Query psy1758
Match_columns 1527
No_of_seqs 1248 out of 10059
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 17:15:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e3x_A BIPA; MCSG,PSI2, struct 100.0 4E-100 1E-104 874.7 31.1 328 1193-1525 2-330 (332)
2 1zo1_I IF2, translation initia 100.0 1.7E-88 5.9E-93 836.2 6.0 486 67-552 2-487 (501)
3 3izy_P Translation initiation 100.0 8.7E-87 3E-91 827.4 8.1 485 67-551 2-529 (537)
4 4fn5_A EF-G 1, elongation fact 100.0 2.1E-82 7.1E-87 824.3 41.1 454 917-1395 8-697 (709)
5 2ywe_A GTP-binding protein LEP 100.0 2.3E-81 7.9E-86 788.2 42.2 482 919-1440 3-523 (600)
6 3j25_A Tetracycline resistance 100.0 4.3E-84 1.5E-88 829.1 10.5 472 921-1426 1-637 (638)
7 3cb4_D GTP-binding protein LEP 100.0 1E-79 3.4E-84 775.5 44.1 480 920-1440 2-518 (599)
8 2rdo_7 EF-G, elongation factor 100.0 6.1E-76 2.1E-80 759.6 49.3 453 918-1395 6-691 (704)
9 2xex_A Elongation factor G; GT 100.0 3.3E-75 1.1E-79 752.5 45.2 453 918-1395 6-679 (693)
10 1dar_A EF-G, elongation factor 100.0 3.5E-75 1.2E-79 752.1 37.9 453 918-1395 8-680 (691)
11 2dy1_A Elongation factor G; tr 100.0 1.1E-71 3.6E-76 717.5 44.1 449 919-1395 6-650 (665)
12 1n0u_A EF-2, elongation factor 100.0 1.8E-69 6.2E-74 711.8 46.4 466 919-1395 16-805 (842)
13 1g7s_A Translation initiation 100.0 1.9E-70 6.4E-75 692.4 32.0 454 67-551 3-542 (594)
14 1k8w_A TRNA pseudouridine synt 100.0 6.1E-71 2.1E-75 629.7 22.7 263 651-914 13-285 (327)
15 1r3e_A TRNA pseudouridine synt 100.0 1.3E-70 4.3E-75 622.6 21.3 251 661-915 1-251 (309)
16 1sgv_A TRNA pseudouridine synt 100.0 2.6E-70 8.9E-75 620.6 18.3 248 662-914 5-257 (316)
17 3vqt_A RF-3, peptide chain rel 100.0 4.4E-69 1.5E-73 676.4 27.7 369 918-1311 27-496 (548)
18 2h5e_A Peptide chain release f 100.0 5.9E-56 2E-60 555.1 33.3 367 919-1311 10-473 (529)
19 3tr5_A RF-3, peptide chain rel 100.0 7.4E-56 2.5E-60 553.5 31.8 406 919-1369 10-511 (528)
20 3u28_A H/ACA ribonucleoprotein 100.0 6.9E-55 2.4E-59 508.0 15.1 221 661-915 57-288 (400)
21 2apo_A Probable tRNA pseudouri 100.0 1.6E-54 5.4E-59 503.9 17.7 220 661-915 64-291 (357)
22 2aus_C Pseudouridine synthase; 100.0 6E-54 2.1E-58 499.8 17.8 220 661-915 44-272 (334)
23 3j2k_7 ERF3, eukaryotic polype 100.0 4.6E-36 1.6E-40 369.1 26.0 282 919-1212 14-329 (439)
24 1d2e_A Elongation factor TU (E 100.0 7.8E-36 2.7E-40 363.3 20.1 281 922-1211 3-291 (397)
25 2c78_A Elongation factor TU-A; 100.0 2.2E-35 7.5E-40 360.6 20.9 283 920-1210 9-308 (405)
26 1jny_A EF-1-alpha, elongation 100.0 3.9E-35 1.3E-39 361.2 21.3 282 920-1212 4-319 (435)
27 3p26_A Elongation factor 1 alp 100.0 6.3E-34 2.1E-38 355.0 23.8 286 920-1211 31-363 (483)
28 1r5b_A Eukaryotic peptide chai 100.0 1.1E-34 3.7E-39 359.7 16.2 282 920-1212 41-358 (467)
29 3mca_A HBS1, elongation factor 100.0 7E-35 2.4E-39 369.8 12.8 282 919-1212 174-491 (592)
30 3avx_A Elongation factor TS, e 100.0 2.6E-34 8.9E-39 372.7 18.2 282 920-1211 294-582 (1289)
31 1zun_B Sulfate adenylate trans 100.0 1.8E-33 6.2E-38 346.4 24.8 282 920-1212 22-328 (434)
32 1f60_A Elongation factor EEF1A 100.0 2.4E-33 8.1E-38 346.8 20.5 280 921-1211 6-329 (458)
33 2elf_A Protein translation elo 100.0 8E-33 2.7E-37 332.2 20.5 237 924-1208 23-275 (370)
34 3izq_1 HBS1P, elongation facto 100.0 3.2E-33 1.1E-37 355.4 17.9 286 920-1211 165-497 (611)
35 1kk1_A EIF2gamma; initiation o 100.0 3E-32 1E-36 333.5 23.3 261 920-1211 8-317 (410)
36 1s0u_A EIF-2-gamma, translatio 100.0 1.5E-31 5.3E-36 326.8 22.7 261 920-1211 6-315 (408)
37 1wb1_A Translation elongation 100.0 1.7E-32 5.9E-37 340.7 13.3 259 920-1209 17-284 (482)
38 1g7s_A Translation initiation 100.0 4.8E-32 1.6E-36 342.4 16.0 348 921-1311 4-438 (594)
39 3sjy_A Translation initiation 100.0 1.5E-30 5E-35 317.6 22.6 272 920-1212 6-310 (403)
40 1zo1_I IF2, translation initia 100.0 2.2E-31 7.7E-36 328.2 7.9 254 921-1211 3-259 (501)
41 3izy_P Translation initiation 100.0 7.7E-32 2.6E-36 335.0 3.5 254 922-1212 4-261 (537)
42 1z9b_A Translation initiation 100.0 3.4E-31 1.1E-35 264.4 -5.7 135 324-460 1-135 (135)
43 3j2k_7 ERF3, eukaryotic polype 100.0 2.2E-27 7.7E-32 291.9 26.3 250 67-322 15-326 (439)
44 2hjg_A GTP-binding protein ENG 100.0 6.1E-27 2.1E-31 288.6 26.9 149 69-227 3-160 (436)
45 2ywe_A GTP-binding protein LEP 99.9 3.2E-27 1.1E-31 297.1 24.2 335 69-451 6-375 (600)
46 1d2e_A Elongation factor TU (E 99.9 9.5E-27 3.3E-31 283.3 25.1 248 69-320 3-287 (397)
47 1wb1_A Translation elongation 99.9 1.4E-27 4.6E-32 296.8 16.6 252 67-320 17-281 (482)
48 3cb4_D GTP-binding protein LEP 99.9 1.6E-26 5.6E-31 291.5 24.8 335 69-451 4-373 (599)
49 3vqt_A RF-3, peptide chain rel 99.9 7.9E-27 2.7E-31 293.2 19.8 294 67-390 29-438 (548)
50 2c78_A Elongation factor TU-A; 99.9 1.2E-26 3.9E-31 283.5 20.1 249 68-320 10-305 (405)
51 2elf_A Protein translation elo 99.9 2.9E-26 9.9E-31 275.3 22.7 237 71-321 23-275 (370)
52 1kk1_A EIF2gamma; initiation o 99.9 9.1E-26 3.1E-30 276.0 26.8 247 69-320 10-313 (410)
53 1s0u_A EIF-2-gamma, translatio 99.9 8.6E-26 3E-30 275.9 26.0 248 68-320 7-311 (408)
54 3p26_A Elongation factor 1 alp 99.9 4.7E-26 1.6E-30 284.0 24.0 253 68-323 32-362 (483)
55 1zun_B Sulfate adenylate trans 99.9 8.2E-26 2.8E-30 278.2 23.3 252 69-324 24-327 (434)
56 3tr5_A RF-3, peptide chain rel 99.9 2.3E-26 8E-31 287.4 17.8 334 68-446 12-463 (528)
57 1r5b_A Eukaryotic peptide chai 99.9 1.8E-26 6.3E-31 286.0 15.8 251 68-321 42-354 (467)
58 1jny_A EF-1-alpha, elongation 99.9 1E-25 3.6E-30 277.2 21.4 251 68-320 5-314 (435)
59 1f60_A Elongation factor EEF1A 99.9 5.9E-26 2E-30 280.7 18.9 250 69-322 7-327 (458)
60 2rdo_7 EF-G, elongation factor 99.9 9E-25 3.1E-29 282.5 30.7 303 67-399 8-448 (704)
61 3avx_A Elongation factor TS, e 99.9 1.2E-25 4.1E-30 292.1 22.2 250 67-320 294-578 (1289)
62 3mca_A HBS1, elongation factor 99.9 1.9E-26 6.4E-31 292.7 11.9 249 68-321 176-487 (592)
63 4dcu_A GTP-binding protein ENG 99.9 1.2E-24 4E-29 269.8 27.4 144 67-220 21-173 (456)
64 1dar_A EF-G, elongation factor 99.9 8.4E-25 2.9E-29 282.5 26.6 302 68-398 11-440 (691)
65 3izq_1 HBS1P, elongation facto 99.9 1.1E-25 3.7E-30 286.4 17.3 253 67-322 165-495 (611)
66 1jos_A RBFA, ribosome-binding 99.9 4.8E-26 1.6E-30 229.3 9.1 113 540-652 6-120 (128)
67 3sjy_A Translation initiation 99.9 2.9E-24 9.8E-29 262.1 26.6 251 67-322 6-307 (403)
68 2h5e_A Peptide chain release f 99.9 3.7E-24 1.3E-28 267.9 23.0 334 68-446 12-464 (529)
69 1pa4_A Probable ribosome-bindi 99.9 2.4E-26 8.2E-31 227.8 1.9 110 540-650 4-113 (116)
70 2dy1_A Elongation factor G; tr 99.9 4E-24 1.4E-28 275.4 22.3 301 67-398 7-414 (665)
71 4fn5_A EF-G 1, elongation fact 99.9 5.8E-24 2E-28 276.3 21.8 300 69-398 13-450 (709)
72 3j25_A Tetracycline resistance 99.9 7.9E-26 2.7E-30 289.9 1.8 237 70-308 3-317 (638)
73 2xex_A Elongation factor G; GT 99.9 3.1E-23 1.1E-27 268.0 22.6 301 68-398 9-439 (693)
74 1d1n_A Initiation factor 2; be 99.9 1.8E-24 6.3E-29 202.6 5.2 85 468-552 1-85 (99)
75 2kzf_A RBFA, ribosome-binding 99.9 3.6E-24 1.2E-28 208.7 7.3 99 540-639 6-106 (106)
76 2crv_A IF-2MT, translation ini 99.9 5.4E-24 1.9E-28 206.1 7.2 88 465-552 2-93 (120)
77 2e7g_A Putative ribosome-bindi 99.9 1.5E-24 5.1E-29 219.0 2.5 113 538-650 11-125 (129)
78 2dyj_A Ribosome-binding factor 99.9 2.7E-23 9.4E-28 197.9 9.6 91 541-635 4-94 (95)
79 2lkc_A Translation initiation 99.9 2.3E-22 7.8E-27 215.6 12.2 167 66-232 5-171 (178)
80 1n0u_A EF-2, elongation factor 99.8 7.1E-20 2.4E-24 241.2 19.0 303 68-398 18-520 (842)
81 3qq5_A Small GTP-binding prote 99.8 7.1E-22 2.4E-26 240.0 -0.3 253 917-1212 29-327 (423)
82 4dkx_A RAS-related protein RAB 99.8 7.8E-20 2.7E-24 203.4 13.5 154 67-229 11-173 (216)
83 2hjg_A GTP-binding protein ENG 99.8 2.8E-19 9.4E-24 220.3 14.6 161 67-231 173-348 (436)
84 4bas_A ADP-ribosylation factor 99.8 9.4E-19 3.2E-23 191.1 15.5 161 65-230 13-187 (199)
85 2dyk_A GTP-binding protein; GT 99.8 2.9E-18 9.9E-23 180.2 17.2 149 70-228 2-158 (161)
86 1ega_A Protein (GTP-binding pr 99.8 2.3E-19 7.9E-24 210.0 8.9 246 67-329 6-288 (301)
87 2bme_A RAB4A, RAS-related prot 99.8 2.6E-18 8.8E-23 185.5 16.4 156 67-230 8-171 (186)
88 1zd9_A ADP-ribosylation factor 99.8 3.4E-18 1.2E-22 185.6 16.9 157 66-228 19-181 (188)
89 1wf3_A GTP-binding protein; GT 99.8 2.1E-18 7.3E-23 201.6 15.6 154 67-228 5-169 (301)
90 2ew1_A RAS-related protein RAB 99.8 3.2E-18 1.1E-22 188.4 16.0 156 67-230 24-187 (201)
91 3tkl_A RAS-related protein RAB 99.8 2.8E-18 9.6E-23 186.9 15.4 155 68-230 15-177 (196)
92 1wms_A RAB-9, RAB9, RAS-relate 99.8 7.5E-18 2.6E-22 180.1 18.5 155 68-229 6-171 (177)
93 1upt_A ARL1, ADP-ribosylation 99.8 3.8E-18 1.3E-22 181.2 15.6 157 66-229 4-166 (171)
94 1r8s_A ADP-ribosylation factor 99.8 7.5E-18 2.6E-22 177.8 17.4 153 70-229 1-159 (164)
95 4dcu_A GTP-binding protein ENG 99.8 1.6E-18 5.6E-23 214.7 14.1 161 66-230 192-367 (456)
96 3o47_A ADP-ribosylation factor 99.8 1.2E-18 4E-23 206.6 12.3 215 8-229 100-324 (329)
97 2il1_A RAB12; G-protein, GDP, 99.8 2.9E-18 9.8E-23 187.0 14.3 156 67-229 24-187 (192)
98 2g6b_A RAS-related protein RAB 99.8 5.8E-18 2E-22 181.5 16.0 156 67-230 8-172 (180)
99 2wji_A Ferrous iron transport 99.8 1.5E-18 5.1E-23 184.5 11.2 150 69-228 3-161 (165)
100 3iev_A GTP-binding protein ERA 99.8 6.1E-18 2.1E-22 198.7 17.5 157 67-229 8-179 (308)
101 4dhe_A Probable GTP-binding pr 99.8 3.3E-18 1.1E-22 190.7 14.3 163 67-229 27-208 (223)
102 2hup_A RAS-related protein RAB 99.8 5.6E-18 1.9E-22 186.2 16.0 156 67-230 27-191 (201)
103 1z08_A RAS-related protein RAB 99.8 3E-18 1E-22 181.8 13.3 154 68-229 5-166 (170)
104 1zj6_A ADP-ribosylation factor 99.8 3.7E-18 1.3E-22 185.0 13.8 157 67-230 14-176 (187)
105 2p5s_A RAS and EF-hand domain 99.8 1.1E-18 3.7E-23 191.4 9.7 159 67-229 26-194 (199)
106 2hxs_A RAB-26, RAS-related pro 99.8 2.5E-18 8.4E-23 184.1 12.0 154 68-229 5-170 (178)
107 3tw8_B RAS-related protein RAB 99.7 3.1E-18 1.1E-22 183.5 12.8 155 68-230 8-169 (181)
108 1ksh_A ARF-like protein 2; sma 99.7 1.1E-17 3.8E-22 180.8 17.0 157 67-230 16-178 (186)
109 2fu5_C RAS-related protein RAB 99.7 2.5E-18 8.6E-23 185.2 11.7 155 68-230 7-169 (183)
110 1z0f_A RAB14, member RAS oncog 99.7 5.5E-18 1.9E-22 181.2 14.3 154 68-229 14-175 (179)
111 3iby_A Ferrous iron transport 99.7 1.9E-18 6.5E-23 197.4 11.3 148 70-227 2-162 (256)
112 2y8e_A RAB-protein 6, GH09086P 99.7 4.7E-18 1.6E-22 181.8 13.6 153 68-228 13-173 (179)
113 1svi_A GTP-binding protein YSX 99.7 1.5E-17 5.3E-22 181.0 18.0 156 67-229 21-192 (195)
114 3cph_A RAS-related protein SEC 99.7 6.9E-18 2.3E-22 186.5 15.4 157 66-230 17-180 (213)
115 1f6b_A SAR1; gtpases, N-termin 99.7 4.6E-18 1.6E-22 186.6 13.7 158 67-227 23-194 (198)
116 1m2o_B GTP-binding protein SAR 99.7 4.8E-18 1.6E-22 185.1 13.4 158 67-227 21-187 (190)
117 1r2q_A RAS-related protein RAB 99.7 4.9E-18 1.7E-22 179.8 13.0 153 68-228 5-165 (170)
118 1ky3_A GTP-binding protein YPT 99.7 5.1E-18 1.7E-22 182.0 13.2 156 68-230 7-176 (182)
119 3bc1_A RAS-related protein RAB 99.7 1.9E-17 6.5E-22 179.4 17.8 155 68-230 10-183 (195)
120 2h57_A ADP-ribosylation factor 99.7 7.6E-18 2.6E-22 183.0 14.6 159 65-229 17-184 (190)
121 1g16_A RAS-related protein SEC 99.7 3.6E-18 1.2E-22 181.0 11.7 154 69-230 3-163 (170)
122 1kao_A RAP2A; GTP-binding prot 99.7 5.7E-18 1.9E-22 178.6 13.2 153 68-229 2-163 (167)
123 2h17_A ADP-ribosylation factor 99.7 5.2E-18 1.8E-22 182.9 12.9 156 64-227 16-178 (181)
124 1c1y_A RAS-related protein RAP 99.7 7.8E-18 2.7E-22 177.9 14.0 154 68-229 2-164 (167)
125 2fn4_A P23, RAS-related protei 99.7 7.8E-18 2.7E-22 180.4 14.2 155 67-230 7-170 (181)
126 1fzq_A ADP-ribosylation factor 99.7 1.9E-17 6.6E-22 178.7 17.1 154 67-228 14-174 (181)
127 1ek0_A Protein (GTP-binding pr 99.7 1E-17 3.6E-22 177.3 14.6 152 69-228 3-165 (170)
128 2qu8_A Putative nucleolar GTP- 99.7 1.6E-17 5.6E-22 186.3 16.9 161 67-230 27-203 (228)
129 2fh5_B SR-beta, signal recogni 99.7 1.1E-17 3.7E-22 185.4 15.0 159 67-228 5-212 (214)
130 3kkq_A RAS-related protein M-R 99.7 1.5E-17 5.1E-22 179.1 15.7 154 67-229 16-179 (183)
131 3clv_A RAB5 protein, putative; 99.7 1.7E-17 5.9E-22 181.1 16.3 154 68-230 6-202 (208)
132 3pqc_A Probable GTP-binding pr 99.7 3.9E-17 1.3E-21 177.3 18.9 156 67-229 21-191 (195)
133 2gj8_A MNME, tRNA modification 99.7 7.6E-18 2.6E-22 180.5 13.0 149 68-229 3-163 (172)
134 2efe_B Small GTP-binding prote 99.7 1.1E-17 3.8E-22 179.6 14.3 154 68-229 11-172 (181)
135 2b6h_A ADP-ribosylation factor 99.7 1.1E-17 3.9E-22 182.4 14.4 156 67-229 27-188 (192)
136 3t5g_A GTP-binding protein RHE 99.7 3.4E-18 1.1E-22 183.9 10.1 154 68-230 5-167 (181)
137 4gzl_A RAS-related C3 botulinu 99.7 8E-18 2.7E-22 185.5 13.2 161 67-228 28-201 (204)
138 2o52_A RAS-related protein RAB 99.7 5.2E-18 1.8E-22 186.3 11.7 156 67-230 23-186 (200)
139 1zbd_A Rabphilin-3A; G protein 99.7 1.9E-17 6.4E-22 181.8 16.0 155 68-230 7-169 (203)
140 1z0j_A RAB-22, RAS-related pro 99.7 9E-18 3.1E-22 178.0 13.0 153 68-228 5-165 (170)
141 3t1o_A Gliding protein MGLA; G 99.7 9.8E-18 3.3E-22 182.4 13.5 156 68-230 13-190 (198)
142 1vg8_A RAS-related protein RAB 99.7 1.1E-17 3.9E-22 183.8 14.1 156 68-230 7-173 (207)
143 3q85_A GTP-binding protein REM 99.7 1.2E-17 4.3E-22 177.0 13.8 153 70-230 3-165 (169)
144 3iev_A GTP-binding protein ERA 99.7 2E-17 6.9E-22 194.2 16.6 163 919-1114 7-183 (308)
