653)
T COG0370 154 ELKRAIIELA 163 (653)
T ss_pred HHHHHHHHhc
Confidence 9999997554
No 450
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.50 E-value=1.5e-13 Score=142.60 Aligned_cols=149 Identities=22% Similarity=0.273 Sum_probs=105.2
Q ss_pred EEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC--CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN--HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~--~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
++|++|+|||||++++.+..........+..+......... +..+.+|||||+..+.......++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999877622222222244444444432 4579999999999998888888899999999999998
Q ss_pred CCcHHHHHHH-----HHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 152 GVMPQTREAI-----AHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 152 g~~~qt~e~i-----~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
+........+ ......++|+++++||+|+............. . . ......+++++||+++.|+++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~-~--~--~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE-Q--L--AKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH-H--H--HhhcCCcEEEEecCCCCChHHHHHHH
Confidence 6544444332 23345689999999999997643322211000 0 0 01224689999999999999999987
Q ss_pred H
Q psy1758 227 S 227 (1527)
Q Consensus 227 ~ 227 (1527)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 4
No 451
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.50 E-value=3.1e-13 Score=153.28 Aligned_cols=146 Identities=22% Similarity=0.221 Sum_probs=106.0
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh-------HHHHHHhhccccCEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA-------FTAMRARGAKVTDIV 143 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~-------f~~~~~~~~~~aD~~ 143 (1527)
+|+++|.+|+|||||+++|++........+++|.+.....+.+++..+++|||||+.. +.......++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999998766677788888888888888999999999999743 223345678999999
Q ss_pred EEEEeCCCCCc-H--------------------------------------------HH-HHHHHHH-------------
Q psy1758 144 VLVVAADDGVM-P--------------------------------------------QT-REAIAHA------------- 164 (1527)
Q Consensus 144 IlVvda~~g~~-~--------------------------------------------qt-~e~i~~~------------- 164 (1527)
++|+|+++... . .+ ...++..
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999876321 0 00 0001000
Q ss_pred ---------H--HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 165 ---------K--ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 165 ---------~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
. ...+|+++|+||+|+.+.+... .+ ....+++++||++|.|+++|++.+...
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~---~~----------~~~~~~~~~SA~~g~gi~~l~~~i~~~ 224 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD---LL----------ARQPNSVVISAEKGLNLDELKERIWDK 224 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH---HH----------hcCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 0 1125899999999996532111 11 112368999999999999999999754
No 452
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.50 E-value=1.1e-13 Score=141.87 Aligned_cols=134 Identities=29% Similarity=0.388 Sum_probs=98.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCC----hhhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG----HEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----~e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|.++|++++|||||+++|.+...... -|+.+... + .++|||| +..|.......+..||++++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~----KTq~i~~~-----~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK----KTQAIEYY-----D---NTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC----ccceeEec-----c---cEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 699999999999999999998765332 24444322 1 3599999 556666666677899999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC--cchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL--DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~--~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
.|+++... ..--..+...+.|+|-|+||+|+. +++.++..+.+...+. -.+|++|+.+|+||++|.+
T Consensus 71 ~dat~~~~---~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~--------~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 71 QDATEPRS---VFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGV--------KEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred ecCCCCCc---cCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCC--------CCeEEEECCCCcCHHHHHH
Confidence 99998421 111123455678999999999998 5555555555544432 3579999999999999999
Q ss_pred HHH
Q psy1758 225 NIS 227 (1527)
Q Consensus 225 ~l~ 227 (1527)
.|.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 873
No 453
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.50 E-value=9e-14 Score=148.26 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=104.8
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++|+|||||+++|+...... ..++..|.+.......+......+.+|||||+..|.....
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDP--------------DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc--------------ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhH
Confidence 79999999999999999998542211 0122334433333333333346799999999999988888
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHH-HHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++.+|++++|+|+++....+....| ..+. ..+.|.++|+||+|+...... .++...... ...+|
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~--~~~~~~~~~-------~~~~~ 138 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVT--REEGLKFAR-------KHNML 138 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccC--HHHHHHHHH-------HcCCE
Confidence 889999999999999874333322222 2222 246889999999999733211 122222111 13568
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
++++||++|. |++++++.+.+.
T Consensus 139 ~~~~Sa~~~~----------gi~~~~~~~~~~ 160 (161)
T cd01863 139 FIETSAKTRD----------GVQQAFEELVEK 160 (161)
T ss_pred EEEEecCCCC----------CHHHHHHHHHHh
Confidence 9999999998 999999998765
No 454
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.50 E-value=4.8e-13 Score=142.76 Aligned_cols=151 Identities=24% Similarity=0.344 Sum_probs=104.8
Q ss_pred EEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh----------hHHHHHHhhc--
Q psy1758 72 VTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE----------AFTAMRARGA-- 137 (1527)
Q Consensus 72 V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e----------~f~~~~~~~~-- 137 (1527)
|+++|++|+|||||++.+.+... ..+...+.|........ + ..+.+|||||+. .|......++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999995443 34444455655544332 2 289999999942 3444444444
Q ss_pred -cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 138 -KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 138 -~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
...+++++++|.++.......+.+..+...+.|+++++||+|+....... ....+.. .. ..+....+++++||++
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~-~l--~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKK-EL--KLFEIDPPIILFSSLK 155 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHH-HH--HhccCCCceEEEecCC
Confidence 34678999999998776766777777777889999999999996432211 1111111 11 1023346899999999
Q ss_pred CCChhHHHHHHHH
Q psy1758 216 GVGINKLLENISL 228 (1527)
Q Consensus 216 g~gI~eL~~~l~~ 228 (1527)
+.|+.++++.|..
T Consensus 156 ~~~~~~l~~~l~~ 168 (170)
T cd01876 156 GQGIDELRALIEK 168 (170)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999864
No 455
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.50 E-value=2.1e-13 Score=143.33 Aligned_cols=154 Identities=26% Similarity=0.271 Sum_probs=109.8
Q ss_pred EEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-CeEEEEEeCCCCCCchH-----
Q psy1758 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHADFGG----- 1000 (1527)
Q Consensus 927 IiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~iniiDTPGh~df~~----- 1000 (1527)
|+|++|+|||||+++|+..... .....++.|.......+.+. +..+.+|||||+.++..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA---------------IVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc---------------ccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH
Confidence 5899999999999999754211 12233556666555555555 67999999999888653
Q ss_pred --HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1001 --EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1001 --ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
.+...++.+|++++|+|+..+.......++......+.|.++|+||+|+...+.......... .. .......|
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~---~~--~~~~~~~~ 140 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRL---LI--LLLLLGLP 140 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHH---hh--cccccCCc
Confidence 445578999999999999998777666656677778999999999999875432211110000 00 11122468
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
++++||+++. |+.++++++.+.
T Consensus 141 ~~~~sa~~~~----------~v~~l~~~l~~~ 162 (163)
T cd00880 141 VIAVSALTGE----------GIDELREALIEA 162 (163)
T ss_pred eEEEeeeccC----------CHHHHHHHHHhh
Confidence 9999999998 999999998764
No 456
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.50 E-value=7.4e-14 Score=133.07 Aligned_cols=86 Identities=51% Similarity=0.843 Sum_probs=77.6
Q ss_pred ceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecc
Q psy1758 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 1201 (1527)
Q Consensus 1122 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~ 1201 (1527)
|+|+||++++|++.|+++++||++|+|++||+|.+... +++....+|.+|+.++|+++.+++++.||||+++.|++++.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~-~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~ 79 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKR-DGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDIT 79 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcC-CCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCc
Confidence 68999999999999999999999999999999998765 22223478999999999999999999999999999999999
Q ss_pred cCCeeeC
Q psy1758 1202 IGSTICD 1208 (1527)
Q Consensus 1202 iGdTi~~ 1208 (1527)
+||||++
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03691 80 IGDTICD 86 (86)
T ss_pred ccceecC
Confidence 9999963
No 457
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.50 E-value=1.2e-13 Score=147.13 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=101.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCCchHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~df~~ev 1002 (1527)
+|+++|.+|+|||||++++....-. .. ....|.++ ..+.+ .++.+++|||||+..|...+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~--~~-------------~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~~~~ 61 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV--TT-------------IPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMRTVW 61 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc--cc-------------cCccCcce----EEEEeCCceEEEEEECCCCHhHHHHH
Confidence 3899999999999999999864211 00 11122222 12222 35789999999999999888
Q ss_pred HHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...+..+|++|+|+|++++.. ......+.... ..+.|+++|+||+|++.... .+++...+. +........+
T Consensus 62 ~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~-~~~~~~~~~~ 137 (160)
T cd04156 62 KCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFK-LKKYCSDRDW 137 (160)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcC-CcccCCCCcE
Confidence 888999999999999987531 22222222222 15789999999999965422 122222221 1111111345
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
+++++||++|. |++++++.|.+
T Consensus 138 ~~~~~Sa~~~~----------gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTGE----------GLAEAFRKLAS 159 (160)
T ss_pred EEEecccccCC----------ChHHHHHHHhc
Confidence 78999999998 99999998864
No 458
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.50 E-value=6.9e-14 Score=132.35 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=76.8
Q ss_pred ceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecc
Q psy1758 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 1201 (1527)
Q Consensus 1122 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~ 1201 (1527)
|.++||++++|+|.|+++++||++|+|++||.|.+... ....+|.+|+.+.|.++.++++|.||||++++|++++.
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~ 76 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTK----GKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTA 76 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCC----CcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCc
Confidence 57899999999999999999999999999999998764 24578999999999999999999999999999999999
Q ss_pred cCCeeeC
Q psy1758 1202 IGSTICD 1208 (1527)
Q Consensus 1202 iGdTi~~ 1208 (1527)
+||||++
T Consensus 77 ~Gdtl~~ 83 (83)
T cd04088 77 TGDTLCD 83 (83)
T ss_pred cCCEeeC
Confidence 9999974
No 459
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=2.1e-13 Score=167.08 Aligned_cols=158 Identities=19% Similarity=0.213 Sum_probs=112.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC--
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD-- 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d-- 997 (1527)
.-+..|+|+|.+|+|||||+++|+.....+ ...+++|+.+....+.+++.++.|+||||..+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkI----------------adypfTTl~P~lGvv~~~~~~f~laDtPGliega 220 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKI----------------ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGA 220 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccc----------------cccCcccccceEEEEEECCeEEEEEECCCCcccc
Confidence 345689999999999999999998652222 22367888888999999999999999999753
Q ss_pred -----chHHHHHHHHhcCEEEEEEeCCCC-----CChhHHHHHHHH--------------HHcCCccEEEEeccCCCCCC
Q psy1758 998 -----FGGEVERILSMVDNVLLLIDAVEG-----PMPQTRFVTRKA--------------LKLGFKPIVVVNKIDRSNAR 1053 (1527)
Q Consensus 998 -----f~~ev~~~l~~aD~ailVVDa~~G-----~~~qt~~~~~~~--------------~~~glp~IvviNKiD~~~a~ 1053 (1527)
...+..+.+..||++|+|||++.. +..+...+...+ ...+.|.|||+||+|++++.
T Consensus 221 s~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 221 SEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR 300 (500)
T ss_pred chhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence 234556677889999999999741 222222211122 12468999999999997542
Q ss_pred hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+..+.+...+.. ..+|++++||+++. |+++|+++|.+.+.
T Consensus 301 --el~e~l~~~l~~-------~g~~Vf~ISA~tge----------GLdEL~~~L~ell~ 340 (500)
T PRK12296 301 --ELAEFVRPELEA-------RGWPVFEVSAASRE----------GLRELSFALAELVE 340 (500)
T ss_pred --HHHHHHHHHHHH-------cCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 233333332221 24689999999998 99999998887663
No 460
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.50 E-value=1.9e-13 Score=148.44 Aligned_cols=156 Identities=13% Similarity=0.146 Sum_probs=107.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|.+++|||||+.+|... .+.. ..+..|.. ...+.+++..+.||||||+..|...
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~--~~~~-------------~~~t~~~~----~~~~~~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLG--ESVT-------------TIPTIGFN----VETVTYKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------cCCccccc----eEEEEECCEEEEEEECCCChhhHHH
Confidence 368999999999999999999632 1110 01112222 2234567889999999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
+...++.+|++|+|+|+++.. .......+..+.. .++|+++|.||+|+.++... +++.+.+. +.. .....
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~-~~~-~~~~~ 148 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---AEITEKLG-LHS-IRDRN 148 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---HHHHHHhC-ccc-cCCCc
Confidence 889999999999999998632 2333444444432 35799999999999765322 23333221 111 11123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+.++++||++|. |+++++++|.+.+
T Consensus 149 ~~~~~~Sa~~g~----------gv~e~~~~l~~~~ 173 (175)
T smart00177 149 WYIQPTCATSGD----------GLYEGLTWLSNNL 173 (175)
T ss_pred EEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 457789999998 9999999997764
No 461
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.50 E-value=8.8e-14 Score=150.32 Aligned_cols=150 Identities=22% Similarity=0.268 Sum_probs=102.1
Q ss_pred EEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-CeEEEEEeCCCCCC-------c
Q psy1758 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHAD-------F 998 (1527)
Q Consensus 927 IiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~iniiDTPGh~d-------f 998 (1527)
|+|++|+|||||+++|+.... ......+.|+.+....+.++ +..+++|||||+.+ +
T Consensus 1 iiG~~~~GKStll~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP----------------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc----------------cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 589999999999999986521 11223566777777777888 89999999999743 2
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCC-----Ch--hHHHHHHHHH----------HcCCccEEEEeccCCCCCChhhhHHHH
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGP-----MP--QTRFVTRKAL----------KLGFKPIVVVNKIDRSNARPEWVVDAT 1061 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~-----~~--qt~~~~~~~~----------~~glp~IvviNKiD~~~a~~~~v~~~~ 1061 (1527)
...+.+.+..+|++++|+|+.+.. .+ +...+...+. ..++|.++|+||+|+...+. .....
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~ 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE--LEEEL 142 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH--HHHHH
Confidence 334566788899999999998763 22 2222222222 14789999999999975432 11110
Q ss_pred HHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1062 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1062 ~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
.... ......+++++||++|. |++++++.+...
T Consensus 143 ~~~~------~~~~~~~~~~~Sa~~~~----------gl~~l~~~l~~~ 175 (176)
T cd01881 143 VREL------ALEEGAEVVPISAKTEE----------GLDELIRAIYEL 175 (176)
T ss_pred HHHH------hcCCCCCEEEEehhhhc----------CHHHHHHHHHhh
Confidence 0000 11123579999999998 999999988654
No 462
>KOG0075|consensus
Probab=99.50 E-value=1.1e-13 Score=136.97 Aligned_cols=157 Identities=22% Similarity=0.249 Sum_probs=115.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
..++++|-.++|||||+|.+..+.+...- +.|+.+....++-++..+.+||.||+..|..|+.++++.++++++|+|+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edm--iptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDa 98 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDA 98 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhh--cccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeec
Confidence 45899999999999999987766554333 3355566677777777899999999999999999999999999999999
Q ss_pred CCCC-cHHHHHHHH----HHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 150 DDGV-MPQTREAIA----HAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 150 ~~g~-~~qt~e~i~----~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
.+.- .+..++.+. .....++|++|.+||.|++++-......+ ..+. ..-....+-+|.+||++..||+.+.+
T Consensus 99 ad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~--rmgL-~sitdREvcC~siScke~~Nid~~~~ 175 (186)
T KOG0075|consen 99 ADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIE--RMGL-SSITDREVCCFSISCKEKVNIDITLD 175 (186)
T ss_pred CCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHH--HhCc-cccccceEEEEEEEEcCCccHHHHHH
Confidence 9822 222333333 33446899999999999987532222111 1111 11112346799999999999999999
Q ss_pred HHHHHHH
Q psy1758 225 NISLQAE 231 (1527)
Q Consensus 225 ~l~~~~~ 231 (1527)
+|..+..