145 1z2a_A RAS-related protein RAB 99.7 1.1E-17 3.7E-22 177.0 12.9 154 68-229 4-164 (168)
146 3a1s_A Iron(II) transport prot 99.7 7.4E-18 2.5E-22 192.8 12.3 153 68-230 4-165 (258)
147 2nzj_A GTP-binding protein REM 99.7 1.6E-17 5.5E-22 177.1 14.1 153 68-230 3-167 (175)
148 2oil_A CATX-8, RAS-related pro 99.7 9E-18 3.1E-22 182.8 12.4 156 67-230 23-186 (193)
149 2bcg_Y Protein YP2, GTP-bindin 99.7 9.7E-18 3.3E-22 184.6 12.7 155 68-230 7-169 (206)
150 1wf3_A GTP-binding protein; GT 99.7 8.9E-18 3E-22 196.3 13.1 158 921-1113 6-173 (301)
151 2a5j_A RAS-related protein RAB 99.7 9.5E-18 3.3E-22 182.5 12.5 156 67-230 19-182 (191)
152 1z06_A RAS-related protein RAB 99.7 1.9E-17 6.6E-22 179.6 14.9 155 66-228 17-184 (189)
153 1u8z_A RAS-related protein RAL 99.7 2.8E-17 9.7E-22 173.4 15.7 152 68-229 3-164 (168)
154 3i8s_A Ferrous iron transport 99.7 3.8E-18 1.3E-22 197.1 9.7 150 68-227 2-164 (274)
155 3reg_A RHO-like small GTPase; 99.7 8.4E-18 2.9E-22 183.3 12.0 156 67-230 21-186 (194)
156 3q72_A GTP-binding protein RAD 99.7 1E-17 3.6E-22 177.1 12.3 151 69-230 2-162 (166)
157 1mky_A Probable GTP-binding pr 99.7 2.2E-17 7.6E-22 203.5 17.1 153 70-230 2-164 (439)
158 1moz_A ARL1, ADP-ribosylation 99.7 1.8E-17 6E-22 178.5 14.2 157 67-230 16-178 (183)
159 2gf9_A RAS-related protein RAB 99.7 1E-17 3.5E-22 181.8 12.4 155 68-230 21-183 (189)
160 2f7s_A C25KG, RAS-related prot 99.7 1.7E-17 5.9E-22 184.2 14.5 156 67-230 23-197 (217)
161 4dhe_A Probable GTP-binding pr 99.7 7.9E-18 2.7E-22 187.6 11.5 176 918-1117 25-215 (223)
162 2fg5_A RAB-22B, RAS-related pr 99.7 1.8E-17 6E-22 180.6 13.8 155 67-229 21-183 (192)
163 3q3j_B RHO-related GTP-binding 99.7 1.8E-17 6.1E-22 184.2 13.8 164 65-230 23-201 (214)
164 1x3s_A RAS-related protein RAB 99.7 2.2E-17 7.5E-22 179.5 14.2 155 68-230 14-176 (195)
165 3dz8_A RAS-related protein RAB 99.7 7.2E-18 2.5E-22 183.5 10.3 156 67-230 21-184 (191)
166 2a9k_A RAS-related protein RAL 99.7 3.8E-17 1.3E-21 176.0 15.7 154 67-230 16-179 (187)
167 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.9E-17 6.4E-22 178.4 13.1 160 68-229 4-177 (186)
168 2wjg_A FEOB, ferrous iron tran 99.7 1.3E-17 4.4E-22 180.5 11.8 154 67-230 5-167 (188)
169 4dsu_A GTPase KRAS, isoform 2B 99.7 3.6E-17 1.2E-21 176.7 15.1 154 68-230 3-164 (189)
170 2erx_A GTP-binding protein DI- 99.7 3.7E-17 1.3E-21 173.4 14.8 151 69-228 3-163 (172)
171 2x77_A ADP-ribosylation factor 99.7 1.6E-17 5.4E-22 180.2 12.1 156 68-230 21-182 (189)
172 2gco_A H9, RHO-related GTP-bin 99.7 2.5E-17 8.5E-22 180.9 13.3 159 67-229 23-197 (201)
173 2bov_A RAla, RAS-related prote 99.7 9.2E-17 3.2E-21 176.3 17.6 154 67-230 12-175 (206)
174 3cbq_A GTP-binding protein REM 99.7 2.3E-17 7.9E-22 180.6 12.6 155 68-230 22-186 (195)
175 2atx_A Small GTP binding prote 99.7 4E-17 1.4E-21 177.8 14.3 158 68-229 17-190 (194)
176 3k53_A Ferrous iron transport 99.7 1.8E-17 6.2E-22 191.2 11.8 153 68-230 2-164 (271)
177 3ihw_A Centg3; RAS, centaurin, 99.7 2.5E-17 8.6E-22 178.5 12.1 151 66-230 17-178 (184)
178 3cpj_B GTP-binding protein YPT 99.7 1.6E-17 5.5E-22 185.6 10.7 154 68-229 12-173 (223)
179 4djt_A GTP-binding nuclear pro 99.7 1.1E-17 3.8E-22 185.8 9.3 158 67-230 9-173 (218)
180 2gf0_A GTP-binding protein DI- 99.7 1E-16 3.5E-21 174.9 16.7 154 67-229 6-168 (199)
181 2j1l_A RHO-related GTP-binding 99.7 3.9E-17 1.3E-21 181.3 13.5 162 67-230 32-207 (214)
182 3bwd_D RAC-like GTP-binding pr 99.7 1.7E-17 5.9E-22 178.2 10.2 158 67-229 6-178 (182)
183 3gee_A MNME, tRNA modification 99.7 1.5E-17 5.2E-22 205.3 11.0 154 65-229 229-395 (476)
184 2fv8_A H6, RHO-related GTP-bin 99.7 4.9E-17 1.7E-21 179.4 13.9 160 68-229 24-197 (207)
185 3oes_A GTPase rhebl1; small GT 99.7 1.2E-17 4.1E-22 183.4 8.9 156 66-230 21-185 (201)
186 2dyk_A GTP-binding protein; GT 99.7 6.2E-17 2.1E-21 170.0 14.0 153 922-1112 1-161 (161)
187 2lkc_A Translation initiation 99.7 9.7E-18 3.3E-22 179.5 7.7 163 920-1112 6-170 (178)
188 2q3h_A RAS homolog gene family 99.7 8.8E-17 3E-21 176.1 15.5 162 65-230 16-193 (201)
189 3gj0_A GTP-binding nuclear pro 99.7 9.7E-18 3.3E-22 187.0 7.9 155 67-229 13-172 (221)
190 3llu_A RAS-related GTP-binding 99.7 3.3E-17 1.1E-21 179.2 11.8 160 65-228 16-193 (196)
191 2ce2_X GTPase HRAS; signaling 99.7 1.6E-16 5.5E-21 167.0 16.7 152 69-229 3-162 (166)
192 2j0v_A RAC-like GTP-binding pr 99.7 3.3E-17 1.1E-21 181.3 11.7 155 68-230 8-178 (212)
193 3con_A GTPase NRAS; structural 99.7 1.7E-16 5.9E-21 172.0 17.2 155 67-230 19-181 (190)
194 3gee_A MNME, tRNA modification 99.7 4.2E-17 1.4E-21 201.4 13.7 158 921-1116 232-402 (476)
195 3b1v_A Ferrous iron uptake tra 99.7 1.3E-17 4.3E-22 192.1 8.2 149 69-228 3-160 (272)
196 1m7b_A RND3/RHOE small GTP-bin 99.7 6.2E-17 2.1E-21 174.9 12.8 159 67-229 5-180 (184)
197 2yc2_C IFT27, small RAB-relate 99.7 4.6E-17 1.6E-21 178.8 11.9 154 68-229 19-189 (208)
198 2cxx_A Probable GTP-binding pr 99.7 1.1E-16 3.9E-21 173.0 14.4 154 70-230 2-182 (190)
199 1ega_A Protein (GTP-binding pr 99.7 2.9E-17 9.8E-22 192.2 10.0 159 921-1113 7-175 (301)
200 2atv_A RERG, RAS-like estrogen 99.7 1.3E-16 4.4E-21 174.3 14.2 154 67-230 26-189 (196)
201 3c5c_A RAS-like protein 12; GD 99.7 1.6E-16 5.5E-21 172.4 14.1 153 67-229 19-183 (187)
202 2iwr_A Centaurin gamma 1; ANK 99.7 1.9E-16 6.4E-21 169.7 14.3 148 68-230 6-167 (178)
203 3qq5_A Small GTP-binding prote 99.7 1.7E-17 5.9E-22 201.5 6.8 153 67-229 32-193 (423)
204 1mky_A Probable GTP-binding pr 99.7 1.4E-16 4.7E-21 196.5 14.4 160 67-230 178-353 (439)
205 3geh_A MNME, tRNA modification 99.7 4.3E-17 1.5E-21 200.6 9.9 154 64-229 219-381 (462)
206 1gwn_A RHO-related GTP-binding 99.7 1.4E-16 4.8E-21 175.8 12.7 159 67-229 26-201 (205)
207 2g3y_A GTP-binding protein GEM 99.7 2.9E-16 1E-20 174.1 14.7 158 67-230 35-201 (211)
208 3lvq_E ARF-GAP with SH3 domain 99.7 2.2E-16 7.4E-21 198.1 15.2 156 67-229 320-481 (497)
209 1xzp_A Probable tRNA modificat 99.7 5.2E-17 1.8E-21 200.7 9.2 154 65-229 239-402 (482)
210 3l0i_B RAS-related protein RAB 99.7 2.5E-18 8.6E-23 188.5 -2.6 156 67-228 31-192 (199)
211 3iby_A Ferrous iron transport 99.7 9.5E-17 3.2E-21 183.4 9.7 150 923-1110 2-164 (256)
212 3t1o_A Gliding protein MGLA; G 99.7 2.5E-16 8.6E-21 171.2 11.9 169 919-1111 11-190 (198)
213 1zj6_A ADP-ribosylation factor 99.7 4.3E-16 1.5E-20 168.7 13.6 163 921-1117 15-182 (187)
214 2zej_A Dardarin, leucine-rich 99.7 2.6E-16 8.8E-21 170.3 11.7 159 69-229 2-175 (184)
215 1svi_A GTP-binding protein YSX 99.6 4.8E-16 1.7E-20 169.1 13.6 161 919-1112 20-194 (195)
216 3i8s_A Ferrous iron transport 99.6 1.4E-16 4.7E-21 184.0 8.9 155 922-1114 3-170 (274)
217 3r7w_A Gtpase1, GTP-binding pr 99.6 6.5E-16 2.2E-20 181.3 14.5 156 69-227 3-176 (307)
218 2xtp_A GTPase IMAP family memb 99.6 6.4E-16 2.2E-20 176.9 13.5 160 67-230 20-206 (260)
219 2xtp_A GTPase IMAP family memb 99.6 3.6E-16 1.2E-20 179.0 11.3 167 920-1113 20-208 (260)
220 2efe_B Small GTP-binding prote 99.6 9.3E-16 3.2E-20 164.5 13.2 163 920-1114 10-176 (181)
221 3th5_A RAS-related C3 botulinu 99.4 1.9E-17 6.5E-22 182.1 0.0 160 67-228 28-201 (204)
222 2cjw_A GTP-binding protein GEM 99.6 4.3E-16 1.5E-20 170.0 10.5 157 68-230 5-170 (192)
223 2gj8_A MNME, tRNA modification 99.6 7.9E-16 2.7E-20 164.8 12.2 152 922-1113 4-166 (172)
224 2fg5_A RAB-22B, RAS-related pr 99.6 7.5E-16 2.6E-20 167.7 12.2 163 920-1114 21-187 (192)
225 4bas_A ADP-ribosylation factor 99.6 4.4E-16 1.5E-20 169.8 10.0 166 917-1113 12-189 (199)
226 1r2q_A RAS-related protein RAB 99.6 1.1E-15 3.7E-20 161.7 12.2 161 920-1112 4-168 (170)
227 3pqc_A Probable GTP-binding pr 99.6 1.3E-15 4.4E-20 165.2 13.0 161 918-1112 19-193 (195)
228 1upt_A ARL1, ADP-ribosylation 99.6 7.2E-16 2.5E-20 163.6 10.7 159 920-1112 5-168 (171)
229 3a1s_A Iron(II) transport prot 99.6 9.1E-16 3.1E-20 175.5 12.3 156 920-1113 3-167 (258)
230 3k53_A Ferrous iron transport 99.6 1.2E-15 4.2E-20 175.9 13.3 154 922-1113 3-166 (271)
231 1r8s_A ADP-ribosylation factor 99.6 2.1E-15 7.2E-20 158.9 13.9 155 924-1112 2-161 (164)
232 1zd9_A ADP-ribosylation factor 99.6 1.2E-15 4.3E-20 165.4 12.5 161 920-1113 20-185 (188)
233 2wji_A Ferrous iron transport 99.6 1.4E-15 4.7E-20 161.5 12.2 151 923-1111 4-163 (165)
234 3geh_A MNME, tRNA modification 99.6 4E-16 1.4E-20 192.0 9.2 156 921-1115 223-386 (462)
235 1fzq_A ADP-ribosylation factor 99.6 3.2E-15 1.1E-19 161.3 15.0 160 920-1113 14-178 (181)
236 1z0f_A RAB14, member RAS oncog 99.6 1.8E-15 6.1E-20 161.6 12.8 161 919-1111 12-176 (179)
237 2h17_A ADP-ribosylation factor 99.6 9.4E-16 3.2E-20 165.2 10.6 158 919-1110 18-180 (181)
238 3tkl_A RAS-related protein RAB 99.6 1.8E-15 6E-20 164.6 12.6 159 920-1112 14-178 (196)
239 2wkq_A NPH1-1, RAS-related C3 99.6 2.3E-15 8E-20 178.0 14.3 162 66-229 152-327 (332)
240 1ek0_A Protein (GTP-binding pr 99.6 2.5E-15 8.5E-20 158.9 12.9 159 923-1112 4-168 (170)
241 2b6h_A ADP-ribosylation factor 99.6 4.2E-15 1.4E-19 162.0 14.7 159 920-1112 27-190 (192)
242 2p5s_A RAS and EF-hand domain 99.6 2.6E-15 8.7E-20 164.5 12.8 164 918-1112 24-196 (199)
243 3tw8_B RAS-related protein RAB 99.6 6.3E-16 2.1E-20 165.5 7.7 160 919-1112 6-170 (181)
244 2hxs_A RAB-26, RAS-related pro 99.6 3E-15 1E-19 160.0 12.8 160 921-1114 5-174 (178)
245 1ksh_A ARF-like protein 2; sma 99.6 1.1E-15 3.7E-20 165.2 9.3 160 920-1113 16-180 (186)
246 1zbd_A Rabphilin-3A; G protein 99.6 4.2E-15 1.4E-19 163.0 14.1 160 920-1111 6-169 (203)
247 2g6b_A RAS-related protein RAB 99.6 3E-15 1E-19 160.3 12.7 160 920-1112 8-173 (180)
248 2h57_A ADP-ribosylation factor 99.6 2E-15 6.9E-20 163.8 11.2 161 920-1112 19-186 (190)
249 1z0j_A RAB-22, RAS-related pro 99.6 4E-15 1.4E-19 157.5 13.1 161 920-1112 4-168 (170)
250 1wms_A RAB-9, RAB9, RAS-relate 99.6 4.3E-15 1.5E-19 158.6 13.3 159 920-1112 5-173 (177)
251 1f6b_A SAR1; gtpases, N-termin 99.6 2E-15 6.9E-20 165.5 10.8 158 922-1111 25-197 (198)
252 3clv_A RAB5 protein, putative; 99.6 3.8E-15 1.3E-19 162.5 12.6 108 985-1111 93-202 (208)
253 2il1_A RAB12; G-protein, GDP, 99.6 3.9E-15 1.3E-19 162.1 12.6 160 919-1111 23-188 (192)
254 2fu5_C RAS-related protein RAB 99.6 1.9E-15 6.5E-20 162.6 9.9 159 920-1112 6-170 (183)
255 2wjg_A FEOB, ferrous iron tran 99.6 3.2E-15 1.1E-19 161.6 11.5 156 921-1114 6-170 (188)
256 2y8e_A RAB-protein 6, GH09086P 99.6 3.6E-15 1.2E-19 159.2 11.7 159 921-1113 13-177 (179)
257 3cph_A RAS-related protein SEC 99.6 2.6E-15 9.1E-20 165.6 10.9 159 919-1112 17-181 (213)
258 2gf9_A RAS-related protein RAB 99.6 2.6E-15 8.8E-20 162.8 10.6 162 919-1112 19-184 (189)
259 2erx_A GTP-binding protein DI- 99.6 6.2E-15 2.1E-19 156.1 13.3 160 922-1114 3-168 (172)
260 1g16_A RAS-related protein SEC 99.6 2.3E-15 8E-20 159.3 9.7 156 922-1112 3-164 (170)
261 2nzj_A GTP-binding protein REM 99.6 4.5E-15 1.5E-19 158.1 12.0 159 921-1112 3-168 (175)
262 4dsu_A GTPase KRAS, isoform 2B 99.6 7.2E-15 2.5E-19 158.5 13.7 155 921-1112 3-165 (189)
263 1m2o_B GTP-binding protein SAR 99.6 3E-15 1E-19 162.9 10.7 158 922-1111 23-190 (190)
264 2bme_A RAB4A, RAS-related prot 99.6 2.6E-15 9E-20 161.8 10.2 159 920-1112 8-172 (186)
265 3q72_A GTP-binding protein RAD 99.6 3.7E-15 1.3E-19 157.4 11.0 156 922-1111 2-162 (166)
266 2fh5_B SR-beta, signal recogni 99.6 6.8E-15 2.3E-19 162.8 13.5 166 921-1110 6-213 (214)
267 3lxw_A GTPase IMAP family memb 99.6 3E-15 1E-19 170.2 10.7 161 67-230 19-206 (247)
268 1moz_A ARL1, ADP-ribosylation 99.6 2.2E-15 7.5E-20 162.0 9.1 159 920-1112 16-179 (183)
269 3gj0_A GTP-binding nuclear pro 99.6 2.2E-15 7.6E-20 167.8 9.5 159 920-1112 13-174 (221)
270 3bc1_A RAS-related protein RAB 99.6 6.3E-15 2.2E-19 159.5 12.7 161 919-1112 8-184 (195)
271 3kkq_A RAS-related protein M-R 99.6 7.9E-15 2.7E-19 157.7 13.4 157 920-1111 16-180 (183)
272 3dz8_A RAS-related protein RAB 99.6 2.6E-15 8.9E-20 163.2 9.7 163 918-1112 19-185 (191)
273 1u8z_A RAS-related protein RAL 99.6 6.7E-15 2.3E-19 155.1 12.6 155 922-1111 4-165 (168)
274 1kao_A RAP2A; GTP-binding prot 99.6 4.4E-15 1.5E-19 156.3 11.1 154 923-1111 4-164 (167)
275 3b1v_A Ferrous iron uptake tra 99.6 1.9E-15 6.6E-20 173.9 9.0 153 922-1113 3-164 (272)
276 2qtf_A Protein HFLX, GTP-bindi 99.6 1E-14 3.4E-19 174.6 15.3 157 70-230 180-352 (364)
277 2oil_A CATX-8, RAS-related pro 99.6 5.6E-15 1.9E-19 160.6 12.0 160 920-1111 23-186 (193)
278 1lnz_A SPO0B-associated GTP-bi 99.6 2.5E-15 8.5E-20 178.1 9.9 154 69-230 158-328 (342)
279 2hup_A RAS-related protein RAB 99.6 1E-14 3.5E-19 160.1 14.1 161 919-1113 26-193 (201)
280 1x3s_A RAS-related protein RAB 99.6 5.4E-15 1.9E-19 160.5 11.7 161 920-1113 13-178 (195)
281 2fn4_A P23, RAS-related protei 99.6 5.7E-15 1.9E-19 158.0 11.7 160 919-1113 6-172 (181)
282 1xzp_A Probable tRNA modificat 99.6 8.6E-15 2.9E-19 180.9 14.8 153 922-1112 243-404 (482)
283 1z2a_A RAS-related protein RAB 99.6 5.5E-15 1.9E-19 156.1 11.3 157 921-1111 4-165 (168)
284 1ky3_A GTP-binding protein YPT 99.6 3.2E-15 1.1E-19 160.1 9.5 160 920-1111 6-176 (182)
285 1vg8_A RAS-related protein RAB 99.6 2.6E-15 8.7E-20 165.0 8.5 159 920-1112 6-174 (207)
286 2x77_A ADP-ribosylation factor 99.6 3.7E-15 1.2E-19 161.5 9.6 159 921-1113 21-184 (189)
287 3lxw_A GTPase IMAP family memb 99.6 1E-14 3.5E-19 165.8 13.6 166 921-1113 20-208 (247)
288 2e87_A Hypothetical protein PH 99.6 2.8E-14 9.4E-19 171.1 17.7 156 67-230 165-334 (357)
289 2f9l_A RAB11B, member RAS onco 99.6 1.1E-14 3.8E-19 159.4 13.1 154 69-230 5-166 (199)