T Consensus 176 Wli~hsk 182 (186)
T KOG0075|consen 176 WLIEHSK 182 (186)
T ss_pred HHHHHhh
Confidence 9987643
No 463
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.49 E-value=1.7e-13 Score=147.48 Aligned_cols=155 Identities=18% Similarity=0.264 Sum_probs=103.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+|+|||||+++++... +.. ......|..+.........+...+.+|||||+.+|.....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE--FEK------------KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccH
Confidence 79999999999999999998441 110 0011122332222222233456899999999999988777
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVT-RKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
..+..+|++|+|+|++++..-+....| ..+... ++|+++|.||+|+...... .+... +.. ...++++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~---~~~~~-~~~------~~~~~~~ 137 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK---AKQIT-FHR------KKNLQYY 137 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCC---HHHHH-HHH------HcCCEEE
Confidence 888999999999999875433332223 333322 6999999999998743221 11111 111 1235799
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+||++|. |++.+++.+.+.+.
T Consensus 138 e~Sa~~~~----------~v~~~f~~l~~~~~ 159 (166)
T cd00877 138 EISAKSNY----------NFEKPFLWLARKLL 159 (166)
T ss_pred EEeCCCCC----------ChHHHHHHHHHHHH
Confidence 99999998 99999999987763
No 464
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.49 E-value=1.1e-13 Score=165.35 Aligned_cols=150 Identities=20% Similarity=0.196 Sum_probs=104.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCC-CCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGH-ADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh-~df 998 (1527)
...+|+|+|++|+|||||+|+|++.. . ..+...|.|+++....+.+ ++..+.||||||. .+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~---------------~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-V---------------YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-e---------------eeccCCccccCCEEEEEEeCCCceEEEEecCcccccC
Confidence 44689999999999999999998642 1 1122346777777777888 5789999999997 332
Q ss_pred hHH-------HHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhh
Q psy1758 999 GGE-------VERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 999 ~~e-------v~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~ 1067 (1527)
..+ +...+..||++|+|+|++++...+.. .+...+.. .+.|+++|+||+|+... ..+ ... .
T Consensus 252 ~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~v-~~~---~-- 323 (351)
T TIGR03156 252 PHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PRI-ERL---E-- 323 (351)
T ss_pred CHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--HhH-HHH---H--
Confidence 211 22246889999999999986543322 22223333 36899999999998642 111 111 0
Q ss_pred hcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1068 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
. . ..+++++||++|. |+++|++.|.+.
T Consensus 324 -~-~----~~~~i~iSAktg~----------GI~eL~~~I~~~ 350 (351)
T TIGR03156 324 -E-G----YPEAVFVSAKTGE----------GLDLLLEAIAER 350 (351)
T ss_pred -h-C----CCCEEEEEccCCC----------CHHHHHHHHHhh
Confidence 0 0 1368999999998 999999998764
No 465
>PLN03118 Rab family protein; Provisional
Probab=99.49 E-value=1.8e-13 Score=153.21 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=106.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+|+|++|+|||||+++|+... +.. .....|.+.......+....+.++||||||+.+|...
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~~-------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VED-------------LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCC-------------cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH
Confidence 4689999999999999999998542 111 1112233332222222223467899999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
...+++.+|++|+|+|+++....+.. ..|..... .++|.++|+||+|+...+.. ..++...... ..
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i-~~~~~~~~~~-------~~ 150 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV-SREEGMALAK-------EH 150 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc-CHHHHHHHHH-------Hc
Confidence 99999999999999999874322222 23432221 35788999999998654321 1112221111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.++++++||++|. |++.+++.+.+.+.
T Consensus 151 ~~~~~e~SAk~~~----------~v~~l~~~l~~~~~ 177 (211)
T PLN03118 151 GCLFLECSAKTRE----------NVEQCFEELALKIM 177 (211)
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3578999999998 99999999998764
No 466
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.49 E-value=2.4e-13 Score=145.56 Aligned_cols=156 Identities=20% Similarity=0.204 Sum_probs=102.1
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++++|||||+++|+...-.- .. ...-|.+.......+......++||||||+.+|.....
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~-------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KY-------------LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CC-------------CCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHH
Confidence 79999999999999999998652110 00 01112222222222333346889999999999998888
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH--------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK--------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~--------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..++.+|++|+|+|+++....+....| ..+.. .+.|+++|+||+|+..... ...++...... .
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~-------~ 139 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA-VSEDEGRLWAE-------S 139 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccc-cCHHHHHHHHH-------H
Confidence 889999999999999874332222222 22222 3578999999999863211 11122221111 1
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++.+||++|. |++++++.+.+.+
T Consensus 140 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~l 166 (168)
T cd04119 140 KGFKYFETSACTGE----------GVNEMFQTLFSSI 166 (168)
T ss_pred cCCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 23579999999998 9999999998754
No 467
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.49 E-value=2e-13 Score=146.57 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=102.5
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+|+|||||+++++... +..... .+ -+.+ ......+..+...+++|||||+.+|....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~--f~~~~~--~t----------~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FRESYI--PT----------IEDT-YRQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCCcC--Cc----------chhe-EEEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 479999999999999999998542 111000 00 0001 11122333455789999999999999888
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+++.+|++|+|+|.++.... ....++....+ .++|+++|.||+|+...+. +..+....+. ...
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~~~~------~~~ 138 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE--VSSNEGAACA------TEW 138 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe--ecHHHHHHHH------HHh
Confidence 8889999999999999875432 23344444433 4689999999999865321 1111111111 112
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
.++++.+||++|. |++++++.|++.
T Consensus 139 ~~~~~e~SA~~g~----------~v~~~f~~l~~~ 163 (165)
T cd04140 139 NCAFMETSAKTNH----------NVQELFQELLNL 163 (165)
T ss_pred CCcEEEeecCCCC----------CHHHHHHHHHhc
Confidence 3578999999998 999999998753
No 468
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.49 E-value=2e-13 Score=149.03 Aligned_cols=156 Identities=16% Similarity=0.182 Sum_probs=107.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|..++|||||+.+|... .+.. ..+..|.++ ..+++++..++||||||+..|...
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~--~~~~-------------~~pt~g~~~----~~~~~~~~~~~i~D~~Gq~~~~~~ 77 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLG--EIVT-------------TIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPL 77 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC--CCcc-------------ccCCcceeE----EEEEECCEEEEEEECCCCHHHHHH
Confidence 358999999999999999999642 1111 112223332 346678899999999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
+...++.+|++|+|+|+++... ...+..+..... .++|+++|.||+|++++.. .+++.+.+. +.. .....
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~l~-l~~-~~~~~ 152 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG-LHS-LRQRH 152 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC---HHHHHHHhC-ccc-cCCCc
Confidence 8889999999999999987421 122222222221 3689999999999976532 233333321 111 11123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+.++++||++|. |+.+++++|.+.+
T Consensus 153 ~~~~~~Sa~~g~----------gv~e~~~~l~~~~ 177 (181)
T PLN00223 153 WYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
T ss_pred eEEEeccCCCCC----------CHHHHHHHHHHHH
Confidence 456789999998 9999999998765
No 469
>PTZ00369 Ras-like protein; Provisional
Probab=99.49 E-value=1.6e-13 Score=150.90 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=105.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++++..... ... ...-|.+. .+...++...+.++||||||+.+|...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~-------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI-DEY-------------DPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-cCc-------------CCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhh
Confidence 358999999999999999999864211 000 00011111 122233334567899999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
+..+++.+|++++|+|+++...- +...++..... .++|+++|.||+|+.+.+.-. .++...... ...
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~-~~~~~~~~~-------~~~ 141 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVS-TGEGQELAK-------SFG 141 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC-HHHHHHHHH-------HhC
Confidence 99999999999999999874321 22222233322 368999999999986543211 111111111 123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+|++.+||++|. |+.++++++++.+.
T Consensus 142 ~~~~e~Sak~~~----------gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 142 IPFLETSAKQRV----------NVDEAFYELVREIR 167 (189)
T ss_pred CEEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 589999999998 99999999987764
No 470
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=2.5e-13 Score=164.77 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=110.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-CeEEEEEeCCCCCC--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHAD-- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~iniiDTPGh~d-- 997 (1527)
-+..|+++|.+|+|||||+++|+.....+. ..+++|+.+....+.+. +..+.|+||||+..
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kIa----------------~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega 220 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKIA----------------NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGA 220 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCccc----------------cCCcceeceEEEEEEEeCCceEEEEECCCCcccc
Confidence 345899999999999999999986532222 23567888888888887 78999999999753
Q ss_pred -----chHHHHHHHHhcCEEEEEEeCCCC----CChhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHH
Q psy1758 998 -----FGGEVERILSMVDNVLLLIDAVEG----PMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFD 1063 (1527)
Q Consensus 998 -----f~~ev~~~l~~aD~ailVVDa~~G----~~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~ 1063 (1527)
+.....+.+..+|++|+|||++.. +..+...+...+.. .++|.+||+||+|++.. .+.++++.+
T Consensus 221 ~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~ 298 (424)
T PRK12297 221 SEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKE 298 (424)
T ss_pred cccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHH
Confidence 344556667789999999999742 22233333344433 37899999999998542 222233322
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
. +. .|++++||+++. |+++|++.|.+.++
T Consensus 299 ~---l~-------~~i~~iSA~tge----------GI~eL~~~L~~~l~ 327 (424)
T PRK12297 299 K---LG-------PKVFPISALTGQ----------GLDELLYAVAELLE 327 (424)
T ss_pred H---hC-------CcEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 1 11 479999999998 99999999988764
No 471
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.49 E-value=1e-13 Score=131.26 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=74.9
Q ss_pred eEEEeeec---cccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec
Q psy1758 1124 LQIISLEY---SSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI 1200 (1527)
Q Consensus 1124 ~~V~~~~~---d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~ 1200 (1527)
++|||+.+ +++.|+++++|||||+|++||.|++... + ..++|++|+.++|.++.++++|.||||++++|++++
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~--~--~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~ 76 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRL--G--KEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNF 76 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCC--C--CEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCc
Confidence 47999999 9999999999999999999999988654 2 257899999999999999999999999999999999
Q ss_pred ccCCeeeC
Q psy1758 1201 CIGSTICD 1208 (1527)
Q Consensus 1201 ~iGdTi~~ 1208 (1527)
.+|||||+
T Consensus 77 ~~Gdtl~~ 84 (85)
T cd03689 77 QIGDTLTE 84 (85)
T ss_pred cccCEeeC
Confidence 99999985
No 472
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.48 E-value=2.1e-13 Score=146.51 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=104.2
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|++++|||||++++.... +... .....|.+.......+....+++.||||||+..|....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~--~~~~------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK--FMAD------------CPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCC------------CCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 589999999999999999997541 1110 00111222222222232234678999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
...++.+|++|+|+|+++...-+.. .++..... .+.|+++|.||+|+...+.. ..++...... ...++
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~ 140 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDV-TYEEAKQFAD-------ENGLL 140 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCc-CHHHHHHHHH-------HcCCE
Confidence 9999999999999999874332222 23333332 35788999999999754311 1222222221 12458
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++.+||++|. |+.++++.+...+
T Consensus 141 ~~e~Sa~~~~----------~i~e~f~~l~~~~ 163 (166)
T cd04122 141 FLECSAKTGE----------NVEDAFLETAKKI 163 (166)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHH
Confidence 9999999998 9999998887643
No 473
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.48 E-value=3.1e-13 Score=150.20 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=103.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---CeEEEEEeCCCCCCchH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~iniiDTPGh~df~~ 1000 (1527)
+|+++|.+++|||||+++|+... +... .....|. +.....+.+. .+.++||||||+..|..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~~~~------------~~~t~~~--d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~ 65 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--FSQH------------YKATIGV--DFALKVIEWDPNTVVRLQLWDIAGQERFGG 65 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC------------CCCceeE--EEEEEEEEECCCCEEEEEEEECCCchhhhh
Confidence 79999999999999999998541 1100 0011122 2222233333 46789999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHH-------HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL-------KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~-------~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.....++.+|++|+|+|.++...-+....| ..+. ..++|+++|.||+|+...+. ...+++.+.....+
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~--- 141 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA-KDGEQMDQFCKENG--- 141 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc-cCHHHHHHHHHHcC---
Confidence 888999999999999999874322222222 2221 14679999999999963211 11223333222211
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
-.+++.+||++|. |++++++++.+.+..
T Consensus 142 ---~~~~~e~Sak~~~----------~v~e~f~~l~~~l~~ 169 (201)
T cd04107 142 ---FIGWFETSAKEGI----------NIEEAMRFLVKNILA 169 (201)
T ss_pred ---CceEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 1368999999998 999999999887643
No 474
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.48 E-value=2.3e-13 Score=145.81 Aligned_cols=156 Identities=21% Similarity=0.239 Sum_probs=105.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|.+++|||||+++|+...-... ..+.++.+.....+..++ ..+++|||||+..|.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 66 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD----------------SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 35899999999999999999985421100 112222222333444444 578999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......++.+|++|+|+|+++....+. ...+..+.+ .++|+++|.||+|+...+. ...++...... ..
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~-~~~~~~~~~~~-------~~ 138 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA-VPTEEAKAFAE-------KN 138 (165)
T ss_pred HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc-CCHHHHHHHHH-------Hc
Confidence 888889999999999999986332222 222333333 2588999999999865431 11222222221 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.++++++||++|. |++.+++.+.+.+
T Consensus 139 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 164 (165)
T cd01868 139 GLSFIETSALDGT----------NVEEAFKQLLTEI 164 (165)
T ss_pred CCEEEEEECCCCC----------CHHHHHHHHHHHh
Confidence 4579999999998 9999999998764
No 475
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.48 E-value=1.5e-13 Score=148.52 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=106.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+|+|++|+|||||+++|....- . ......|+++ ..+.+.+..+.+|||||+..|..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~--~-------------~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~~~ 73 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI--S-------------HITPTQGFNI----KTVQSDGFKLNVWDIGGQRAIRP 73 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC--c-------------ccCCCCCcce----EEEEECCEEEEEEECCCCHHHHH
Confidence 356899999999999999999975411 0 0112234333 34566788999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+...++.+|++++|+|+.+.. ..+....+... ...++|+++++||+|+.+... .+++.+.+. +.. ....