290 1c1y_A RAS-related protein RAP 99.6 9.8E-15 3.4E-19 154.0 11.9 157 923-1111 4-165 (167)
291 2a9k_A RAS-related protein RAL 99.6 1.3E-14 4.6E-19 156.0 13.0 158 920-1112 16-180 (187)
292 2bov_A RAla, RAS-related prote 99.6 1.5E-14 5.1E-19 158.6 13.6 159 919-1112 11-176 (206)
293 2ce2_X GTPase HRAS; signaling 99.6 1.9E-14 6.6E-19 151.0 13.9 153 923-1111 4-163 (166)
294 2aka_B Dynamin-1; fusion prote 99.6 1.1E-14 3.8E-19 169.9 13.2 162 67-231 24-252 (299)
295 3t5g_A GTP-binding protein RHE 99.6 3.6E-15 1.2E-19 160.1 8.3 159 920-1113 4-169 (181)
296 1z08_A RAS-related protein RAB 99.6 5E-15 1.7E-19 156.9 8.9 159 920-1112 4-168 (170)
297 2a5j_A RAS-related protein RAB 99.5 8.1E-15 2.8E-19 159.3 10.8 160 919-1112 18-183 (191)
298 3c5h_A Glucocorticoid receptor 99.5 2.6E-15 8.8E-20 171.6 7.1 157 66-229 16-252 (255)
299 1z06_A RAS-related protein RAB 99.5 6.7E-15 2.3E-19 159.5 10.1 159 920-1112 18-187 (189)
300 2atx_A Small GTP binding prote 99.5 1E-14 3.5E-19 158.7 11.2 162 919-1114 15-194 (194)
301 3l0i_B RAS-related protein RAB 99.5 4.6E-16 1.6E-20 170.4 0.5 158 919-1112 30-195 (199)
302 2qu8_A Putative nucleolar GTP- 99.5 3.3E-14 1.1E-18 159.3 15.4 162 920-1112 27-204 (228)
303 2bcg_Y Protein YP2, GTP-bindin 99.5 1.1E-14 3.9E-19 160.0 11.5 159 920-1112 6-170 (206)
304 3r7w_B Gtpase2, GTP-binding pr 99.5 7.9E-15 2.7E-19 170.6 10.4 151 71-227 1-169 (331)
305 2f7s_A C25KG, RAS-related prot 99.5 8.6E-15 2.9E-19 162.4 10.2 159 920-1112 23-198 (217)
306 2ew1_A RAS-related protein RAB 99.5 1.9E-14 6.4E-19 158.3 12.7 159 920-1112 24-188 (201)
307 3llu_A RAS-related GTP-binding 99.5 1.3E-14 4.6E-19 158.4 11.2 165 917-1111 15-195 (196)
308 2o52_A RAS-related protein RAB 99.5 6.2E-15 2.1E-19 161.7 8.3 159 920-1112 23-187 (200)
309 3q85_A GTP-binding protein REM 99.5 2.1E-14 7.3E-19 152.0 11.9 156 922-1111 2-165 (169)
310 3o47_A ADP-ribosylation factor 99.5 1.1E-14 3.7E-19 172.5 10.7 158 921-1112 164-326 (329)
311 2gf0_A GTP-binding protein DI- 99.5 2.8E-14 9.7E-19 155.5 13.2 160 921-1114 7-172 (199)
312 1mh1_A RAC1; GTP-binding, GTPa 99.5 5.2E-15 1.8E-19 159.2 7.2 168 921-1115 4-182 (186)
313 3cbq_A GTP-binding protein REM 99.5 2.8E-14 9.6E-19 156.0 13.0 174 908-1115 9-190 (195)
314 3reg_A RHO-like small GTPase; 99.5 7.1E-15 2.4E-19 160.0 7.6 160 920-1113 21-188 (194)
315 3bwd_D RAC-like GTP-binding pr 99.5 4.8E-15 1.6E-19 159.0 5.9 162 921-1114 7-182 (182)
316 3oes_A GTPase rhebl1; small GT 99.5 1.4E-14 4.7E-19 158.9 8.9 163 919-1114 21-188 (201)
317 3con_A GTPase NRAS; structural 99.5 3.8E-14 1.3E-18 153.5 12.3 156 921-1112 20-182 (190)
318 4djt_A GTP-binding nuclear pro 99.5 1.7E-14 5.8E-19 160.1 9.5 161 920-1113 9-175 (218)
319 3cpj_B GTP-binding protein YPT 99.5 1.4E-14 4.7E-19 161.8 8.6 160 920-1113 11-176 (223)
320 2yc2_C IFT27, small RAB-relate 99.5 1.2E-14 4.1E-19 159.4 7.9 161 920-1112 18-191 (208)
321 3dpu_A RAB family protein; roc 99.5 8.6E-15 2.9E-19 185.0 7.7 156 66-229 38-205 (535)
322 1oix_A RAS-related protein RAB 99.5 4.8E-14 1.6E-18 153.6 12.2 153 68-228 28-188 (191)
323 1nrj_B SR-beta, signal recogni 99.5 6.4E-15 2.2E-19 163.5 5.3 143 67-218 10-170 (218)
324 3t5d_A Septin-7; GTP-binding p 99.5 3.8E-14 1.3E-18 163.6 11.5 153 69-227 8-199 (274)
325 3lxx_A GTPase IMAP family memb 99.5 1.4E-13 4.6E-18 155.6 15.6 161 67-230 27-212 (239)
326 2cxx_A Probable GTP-binding pr 99.5 2.8E-14 9.5E-19 154.2 9.4 157 923-1113 2-184 (190)
327 4gzl_A RAS-related C3 botulinu 99.5 1.6E-14 5.4E-19 159.0 7.4 163 920-1111 28-203 (204)
328 2j0v_A RAC-like GTP-binding pr 99.5 3.3E-14 1.1E-18 157.0 9.7 163 921-1116 8-183 (212)
329 3t5d_A Septin-7; GTP-binding p 99.5 4.5E-14 1.5E-18 163.0 11.2 166 922-1113 8-204 (274)
330 2fv8_A H6, RHO-related GTP-bin 99.5 3.9E-14 1.3E-18 156.1 9.2 166 921-1115 24-202 (207)
331 2j1l_A RHO-related GTP-binding 99.5 6.5E-14 2.2E-18 155.3 10.9 158 921-1112 33-208 (214)
332 2q3h_A RAS homolog gene family 99.5 4.7E-14 1.6E-18 154.3 9.6 162 919-1114 17-196 (201)
333 1pui_A ENGB, probable GTP-bind 99.5 2.7E-13 9.2E-18 149.4 15.4 157 67-229 24-196 (210)
334 2qtf_A Protein HFLX, GTP-bindi 99.5 1.3E-13 4.6E-18 164.8 13.6 167 921-1117 178-358 (364)
335 3q3j_B RHO-related GTP-binding 99.5 3.8E-14 1.3E-18 157.3 8.1 164 919-1114 24-204 (214)
336 3r7w_A Gtpase1, GTP-binding pr 99.5 1.1E-13 3.7E-18 162.4 12.4 160 922-1111 3-179 (307)
337 1lnz_A SPO0B-associated GTP-bi 99.5 2.3E-14 7.8E-19 169.8 6.5 156 922-1113 158-330 (342)
338 3ihw_A Centg3; RAS, centaurin, 99.5 1.5E-13 5.1E-18 148.7 12.3 153 920-1111 18-178 (184)
339 2atv_A RERG, RAS-like estrogen 99.5 1.8E-13 6.1E-18 149.3 12.6 159 920-1111 26-189 (196)
340 2gco_A H9, RHO-related GTP-bin 99.5 1E-13 3.5E-18 152.0 10.5 162 921-1111 24-198 (201)
341 2iwr_A Centaurin gamma 1; ANK 99.5 2.3E-13 8E-18 145.5 12.2 151 922-1111 7-167 (178)
342 3lvq_E ARF-GAP with SH3 domain 99.4 1.6E-13 5.3E-18 172.1 11.9 159 920-1112 320-483 (497)
343 4dkx_A RAS-related protein RAB 99.4 2.7E-13 9.1E-18 150.7 12.4 161 921-1113 12-176 (216)
344 3th5_A RAS-related C3 botulinu 99.2 8.2E-15 2.8E-19 161.0 0.0 164 920-1110 28-202 (204)
345 3c5c_A RAS-like protein 12; GD 99.4 1.9E-13 6.6E-18 148.1 10.7 158 920-1111 19-184 (187)
346 1m7b_A RND3/RHOE small GTP-bin 99.4 6.4E-14 2.2E-18 151.2 6.6 161 920-1111 5-181 (184)
347 1jwy_B Dynamin A GTPase domain 99.4 3.8E-13 1.3E-17 158.2 13.6 159 67-229 22-259 (315)
348 1gwn_A RHO-related GTP-binding 99.4 1.8E-13 6E-18 151.0 6.2 158 921-1111 27-202 (205)
349 2qag_A Septin-2, protein NEDD5 99.4 3.8E-13 1.3E-17 161.1 9.6 199 922-1151 37-266 (361)
350 1jwy_B Dynamin A GTPase domain 99.4 3.9E-13 1.3E-17 158.2 8.9 119 983-1113 129-262 (315)
351 2j69_A Bacterial dynamin-like 99.4 2.9E-12 9.8E-17 165.8 17.7 164 66-229 66-322 (695)
352 2x2e_A Dynamin-1; nitration, h 99.4 8.6E-13 3E-17 157.9 11.5 160 67-229 29-255 (353)
353 3def_A T7I23.11 protein; chlor 99.4 8.4E-13 2.9E-17 151.3 10.1 116 921-1051 35-165 (262)
354 2aka_B Dynamin-1; fusion prote 99.4 8.9E-13 3.1E-17 153.7 10.4 175 921-1111 25-251 (299)
355 3def_A T7I23.11 protein; chlor 99.4 7.9E-13 2.7E-17 151.6 9.5 116 67-182 34-165 (262)
356 2e87_A Hypothetical protein PH 99.4 1.5E-12 5.2E-17 156.0 12.2 156 921-1112 166-335 (357)
357 3lxx_A GTPase IMAP family memb 99.3 8.1E-13 2.8E-17 149.2 8.2 169 917-1112 24-213 (239)
358 2wkq_A NPH1-1, RAS-related C3 99.3 7.5E-13 2.5E-17 156.5 7.9 164 922-1114 155-331 (332)
359 2ged_A SR-beta, signal recogni 99.3 6.3E-13 2.2E-17 144.2 5.7 110 67-183 46-171 (193)
360 1pui_A ENGB, probable GTP-bind 99.3 3.4E-12 1.2E-16 140.5 11.6 163 919-1113 23-199 (210)
361 2zej_A Dardarin, leucine-rich 99.3 8.6E-13 2.9E-17 142.5 6.5 164 923-1113 3-178 (184)
362 1wxq_A GTP-binding protein; st 99.3 1.5E-12 5.2E-17 157.4 9.1 83 70-152 1-114 (397)
363 3dpu_A RAB family protein; roc 99.3 1.4E-12 4.8E-17 164.7 9.0 161 920-1114 39-209 (535)
364 1nrj_B SR-beta, signal recogni 99.3 1.7E-12 5.7E-17 144.0 8.2 146 920-1088 10-169 (218)
365 2p67_A LAO/AO transport system 99.3 9E-13 3.1E-17 156.9 6.2 114 982-1112 146-260 (341)
366 2j69_A Bacterial dynamin-like 99.3 4E-12 1.4E-16 164.5 11.7 118 985-1112 174-324 (695)
367 2g3y_A GTP-binding protein GEM 99.3 2.9E-12 9.9E-17 141.9 8.4 160 920-1112 35-202 (211)
368 2qag_A Septin-2, protein NEDD5 99.3 3.2E-12 1.1E-16 153.2 9.3 155 68-229 36-230 (361)
369 3t34_A Dynamin-related protein 99.3 2.6E-12 8.9E-17 154.2 8.5 155 67-227 32-256 (360)
370 1h65_A Chloroplast outer envel 99.3 1.8E-11 6.3E-16 140.8 14.4 116 922-1052 39-169 (270)
371 1h65_A Chloroplast outer envel 99.3 1.1E-11 3.8E-16 142.6 12.3 116 68-183 38-169 (270)
372 3p32_A Probable GTPase RV1496/ 99.3 2E-12 6.8E-17 154.8 6.1 172 921-1113 78-284 (355)
373 2cjw_A GTP-binding protein GEM 99.3 7.1E-12 2.4E-16 136.5 9.8 159 921-1112 5-171 (192)
374 1wxq_A GTP-binding protein; st 99.3 1.3E-12 4.6E-17 157.9 3.5 82 924-1021 2-114 (397)
375 1udx_A The GTP-binding protein 99.3 2.1E-11 7.1E-16 147.7 13.8 155 68-230 156-323 (416)
376 3r7w_B Gtpase2, GTP-binding pr 99.3 1.3E-11 4.5E-16 143.6 11.4 161 924-1112 1-173 (331)
377 3zvr_A Dynamin-1; hydrolase, D 99.2 1.9E-11 6.6E-16 156.5 13.3 161 66-229 48-275 (772)
378 2f9l_A RAB11B, member RAS onco 99.2 1.4E-11 4.8E-16 134.7 10.2 158 921-1112 4-167 (199)
379 3p32_A Probable GTPase RV1496/ 99.2 1.2E-11 4.2E-16 148.0 8.9 157 67-230 77-282 (355)
380 2p67_A LAO/AO transport system 99.2 2E-11 6.8E-16 145.2 9.9 155 67-230 54-259 (341)
381 1udx_A The GTP-binding protein 99.2 4.7E-11 1.6E-15 144.6 13.1 158 921-1114 156-326 (416)
382 2www_A Methylmalonic aciduria 99.2 9.7E-12 3.3E-16 148.2 5.8 156 68-230 73-277 (349)
383 2ged_A SR-beta, signal recogni 99.2 1.2E-11 4.2E-16 134.0 6.1 127 920-1066 46-186 (193)
384 2wsm_A Hydrogenase expression/ 99.2 2.1E-11 7E-16 135.5 6.6 148 68-229 29-211 (221)
385 2x2e_A Dynamin-1; nitration, h 99.2 3.1E-11 1E-15 144.4 8.4 172 922-1109 31-254 (353)
386 2wsm_A Hydrogenase expression/ 99.2 1.2E-11 4.1E-16 137.4 4.5 170 920-1113 28-214 (221)
387 1oix_A RAS-related protein RAB 99.1 1.2E-10 4.2E-15 126.5 11.9 158 920-1111 27-190 (191)
388 2qpt_A EH domain-containing pr 99.1 5.9E-11 2E-15 149.4 10.2 116 67-182 63-232 (550)
389 1yrb_A ATP(GTP)binding protein 99.1 3.3E-10 1.1E-14 129.3 15.3 114 116-230 109-255 (262)
390 4a9a_A Ribosome-interacting GT 99.1 2.5E-10 8.6E-15 136.1 14.5 110 70-181 73-195 (376)
391 2www_A Methylmalonic aciduria 99.1 5.3E-11 1.8E-15 141.9 8.4 114 982-1112 164-278 (349)
392 2qpt_A EH domain-containing pr 99.1 8.9E-11 3.1E-15 147.8 9.0 132 920-1051 63-232 (550)
393 3zvr_A Dynamin-1; hydrolase, D 99.1 1.6E-10 5.4E-15 148.1 10.2 172 922-1109 51-274 (772)
394 3c5h_A Glucocorticoid receptor 99.1 7.9E-11 2.7E-15 134.3 6.6 85 1008-1111 162-253 (255)
395 2qnr_A Septin-2, protein NEDD5 99.0 2.1E-10 7.1E-15 134.0 8.8 154 69-229 18-211 (301)
396 1jal_A YCHF protein; nucleotid 99.0 1.8E-10 6.1E-15 136.6 7.4 82 70-151 3-108 (363)
397 3t34_A Dynamin-related protein 99.0 2.4E-10 8E-15 137.2 7.7 97 984-1088 135-246 (360)
398 4a9a_A Ribosome-interacting GT 99.0 4.7E-10 1.6E-14 133.7 9.1 113 921-1050 71-195 (376)
399 4fid_A G protein alpha subunit 99.0 1E-09 3.5E-14 128.9 11.7 127 103-229 148-325 (340)
400 2dby_A GTP-binding protein; GD 98.9 6.9E-10 2.3E-14 132.5 6.6 82 70-151 2-111 (368)
401 2hf9_A Probable hydrogenase ni 98.9 2.1E-09 7.3E-14 119.6 10.1 149 67-229 36-221 (226)
402 2qag_C Septin-7; cell cycle, c 98.9 1.6E-09 5.6E-14 131.2 9.3 153 69-227 31-222 (418)
403 1jal_A YCHF protein; nucleotid 98.9 5.9E-09 2E-13 123.6 12.7 82 923-1020 3-108 (363)
404 1yrb_A ATP(GTP)binding protein 98.9 1.2E-09 4E-14 124.7 5.6 115 984-1112 108-256 (262)
405 1cip_A Protein (guanine nucleo 98.8 2.4E-09 8.3E-14 127.2 7.9 127 104-230 181-342 (353)
406 2j37_W Signal recognition part 98.8 1.4E-09 4.8E-14 134.5 5.1 176 920-1110 99-310 (504)
407 2dby_A GTP-binding protein; GD 98.8 9E-09 3.1E-13 122.8 11.5 82 923-1020 2-111 (368)
408 1u0l_A Probable GTPase ENGC; p 98.8 1.2E-09 4.1E-14 127.6 3.4 134 84-227 32-168 (301)
409 2qm8_A GTPase/ATPase; G protei 98.8 1.7E-09 5.9E-14 128.1 3.4 115 981-1112 144-260 (337)
410 1zcb_A G alpha I/13; GTP-bindi 98.7 9.3E-09 3.2E-13 122.6 8.5 126 105-230 190-351 (362)
411 2qm8_A GTPase/ATPase; G protei 98.7 1.2E-08 4.1E-13 120.9 8.0 157 67-230 53-259 (337)
412 3ohm_A Guanine nucleotide-bind 98.7 3.7E-08 1.3E-12 115.4 10.7 124 106-229 157-315 (327)
413 2qag_C Septin-7; cell cycle, c 98.7 3.1E-08 1.1E-12 120.0 9.3 164 923-1112 32-226 (418)
414 2qnr_A Septin-2, protein NEDD5 98.6 5E-08 1.7E-12 113.8 9.2 163 923-1111 19-212 (301)
415 2j37_W Signal recognition part 98.6 4.7E-08 1.6E-12 120.9 9.0 157 67-227 99-308 (504)
416 3e1y_E Eukaryotic peptide chai 98.6 4.5E-08 1.5E-12 107.3 7.4 85 1118-1212 3-91 (204)
417 1azs_C GS-alpha; complex (lyas 98.6 4.1E-08 1.4E-12 117.9 7.5 125 105-229 206-382 (402)
418 2ohf_A Protein OLA1, GTP-bindi 98.6 3.5E-08 1.2E-12 118.1 5.9 85 67-151 20-128 (396)
419 2xtz_A Guanine nucleotide-bind 98.5 2.1E-08 7.2E-13 119.1 3.1 116 115-230 182-343 (354)
420 1cip_A Protein (guanine nucleo 98.5 4.1E-08 1.4E-12 116.7 5.5 133 969-1111 177-342 (353)
421 2hf9_A Probable hydrogenase ni 98.5 8.3E-08 2.8E-12 106.7 7.4 168 921-1111 37-222 (226)
422 2v9k_A Uncharacterized protein 98.5 1.1E-07 3.9E-12 115.1 8.8 97 722-852 410-515 (530)
423 1zcb_A G alpha I/13; GTP-bindi 98.4 1.2E-07 4.2E-12 113.0 5.6 132 970-1111 186-351 (362)
424 3ec1_A YQEH GTPase; atnos1, at 98.4 1E-08 3.5E-13 123.1 -4.1 112 69-183 162-289 (369)
425 3h2y_A GTPase family protein; 98.4 1.5E-08 5.2E-13 121.4 -4.0 113 69-184 160-289 (368)
426 2qag_B Septin-6, protein NEDD5 98.3 9E-07 3.1E-11 106.8 10.5 144 921-1084 41-217 (427)
427 2ohf_A Protein OLA1, GTP-bindi 98.3 4.1E-07 1.4E-11 108.9 5.0 82 923-1020 23-128 (396)
428 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 9.8E-07 3.4E-11 105.9 7.2 86 66-151 17-127 (392)
429 2qag_B Septin-6, protein NEDD5 98.2 3.2E-06 1.1E-10 102.1 11.6 111 72-183 45-191 (427)
430 3l82_B F-box only protein 4; T 98.2 2.3E-06 7.7E-11 92.4 9.0 157 67-228 14-219 (227)
431 2v3c_C SRP54, signal recogniti 98.1 3.1E-06 1.1E-10 103.2 9.1 125 921-1050 98-251 (432)
432 1tq4_A IIGP1, interferon-induc 98.1 1.1E-05 3.8E-10 97.5 13.2 158 67-228 67-249 (413)