T Consensus 74 ~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~i~~~l~-~~~-~~~~ 148 (173)
T cd04155 74 YWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP---AEEIAEALN-LHD-LRDR 148 (173)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC---HHHHHHHcC-Ccc-cCCC
Confidence 9999999999999999998632 12223233222 235789999999999865431 222333221 111 1112
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
.++++.+||++|. |+++++++|.+
T Consensus 149 ~~~~~~~Sa~~~~----------gi~~~~~~l~~ 172 (173)
T cd04155 149 TWHIQACSAKTGE----------GLQEGMNWVCK 172 (173)
T ss_pred eEEEEEeECCCCC----------CHHHHHHHHhc
Confidence 3568899999998 99999999864
No 476
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.48 E-value=1.9e-13 Score=145.80 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=102.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+|+|||||+++|+...-.-...+.. .| .. .....+....+.+.+|||||+.+|.....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~----~~----------~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTK----AD----------SY-RKKVVLDGEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcc----hh----------hE-EEEEEECCEEEEEEEEECCChhhhhHHHH
Confidence 79999999999999999998542111000000 00 00 11122333456899999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPM-PQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++.+|++++|+|..+.-. ......+.... ..++|+++|+||+|+...+.. ...+...... +..+|
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 138 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQV-SSEEAANLAR-------QWGVP 138 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccccc-CHHHHHHHHH-------HhCCe
Confidence 99999999999999876321 11122222222 257999999999998652111 1112222111 12458
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++++||++|. |++++++.+.+.+
T Consensus 139 ~~~~Sa~~~~----------gi~~l~~~l~~~~ 161 (164)
T cd04139 139 YVETSAKTRQ----------NVEKAFYDLVREI 161 (164)
T ss_pred EEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 9999999998 9999999998764
No 477
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.48 E-value=2.3e-13 Score=146.20 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=104.7
Q ss_pred EEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHH
Q psy1758 925 SAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVER 1004 (1527)
Q Consensus 925 IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~ 1004 (1527)
|+++|..++|||||++++......-. ..+..|. ....+.+++.++.+|||||+.+|...+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~--------------~~pt~g~----~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLES--------------VVPTTGF----NSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc--------------ccccCCc----ceEEEeeCCeEEEEEECCCCcchhHHHHH
Confidence 78999999999999999985421100 0111122 12346677899999999999999999999
Q ss_pred HHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH--cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEE
Q psy1758 1005 ILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 1081 (1527)
Q Consensus 1005 ~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~--~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~ 1081 (1527)
+++.+|++|+|+|+++... ...+..+..+.. .++|+++|.||+|+..++. ..++.+.+. +........++++.
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~-~~~~~~~~~~~~~~ 139 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS---VQEIHKELE-LEPIARGRRWILQG 139 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC---HHHHHHHhC-ChhhcCCCceEEEE
Confidence 9999999999999987432 222333333332 5799999999999976542 223322221 11111233567888
Q ss_pred eccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1082 TSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1082 ~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
+||++.-...+ ..|+.++|+.+++
T Consensus 140 ~Sa~~~~s~~~----~~~v~~~~~~~~~ 163 (164)
T cd04162 140 TSLDDDGSPSR----MEAVKDLLSQLIN 163 (164)
T ss_pred eeecCCCChhH----HHHHHHHHHHHhc
Confidence 99998321111 1189999988764
No 478
>KOG0081|consensus
Probab=99.48 E-value=1.5e-14 Score=144.43 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=110.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC---------e--EEEEEeCCChhhHHHHHHhhccc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH---------G--SITFLDTPGHEAFTAMRARGAKV 139 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~---------~--~i~~iDTPG~e~f~~~~~~~~~~ 139 (1527)
+...+|++|+||||++.+++...|...-..+..+|+....+.++. . .+++|||+|||+|.++....++.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRD 90 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRD 90 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHh
Confidence 456789999999999999999888766666666777665554421 1 47899999999999999999999
Q ss_pred cCEEEEEEeCCCCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 140 TDIVVLVVAADDGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 140 aD~~IlVvda~~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
|=+.+|++|.++.- .-..+.++.+++ ..+..+|+++||+|+.+.......+. ......++ .|+|++||-
T Consensus 91 AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa----~~La~kyg--lPYfETSA~ 164 (219)
T KOG0081|consen 91 AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQA----AALADKYG--LPYFETSAC 164 (219)
T ss_pred hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHH----HHHHHHhC--CCeeeeccc
Confidence 99999999999732 122334444443 33455999999999976332111111 11122332 699999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.||++..+.+...
T Consensus 165 tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDL 179 (219)
T ss_pred cCcCHHHHHHHHHHH
Confidence 999999988887643
No 479
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.48 E-value=3.1e-13 Score=145.29 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=103.0
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|+.|+|||||+++|+... +... .. ... ...|+. ..+...++.++||||||+.++...+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~~--~~-~~~--------~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPEN--VP-RVL--------PEITIP---ADVTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCcc--CC-Ccc--------cceEee---eeecCCeEEEEEEeCCCchhhhHHHh
Confidence 79999999999999999998642 2110 00 000 112221 12223557899999999998888888
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHH-HHH-HHHHH--cCCccEEEEeccCCCCCChhh-hHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTR-FVT-RKALK--LGFKPIVVVNKIDRSNARPEW-VVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~-~~~-~~~~~--~glp~IvviNKiD~~~a~~~~-v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..+..+|++++|+|++++..-+.. ..| ..+.. .++|+++|+||+|+.+..... ..+++......+.. ..+
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~ 140 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE-----IET 140 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc-----ccE
Confidence 888999999999999875443332 223 33332 378999999999997654211 11222111111111 126
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++.+||++|. |++++++.+.+.+
T Consensus 141 ~~e~Sa~~~~----------~v~~lf~~~~~~~ 163 (166)
T cd01893 141 CVECSAKTLI----------NVSEVFYYAQKAV 163 (166)
T ss_pred EEEecccccc----------CHHHHHHHHHHHh
Confidence 8999999998 9999999987654
No 480
>KOG0395|consensus
Probab=99.48 E-value=2.7e-13 Score=148.95 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=117.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|.+|+|||+|+.++....|...+.|++. +.....+..++. .+.|+||+|++.|..++..+++.+|+.++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 457899999999999999999999999888877765 444455555554 67789999999999999999999999999
Q ss_pred EEeCCCCCcHHHH----HHHHHHH-HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 146 VVAADDGVMPQTR----EAIAHAK-ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 146 Vvda~~g~~~qt~----e~i~~~~-~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
||++++...-+.. +.+...+ ...+|+++|+||+|+.........+- ......| .++|+++||+.+.+++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg----~~la~~~--~~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEG----KALARSW--GCAFIETSAKLNYNVD 154 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHH----HHHHHhc--CCcEEEeeccCCcCHH
Confidence 9999995543332 2222222 23579999999999976311111110 0012233 3679999999999999
Q ss_pred HHHHHHHHHHH
Q psy1758 221 KLLENISLQAE 231 (1527)
Q Consensus 221 eL~~~l~~~~~ 231 (1527)
++|..|..+..
T Consensus 155 ~~F~~L~r~~~ 165 (196)
T KOG0395|consen 155 EVFYELVREIR 165 (196)
T ss_pred HHHHHHHHHHH
Confidence 99999986654
No 481
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.47 E-value=2.7e-13 Score=144.67 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=100.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~ 1000 (1527)
.+|+++|.+|+|||||+++++...-.....+. . + +.....+..+ ...+.||||||+.+|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t----~----------~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPT----I----------E---DSYRKQIEVDGQQCMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCc----h----------h---hhEEEEEEECCEEEEEEEEECCCccccch
Confidence 47999999999999999999854211000000 0 0 0011123333 35678999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.....++.+|++++|+|.++... .....++..+.. .++|+++|.||+|+.+.+.. ..++... +.. ..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~-~~~------~~ 136 (163)
T cd04136 65 MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVV-SREEGQA-LAR------QW 136 (163)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccee-cHHHHHH-HHH------Hc
Confidence 88888999999999999986322 122233333332 36899999999998653211 1111111 111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..|++++||++|. |+.++++.+.+.+
T Consensus 137 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 162 (163)
T cd04136 137 GCPFYETSAKSKI----------NVDEVFADLVRQI 162 (163)
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHhc
Confidence 3589999999998 9999999998654
No 482
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.47 E-value=3.9e-13 Score=145.10 Aligned_cols=159 Identities=20% Similarity=0.234 Sum_probs=104.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|++|+|||||+++++.. .+.. +....+..+.....+.+.+ +.++||||||+.+|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~--~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAG--RFPE--------------RTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC--CCCC--------------ccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 468999999999999999999743 1110 0111222222333344444 789999999999987
Q ss_pred H-HHHHHHHhcCEEEEEEeCCCCCChhHHHHHH-HHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 1000 G-EVERILSMVDNVLLLIDAVEGPMPQTRFVTR-KALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1000 ~-ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~-~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
. .....++.+|++++|+|++++...+....|. .+.. .++|+++|.||+|+.+.+. +..+....+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~------ 137 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQ--VPTDLAQRFAD------ 137 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcC--CCHHHHHHHHH------
Confidence 4 4666789999999999999865555544443 3333 3589999999999865431 11111111111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...+|++.+||+++... .++..+|..+++.+
T Consensus 138 ~~~~~~~e~Sa~~~~~~-------~~i~~~f~~l~~~~ 168 (170)
T cd04115 138 AHSMPLFETSAKDPSEN-------DHVEAIFMTLAHKL 168 (170)
T ss_pred HcCCcEEEEeccCCcCC-------CCHHHHHHHHHHHh
Confidence 12367999999995311 17888888887654
No 483
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.47 E-value=5.1e-13 Score=143.05 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=101.5
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~e 1001 (1527)
+|+++|.+|+|||||+++++.. .+.... ...-+-+. ...+..+ .+.++||||||+..|...