433 3sop_A Neuronal-specific septi 98.1 4.8E-06 1.7E-10 95.3 8.9 124 923-1052 3-155 (270)
434 4fid_A G protein alpha subunit 98.1 1.3E-06 4.5E-11 102.7 3.9 133 969-1111 145-326 (340)
435 3ohm_A Guanine nucleotide-bind 98.1 1.9E-06 6.4E-11 100.9 5.1 132 969-1111 151-316 (327)
436 1tq4_A IIGP1, interferon-induc 98.1 1.5E-05 5.1E-10 96.3 12.8 162 922-1114 69-254 (413)
437 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 3.7E-06 1.3E-10 100.9 7.4 84 922-1020 20-127 (392)
438 1azs_C GS-alpha; complex (lyas 98.0 1.8E-06 6.1E-11 103.8 4.3 82 969-1050 201-297 (402)
439 2yv5_A YJEQ protein; hydrolase 98.0 2.9E-06 9.8E-11 98.9 5.7 97 126-227 66-164 (302)
440 3kl4_A SRP54, signal recogniti 98.0 5E-06 1.7E-10 100.8 7.4 151 921-1089 96-276 (433)
441 3dm5_A SRP54, signal recogniti 98.0 1.5E-05 5.1E-10 96.7 10.7 147 921-1084 99-274 (443)
442 1u0l_A Probable GTPase ENGC; p 98.0 4.7E-06 1.6E-10 97.1 5.3 129 986-1149 64-194 (301)
443 3sop_A Neuronal-specific septi 97.9 2.4E-05 8.1E-10 89.6 10.5 113 70-183 3-155 (270)
444 3l2o_B F-box only protein 4; s 97.9 1.6E-05 5.4E-10 89.9 8.5 101 124-229 195-305 (312)
445 2v3c_C SRP54, signal recogniti 97.9 3.5E-06 1.2E-10 102.7 2.9 155 68-226 98-305 (432)
446 3l82_B F-box only protein 4; T 97.9 0.00013 4.5E-09 78.7 14.4 111 986-1112 97-222 (227)
447 2xtz_A Guanine nucleotide-bind 97.9 4.6E-06 1.6E-10 99.0 3.0 119 983-1111 181-343 (354)
448 1puj_A YLQF, conserved hypothe 97.8 6E-05 2E-09 86.8 10.8 101 120-230 3-104 (282)
449 1j8m_F SRP54, signal recogniti 97.8 4E-05 1.4E-09 88.9 9.4 122 922-1050 98-252 (297)
450 1puj_A YLQF, conserved hypothe 97.8 4E-05 1.4E-09 88.3 9.1 102 989-1112 3-105 (282)
451 3dm5_A SRP54, signal recogniti 97.8 8E-05 2.8E-09 90.3 11.9 142 68-223 99-282 (443)
452 2xxa_A Signal recognition part 97.7 3.1E-05 1.1E-09 94.4 6.5 127 920-1050 98-253 (433)
453 1f5n_A Interferon-induced guan 97.6 3E-05 1E-09 97.5 5.8 98 67-165 36-146 (592)
454 3dh3_A Ribosomal large subunit 97.6 3.4E-05 1.2E-09 88.7 5.7 140 663-864 67-215 (290)
455 1f5n_A Interferon-induced guan 97.6 2.3E-05 7.9E-10 98.5 4.3 107 920-1037 36-149 (592)
456 3ec1_A YQEH GTPase; atnos1, at 97.6 5.2E-05 1.8E-09 90.8 7.0 100 125-229 57-159 (369)
457 3h2y_A GTPase family protein; 97.6 4.4E-05 1.5E-09 91.4 5.6 99 125-228 55-156 (368)
458 3kl4_A SRP54, signal recogniti 97.5 0.00011 3.8E-09 89.1 8.6 139 68-220 96-278 (433)
459 2yv5_A YJEQ protein; hydrolase 97.5 4.4E-05 1.5E-09 88.9 4.6 96 995-1107 66-163 (302)
460 1j8m_F SRP54, signal recogniti 97.3 0.00089 3E-08 77.6 12.3 141 68-223 97-282 (297)
461 3cnl_A YLQF, putative uncharac 97.2 0.00014 4.8E-09 82.8 3.9 92 993-1109 5-97 (262)
462 3szr_A Interferon-induced GTP- 97.2 0.00054 1.9E-08 87.3 9.3 67 117-183 148-229 (608)
463 3e70_C DPA, signal recognition 97.2 0.00047 1.6E-08 81.0 7.6 148 921-1088 128-305 (328)
464 3cnl_A YLQF, putative uncharac 97.1 0.00016 5.6E-09 82.2 2.7 91 123-226 4-95 (262)
465 3l2o_B F-box only protein 4; s 97.0 0.002 7E-08 72.9 10.2 103 994-1112 196-307 (312)
466 3e1y_E Eukaryotic peptide chai 96.8 0.0024 8.1E-08 69.7 8.9 82 238-322 2-88 (204)
467 4dzz_A Plasmid partitioning pr 96.8 0.002 6.7E-08 69.9 7.9 64 984-1050 75-143 (206)
468 3szr_A Interferon-induced GTP- 96.7 0.0018 6.2E-08 82.5 8.0 68 985-1052 147-229 (608)
469 1rj9_A FTSY, signal recognitio 96.6 0.0043 1.5E-07 72.0 9.7 127 921-1050 101-260 (304)
470 2yhs_A FTSY, cell division pro 96.6 0.0023 7.8E-08 78.3 7.1 128 920-1050 291-451 (503)
471 3e70_C DPA, signal recognition 96.6 0.0026 8.8E-08 74.7 7.3 143 67-223 127-311 (328)
472 2ffh_A Protein (FFH); SRP54, s 96.6 0.0022 7.4E-08 77.7 6.7 125 921-1050 97-250 (425)
473 1zu4_A FTSY; GTPase, signal re 96.4 0.0029 9.9E-08 74.0 6.6 124 920-1050 103-267 (320)
474 1t9h_A YLOQ, probable GTPase E 96.4 0.0031 1E-07 73.2 6.1 85 1005-1106 83-170 (307)
475 1xe1_A Hypothetical protein PF 96.4 0.012 4E-07 57.2 9.1 78 1120-1208 33-113 (116)
476 2px0_A Flagellar biosynthesis 96.3 0.0042 1.4E-07 71.9 7.1 24 67-90 103-126 (296)
477 1t9h_A YLOQ, probable GTPase E 96.2 0.004 1.4E-07 72.2 6.0 87 135-226 82-171 (307)
478 2xxa_A Signal recognition part 96.2 0.0067 2.3E-07 73.9 8.2 65 114-181 182-253 (433)
479 2px0_A Flagellar biosynthesis 96.1 0.0031 1.1E-07 73.0 4.5 125 922-1050 105-252 (296)
480 1v9k_A Ribosomal large subunit 96.1 0.0032 1.1E-07 70.0 4.1 70 663-732 9-90 (228)
481 3q5d_A Atlastin-1; G protein, 96.0 0.0061 2.1E-07 74.2 6.7 25 68-92 66-90 (447)
482 1vma_A Cell division protein F 96.0 0.0039 1.3E-07 72.4 4.6 147 921-1084 103-284 (306)
483 1xe1_A Hypothetical protein PF 95.7 0.016 5.6E-07 56.2 6.8 69 473-547 34-102 (116)
484 3q5d_A Atlastin-1; G protein, 95.7 0.017 5.9E-07 70.2 8.5 26 920-945 65-90 (447)
485 1vma_A Cell division protein F 95.6 0.023 7.8E-07 65.9 8.8 24 68-91 103-126 (306)
486 2gml_A Ribosomal large subunit 95.5 0.0055 1.9E-07 68.0 2.9 66 664-732 15-89 (237)
487 4dzz_A Plasmid partitioning pr 95.4 0.054 1.8E-06 58.3 10.4 65 115-182 75-144 (206)
488 2yhs_A FTSY, cell division pro 95.4 0.03 1E-06 68.6 9.0 25 67-91 291-315 (503)
489 2rcn_A Probable GTPase ENGC; Y 95.3 0.041 1.4E-06 65.0 9.9 87 135-226 126-213 (358)
490 1ls1_A Signal recognition part 95.3 0.011 3.9E-07 68.2 5.0 127 921-1050 97-250 (295)
491 1zu4_A FTSY; GTPase, signal re 95.1 0.033 1.1E-06 65.0 8.1 65 115-182 191-268 (320)
492 2rcn_A Probable GTPase ENGC; Y 95.0 0.046 1.6E-06 64.6 9.0 83 1005-1106 127-212 (358)
493 2ffh_A Protein (FFH); SRP54, s 94.6 0.021 7.2E-07 69.1 4.9 65 114-181 179-250 (425)
494 1vio_A Ribosomal small subunit 94.4 0.0094 3.2E-07 66.9 1.1 67 665-732 64-139 (243)
495 3b9q_A Chloroplast SRP recepto 94.4 0.087 3E-06 61.0 9.2 133 921-1059 99-267 (302)
496 1rj9_A FTSY, signal recognitio 94.4 0.057 1.9E-06 62.6 7.7 24 68-91 101-124 (304)
497 1ksk_A Ribosomal small subunit 94.2 0.011 3.7E-07 66.0 0.8 69 663-732 63-140 (234)
498 1d1n_A Initiation factor 2; be 94.0 0.078 2.7E-06 50.1 6.1 79 1124-1208 9-90 (99)
499 2i82_A Ribosomal large subunit 93.8 0.031 1.1E-06 61.5 3.7 70 663-735 19-101 (217)
500 3cwq_A Para family chromosome 93.7 0.048 1.6E-06 59.5 5.0 120 71-194 2-147 (209)
No 1
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=4.3e-100 Score=874.75 Aligned_cols=328 Identities=54% Similarity=0.911 Sum_probs=281.6
Q ss_pred EEecceecccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCC
Q psy1758 1193 LITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDD 1272 (1527)
Q Consensus 1193 ai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~ 1272 (1527)
+++|++++.+|||||++++|.+||++++++|+++|+|.|+++||+|++++++|+++|+++|.||+++||||+|+++++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEecceEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecC
Q psy1758 1273 SIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINE 1352 (1527)
Q Consensus 1273 ~g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~g~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~ 1352 (1527)
+ |+|+|||||||+|++|+|||||+|+.+++|+|+|||++|++||||++++|+||++|+|+||++|++|||++.+|++.+
T Consensus 82 ~-~~v~G~GELHLeIl~ErLrrEg~ev~v~~P~V~YrEt~G~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~ 160 (332)
T 3e3x_A 82 K-FRVSGRGELHLSILIENMRREGFELAVSRPEVIIXEEDGQLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDG 160 (332)
T ss_dssp E-EEEEESSHHHHHHHHHHHHHHTBCEEECCCEECCEEETTEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECS
T ss_pred e-EEEEeeCHHHHHHHHHHHHhcCceEEEeCCEEEEEEECCEEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceECC
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeec-cccccccccccccceeecCCCchhHHHHHHHHhhcCc
Q psy1758 1353 KERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF-YNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGR 1431 (1527)
Q Consensus 1353 ~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~-~~~~~~~i~~~~~g~li~~~~g~~~~~~l~~~~~rG~ 1431 (1527)
+++++|+|.+|+|+|+||+++|+|+|+|+|+|+|+|+||+|+ + |++..|.||+|||+++|+||+|||+++|+||+
T Consensus 161 ~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~p----g~i~~r~~g~lv~~~~g~~~~y~l~~~~~rg~ 236 (332)
T 3e3x_A 161 KGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXG----GNIGQRVNGVLIANAAGKALTNALFNLQERGR 236 (332)
T ss_dssp SSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCC----CSCSCCCCCEEEESSCEECCHHHHHHHTTSEE
T ss_pred CCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCC----CccccccCceEEEcCCCcEeHhhhhhHHhhce
Confidence 689999999999999999999999999999999999999999 6 99999999999999999999999999999999
Q ss_pred ccccCccccccceeecccCCCCceeeecccccccccccccCCCcceeecCCcccCHHHHHhcccCCeeEEecCCceeeec
Q psy1758 1432 LFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRK 1511 (1527)
Q Consensus 1432 ~fv~~~~~vy~gm~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk 1511 (1527)
+||.||++||+|||||||+|+|||+|||||+||||||||||+|++++|+||+.||||||||||+|||||||||++|||||
T Consensus 237 ~fv~pg~~vy~gmivg~~~r~~dl~vn~~k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~de~vevtp~~ir~rk 316 (332)
T 3e3x_A 237 LFIGHGVEVYEGMVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVMTLEQALEFIDDDELVEVTPESIRIRK 316 (332)
T ss_dssp ESCCTTCEECTTEEEEEESSSSCEEECSCC--------------CCCCCCCCCCCHHHHHHHCCTTEEEEECSSCEEEEE
T ss_pred EEecCCCeEECCeEEEecCCcCCcEEecccccccccccccCCccceEecCCcccCHHHHHhhhcCCeeEEEcCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHhhhcc
Q psy1758 1512 RFLKENERKKKLHK 1525 (1527)
Q Consensus 1512 ~~~~~~~~~~~~~~ 1525 (1527)
++|++++|||++|+
T Consensus 317 ~~l~~~~r~~~~~~ 330 (332)
T 3e3x_A 317 XFLTESDRXRASRS 330 (332)
T ss_dssp SSCSHHHHHHHC--
T ss_pred ccCChhHhHHhhhc
Confidence 99999999998775
No 2
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=1.7e-88 Score=836.16 Aligned_cols=486 Identities=56% Similarity=0.904 Sum_probs=451.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|+++|+++||+|||||||+++|++..+...+.+|+|+++..+.+.+++..++|||||||++|..++.++++.+|+++||
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 58899999999999999999999998887778889999999888888888999999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
+|++++.++||.+++..+...++|+|+++||+|+.+++.+++...+......++.|++.+|++++||++|.|+++|+++|
T Consensus 82 Vda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I 161 (501)
T 1zo1_I 82 VAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAI 161 (501)
T ss_dssp EETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHT
T ss_pred eecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhh
Confidence 99999999999999999999999999999999998755444443333334445566667899999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEe
Q psy1758 227 SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEI 306 (1527)
Q Consensus 227 ~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I 306 (1527)
..+++..+.+.+++.|+.+.+++++.+++.|++++++|.+|+|++||.+++|+.+++||+|+..++..+++|+||+++.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~~~kVr~i~~~~g~~v~~a~~g~~V~i 241 (501)
T 1zo1_I 162 LLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEI 241 (501)
T ss_dssp TTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBSSCEEEEECCTTTTSEEEECCSSCSSS
T ss_pred hhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccceeEEEEEEecCCCcCcEeccCCcEEE
Confidence 76544445566677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHH
Q psy1758 307 QGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESL 386 (1527)
Q Consensus 307 ~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l 386 (1527)
.|+.+.|.+|+.+.++.+++.|++++++|+.+.++.+++++....+++++.++.+++.+.+++|||||++||+|||.++|
T Consensus 242 ~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l 321 (501)
T 1zo1_I 242 LGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSL 321 (501)
T ss_dssp EEECSCCCTTEEEEEECSSCTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHH
T ss_pred eCCCCCCCCCCEEEecCCHHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHH
Confidence 99999999999999999999999999999988777777777777888888888777888999999999999999999999
Q ss_pred HhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCc
Q psy1758 387 KNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPL 466 (1527)
Q Consensus 387 ~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~ 466 (1527)
.++++++++++|++++||+||++||.+|++++|+||||||+++++++++|++.||+|++|||||||+|+++++|+++|+|
T Consensus 322 ~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~ 401 (501)
T 1zo1_I 322 LKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSP 401 (501)
T ss_dssp TTTTCCCSBCCCCCSSSSSSHHHHSTTTCGGGCCEEECSSCCCHHHHTTSCSSSSCEEESCCCSHHHHHTHHHHTTTSST
T ss_pred HhhcccccceEEEEeccCCCCHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeEeEEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhh
Q psy1758 467 EKKENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIE 546 (1527)
Q Consensus 467 ~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~ 546 (1527)
+++|+++|+|+|+++|+.+|.|+||||+|++|++++|+++||+|||++||+|+|.||||+|+||+||++|+|||+.++.|
T Consensus 402 ~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ecgi~~~~~ 481 (501)
T 1zo1_I 402 ELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNY 481 (501)
T ss_dssp TCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCEEEEBCCC
T ss_pred eeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCEEEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh
Q psy1758 547 NQIQRD 552 (1527)
Q Consensus 547 ~~i~~~ 552 (1527)
++|+..
T Consensus 482 ~~~~~g 487 (501)
T 1zo1_I 482 NDVRTG 487 (501)
T ss_dssp TTCCTT
T ss_pred CCCCCC
Confidence 998873
No 3
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=8.7e-87 Score=827.38 Aligned_cols=485 Identities=42% Similarity=0.668 Sum_probs=439.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEe-CCeEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~-~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+|+|+|+++||+|||||||+++|++..+...+.+|+|+++..+.+.+ ++.+++|||||||++|..++.++++.+|++||
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 57899999999999999999999999988888999999999888877 45689999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 146 VVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
|+|++++.++||.+++..+...++|+++|+||+|+.+.+.......+.......+.|+..++++++||++|.|+++|++.
T Consensus 82 VVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~ 161 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEA 161 (537)
T ss_dssp ECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHH
T ss_pred EEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHH
Confidence 99999999999999999999999999999999999876655555555555555667777789999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceE
Q psy1758 226 ISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVE 305 (1527)
Q Consensus 226 l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~ 305 (1527)
|..+.+..+.+.+++.|+.+.|++++.+++.|++++++|.+|+|++||.+++|..+++||+|+.++|+++++|.||++|.
T Consensus 162 I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g~~~~kVr~i~~~~g~~v~~A~~G~~V~ 241 (537)
T 3izy_P 162 TIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSMPVG 241 (537)
T ss_dssp HHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCSSCCEEEEEEEECCCCCSCCSCCSTTCC
T ss_pred HHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeCCceEEEEEEEcCCCCCCcEEcCCCEEE
Confidence 98877666666677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHH-----------------hhhh---------hhhHHHh-
Q psy1758 306 IQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQ-----------------KLHK---------TENMFND- 358 (1527)
Q Consensus 306 I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~-----------------~~~~---------~~~~~~~- 358 (1527)
|.|+++.|.+||+|.++.+++.||+++++|+.+.++.++.++ .... +..++.+
T Consensus 242 i~g~~~~~~~Gd~l~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (537)
T 3izy_P 242 IIGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREK 321 (537)
T ss_dssp CCSSEEEEEEESSCCSCCSSCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCEEEecCChHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhhhhccchhhhhhhhhhhhh
Confidence 999999999999999999999999999998876554433210 0000 1111111
Q ss_pred ----------hccccceeEeEEEEeccCCcHHHHHHHHHhcCC-CceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCC
Q psy1758 359 ----------INKEKVKNLLIIIKTDVYGSREVLTESLKNLST-DKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVR 427 (1527)
Q Consensus 359 ----------~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~-~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~ 427 (1527)
..+.+.+.+|+|||||++||+|||.++|.++++ ++|+++|++++||+||++||.+|++++|+||||||+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~ 401 (537)
T 3izy_P 322 RQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVN 401 (537)
T ss_dssp HHHCTTTTCCCCCCCCCCCCBEEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHHHSCCEEESSCC
T ss_pred hhhhhccchhhcccccceeeEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEEEecCCCCCHHHHHHHHhcCCeEEEecCC
Confidence 113456889999999999999999999999998 899999999999999999999999999999999999
Q ss_pred CChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceeeeeeEeEEEeEEEEcCC---CCeEEEEEEeeeEEeeCC
Q psy1758 428 ADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQVILVNK---VSKIAGCYILEGLIRRDS 504 (1527)
Q Consensus 428 ~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~k---~~~iaGc~V~~G~i~~~~ 504 (1527)
++++++++|++.||+|++|||||+|+||+++.|+++|+|+++|+++|+|+|+++|.+++ .|+||||+|++|++++|+
T Consensus 402 ~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~ 481 (537)
T 3izy_P 402 AGNVIQQLAAKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQK 481 (537)
T ss_dssp BCHHHHHHHHHHTCCCBCSCSSCCSHHHHHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSS
T ss_pred CCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999985 578999999999999999
Q ss_pred eEEEeeCCeEEEEEEeceecccccccceeecCccccccchh-hhhhhh
Q psy1758 505 KIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRI-ENQIQR 551 (1527)
Q Consensus 505 ~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~-~~~i~~ 551 (1527)
++||+|||++||+|+|.||||+|+||+||++|+|||+.++. |++|+.
T Consensus 482 ~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~~~~~~ 529 (537)
T 3izy_P 482 KFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKIEFKV 529 (537)
T ss_dssp EEEEESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSCSSCSC
T ss_pred eEEEecCCEEEEEEEEehhcccCcccceEcCCCEEEEEEcCcccCCCC
Confidence 99999999999999999999999999999999999999998 999886
No 4
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.1e-82 Score=824.27 Aligned_cols=454 Identities=27% Similarity=0.423 Sum_probs=392.8
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEec-------CeEE
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYN-------GTRI 987 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~-------~~~i 987 (1527)
.+.+++|||||+||+|||||||+++||+.+|.+.+.+.++. ++||+++.|++|||||.++..++.|+ ++.|
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 45689999999999999999999999999999988777654 79999999999999999999999996 6899
Q ss_pred EEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh
Q psy1758 988 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 988 niiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~ 1067 (1527)
||||||||.||.+||+++|+++|+||+||||.+|+++||+.+|++|.+.++|+|+||||||++.+++..+++++++.|..
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH 167 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCS
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886631
Q ss_pred hc--------cc-----------------------------------------------------c--------------
Q psy1758 1068 LC--------AT-----------------------------------------------------E-------------- 1072 (1527)
Q Consensus 1068 l~--------~~-----------------------------------------------------~-------------- 1072 (1527)
.. .. +
T Consensus 168 ~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~ 247 (709)
T 4fn5_A 168 TPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELS 247 (709)
T ss_dssp CEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCC
T ss_pred ceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCcc
Confidence 00 00 0
Q ss_pred -------------cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC--------------------CCCC
Q psy1758 1073 -------------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK--------------------DNSN 1119 (1527)
Q Consensus 1073 -------------~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~--------------------~~~~ 1119 (1527)
...-+|+++.||+++. |+.+||+++++++|+|. ++++
T Consensus 248 ~~~~~~~l~~~~~~~~~~pv~~gsa~~~~----------gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~ 317 (709)
T 4fn5_A 248 EAEIKEGLRLRTLACEIVPAVCGSSFKNK----------GVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDN 317 (709)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECBTTTTB----------THHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTT
T ss_pred HHHHHHHHHHhhhhceeeeeeeeecccCC----------chHHHHHHHHhhCCCCcccccccccCCccccccccccCCcc
Confidence 0012588999999987 99999999999999993 4678
Q ss_pred CCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEeccee
Q psy1758 1120 NPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEE 1199 (1527)
Q Consensus 1120 ~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~ 1199 (1527)
+||+++|||+.+|++.|+++|+|||||+|++||+|++... | ...+|++++.++|.++.++++|.|||||+|.|+++
T Consensus 318 ~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~ 393 (709)
T 4fn5_A 318 EPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVK--G--KKERVGRMVQMHANQREEIKEVRAGDIAALIGMKD 393 (709)
T ss_dssp SCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTT--C--CCCBCCCEECCCSSCCCEESEECTTCEEEECSCSS
T ss_pred CcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecC--C--cEEeecceeEeecceeeEeeeecCCCeeeecCCCc
Confidence 9999999999999999999999999999999999987654 3 45789999999999999999999999999999999
Q ss_pred cccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEe
Q psy1758 1200 ICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSG 1279 (1527)
Q Consensus 1200 ~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g 1279 (1527)
+.+|||||+.+.+..+|++++++|++++++.|.++ .+.++|.++|.++.++||+|+++.++++|+ ++|+|
T Consensus 394 ~~~gdTl~~~~~~~~~~~~~~~~Pvv~vavep~~~---------~d~~kL~~~L~kL~~eDPsl~v~~~eetge-~vi~g 463 (709)
T 4fn5_A 394 VTTGDTLCSIEKPIILERMDFPEPVISVAVEPKTK---------ADQEKMGIALGKLAQEDPSFRVKTDEESGQ-TIISG 463 (709)
T ss_dssp CCTTCEEECSSSCCBCC----CCCSEEEEECBSST---------TTHHHHHHHHHHHHHHCTTCEEEEETTTTE-EEEEE
T ss_pred CccCCEecCCCccccCCCCCCCCcceEEEEecCCH---------HHhhhhHHHHHHHHHhCCeEEEEEecCCCc-EEEEE
Confidence 99999999999999999999999999999988654 146899999999999999999999999999 99999
Q ss_pred cchhHHHHHHHHHHhc-CcEEEEecCeeeEEEe--c--------------------------------------------
Q psy1758 1280 RGELHLTILIENMRRE-GYELSVSRPRVIFKTL--N-------------------------------------------- 1312 (1527)
Q Consensus 1280 ~GelhL~vl~e~lrre-g~ev~vs~P~V~yre~--~-------------------------------------------- 1312 (1527)
+|||||+|++++|||+ |+|+.+++|+|+|||+ .
T Consensus 464 ~GELHLei~l~rLr~e~gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~ 543 (709)
T 4fn5_A 464 MGELHLDIIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFE 543 (709)
T ss_dssp SCHHHHHHHHHHHHTTTCCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEE
T ss_pred ECHHHHHHHHHHHHHHhCceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEe
Confidence 9999999999999976 9999999999999984 0
Q ss_pred --------------------------c----------------------------------------------eEeeeeE
Q psy1758 1313 --------------------------G----------------------------------------------ELYEPYE 1320 (1527)
Q Consensus 1313 --------------------------g----------------------------------------------~llEP~~ 1320 (1527)
| ++||||+
T Consensus 544 ~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~ 623 (709)
T 4fn5_A 544 NEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIM 623 (709)
T ss_dssp ECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEE
T ss_pred cccccccCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceE
Confidence 0 3789999
Q ss_pred EEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1321 NLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1321 ~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
.++|.||++|+|+||++|++|||++++|++.+ +...|++++|++|++||.++||++|+|+|+|+++|+||++++
T Consensus 624 ~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~-~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp 697 (709)
T 4fn5_A 624 KVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTV-SGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAP 697 (709)
T ss_dssp EEEEEEETTTHHHHHHHHGGGTCEEEEEEECS-SEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECC
T ss_pred EEEEEECHHHHHHHHHHHHhcCCEEeceEecC-CCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCC
Confidence 99999999999999999999999999999864 566799999999999999999999999999999999999998
No 5
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2.3e-81 Score=788.17 Aligned_cols=482 Identities=26% Similarity=0.399 Sum_probs=413.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-----eEEEEEeCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----TRINIIDTP 993 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----~~iniiDTP 993 (1527)
.+++|||+|+||+|||||||+++|++.++.+.+.+ ...+++|+.+.|++||+|+.++...+.|.. +.+||||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP 81 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP 81 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc-ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC
Confidence 46789999999999999999999999888876554 356889999999999999999999998863 899999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
||.||..++.++++.+|++||||||++|+++||..+|..+...++|+|+|+||+|+++++++++.+++.+.+ +...
T Consensus 82 Gh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~l---g~~~- 157 (600)
T 2ywe_A 82 GHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVL---GLDP- 157 (600)
T ss_dssp CSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTS---CCCG-
T ss_pred CcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhh---CCCc-
Confidence 999999999999999999999999999999999999999999999999999999999988877777776643 2111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCE
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~ 1153 (1527)
.+++++||++|. |+++|+++|.+++|+|..+.++||+++|+++++|+|.|+++++||++|++++||.
T Consensus 158 ---~~vi~vSAktg~----------GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~ 224 (600)
T 2ywe_A 158 ---EEAILASAKEGI----------GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDK 224 (600)
T ss_dssp ---GGCEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCE
T ss_pred ---ccEEEEEeecCC----------CchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCE
Confidence 248999999998 9999999999999999998999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe-c---ceecccCCeeeCCCCC--CCCCCCccCCCceeE
Q psy1758 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTI 1227 (1527)
Q Consensus 1154 v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~iGdTi~~~~~~--~~l~~~~~~~P~l~~ 1227 (1527)
|.++++ + ...+|.+++.+.+ ++.+++++.||||+++. | ++++.+|||||+.++| .++|+++.++|++++
T Consensus 225 I~~~~~--~--~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~ 299 (600)
T 2ywe_A 225 IMLMST--G--KEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYA 299 (600)
T ss_dssp EEETTT--T--EEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCCSCCCCCCCCEEE
T ss_pred EEeccc--c--ceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCccccccCCCCCCCcEEEE
Confidence 999876 3 4578999988765 68999999999999874 5 5588999999998887 689999999999999
Q ss_pred EEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCC--CCeEEEEecchhHHHHHHHHHHhc-CcEEEEecC
Q psy1758 1228 NFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRP 1304 (1527)
Q Consensus 1228 ~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~--~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P 1304 (1527)
.+.|++++ ++++|+++|.|+.++||+|+++++.+. +.||+|+|||||||+|++|||+|| |+|+.+++|
T Consensus 300 ~i~p~~~~---------d~~~l~~aL~kL~~eD~sl~~~~et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~~~P 370 (600)
T 2ywe_A 300 GIYPAEDT---------TYEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAP 370 (600)
T ss_dssp EEEECTTC---------CHHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred Eeeccccc---------cHHHHHHHHHHHhhhCCEEEEEECCccccccceEEEeccHHHHHHHHHHHHhhcCceEEEEee
Confidence 99987752 468999999999999999999976332 568999999999999999999987 999999999
Q ss_pred eeeEEEe---cc-------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEe
Q psy1758 1305 RVIFKTL---NG-------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRI 1362 (1527)
Q Consensus 1305 ~V~yre~---~g-------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~v 1362 (1527)
+|+|||+ +| .+||||++++|.+|+||+|+||++|++|||++++|++.++++++|+|++
T Consensus 371 ~V~yreti~~~g~~~~~~~p~~~p~~~~~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~ 450 (600)
T 2ywe_A 371 NVIYRVKKKFTDEVIEVRNPMDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEM 450 (600)
T ss_dssp EECEEEEETTCSSCEEESSGGGSCSCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEEecCCCcEEEEeChhhCCCCCcccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCCCEEEEEEEE
Confidence 9999994 57 8999999999999999999999999999999999999766899999999
Q ss_pred chhhh-cChHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHH--HHhhcCcccccCccc
Q psy1758 1363 PSRGL-IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLW--KLQDRGRLFINHNDL 1439 (1527)
Q Consensus 1363 P~~~l-~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~--~~~~rG~~fv~~~~~ 1439 (1527)
|++|| +||+++|+|+|+|+|+|+|+|+||+|++ ..+-..+++++..+|+|+.+| +++.||+.+|..-.+
T Consensus 451 P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~--------~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (600)
T 2ywe_A 451 PLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSD--------LIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRE 522 (600)
T ss_dssp EHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECC--------EEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHHH
T ss_pred cHHHHHhhHHHhhhhcCCCeEEEEEEeccceEcc--------ccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999 6999999999999999999999999986 234467788889999999999 488999998876554
Q ss_pred c
Q psy1758 1440 V 1440 (1527)
Q Consensus 1440 v 1440 (1527)
+
T Consensus 523 ~ 523 (600)
T 2ywe_A 523 T 523 (600)
T ss_dssp H
T ss_pred h
Confidence 4
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=4.3e-84 Score=829.06 Aligned_cols=472 Identities=22% Similarity=0.299 Sum_probs=423.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
+||||||+||+|||||||+++||+.+|.+++.+.++. ++||+++.|++|||||.++..++.|++++|||||||||.||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 5899999999999999999999999999999888764 79999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc--------
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA-------- 1070 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~-------- 1070 (1527)
.+|++++|+++|+||+||||.+|+++||+.+|++|.++++|+|+||||||++.+++..+++++++.|.....
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~ 160 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELY 160 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEee
Confidence 999999999999999999999999999999999999999999999999999999999999999876631000
Q ss_pred -------------------c---------------------------ccccCCcEEEeccccCCcCCCcccccCCChhHH
Q psy1758 1071 -------------------T---------------------------EEQLDFPVIYTSALHGYANENSKARQGNMIPLF 1104 (1527)
Q Consensus 1071 -------------------~---------------------------~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll 1104 (1527)
. ....-+|++++||+++. |+++||
T Consensus 161 ~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LL 230 (638)
T 3j25_A 161 PNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNI----------GIDNLI 230 (638)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCC----------SHHHHH
T ss_pred ccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCC----------CchhHh
Confidence 0 00012799999999998 999999
Q ss_pred HHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEee
Q psy1758 1105 EAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVN 1184 (1527)
Q Consensus 1105 ~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~ 1184 (1527)
+++.+++|+|..+.+.||+++|||+.+|++.|+++++||+||+|++||.|++... .+.++.+++.++|.++.+++
T Consensus 231 d~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~-----~~~~v~~l~~~~g~~~~~v~ 305 (638)
T 3j25_A 231 EVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK-----EKIKVTEMYTSINGELCKID 305 (638)
T ss_dssp HHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC-----CCSSBCCCCSSCCCCBSCCC
T ss_pred hhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC-----cceeEEeeeccccccccccc
Confidence 9999999999998899999999999999999999999999999999999976543 34689999999999999999
Q ss_pred eeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceE
Q psy1758 1185 EALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLR 1264 (1527)
Q Consensus 1185 ~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~ 1264 (1527)
+|.|||||++.| ..+.+|||+++...+..++.++.++|++++++.|.+. .+.++|.++|.++.++||+|+
T Consensus 306 ~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv~~~aiep~~~---------~d~~kL~~aL~kL~~eDPsl~ 375 (638)
T 3j25_A 306 RAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKP---------EQREMLLDALLEISDSDPLLR 375 (638)
T ss_dssp TTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCCCCCEEECCSH---------HHHHHHHHHHHHHHHTCTTCC
T ss_pred ccccceEEEEec-cccccCceecCCCCcccccCccCCCccceeeeccCCh---------HHHHHHHHHHHHHhhcCCeeE
Confidence 999999999988 5678999999988887888899999999999987542 246899999999999999999
Q ss_pred EEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCeeeEEEe-----c--------------------------
Q psy1758 1265 VTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL-----N-------------------------- 1312 (1527)
Q Consensus 1265 v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~V~yre~-----~-------------------------- 1312 (1527)
++.++++++ ++|+|||||||+|+++||||+ |+|+.+++|+|+|||+ +
T Consensus 376 v~~~~et~e-~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~~ 454 (638)
T 3j25_A 376 YYVDSTTHE-IILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLG 454 (638)
T ss_dssp CCCCSSSSC-CCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCEECCCCCSSSCCCCCCCCEECCCCCSS
T ss_pred EEecCCCce-EEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccceEEEEEecCCCCceEEEEEEEecccCC
Confidence 999999999 999999999999999999976 9999999999999984 0
Q ss_pred -----------------------------------------------------------------------------ceE
Q psy1758 1313 -----------------------------------------------------------------------------GEL 1315 (1527)
Q Consensus 1313 -----------------------------------------------------------------------------g~l 1315 (1527)
.++
T Consensus 455 ~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~Gl~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~L 534 (638)
T 3j25_A 455 SGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTEL 534 (638)
T ss_dssp CCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSSSSCCCCCSCCCCCCCCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBC
T ss_pred CCcEEEeeeecccchhhhhhHHhhhHHHHHhccccCCcccceEEEEEECcccCCCCCHHHHHHHHHHHHHHHHHHCCCEE
Confidence 036
Q ss_pred eeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1316 YEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1316 lEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
||||+.++|.||++|+|+||++|++|||++++|+.. +++++|++++|++||+||.++|+|+|+|+|+|+++|+||++++
T Consensus 535 LEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vp 613 (638)
T 3j25_A 535 LEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLK-NNEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTT 613 (638)
T ss_dssp CCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCC-TTEEEEECCCSSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCC
T ss_pred EcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEec-CCeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEEEECceEECC
Confidence 899999999999999999999999999999999985 5789999999999999999999999999999999999999998
Q ss_pred ccccccccccccceeecCCCchhHHHHHHHH
Q psy1758 1396 NKSKYDLGKRRNGVLISQYSGKAVAYSLWKL 1426 (1527)
Q Consensus 1396 ~~~~~~i~~~~~g~li~~~~g~~~~~~l~~~ 1426 (1527)
|+...+..- ....-+-.-|.++.+
T Consensus 614 ----gdp~~~~~~---~~~~~d~~~~~~~k~ 637 (638)
T 3j25_A 614 ----GEPVCQPRR---PNSRIDKVRYMFNKI 637 (638)
T ss_dssp ----SCCSCCCCC---CCCCHHHHHHHHHHH
T ss_pred ----CCccccccC---CCChhhHHHHHHhcc
Confidence 665433211 223445556666654
No 7
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1e-79 Score=775.48 Aligned_cols=480 Identities=26% Similarity=0.406 Sum_probs=405.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-----CeEEEEEeCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-----GTRINIIDTPG 994 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----~~~iniiDTPG 994 (1527)
+++|||+|+||+|||||||+++|++.+|.+.+.. ...+++|+.+.|++||+|+.++...+.|. ++.+|||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPG 80 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPG 80 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccc-ccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCC
Confidence 4689999999999999999999999988877653 35689999999999999999999999996 38999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
|.||..++.++++.+|++|+||||++|+++||..+|..+...++|+|+|+||+|+++++++++.+++.+.+. ..