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~--~~~~~~------------~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG--IFVEKY------------DPTIEDSY---RKQVEVDGQQCMLEILDTAGTEQFTAM 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCccc------------CCcchheE---EEEEEECCEEEEEEEEECCCcccchhH
Confidence 7999999999999999999843 221100 00001111 1223333 456789999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....++.+|++++|+|.++....+ ....+..... .++|+++|.||+|+....... .++..... ....
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~-------~~~~ 137 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG-KEQGQNLA-------RQWG 137 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEc-HHHHHHHH-------HHhC
Confidence 999999999999999987643222 2223333322 468999999999986542111 11111111 1123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+|++++||++|. |++++++++.+.+
T Consensus 138 ~~~~~~Sa~~~~----------~v~~~~~~l~~~l 162 (164)
T cd04175 138 CAFLETSAKAKI----------NVNEIFYDLVRQI 162 (164)
T ss_pred CEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 589999999998 9999999998754
No 484
>KOG0073|consensus
Probab=99.47 E-value=8.8e-13 Score=133.77 Aligned_cols=157 Identities=19% Similarity=0.237 Sum_probs=117.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.|..+|.++|..|+||||++++|.+..... -.-|..+....+.+++.++++||..||..+...+..|+..+|++|+|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~---i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDT---ISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccc---cCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 457789999999999999999998876321 12255666677888999999999999999999999999999999999
Q ss_pred EeCCCCC-cHHHHHHHHH----HHHcCCCEEEEEEcccCCcc-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGV-MPQTREAIAH----AKISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~-~~qt~e~i~~----~~~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|..|.. +.++...+.. -+..+.|++++.||.|+..+ +.+.+...+.-.... ....++++-|||.+|+++.
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~---ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA---KSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc---cccCceEEEEeccccccHH
Confidence 9998843 3333333333 34568899999999999853 222332222111111 1234689999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
+-+++++..
T Consensus 168 ~gidWL~~~ 176 (185)
T KOG0073|consen 168 EGIDWLCDD 176 (185)
T ss_pred HHHHHHHHH
Confidence 999999754
No 485
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.46 E-value=3.3e-13 Score=143.19 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=103.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~e 1001 (1527)
+|+|+|++|+|||||+++|+.....-...+ .+-......+.++ .+++++|||||+.++...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDP-----------------TIEDSYRKTIVVDGETYTLDILDTAGQEEFSAM 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCC-----------------ChhHeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 589999999999999999986531111000 0001112223333 468999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....++.+|++++|+|.++... .+....+..... .++|+++|+||+|+...+. ...+++....... .
T Consensus 64 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~-------~ 135 (160)
T cd00876 64 RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ-VSKEEGKALAKEW-------G 135 (160)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccce-ecHHHHHHHHHHc-------C
Confidence 9999999999999999986421 223333433332 3689999999999876321 1122333222221 2
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.|++++||++|. |++++++.|.+++
T Consensus 136 ~~~~~~S~~~~~----------~i~~l~~~l~~~i 160 (160)
T cd00876 136 CPFIETSAKDNI----------NIDEVFKLLVREI 160 (160)
T ss_pred CcEEEeccCCCC----------CHHHHHHHHHhhC
Confidence 579999999998 9999999998653
No 486
>KOG1423|consensus
Probab=99.46 E-value=5.9e-13 Score=147.41 Aligned_cols=168 Identities=21% Similarity=0.224 Sum_probs=117.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC--
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD-- 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d-- 997 (1527)
.+..+||+||.||+|||||.|.|+++.- .+..++..+|.....+.+..+.+++.|.||||...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv---------------~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKV---------------SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKK 134 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcc---------------ccccccccceeeeeeEEEecCceEEEEecCCcccccc
Confidence 4667999999999999999999997611 12334445677777788888999999999999432
Q ss_pred ----------chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc-CCccEEEEeccCCCCCChhhhHHHHHHHH-
Q psy1758 998 ----------FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL-GFKPIVVVNKIDRSNARPEWVVDATFDLF- 1065 (1527)
Q Consensus 998 ----------f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~-glp~IvviNKiD~~~a~~~~v~~~~~~~~- 1065 (1527)
|..+..+++..||.+++|+||++.-.+-.-.++..+.++ .+|-|+|+||+|.... ..++-.+.+.+
T Consensus 135 ~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~--k~~Ll~l~~~Lt 212 (379)
T KOG1423|consen 135 MHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ--KRLLLNLKDLLT 212 (379)
T ss_pred hhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh--hhHHhhhHHhcc
Confidence 556778899999999999999863222223455555554 6899999999997643 12222222222
Q ss_pred ---------------hhhccc---ccccCC----cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1066 ---------------DKLCAT---EEQLDF----PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1066 ---------------~~l~~~---~~~~~~----pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
...... .....+ .+|++||++|. |+++|-+++....|+-
T Consensus 213 ~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~----------GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 213 NGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGE----------GIKDLKQYLMSQAPPG 273 (379)
T ss_pred ccccchhhhhHHHHhccCCcccccccccCcccceeEEEEeccccc----------CHHHHHHHHHhcCCCC
Confidence 111100 000112 28999999998 9999999999888754
No 487
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.46 E-value=4.4e-13 Score=146.52 Aligned_cols=156 Identities=14% Similarity=0.175 Sum_probs=105.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++++|||||+.++... .+.. .....|.++ ..+.+.++.+++|||||+..|...
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~--~~~~-------------~~~T~~~~~----~~~~~~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLG--EVVT-------------TIPTIGFNV----ETVEYKNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--Cccc-------------cCCccccce----EEEEECCEEEEEEECCCCHhHHHH
Confidence 358999999999999999999632 1110 011223222 245567899999999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
+..+++.+|++|+|+|+++.- .......+..... ...|+++|.||.|+++.... +++...+. +. ......
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~-~~-~~~~~~ 152 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLG-LH-SVRQRN 152 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhC-CC-cccCCc
Confidence 888999999999999998621 1222223333222 35788999999998764322 22322221 11 111223
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++++.+||++|. |+++++++|.+.+
T Consensus 153 ~~~~~~Sa~tg~----------gv~e~~~~l~~~i 177 (182)
T PTZ00133 153 WYIQGCCATTAQ----------GLYEGLDWLSANI 177 (182)
T ss_pred EEEEeeeCCCCC----------CHHHHHHHHHHHH
Confidence 567789999998 9999999998755
No 488
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.46 E-value=5.2e-13 Score=143.91 Aligned_cols=158 Identities=19% Similarity=0.236 Sum_probs=102.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|.+|+|||||+++++... +... .....|.........+......+.||||||+..|..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK--FDTQ------------LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC--CCcC------------cCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH
Confidence 45789999999999999999998531 1100 001122222222222222345678999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHH-------HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL-------KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~-------~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.....++.+|++++|+|.++....+....| .... ..++|.++|.||+|+.... ...+++.+...+..
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~--- 144 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ--VSTEEAQAWCRENG--- 144 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc--cCHHHHHHHHHHCC---
Confidence 888899999999999999865322222222 2121 1357999999999986321 11233333222221
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
..+++.+||++|. |+..+++.+++.