T Consensus 81 h~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg---~~--- 154 (599)
T 3cb4_D 81 HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVG---ID--- 154 (599)
T ss_dssp CGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTC---CC---
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhC---CC---
Confidence 999999999999999999999999999999999999999999999999999999999888888787776542 11
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEE
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDV 1154 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v 1154 (1527)
..+++++||++|. |+++|+++|.+++|+|..+.++||+++|+++++|+|.|+++++||++|+|++||.+
T Consensus 155 -~~~vi~vSAktg~----------GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v 223 (599)
T 3cb4_D 155 -ATDAVRCSAKTGV----------GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223 (599)
T ss_dssp -CTTCEEECTTTCT----------THHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEE
T ss_pred -cceEEEeecccCC----------CchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEE
Confidence 1248999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe-c---ceecccCCeeeCCCCC--CCCCCCccCCCceeEE
Q psy1758 1155 VIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTIN 1228 (1527)
Q Consensus 1155 ~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~iGdTi~~~~~~--~~l~~~~~~~P~l~~~ 1228 (1527)
.++++ + ...+|.+++.+.+ ++++++++.|||++++. | ++++.+|||||+.+++ .++|++..++|++.+.
T Consensus 224 ~~~~~--~--~~~~v~~i~~~~~-~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~ 298 (599)
T 3cb4_D 224 KVMST--G--QTYNADRLGIFTP-KQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAG 298 (599)
T ss_dssp EETTT--C--CEEECCEEEEESS-SEEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCCTTCCCCCCCEEEE
T ss_pred Eeccc--c--ceeEEeeeeeccC-CceECCEEcCCCeeEeeccccccccCccCCEeeecCCccccccccccCCCcceEEE
Confidence 99876 3 3578999988875 58899999999998774 4 5588999999999888 7899999999999999
Q ss_pred EEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCC--CCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCe
Q psy1758 1229 FMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRPR 1305 (1527)
Q Consensus 1229 ~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~--~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~ 1305 (1527)
+.|.+++ +.++|.++|.++.++||+|+++++.+. ..||+|++||+|||+|++|||+|| |+|+.+++|+
T Consensus 299 i~p~~~~---------d~~~l~~aL~kL~~eD~sl~~~~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~~~P~ 369 (599)
T 3cb4_D 299 LFPVSSD---------DYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPT 369 (599)
T ss_dssp EEESSGG---------GHHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEECCCE
T ss_pred EEecCcc---------CHHHHHHHHHHHHhhCcEEEEEeccccccccceEEEeccHHHHHHHHHHHHHHcCceEEEEeee
Confidence 9987642 468999999999999999999965332 567999999999999999999987 9999999999
Q ss_pred eeEEEe--cc------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechh
Q psy1758 1306 VIFKTL--NG------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSR 1365 (1527)
Q Consensus 1306 V~yre~--~g------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~ 1365 (1527)
|+|||+ +| .+||||++++|.+|+||+|+||++|++|||++++|++.+ ++++|+|++|++
T Consensus 370 V~yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~-~~~~i~~~~P~~ 448 (599)
T 3cb4_D 370 VVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG-NQVALTYEIPMA 448 (599)
T ss_dssp ECEEEEESSSCEEEESSGGGSCCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCT-TEEEEEEEEEHH
T ss_pred EEEEEEecCCceEEecChhhCCCccccchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecC-CeEEEEEEecHH
Confidence 999994 66 799999999999999999999999999999999999975 599999999999
Q ss_pred hh-cChHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHH--HHhhcCcccccCcccc
Q psy1758 1366 GL-IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLW--KLQDRGRLFINHNDLV 1440 (1527)
Q Consensus 1366 ~l-~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~--~~~~rG~~fv~~~~~v 1440 (1527)
|| +||+++|+|+|+|+|+|+|+|+||+|++ .+ +-.++++++..+|+|+.+| +++.||+.+|..-.++
T Consensus 449 e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~---~~-----~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (599)
T 3cb4_D 449 EVVLDFFDRLKSTSRGYASLDYNFKRFQASD---MV-----RVDVLINGERVDALALITHRDNSQNRGRELVEKMKDL 518 (599)
T ss_dssp HHHTTTHHHHHHHTTSCCEEEEEEEEEEECC---EE-----EEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCcEEEEEEEecCceEec---cc-----ccccccCCcEecccceeccHHHHHHHHHHHHHHHHhh
Confidence 99 6999999999999999999999999986 23 4456777778899999999 4889999888765543
No 8
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=6.1e-76 Score=759.63 Aligned_cols=453 Identities=29% Similarity=0.432 Sum_probs=414.6
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecC-------eEEE
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNG-------TRIN 988 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~-------~~in 988 (1527)
+.+++|||+|+||+|||||||+++|++.++.+.+.+.++ .+++|+.+.|+++|+|+.+....+.|++ +.+|
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 356789999999999999999999999888877665543 3789999999999999999999999988 9999
Q ss_pred EEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 989 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 989 iiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
|||||||.||..++.++++.+|++|+|||+++|++.||..+|+.+...++|+++|+||+|+..++++++++++++.+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGAN 165 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988998888765321
Q ss_pred ---------------------------------ccc----c---------------------------------------
Q psy1758 1069 ---------------------------------CAT----E--------------------------------------- 1072 (1527)
Q Consensus 1069 ---------------------------------~~~----~--------------------------------------- 1072 (1527)
+.. +
T Consensus 166 ~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~ 245 (704)
T 2rdo_7 166 PVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245 (704)
T ss_pred ceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Confidence 000 0
Q ss_pred ------------cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC--------------------CCCC
Q psy1758 1073 ------------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNN 1120 (1527)
Q Consensus 1073 ------------~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~ 1120 (1527)
...-+|++++||+++. |+++||++|++++|+|.. ++++
T Consensus 246 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (704)
T 2rdo_7 246 AEIKGALRQRVLNNEIILVTCGSAFKNK----------GVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDE 315 (704)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCc----------cHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCC
Confidence 0012699999999998 999999999999999854 2578
Q ss_pred CceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec
Q psy1758 1121 PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI 1200 (1527)
Q Consensus 1121 p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~ 1200 (1527)
||+++|||+++|++.|+++++||+||+|++||.|++.+. + ...+|++|+.++|.++.++++|.|||||+++|++++
T Consensus 316 p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~ 391 (704)
T 2rdo_7 316 PFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVK--A--ARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV 391 (704)
T ss_pred ceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCC--C--cEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccC
Confidence 999999999999999999999999999999999998765 2 457999999999999999999999999999999999
Q ss_pred ccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEec
Q psy1758 1201 CIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGR 1280 (1527)
Q Consensus 1201 ~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~ 1280 (1527)
.+|||||+.+.+.+++++++++|++++++.|.++. +.++|.++|.|+.++||+|++++++++++ ++++||
T Consensus 392 ~~GdTl~~~~~~~~l~~~~~~~Pv~~~ai~p~~~~---------d~~kl~~~L~~L~~eDp~l~v~~~~etge-~il~g~ 461 (704)
T 2rdo_7 392 TTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKA---------DQEKMGLALGRLAKEDPSFRVWTDEESNQ-TIIAGM 461 (704)
T ss_pred ccCCEEeCCCcccccCCCCCCCceEEEEEEECChH---------HHHHHHHHHHHHHhhCCEEEEEEcCCCCc-EEEEeC
Confidence 99999999988889999999999999999987652 36899999999999999999999999999 999999
Q ss_pred chhHHHHHHHHHHhc-CcEEEEecCeeeEEEe----c--------------------------------c----------
Q psy1758 1281 GELHLTILIENMRRE-GYELSVSRPRVIFKTL----N--------------------------------G---------- 1313 (1527)
Q Consensus 1281 GelhL~vl~e~lrre-g~ev~vs~P~V~yre~----~--------------------------------g---------- 1313 (1527)
|||||+|+++||||+ |+|+.+++|+|+|||+ . |
T Consensus 462 GelhLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g~~f~~~~~ 541 (704)
T 2rdo_7 462 GELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIK 541 (704)
T ss_pred CHHHHHHHHHHHHHHhCceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCCCcEEEEecc
Confidence 999999999999976 9999999999999993 1 1
Q ss_pred ---------------------------------------------------------------------eEeeeeEEEEE
Q psy1758 1314 ---------------------------------------------------------------------ELYEPYENLFV 1324 (1527)
Q Consensus 1314 ---------------------------------------------------------------------~llEP~~~~~i 1324 (1527)
.+||||+.++|
T Consensus 542 g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i 621 (704)
T 2rdo_7 542 GGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEV 621 (704)
T ss_pred CCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEE
Confidence 58999999999
Q ss_pred EecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1325 DIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1325 ~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
.||++|+|+||++|++|||++++|++.+ +++.|+|++|++|++||.++|+|+|+|+|+|+++|+||++++
T Consensus 622 ~~p~~~~G~v~~~l~~rrG~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 691 (704)
T 2rdo_7 622 ETPEENTGDVIGDLSRRRGMLKGQESEV-TGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAP 691 (704)
T ss_pred EeCHHHHhHHHHHHHhCCceEeCceecC-CeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECC
Confidence 9999999999999999999999999975 789999999999999999999999999999999999999998
No 9
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.3e-75 Score=752.48 Aligned_cols=453 Identities=26% Similarity=0.424 Sum_probs=392.3
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh 995 (1527)
+.++++||+|+||+|||||||+++|++.++.+.+.+.+. .+++|+.+.|+++|+|+.+....+.|++++++|||||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 456789999999999999999999998877776554443 368899999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh-------
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------- 1068 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l------- 1068 (1527)
.+|..++.++++.+|++|+|+|+++|++.|+..+|..+.+.++|+++|+||+|+..+++.++++++++.+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ip 165 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLP 165 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEE
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEee
Confidence 9999999999999999999999999999999999999999999999999999999988888888888765320
Q ss_pred ---------------------c-ccc-------------------------------c----------------------
Q psy1758 1069 ---------------------C-ATE-------------------------------E---------------------- 1073 (1527)
Q Consensus 1069 ---------------------~-~~~-------------------------------~---------------------- 1073 (1527)
. ... +
T Consensus 166 isa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~ 245 (693)
T 2xex_A 166 IGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIR 245 (693)
T ss_dssp ECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHH
Confidence 0 000 0
Q ss_pred -----ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC--------------------CCCCCceeEEEe
Q psy1758 1074 -----QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNNPLQLQIIS 1128 (1527)
Q Consensus 1074 -----~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~p~~~~V~~ 1128 (1527)
..-+|++++||++|. |+++||++|.+++|+|.. ++++||+++|||
T Consensus 246 ~~~~~~~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK 315 (693)
T 2xex_A 246 QATTNVEFYPVLCGTAFKNK----------GVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFK 315 (693)
T ss_dssp HHHHTTSCEEEEECBTTTTB----------SHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEE
T ss_pred HHHHhCCeeeEEEeecccCc----------CHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEE
Confidence 001689999999998 999999999999999954 367899999999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 1208 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~ 1208 (1527)
+++|++.|+++++||+||+|++||+|++... + ...+|++|+.++|.+++++++|.|||||+++|++++.+|||||+
T Consensus 316 ~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~ 391 (693)
T 2xex_A 316 VMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK--G--KRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCG 391 (693)
T ss_dssp EEEETTTEEEEEEEEEESEEETTEEEEETTT--T--EEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEE
T ss_pred eeecCCCceEEEEEEEeeeEecCCEEEecCC--C--ceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEec
Confidence 9999999999999999999999999998754 2 46799999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHH
Q psy1758 1209 PSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 1288 (1527)
Q Consensus 1209 ~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl 1288 (1527)
.+.+.++|++++++|++++++.|.++. +.++|.++|.++.++||+|++++++++++ ++++|||||||+|+
T Consensus 392 ~~~~~~~~~~~~~~Pv~~~av~p~~~~---------d~~kl~~~L~~l~~eDp~l~~~~~~et~e-~il~g~Gelhlei~ 461 (693)
T 2xex_A 392 EKNDIILESMEFPEPVIHLSVEPKSKA---------DQDKMTQALVKLQEEDPTFHAHTDEETGQ-VIIGGMGELHLDIL 461 (693)
T ss_dssp TTCCEECCCCSSCSCSEEEEEEESSHH---------HHHHHHHHHHHHHHHCTTCEEEC---CCC-EEEEESSHHHHHHH
T ss_pred CCCccccCCcCCCCceEEEEEEeCCch---------hHHHHHHHHHHHHhhCCeEEEEEcCCCCc-EEEEeCCHHHHHHH
Confidence 888888999999999999999987642 46899999999999999999999999999 99999999999999
Q ss_pred HHHHHhc-CcEEEEecCeeeEEEe-c------------------------------------------------------
Q psy1758 1289 IENMRRE-GYELSVSRPRVIFKTL-N------------------------------------------------------ 1312 (1527)
Q Consensus 1289 ~e~lrre-g~ev~vs~P~V~yre~-~------------------------------------------------------ 1312 (1527)
++||||+ |+|+.+++|+|+|||+ .
T Consensus 462 ~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v 541 (693)
T 2xex_A 462 VDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSV 541 (693)
T ss_dssp HHHHHHHSCCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTSSCGGGHHHH
T ss_pred HHHHHHHhCceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCcCCHHHHHHH
Confidence 9999976 9999999999999994 0
Q ss_pred --------------------------------------------------------ceEeeeeEEEEEEecCcchHHHHH
Q psy1758 1313 --------------------------------------------------------GELYEPYENLFVDIEEINQGIIMQ 1336 (1527)
Q Consensus 1313 --------------------------------------------------------g~llEP~~~~~i~vp~e~~G~v~~ 1336 (1527)
..+||||++++|.||++|+|+||+
T Consensus 542 ~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~ 621 (693)
T 2xex_A 542 EAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMG 621 (693)
T ss_dssp HHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHH
T ss_pred HHHHHHHHhcCCccCCceeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHH
Confidence 158999999999999999999999
Q ss_pred HHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1337 KLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1337 ~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+|++|||++++|++.+ ++++|+|++|++||+||.++|+|+|+|+|+|+++|+||++++
T Consensus 622 ~l~~rrG~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 679 (693)
T 2xex_A 622 DVTSRRGRVDGMEPRG-NAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVP 679 (693)
T ss_dssp HHHHTTCEEEEEEEET-TEEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECC
T ss_pred HHHhCCcEeecccccC-CeEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECC
Confidence 9999999999999975 789999999999999999999999999999999999999998
No 10
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=3.5e-75 Score=752.05 Aligned_cols=453 Identities=27% Similarity=0.422 Sum_probs=350.9
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh 995 (1527)
+.++++||+|+||+|||||||+++|++.++.+.+.+.+. .+++|+.+.|+++|+|+.+....+.|+++.++|||||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence 346789999999999999999999999888776655543 378999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh-------
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------- 1068 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l------- 1068 (1527)
.+|..++.++++.+|++|+|||+++|.+.||..+|..+.+.++|.++|+||+|+..++++++++++.+.+...
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~P 167 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLP 167 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEE
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceecc
Confidence 9999999999999999999999999999999999999999999999999999999988888888887765310
Q ss_pred -------------------------ccc----------------------------cc----------------------
Q psy1758 1069 -------------------------CAT----------------------------EE---------------------- 1073 (1527)
Q Consensus 1069 -------------------------~~~----------------------------~~---------------------- 1073 (1527)
+.. ++
T Consensus 168 i~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~ 247 (691)
T 1dar_A 168 IGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247 (691)
T ss_dssp ESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHH
Confidence 000 00
Q ss_pred -----ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC------------------CCCCCceeEEEeee
Q psy1758 1074 -----QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD------------------NSNNPLQLQIISLE 1130 (1527)
Q Consensus 1074 -----~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~------------------~~~~p~~~~V~~~~ 1130 (1527)
..-+|++++||++|. |+++||++|++++|+|.. ++++||+++|||+.
T Consensus 248 ~~~~~~~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~ 317 (691)
T 1dar_A 248 KGTIDLKITPVFLGSALKNK----------GVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIM 317 (691)
T ss_dssp HHHHTTSCEEEEECBGGGTB----------SHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEE
T ss_pred HHHHhCcEeEEEEeecccCc----------CHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEE
Confidence 001699999999998 999999999999999964 36789999999999
Q ss_pred ccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCC
Q psy1758 1131 YSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPS 1210 (1527)
Q Consensus 1131 ~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~ 1210 (1527)
+|++.|+++++||+||+|++||.|++.+. ....+|++|+.++|.++.++++|.|||||+++|++++.+|||||+.+
T Consensus 318 ~d~~~G~~~~~RV~sG~l~~g~~v~~~~~----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~ 393 (691)
T 1dar_A 318 ADPYVGRLTFIRVYSGTLTSGSYVYNTTK----GRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGED 393 (691)
T ss_dssp EETTTEEEEEEEEEESEEESSCEEEETTT----TEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETT
T ss_pred EcCCCCcEEEEEEeeeeEecCCEEEecCC----CcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCC
Confidence 99999999999999999999999998755 24579999999999999999999999999999999999999999988
Q ss_pred CC-CCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHH
Q psy1758 1211 KP-NGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILI 1289 (1527)
Q Consensus 1211 ~~-~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~ 1289 (1527)
.+ .+++++++++|++++++.|+++. +.++|.++|.|+.++||+|+|++++++++ ++++|||||||+|++
T Consensus 394 ~~~~~l~~~~~~~P~~~~ai~p~~~~---------d~~kl~~~L~~l~~eDp~l~v~~~~et~e-~i~~g~Gelhlei~~ 463 (691)
T 1dar_A 394 APRVILESIEVPEPVIDVAIEPKTKA---------DQEKLSQALARLAEEDPTFRVSTHPETGQ-TIISGMGELHLEIIV 463 (691)
T ss_dssp CCCCBCC-----------------------------------------CCCCSCEEEC-----C-EEEEESCCC------
T ss_pred CcccccCCCCCCCceEEEEEEECCch---------hHHHHHHHHHHHHhhCCeEEEEEcCCCCc-EEEEeCCHHHHHHHH
Confidence 88 88999999999999999987652 35789999999999999999999999999 999999999999999
Q ss_pred HHHHhc-CcEEEEecCeeeEEEe-c-------------------------------------------------------
Q psy1758 1290 ENMRRE-GYELSVSRPRVIFKTL-N------------------------------------------------------- 1312 (1527)
Q Consensus 1290 e~lrre-g~ev~vs~P~V~yre~-~------------------------------------------------------- 1312 (1527)
+||||+ |+|+.+++|+|+|||+ .
T Consensus 464 ~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~ 543 (691)
T 1dar_A 464 DRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQ 543 (691)
T ss_dssp ---CCCEEEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSCTTTHHHHH
T ss_pred HHHHHhhCceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCcHHHHHHHH
Confidence 999976 9999999999999994 0
Q ss_pred -------------------------------------------------------ceEeeeeEEEEEEecCcchHHHHHH
Q psy1758 1313 -------------------------------------------------------GELYEPYENLFVDIEEINQGIIMQK 1337 (1527)
Q Consensus 1313 -------------------------------------------------------g~llEP~~~~~i~vp~e~~G~v~~~ 1337 (1527)
..+||||++++|.||++|+|+||++
T Consensus 544 ~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~ 623 (691)
T 1dar_A 544 KGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGD 623 (691)
T ss_dssp HHHHHHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHH
T ss_pred HHHHHHHhcCCccCCceeeEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHH
Confidence 1589999999999999999999999
Q ss_pred HhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1338 LNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1338 l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|++|||++++|++.+ ++++|+|++|++||+||.++|+|+|+|+|+|+++|+||++++
T Consensus 624 l~~rrG~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 680 (691)
T 1dar_A 624 LNARRGQILGMEPRG-NAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVP 680 (691)
T ss_dssp HHHTTCCEEEEEEET-TEEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECC
T ss_pred HHHCCceeecceecC-CeEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECC
Confidence 999999999999975 799999999999999999999999999999999999999998
No 11
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=1.1e-71 Score=717.54 Aligned_cols=449 Identities=22% Similarity=0.369 Sum_probs=408.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccc--cceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI--NARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~--~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~ 996 (1527)
..+.++|+|+||+|||||||+++|++..+.+...+.+ ...++|..+.|+++|+|+.+....+.|+++.+||||||||.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 4567999999999999999999999887766555544 23678999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh--------
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL-------- 1068 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l-------- 1068 (1527)
+|..++.++++.+|++++|+|+++|+.+||+.+|+.+...++|+++|+||+|+. ++.+++.+++.+.+...
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~Pi~ 164 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDLPLY 164 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEEEEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcceEEeeec
Confidence 999999999999999999999999999999999999999999999999999999 88888888887765400
Q ss_pred ---------------------c---------------------------cccc---------------------------
Q psy1758 1069 ---------------------C---------------------------ATEE--------------------------- 1073 (1527)
Q Consensus 1069 ---------------------~---------------------------~~~~--------------------------- 1073 (1527)
+ ..++
T Consensus 165 ~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~ 244 (665)
T 2dy1_A 165 EGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRR 244 (665)
T ss_dssp ETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred CCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 0 0000
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC-CCCCceeEEEeeeccccCceEEEEEeecCccccCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN-SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQ 1152 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~-~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd 1152 (1527)
..-+|++++||++|. |+++||++|.+++|+|... .++||+++||++.+|++.|+++++||+||+|++||
T Consensus 245 ~~~~pv~~~SA~~~~----------Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~ 314 (665)
T 2dy1_A 245 GLLYPVALASGEREI----------GVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGD 314 (665)
T ss_dssp TSCEEEEECBTTTTB----------SHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTE
T ss_pred CCeeEEEEeecccCc----------CHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCC
Confidence 011699999999998 9999999999999999754 68899999999999999999999999999999999
Q ss_pred EEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCC--CCCCCCccCCCceeEEEE
Q psy1758 1153 DVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKP--NGLPMLNIDEPTLTINFM 1230 (1527)
Q Consensus 1153 ~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~--~~l~~~~~~~P~l~~~~~ 1230 (1527)
.|++.+ ...+|++|+.++|.++.++++|.|||||+++|++++.+|||||+.+.+ .++|++++++|++++++.
T Consensus 315 ~v~~~~------~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~~~~~i~ 388 (665)
T 2dy1_A 315 SLQSEA------GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALH 388 (665)
T ss_dssp EEBCTT------SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCCCCCCEEEEEE
T ss_pred EEEcCC------CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCCCCCceEEEEEE
Confidence 998643 357999999999999999999999999999999999999999998887 789999999999999999
Q ss_pred ecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEE
Q psy1758 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKT 1310 (1527)
Q Consensus 1231 ~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre 1310 (1527)
|+++ -+.++|.++|.|+.++||+|+|++++++++ ++++|||||||+|+++|||++|+|+.+++|+|+|||
T Consensus 389 p~~~---------~d~~kl~~~L~~l~~edp~l~v~~~~et~e-~i~~g~Gelhlei~~~rl~~~~v~v~~~~p~V~yrE 458 (665)
T 2dy1_A 389 PKGR---------TDEARLGEALRKLLEEDPSLKLERQEETGE-LLLWGHGELHLATAKERLQDYGVEVEFSVPKVPYRE 458 (665)
T ss_dssp ESSH---------HHHHHHHHHHHHHHHHCTTSEEEECTTTCC-EEEEESSHHHHHHHHHHHHHTTCCEEEECCCCCCEE
T ss_pred ECCh---------hhHHHHHHHHHHHHHhCCeEEEEEcCCCCC-EEEEecCHHHHHHHHHHHHHCCceEEEeCCEEEEEE
Confidence 8763 146899999999999999999999999999 999999999999999999977999999999999999
Q ss_pred e-c-----------------------------------------------------------------------------
Q psy1758 1311 L-N----------------------------------------------------------------------------- 1312 (1527)
Q Consensus 1311 ~-~----------------------------------------------------------------------------- 1312 (1527)
+ .
T Consensus 459 ti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~ 538 (665)
T 2dy1_A 459 TIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPASEYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVY 538 (665)
T ss_dssp EESSCEEEEEEEEEEETTEEEEEEEEEEEEECSSCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEE
T ss_pred eeccceeeeeecccccCCCcceEEEEEEEEECCCCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEE
Confidence 4 0
Q ss_pred -c-----------------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEe
Q psy1758 1313 -G-----------------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRI 1362 (1527)
Q Consensus 1313 -g-----------------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~v 1362 (1527)
| .+||||++++|.||++|+|+||++|++|||++++|++.+ ++++|+|++
T Consensus 539 dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~a~~ 617 (665)
T 2dy1_A 539 NGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG-ALSVVHAEV 617 (665)
T ss_dssp EEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET-TEEEEEEEE
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC-CeEEEEEEE
Confidence 0 489999999999999999999999999999999999975 799999999
Q ss_pred chhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1363 PSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1363 P~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|++|++||.++|+|+|+|+|+|+++|+||+|++
T Consensus 618 P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 650 (665)
T 2dy1_A 618 PLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVP 650 (665)
T ss_dssp EGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECC
T ss_pred CHHHHhhHHHHhHhhcCCcEEEEEEeCceeECC
Confidence 999999999999999999999999999999998
No 12
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=1.8e-69 Score=711.79 Aligned_cols=466 Identities=27% Similarity=0.396 Sum_probs=383.9
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---------------
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--------------- 983 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--------------- 983 (1527)
.+++|||+|+||+|||||||+++|++.++.+.+......+++|+.+.|++||+|+.+....+.|+
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 45789999999999999999999999988776655444578999999999999999999998886
Q ss_pred -CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCC----CChh---
Q psy1758 984 -GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN----ARPE--- 1055 (1527)
Q Consensus 984 -~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~----a~~~--- 1055 (1527)
++.+||||||||.||..++.++++.+|++|+|||+++|++.||..+|..+...++|+++|+||+|+.. .+++
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~ 175 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLY 175 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999863 2333
Q ss_pred ----hhHHHHHHHHhhhcc---c---ccccCCcEEEeccccCCcCC--------------------------C---c---
Q psy1758 1056 ----WVVDATFDLFDKLCA---T---EEQLDFPVIYTSALHGYANE--------------------------N---S--- 1093 (1527)
Q Consensus 1056 ----~v~~~~~~~~~~l~~---~---~~~~~~pvi~~SA~~g~~~~--------------------------~---~--- 1093 (1527)
..++++...+..... . ..+...++.++||++||+.. . .
T Consensus 176 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~ 255 (842)
T 1n0u_A 176 QTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTK 255 (842)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTT
T ss_pred HHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCC
Confidence 334444444322111 0 11223468889998886410 0 0
Q ss_pred -------cc-c-----------------------------------cCC--------------------------ChhHH
Q psy1758 1094 -------KA-R-----------------------------------QGN--------------------------MIPLF 1104 (1527)
Q Consensus 1094 -------~~-~-----------------------------------~~g--------------------------i~~Ll 1104 (1527)
.. . ..| +++||
T Consensus 256 ~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LL 335 (842)
T 1n0u_A 256 KWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALL 335 (842)
T ss_dssp EEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHH
T ss_pred eEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHH
Confidence 00 0 011 27899
Q ss_pred HHHHhhcCCCC-------------------------CCCCCCceeEEEeeeccccCce-EEEEEeecCccccCCEEEEec
Q psy1758 1105 EAILKYVPVHK-------------------------DNSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMN 1158 (1527)
Q Consensus 1105 ~~i~~~lp~p~-------------------------~~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~Gd~v~~~~ 1158 (1527)
++|++++|+|. +++++||+++|||+.++++.|+ ++|+||+||+|++||.|++++
T Consensus 336 d~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~ 415 (842)
T 1n0u_A 336 EMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQG 415 (842)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEEC
T ss_pred HHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecc
Confidence 99999999995 3678999999999999999996 999999999999999998875
Q ss_pred CC--CCCcC---cceeeeEEEeecCceeEeeeeecCCEEEEecceecccC-CeeeCCCCCCCCCCCccC-CCceeEEEEe
Q psy1758 1159 GP--DDKPN---KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIG-STICDPSKPNGLPMLNID-EPTLTINFMV 1231 (1527)
Q Consensus 1159 ~~--~g~~~---~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iG-dTi~~~~~~~~l~~~~~~-~P~l~~~~~~ 1231 (1527)
.+ .++.. .+||++|+.++|.+++++++|.|||||+|+|++++.+| +|||+.+.+.+++++.++ +|++++++.|
T Consensus 416 ~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~~~~~~Pv~~~avep 495 (842)
T 1n0u_A 416 PNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEV 495 (842)
T ss_dssp TTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCCCCCCSCCEEEEEEE
T ss_pred ccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccccCCCCCCceEEEEEEE
Confidence 42 12223 47999999999999999999999999999999998775 799998888889988888 5999999998
Q ss_pred cCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc--CcEEEEecCeeeEE
Q psy1758 1232 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE--GYELSVSRPRVIFK 1309 (1527)
Q Consensus 1232 ~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre--g~ev~vs~P~V~yr 1309 (1527)
.+. .+.+||.++|.++.++||+|+|+++ ++++ ++++|||||||+|+++||||+ |+|+.+++|+|+||
T Consensus 496 ~~~---------~d~~kl~~~L~kL~~eDp~l~v~~~-etge-~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yr 564 (842)
T 1n0u_A 496 KNA---------NDLPKLVEGLKRLSKSDPCVLTYMS-ESGE-HIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYR 564 (842)
T ss_dssp SSG---------GGHHHHHHHHHHHHHHCTTCEEEEC-TTSC-EEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCE
T ss_pred CCH---------HHHHHHHHHHHHHHHhCCcEEEEEc-CCCC-EEEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEE
Confidence 653 2568999999999999999999998 7899 999999999999999999865 99999999999999
Q ss_pred Ee------c-----------------------------------------------------------------------
Q psy1758 1310 TL------N----------------------------------------------------------------------- 1312 (1527)
Q Consensus 1310 e~------~----------------------------------------------------------------------- 1312 (1527)
|+ .
T Consensus 565 ETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~ 644 (842)
T 1n0u_A 565 ETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPN 644 (842)
T ss_dssp EEESSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSE
T ss_pred EeeccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCc
Confidence 94 0
Q ss_pred -------c----------------------------------------------------------------------eE
Q psy1758 1313 -------G----------------------------------------------------------------------EL 1315 (1527)
Q Consensus 1313 -------g----------------------------------------------------------------------~l 1315 (1527)
| .|
T Consensus 645 ~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~L 724 (842)
T 1n0u_A 645 LVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKI 724 (842)
T ss_dssp EEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred EEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeE
Confidence 1 48
Q ss_pred eeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCC-cEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeec
Q psy1758 1316 YEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEK-ERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF 1394 (1527)
Q Consensus 1316 lEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~-~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~ 1394 (1527)
|||||.++|.||++|+|+||++|++|||++++|++.++ ++..|++++|++|++||.++|+|+|+|+|+|+++|+||+++
T Consensus 725 LEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~v 804 (842)
T 1n0u_A 725 QEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTL 804 (842)
T ss_dssp EEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEEC
T ss_pred EeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeC
Confidence 99999999999999999999999999999999998643 57999999999999999999999999999999999999999
Q ss_pred c
Q psy1758 1395 Y 1395 (1527)
Q Consensus 1395 ~ 1395 (1527)
+
T Consensus 805 p 805 (842)
T 1n0u_A 805 G 805 (842)
T ss_dssp C
T ss_pred C
Confidence 8
No 13
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=1.9e-70 Score=692.44 Aligned_cols=454 Identities=32% Similarity=0.489 Sum_probs=375.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC------------------CeEEEEEeCCChhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN------------------HGSITFLDTPGHEA 128 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~------------------~~~i~~iDTPG~e~ 128 (1527)
.|+++|+++||+|||||||+++|++..+...+.+++|++++...+.+. ...++|||||||++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 478999999999999999999999877665555688888776666542 11599999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc-h--------------hHH------
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI-N--------------LDR------ 187 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~-~--------------~~~------ 187 (1527)
|..++.++++.+|++|+|+|+++|+++|+.+.|..+...++|+++|+||+|+... . ...
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~ 162 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999642 1 011
Q ss_pred -----HHHHHhhhccccc------ccCCCCcEEEeeccCCCChhHHHHHHHHHHHH-H--hhcCCCCCCCceEEEEEeec
Q psy1758 188 -----IKQDLISEQVIPE------EYGGASPFISISAKTGVGINKLLENISLQAEI-L--ELKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 188 -----~~~~l~~~~~~~~------~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~-~--~~~~~~~~p~~~~v~~~~~~ 253 (1527)
....+.+.....+ .++..+|++++||++|.|+++|+++|...... . .+..+++.|+.+.|++++.+
T Consensus 163 e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d 242 (594)
T 1g7s_A 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242 (594)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccCCCceeEEEEEEEe
Confidence 1112222222111 22455799999999999999999999865532 2 23445678999999999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEecceee----eEeEeecc-----------CCceeeecCCCcce--EecCCCCCCCCC
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGASYG----RIRSMLNE-----------NGKNILEAGPSIPV--EIQGLTKVPFSG 316 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~~~~----kVr~i~~~-----------~g~~v~~a~~~~~v--~I~gl~~~~~~G 316 (1527)
++.|++++++|++|+|++||.|++++..+ +|++|+.. ++.++++|.|+.++ .+.||+.+ .+|
T Consensus 243 ~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~-~~G 321 (594)
T 1g7s_A 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV-MAG 321 (594)
T ss_dssp TTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB-CTT
T ss_pred CCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC-CCC
Confidence 99999999999999999999999987655 99999764 34567888855444 45567776 899
Q ss_pred CeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceee
Q psy1758 317 EELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKI 396 (1527)
Q Consensus 317 ~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i 396 (1527)
|.|.++.+++++++... ..++++ .-..+.+++|||||++||+|||.++|.++ ++
T Consensus 322 d~l~~~~~~~~~~~~~~----------------~~~~~~-----~~~~~~~~~~vkad~~gs~eal~~~l~~~-----~~ 375 (594)
T 1g7s_A 322 SPLRVVTDPEKVREEIL----------------SEIEDI-----KIDTDEAGVVVKADTLGSLEAVVKILRDM-----YV 375 (594)
T ss_dssp CEEEECSSHHHHHHHHH----------------HHHHTT-----SCBCSSSCCEEEESSHHHHHHHHHHHHHT-----TC
T ss_pred CEEEecCCHHHHHHHHH----------------HHHHhc-----ccccccccEEEEeCCCCCHHHHHHHHHhC-----CC
Confidence 99999998844432110 011111 11246789999999999999999999998 79
Q ss_pred eEEeeccCcCChhhHHHHHhc------CCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceee
Q psy1758 397 QVIHNAVGNINESDINLAIAS------KAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKE 470 (1527)
Q Consensus 397 ~iv~~~vG~it~~Dv~~A~~~------~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e 470 (1527)
+|++++||+||++||.+|+++ +|+||||||+++++++++|++.||+|++|||||+|+|+++++|+++++|++++
T Consensus 376 ~v~~~~vg~i~~~dv~~a~~~~~~~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~ 455 (594)
T 1g7s_A 376 PIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKK 455 (594)
T ss_dssp CCSEEEESSBCHHHHHHHHHHHTTCTTSCEEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEecccCCCCHHHHHHHHhhhccCcCCCEEEEeCCcCCHHHHHHHHHcCCeEEECCHHHHHHHHHHHHhhhccchhhhh
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999998644
Q ss_pred ---eeeEeEEEe----EEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccc
Q psy1758 471 ---NLLGLAEIR----QVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLS 543 (1527)
Q Consensus 471 ---~~~g~a~v~----~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~ 543 (1527)
.++|+|+++ ++|+.++ ++||||+|++|++++|+++|+ |+|. |.|+|.||||+|+||+||++|+|||+.+
T Consensus 456 ~~~~~~~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~~~k~~v~~~~~g~e~gi~~ 531 (594)
T 1g7s_A 456 WMEAIIKPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQDKGENLKSASRGQKVAMAI 531 (594)
T ss_dssp HHTTSCCCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEEETTEEESEEETTCCEEEEE
T ss_pred hhheeeeeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehhcccCccccccCCCCEEEEEE
Confidence 577777776 8999888 899999999999999999999 9995 9999999999999999999999999999
Q ss_pred hhh---hhhhh
Q psy1758 544 RIE---NQIQR 551 (1527)
Q Consensus 544 r~~---~~i~~ 551 (1527)
+.+ ++|+.