T Consensus 145 ---~~~~~e~Sa~~~~----------~v~~~~~~~~~~ 169 (170)
T cd04116 145 ---DYPYFETSAKDAT----------NVAAAFEEAVRR 169 (170)
T ss_pred ---CCeEEEEECCCCC----------CHHHHHHHHHhh
Confidence 2368999999998 999999998764
No 489
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46 E-value=3.9e-13 Score=148.09 Aligned_cols=160 Identities=21% Similarity=0.177 Sum_probs=104.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+|+|||||+++++.......... ...+.+.......+......++||||||+..|.....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~-------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 68 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFI-------------ATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTH 68 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcC-------------CcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhH
Confidence 699999999999999999975422111100 0111122111122222236889999999999988888
Q ss_pred HHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..++.+|++|+|+|++.....+ ....+..+.+ .++|+++|+||+|+...+.. ..++...+.. ...+|+
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~-~~~~~~~l~~-------~~~~~~ 140 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVV-KREDGERLAK-------EYGVPF 140 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcccc-CHHHHHHHHH-------HcCCeE
Confidence 8899999999999998743222 2233333333 36899999999998643211 1122222111 123589
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
+.+||++|. |++++++.+.+.++..
T Consensus 141 ~e~Sa~~~~----------~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 141 METSAKTGL----------NVELAFTAVAKELKHR 165 (191)
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHHHHh
Confidence 999999998 9999999999887644
No 490
>PRK11058 GTPase HflX; Provisional
Probab=99.46 E-value=3.1e-13 Score=165.20 Aligned_cols=154 Identities=17% Similarity=0.150 Sum_probs=106.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe-EEEEEeCCCCCCc-
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHADF- 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~iniiDTPGh~df- 998 (1527)
.++.|+|+|.+|+|||||+|+|+...-. .+...|.|++.....+.+.+. .+.||||||....
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~----------------v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l 259 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY----------------AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL 259 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee----------------eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC
Confidence 3467999999999999999999754111 122356777777777877664 8999999998432
Q ss_pred hH-------HHHHHHHhcCEEEEEEeCCCCCChhHH----HHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh
Q psy1758 999 GG-------EVERILSMVDNVLLLIDAVEGPMPQTR----FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 999 ~~-------ev~~~l~~aD~ailVVDa~~G~~~qt~----~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~ 1067 (1527)
.. .+...+..+|++|+|+|++++...... .++..+...++|+++|+||+|+...... ..+ .. .
T Consensus 260 p~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~----~~-~ 333 (426)
T PRK11058 260 PHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-RID----RD-E 333 (426)
T ss_pred CHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-HHH----HH-h
Confidence 11 123346889999999999986443322 2333333447899999999998643111 111 00 0
Q ss_pred hcccccccCCc-EEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1068 LCATEEQLDFP-VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1068 l~~~~~~~~~p-vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...| ++++||++|. |++.|++.|.+.++.
T Consensus 334 -------~~~~~~v~ISAktG~----------GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 334 -------ENKPIRVWLSAQTGA----------GIPLLFQALTERLSG 363 (426)
T ss_pred -------cCCCceEEEeCCCCC----------CHHHHHHHHHHHhhh
Confidence 1234 5889999998 999999999988853
No 491
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.46 E-value=5.4e-13 Score=147.77 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=98.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch--
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG-- 999 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~-- 999 (1527)
+|+|+|.+|+|||||+++++... +... ..+.++.......+.+++ +.++||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~~~--------------~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~ 65 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FPEE--------------YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CCcc--------------cCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc
Confidence 79999999999999999998542 1100 011111111112344555 678899999987653
Q ss_pred --HH----HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHh
Q psy1758 1000 --GE----VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFD 1066 (1527)
Q Consensus 1000 --~e----v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~ 1066 (1527)
.+ ...+++.+|++|+|+|++++..-+. ..++....+ .++|+++|.||+|+...+... .+++..
T Consensus 66 ~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~-~~~~~~--- 141 (198)
T cd04142 66 AGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP-RHVLSV--- 141 (198)
T ss_pred chhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc-HHHHHH---
Confidence 22 2345789999999999987432222 222233322 468999999999996543211 111211
Q ss_pred hhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1067 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1067 ~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+.. ....+|++++||++|. |++.||+.+++.+-
T Consensus 142 -~~~--~~~~~~~~e~Sak~g~----------~v~~lf~~i~~~~~ 174 (198)
T cd04142 142 -LVR--KSWKCGYLECSAKYNW----------HILLLFKELLISAT 174 (198)
T ss_pred -HHH--HhcCCcEEEecCCCCC----------CHHHHHHHHHHHhh
Confidence 111 1124689999999998 99999999987653
No 492
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.46 E-value=7.9e-13 Score=148.71 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=115.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC--CeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN--HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~--~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+...+.++++........... ..++.+|||+|+++|..++..++..++++++|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 689999999999999999999999988888877766666555444 347889999999999999999999999999999
Q ss_pred eCCC-CCcHHHHHHH-HHHHH---cCCCEEEEEEcccCCcchhHHH--HHHH-------hhhcccccccCCCCcEEEeec
Q psy1758 148 AADD-GVMPQTREAI-AHAKI---SGVPLIVAINKIDKLDINLDRI--KQDL-------ISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 148 da~~-g~~~qt~e~i-~~~~~---~~vpiIvviNKiDl~~~~~~~~--~~~l-------~~~~~~~~~~~~~~~v~~iSA 213 (1527)
|..+ ....+..+.| ..+.. .+.|+++++||+|+........ ...+ ...............++++||
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 9997 2223323322 23333 3589999999999987432111 0000 000000000011223899999
Q ss_pred c--CCCChhHHHHHHHHHH
Q psy1758 214 K--TGVGINKLLENISLQA 230 (1527)
Q Consensus 214 k--tg~gI~eL~~~l~~~~ 230 (1527)
+ ++.|+.+++..+....
T Consensus 166 ~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 166 KSLTGPNVNELFKELLRKL 184 (219)
T ss_pred ccCCCcCHHHHHHHHHHHH
Confidence 9 9999999999987654
No 493
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.46 E-value=5.2e-13 Score=145.31 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=102.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe------------cCeEEE
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------NGTRIN 988 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------~~~~in 988 (1527)
...+|+++|.+++|||||++++....-.-. . ....|.+. ....+.+ ....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~-~-------------~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPK-F-------------ITTVGIDF--REKRVVYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCcc-C-------------CCccceEE--EEEEEEEcCccccccccCCCEEEEE
Confidence 457899999999999999999975421100 0 00111111 1112222 236789
Q ss_pred EEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHH
Q psy1758 989 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFD 1063 (1527)
Q Consensus 989 iiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~ 1063 (1527)
||||||+..|.......++.+|++|+|+|+++...-+.. .++..... .+.|+++|.||+|+.+.+.. ..++...
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v-~~~~~~~ 145 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQV-SEEQAKA 145 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCcc-CHHHHHH
Confidence 999999999999889999999999999999873222222 22222322 26788999999998654211 1122222
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
... ...+|++.+||++|. |++++++.+.+.+
T Consensus 146 ~~~-------~~~~~~~e~Sak~~~----------~v~~l~~~l~~~~ 176 (180)
T cd04127 146 LAD-------KYGIPYFETSAATGT----------NVEKAVERLLDLV 176 (180)
T ss_pred HHH-------HcCCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 111 124579999999998 9999999987654
No 494
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.46 E-value=2.3e-13 Score=128.02 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=74.5
Q ss_pred ceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecc
Q psy1758 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 1201 (1527)
Q Consensus 1122 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~ 1201 (1527)
|.++|||+.+|++ |+++++||++|+|++||.|++... + .+.+|.+|+.+.|.++.+++++.||||++++|++ +.
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~--~--~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~ 74 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRT--G--KKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CA 74 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCC--C--CEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-cc
Confidence 5789999999988 999999999999999999998765 2 3578999999999999999999999999999997 99
Q ss_pred cCCeeeC
Q psy1758 1202 IGSTICD 1208 (1527)
Q Consensus 1202 iGdTi~~ 1208 (1527)
+||||++
T Consensus 75 ~Gdtl~~ 81 (81)
T cd04091 75 SGDTFTD 81 (81)
T ss_pred cCCEecC
Confidence 9999974
No 495
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.46 E-value=3.3e-13 Score=145.29 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=101.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~e 1001 (1527)
+|+++|.+|+|||||+++++..... ... + ...+.. ....+.++ ...+.+|||||+.+|...
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~-~~~--------~-----~t~~~~---~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFI-ESY--------D-----PTIEDS---YRKQVEIDGRQCDLEILDTAGTEQFTAM 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-ccc--------C-----Ccchhe---EEEEEEECCEEEEEEEEeCCCcccchhh
Confidence 6999999999999999999754211 000 0 001111 01222333 367899999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....++.+|++++|+|.++...-+. ....... ...++|++++.||+|+...+... .++........ -.
T Consensus 66 ~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~-~~~~~~~~~~~------~~ 138 (168)
T cd04177 66 RELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVS-REDGVSLSQQW------GN 138 (168)
T ss_pred hHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccC-HHHHHHHHHHc------CC
Confidence 9999999999999999986422221 1111222 23478999999999986543211 11111111111 12
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.|++++||++|. |++.++++++..+.
T Consensus 139 ~~~~~~SA~~~~----------~i~~~f~~i~~~~~ 164 (168)
T cd04177 139 VPFYETSARKRT----------NVDEVFIDLVRQII 164 (168)
T ss_pred ceEEEeeCCCCC----------CHHHHHHHHHHHHh
Confidence 579999999998 99999999987654
No 496
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.45 E-value=5.4e-13 Score=141.85 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=102.1
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+++|||||+++|+........... -+.+.......+......+++|||||+..|.....
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHEST--------------TQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCc--------------cceeEEEEEEEECCEEEEEEEEECCchHHHHHhhH
Confidence 7999999999999999999865221110000 01111111122222335789999999999888888
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..++.+|++++|+|++++...+....| ..+.. .++|+++|+||+|+...+. ...+++..... ...+++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~~ 139 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRV-VSKSEAEEYAK-------SVGAKH 139 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC-CCHHHHHHHHH-------HcCCEE
Confidence 888999999999999876433332222 22222 2689999999999875331 11122222221 124578
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+++||++|. |++++++++.+.+
T Consensus 140 ~~~s~~~~~----------gi~~~~~~l~~~~ 161 (162)
T cd04123 140 FETSAKTGK----------GIEELFLSLAKRM 161 (162)
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHh
Confidence 999999998 9999999987654
No 497
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.45 E-value=6.1e-13 Score=144.82 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=103.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~ 1000 (1527)
++|+++|++|+|||||+++++.........+. +.......+.+. ++.++||||||+.+|..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t-----------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPT-----------------IENTFSKIIRYKGQDYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcc-----------------hhhhEEEEEEECCEEEEEEEEECCChHhhHH
Confidence 68999999999999999999854221100000 000001222333 36789999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.....+..+|++++|+|.++....+. ...+....+ .++|.++|+||+|+...+.. ..++....... .
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~-------~ 136 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV-STEEGKELAES-------W 136 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc-CHHHHHHHHHH-------c
Confidence 88899999999999999987543333 233333332 46799999999998643211 11122221111 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..|++++||++|. |+.+++.++.+.+
T Consensus 137 ~~~~~~~Sa~~~~----------gv~~l~~~l~~~~ 162 (180)
T cd04137 137 GAAFLESSARENE----------NVEEAFELLIEEI 162 (180)
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3579999999998 9999999998765
No 498
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.45 E-value=5.4e-13 Score=148.05 Aligned_cols=158 Identities=21% Similarity=0.277 Sum_probs=106.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
...+|+++|.+|+|||||+++++... +.. ......|+.. ....+.+.+ ..++||||||+..|
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~~~------------~~~~t~~~~~--~~~~~~~~~~~~~l~l~D~~G~~~~ 68 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--FSG------------SYITTIGVDF--KIRTVEINGERVKLQIWDTAGQERF 68 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCC------------CcCcccccee--EEEEEEECCEEEEEEEEeCCCchhH
Confidence 45789999999999999999997541 110 0011122222 223344443 57899999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH--cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~--~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.......++.+|++++|+|+++...-+. ..++..... ...|.++|+||+|+...... ..++...... +.
T Consensus 69 ~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~-~~~~~~~~~~-------~~ 140 (199)
T cd04110 69 RTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVV-ETEDAYKFAG-------QM 140 (199)
T ss_pred HHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccccc-CHHHHHHHHH-------Hc
Confidence 9988999999999999999987432222 223333332 25788999999998653211 1122222111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.++++.+||++|. |++.++++|.+.+.
T Consensus 141 ~~~~~e~Sa~~~~----------gi~~lf~~l~~~~~ 167 (199)
T cd04110 141 GISLFETSAKENI----------NVEEMFNCITELVL 167 (199)
T ss_pred CCEEEEEECCCCc----------CHHHHHHHHHHHHH
Confidence 4679999999998 99999999988763
No 499
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.45 E-value=2e-13 Score=142.65 Aligned_cols=136 Identities=22% Similarity=0.206 Sum_probs=90.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC----Cch
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA----DFG 999 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~----df~ 999 (1527)
+|+++|++|+|||||+++|+...-. ...| ..+.+.+ .+|||||+. .+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--------------------~~~t-----~~~~~~~---~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--------------------YKKT-----QAVEYND---GAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--------------------cccc-----eeEEEcC---eeecCchhhhhhHHHH
Confidence 7999999999999999999754110 0011 1233433 789999973 233
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..+...++.+|++++|+|++++...+...++.. .+.|.++|+||+|+.+.. ...++..+.....+ ..|+
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~------~~~~ 122 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEAD--VDIERAKELLETAG------AEPI 122 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcc--cCHHHHHHHHHHcC------CCcE
Confidence 333445789999999999998876665433322 345999999999986422 11222222222211 1268
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHH
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAIL 1108 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~ 1108 (1527)
+++||++|. |++++++.+.
T Consensus 123 ~~~Sa~~~~----------gi~~l~~~l~ 141 (142)
T TIGR02528 123 FEISSVDEQ----------GLEALVDYLN 141 (142)
T ss_pred EEEecCCCC----------CHHHHHHHHh
Confidence 999999998 9999998874
No 500
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.45 E-value=3.6e-13 Score=148.29 Aligned_cols=156 Identities=14% Similarity=0.156 Sum_probs=101.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~e 1001 (1527)
+|+++|.+|+|||||+++|+...-.....+. -|... ...+.+++ ..++||||||+.+|...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t--------------~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPT--------------IEDSY---RKQVVVDGQPCMLEVLDTAGQEEYTAL 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCc--------------hHhhE---EEEEEECCEEEEEEEEECCCchhhHHH
Confidence 4899999999999999999853211000000 01000 11122333 46899999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
...+++.+|++|+|+|.++...... ...+..+.. .++|+++|.||+|+...+.-. .++... +. ..
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~-~~~~~~-~~------~~ 135 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS-TEEGAA-LA------RR 135 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC-HHHHHH-HH------HH
Confidence 8899999999999999987432222 233333322 367999999999986432111 111111 11 11
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..++++.+||++|. |++++++.+++.+-..
T Consensus 136 ~~~~~~e~SAk~~~----------~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 136 LGCEFIEASAKTNV----------NVERAFYTLVRALRQQ 165 (190)
T ss_pred hCCEEEEecCCCCC----------CHHHHHHHHHHHHHHh
Confidence 24578999999998 9999999998766433
Done!