T Consensus 532 ~~~~~~~~~~~ 542 (594)
T 1g7s_A 532 KDAVYGKTIHE 542 (594)
T ss_dssp ETCCBTTTBCT
T ss_pred eCcccCCCCCC
Confidence 885 56654
No 14
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=100.00 E-value=6.1e-71 Score=629.72 Aligned_cols=263 Identities=44% Similarity=0.744 Sum_probs=243.7
Q ss_pred ccccccccccceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEE
Q psy1758 651 MQFHIKKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAI 730 (1527)
Q Consensus 651 ~~~~~~~~~~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~ 730 (1527)
..-++++.|+.+||||+||||+|||||+|++++|++|+.+|+||+|||||+||||||+|+|+|||+++||+..+|+|+++
T Consensus 13 ~~~~~~~~~~~~~Gil~vdKP~G~TS~dvv~~vr~~l~~kKvGH~GTLDP~AtGvL~i~~G~aTKl~~~l~~~~K~Y~a~ 92 (327)
T 1k8w_A 13 SSGHIEGRHMDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVI 92 (327)
T ss_dssp ---------CCCCEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGTHHHHTSCEEEEEE
T ss_pred cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHhhccceeccCCCCCCCCeeEEEEEECHHHhHHHHhccCCcEEEEE
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEE
Q psy1758 731 IHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKI 810 (1527)
Q Consensus 731 ~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~ 810 (1527)
++||.+|||+|.+|+|++++++ +++.++|+++|++|+|+|+|+||+|||+|+||||||+|||+|++||+++|+++||+|
T Consensus 93 ~~lG~~TdT~D~eG~v~~~~~~-~~t~e~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i 171 (327)
T 1k8w_A 93 ARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYEL 171 (327)
T ss_dssp EEETEEESSSBTTSCEEEECCC-CCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEE
T ss_pred EEECCcccCCCCCCCEEeecCC-CCCHHHHHHHHHhccceEEEeCChhheeccCCccHHHHHhCCCcccccceEEEEEEE
Confidence 9999999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhh---------hhhc-
Q psy1758 811 TIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSE---------YERI- 880 (1527)
Q Consensus 811 ~~~~~~~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~---------~~~~- 880 (1527)
++++|+.|.++|+|+||+||||||||+|||.+|||+|||++||||++|+|++++|++++++.+... ...+
T Consensus 172 ~ll~~~~~~~~~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~F~~~~a~~l~~l~~~~~~~~~~~~~~~~~l~ 251 (327)
T 1k8w_A 172 LFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 251 (327)
T ss_dssp EEEEEETTEEEEEEEECTTCCHHHHHHHHHHHHTSCEEEEEEEEEEETTCCGGGCEEHHHHHHHHHHHHHTTSCTHHHHG
T ss_pred EEEEeeCCEEEEEEEEcCCchHHHHHHHHHHHhCCCeEEEEEEEEEEcCCccccccCHHHHHHHHHhhhcccccchhHHh
Confidence 999999999999999999999999999999999999999999999999999999999999965322 1122
Q ss_pred cccCcccccccccceeeecccccceeccCccccc
Q psy1758 881 SSLIPIDILLSSFGIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 881 ~~L~pie~~L~~lP~i~l~d~~~~~i~nG~~i~l 914 (1527)
..|+|++.++.++|.+.++++....+.||+.+..
T Consensus 252 ~~l~p~~~~l~~lp~v~l~~~~~~~l~~G~~l~~ 285 (327)
T 1k8w_A 252 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT 285 (327)
T ss_dssp GGCBCTTGGGTTSCEEEECHHHHHHHTTTCCBCC
T ss_pred hhccCHHHHHccCCEEEeCHHHHHHHhCcCccCC
Confidence 3589999999999999999999999999998865
No 15
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=100.00 E-value=1.3e-70 Score=622.59 Aligned_cols=251 Identities=34% Similarity=0.532 Sum_probs=240.6
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
++||||+||||+|||||+|++|+|++|+.+|+||+|||||+||||||||+|+|||+++||+..+|+|+++++||.+|||+
T Consensus 1 ~~~Gil~vdKP~G~TS~~vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~ 80 (309)
T 1r3e_A 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETF 80 (309)
T ss_dssp CCCEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTSCEEEEEEEEETEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccceecccccCCCCcceeEEEEECHHHhHHHHhCccCcEEEEEEEECCcccCC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeE
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 820 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~ 820 (1527)
|.+|+|++++++. ++.++|+++|++|+|+|+|+||+|||+|+||||||+|||+|++||+++|+++||++++++|+.|.+
T Consensus 81 D~eG~v~~~~~~~-~t~~~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~p~~ 159 (309)
T 1r3e_A 81 DITGEVVEERECN-VTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDV 159 (309)
T ss_dssp BTTSCEEEECCCC-CCHHHHHHHHHSSSEEEEECCCSSSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEETTEE
T ss_pred CCCCCEEEEecCC-CCHHHHHHHHHhccceEEEeCChHHhcccCCccHHHHHhCCCcccccceEEEEEEEEEEEeeCCEE
Confidence 9999999999886 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeecc
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSD 900 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d 900 (1527)
+|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+. .....|+|++.++.++|.+.+++
T Consensus 160 ~~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~---~l~~~l~p~~~~l~~~p~v~l~~ 236 (309)
T 1r3e_A 160 SFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFEAAPE---EIENRIIPLEKCLEWLPRVVVHQ 236 (309)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBCTTTSCHH---HHHHHCEEGGGSSTTSCEEECCT
T ss_pred EEEEEECCCchHHHHHHHHHHHhCCCEEEEEEEEEEEcCCcHHHccCHHHHhhc---hhhccccCHHHHhcCCCeEEeCH
Confidence 999999999999999999999999999999999999999999999999998543 11235899999999999999999
Q ss_pred cccceeccCcccccc
Q psy1758 901 LLSKRFLHGQNLFLS 915 (1527)
Q Consensus 901 ~~~~~i~nG~~i~ls 915 (1527)
+....+.||+.+...
T Consensus 237 ~~~~~~~~G~~l~~~ 251 (309)
T 1r3e_A 237 ESTKMILNGSQIHLE 251 (309)
T ss_dssp TTHHHHTTTCCEESS
T ss_pred HHHHHHHCcCcccCC
Confidence 999999999988653
No 16
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=2.6e-70 Score=620.61 Aligned_cols=248 Identities=31% Similarity=0.529 Sum_probs=210.3
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
.+|||+||||+||||||||+|+|++|+.+|+||+|||||+||||||||+|+|||+++||+..+|+|+++++||.+|||+|
T Consensus 5 ~~Gil~vdKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~~~~~lG~~TdT~D 84 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTED 84 (316)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTTSCEEEEEEEEETEEETTSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccccccccCCCCCeEEEEEEECHHHhHHHHhCcCCcEEEEEEEECCccCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEe----C
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT----I 817 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~----~ 817 (1527)
.+|+|++++++.+++.++|+++|++|+|+|+|+||+|||+|+||||||+|||+|++||+++|+|+||++++++|+ .
T Consensus 85 ~eG~v~~~~~~~~~t~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkrlYelAR~G~~ve~~~R~v~I~~i~ll~~~~~~~~ 164 (316)
T 1sgv_A 85 AEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQL 164 (316)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEEEEEEEETTE
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHhccccEEEeCCHHHhcccCChhHHHHHhCCCcccccceEEEEEEEEEEEeeccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 3
Q ss_pred CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcc-ccccccccee
Q psy1758 818 PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPI-DILLSSFGII 896 (1527)
Q Consensus 818 ~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pi-e~~L~~lP~i 896 (1527)
|.++|+|+|||||||||||||||.+|||+|||++||||++|+|++++|++++++.+.. ..|+|+ +.++.++|.+
T Consensus 165 p~~~~~v~CskGTYIRsLa~DiG~~Lg~~a~~~~LrRt~~G~F~~~~a~tl~~l~~~~-----~~llpi~~~~l~~~p~v 239 (316)
T 1sgv_A 165 IDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERP-----ALSLSLDEACLLMFARR 239 (316)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHHTSCEEEEEEEEEEETTEEGGGCBCHHHHHHSC-----CCSEEHHHHHHHHSEEE
T ss_pred ceEEEEEEECCCCcHHHHHHHHHHHhCCCEEEeeEEEEEEccCcHHHccCHHHHhhch-----hccCCHHHHHHccCCeE
Confidence 7999999999999999999999999999999999999999999999999999996531 257888 6778899999
Q ss_pred eecccccceeccCccccc
Q psy1758 897 YLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 897 ~l~d~~~~~i~nG~~i~l 914 (1527)
.++++....+.||+.+..
T Consensus 240 ~l~~~~~~~l~~G~~l~~ 257 (316)
T 1sgv_A 240 DLTAAEASAAANGRSLPA 257 (316)
T ss_dssp ECCHHHHHHHHTTCCCBC
T ss_pred EeCHHHHHHHHCcCcccC
Confidence 999999999999998864
No 17
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=4.4e-69 Score=676.45 Aligned_cols=369 Identities=22% Similarity=0.341 Sum_probs=316.3
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc------ceecchhhhhcccceeEeeeeEEEEecCeEEEEEe
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIID 991 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiD 991 (1527)
...++|||||+||+|||||||+++||+.+|.+.+.+.++ .++||++++|++|||||.++..++.|++++|||||
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlID 106 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLD 106 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEEC
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEe
Confidence 356899999999999999999999999999998877765 36899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc-
Q psy1758 992 TPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA- 1070 (1527)
Q Consensus 992 TPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~- 1070 (1527)
||||.||.+|++++|+++|+||+||||.+|+++||+.+|++|.++++|+|+||||||+++++++++++++++.|.....
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p 186 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAP 186 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEE
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988731000
Q ss_pred ------------------------------------------cc----------------------------------cc
Q psy1758 1071 ------------------------------------------TE----------------------------------EQ 1074 (1527)
Q Consensus 1071 ------------------------------------------~~----------------------------------~~ 1074 (1527)
.+ ..
T Consensus 187 ~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g 266 (548)
T 3vqt_A 187 MTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKG 266 (548)
T ss_dssp SEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTT
T ss_pred EEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhC
Confidence 00 00
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC---------CCCCCceeEEEeeecc---ccCceEEEEE
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD---------NSNNPLQLQIISLEYS---SYLGKIGIGR 1142 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~---------~~~~p~~~~V~~~~~d---~~~G~v~~gr 1142 (1527)
.-+|++++||+++. |+++||+++++++|+|.. +.+.||.++||++.++ +|.|+++|+|
T Consensus 267 ~~~PV~~gSA~~~~----------Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~R 336 (548)
T 3vqt_A 267 ELTPVFFGSAINNF----------GVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLR 336 (548)
T ss_dssp SEEEEEECBGGGTB----------SHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEE
T ss_pred CcceeeecccccCc----------CHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEE
Confidence 12699999999998 999999999999999964 3467999999999887 8999999999
Q ss_pred eecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCC
Q psy1758 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 1222 (1527)
Q Consensus 1143 V~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~ 1222 (1527)
|+||+|++||.|++... ..++||++++.++|.+++++++|.|||||+|+|++++.+|||||+.+.+.+++++++++
T Consensus 337 V~sG~l~~g~~v~~~~~----~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~~~i~~~~ 412 (548)
T 3vqt_A 337 ICSGTFTRGMRLKHHRT----GKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFA 412 (548)
T ss_dssp EEESCEETTCEEEETTT----TEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCBCCCEEEC
T ss_pred EecceecCCCEEEeecc----ccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccccCCCCCCC
Confidence 99999999999999765 35689999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEE-
Q psy1758 1223 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELS- 1300 (1527)
Q Consensus 1223 P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~- 1300 (1527)
|++++++.|.++ .+..+|.++|.++.++|| +++.+++++++ ++|+|||||||+|++|||||| |+|+.
T Consensus 413 P~~~~av~p~~~---------~d~~kl~~~L~~L~eed~-~~v~~~~et~e-~il~g~GeLHLeI~~erL~~ey~vev~~ 481 (548)
T 3vqt_A 413 PEHFRRVRLKNP---------LKAKQLQKGLEQLAEEGA-VQLFRPLVNND-YILGAVGVLQFDVIVARLADEYGVDAVY 481 (548)
T ss_dssp CSEEEEEEESCG---------GGHHHHHHHHHHHHHTTS-SEEEEESSSCC-CEEEESSTHHHHHHHHHHHHHHCCCEEE
T ss_pred CcceeeeeeCCc---------hhHHHHHHHHHHhhhcCc-eeEEEECCCCc-EEEEEECHHHHHHHHHHHHHHhCCCEEE
Confidence 999999998764 145799999999998887 67888889999 999999999999999999876 99876
Q ss_pred ----EecCeeeEEEe
Q psy1758 1301 ----VSRPRVIFKTL 1311 (1527)
Q Consensus 1301 ----vs~P~V~yre~ 1311 (1527)
++.|+|+|||+
T Consensus 482 e~v~~~~P~V~YrEt 496 (548)
T 3vqt_A 482 EGVSTHTARWVYCED 496 (548)
T ss_dssp EECSCCEEEEEECSC
T ss_pred eeccccCceEEecCC
Confidence 57899999996
No 18
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=5.9e-56 Score=555.14 Aligned_cols=367 Identities=21% Similarity=0.288 Sum_probs=299.6
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc------ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDT 992 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDT 992 (1527)
..+++||+|+||+|||||||+++|++.++.+...+.+. .+++|+.+.|+++|+|+.+....+.|+++.++||||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 35679999999999999999999999877775544432 457899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh----
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL---- 1068 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l---- 1068 (1527)
|||.+|..++.++++.+|++|+|+|+++|+++||+.+|..+...++|+++|+||+|+..++..++++++.+.+...
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~ 169 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPI 169 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEES
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999999999999999999999999999888877778777654210
Q ss_pred ----------------------------cc-----------c--------c---------------------------cc
Q psy1758 1069 ----------------------------CA-----------T--------E---------------------------EQ 1074 (1527)
Q Consensus 1069 ----------------------------~~-----------~--------~---------------------------~~ 1074 (1527)
+. . . ..
T Consensus 170 ~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 249 (529)
T 2h5e_A 170 TWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAG 249 (529)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTT
T ss_pred ecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhC
Confidence 00 0 0 00
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC---------CCCCceeEEEeeec---cccCceEEEEE
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLEY---SSYLGKIGIGR 1142 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~---------~~~p~~~~V~~~~~---d~~~G~v~~gr 1142 (1527)
.-+|++++||++|. |+++||++|.+++|+|... .++||.++|||+.+ +++.|++++||
T Consensus 250 ~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~R 319 (529)
T 2h5e_A 250 EITPVFFGTALGNF----------GVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMR 319 (529)
T ss_dssp SEEEEEECBTTTTB----------SHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEE
T ss_pred ceeEEEeeecccCC----------CHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEE
Confidence 12589999999998 9999999999999999642 15799999999987 46899999999
Q ss_pred eecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCC
Q psy1758 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 1222 (1527)
Q Consensus 1143 V~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~ 1222 (1527)
|+||+|++||.|++.+. | ...||++++.++|.++.++++|.|||||++.|++++.+|||||+.+ +..+++++.++
T Consensus 320 V~sG~l~~g~~v~~~~~--~--~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~~~~~~~~ 394 (529)
T 2h5e_A 320 VVSGKYEKGMKLRQVRT--A--KDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKFTGIPNFA 394 (529)
T ss_dssp EEESCEETTCEEEETTT--T--EEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCBCCCEEEC
T ss_pred EecCeEcCCCEEEEeeC--C--CEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-ccccCCCCCCC
Confidence 99999999999999876 3 4689999999999999999999999999999999999999999977 56788889999
Q ss_pred CceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEE
Q psy1758 1223 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSV 1301 (1527)
Q Consensus 1223 P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~v 1301 (1527)
|++++++.+.+. . +.++|.++|.++.++|| +++.+++++++ ++|+|||||||+|+++||+|| |+++.+
T Consensus 395 P~~~~~v~~~~~---~------d~~kl~~~L~~L~~ed~-~~~~~~~~t~~-~il~~~Gelhlev~~~rl~~ey~v~v~~ 463 (529)
T 2h5e_A 395 PELFRRIRLKDP---L------KQKQLLKGLVQLSEEGA-VQVFRPISNND-LIVGAVGVLQFDVVVARLKSEYNVEAVY 463 (529)
T ss_dssp CSEEEEEEESCC------------CTHHHHHHHHHHTTS-CEEEEETTSCC-EEEEESSTHHHHHHHHHHHHHSSCCEEE
T ss_pred ccEEEEEEECCh---H------HHHHHHHHHHHHHhhCC-EEEEEeCCCCc-EEEEEECHHHHHHHHHHHHHHhCcEEEE
Confidence 999999997553 1 24689999999999997 99999999999 999999999999999999875 999999
Q ss_pred ecCeeeEEEe
Q psy1758 1302 SRPRVIFKTL 1311 (1527)
Q Consensus 1302 s~P~V~yre~ 1311 (1527)
++|+|+|||+
T Consensus 464 ~~~~v~y~et 473 (529)
T 2h5e_A 464 ESVNVATARW 473 (529)
T ss_dssp ECCCCSEEEE
T ss_pred ecCceeEEEE
Confidence 9999999994
No 19
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=7.4e-56 Score=553.51 Aligned_cols=406 Identities=22% Similarity=0.284 Sum_probs=342.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc------ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDT 992 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDT 992 (1527)
..++|||+|+||+|||||||+++|++.++.+.+.+.+. ..++|+.+.|+++|+|+.++...+.|+++.++||||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 45789999999999999999999999988887665543 357899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc-
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT- 1071 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~- 1071 (1527)
|||.+|..++.++++.+|++|+|+|+++|+..|+..+|..+...++|+++|+||+|++.+++.+.++++.+.+......
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~ 169 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPV 169 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEES
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceee
Confidence 9999999999999999999999999999999999999999999999999999999999888888888887765320000
Q ss_pred ----------------------------------------------------------------------------cccc
Q psy1758 1072 ----------------------------------------------------------------------------EEQL 1075 (1527)
Q Consensus 1072 ----------------------------------------------------------------------------~~~~ 1075 (1527)
....
T Consensus 170 ~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 249 (528)
T 3tr5_A 170 TWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGE 249 (528)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTS
T ss_pred ecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCc
Confidence 0001
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC---------CCCCceeEEEeeec--cc-cCceEEEEEe
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLEY--SS-YLGKIGIGRI 1143 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~---------~~~p~~~~V~~~~~--d~-~~G~v~~grV 1143 (1527)
-+|++++||++|. |+++||+++.+++|+|... .++||.++|||+.+ |+ |+|+++++||
T Consensus 250 ~~PV~~gSA~~~~----------GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV 319 (528)
T 3tr5_A 250 LTPIFFGSAINNF----------GVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRI 319 (528)
T ss_dssp EEEEEECBGGGTB----------SHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEE
T ss_pred eeEEEeccccCCc----------cHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEE
Confidence 1499999999999 9999999999999999643 25899999999874 88 9999999999
Q ss_pred ecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCC
Q psy1758 1144 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEP 1223 (1527)
Q Consensus 1144 ~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P 1223 (1527)
+||+|++||.|++.+. | ...||++++.++|.++.++++|.|||||+++|++++++|||||+. .+..+++++.++|
T Consensus 320 ~sG~l~~g~~v~~~~~--~--~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~-~~~~~~~~~~~~P 394 (528)
T 3tr5_A 320 ASGQYQKGMKAYHVRL--K--KEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQG-ERFKFTGIPNFAS 394 (528)
T ss_dssp EESCEETTEEEEETTT--T--EEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESS-CCCCBCCCEEECC
T ss_pred ecCeEcCCCEEEecCC--C--ceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCC-CCcccCCCCCCCC
Confidence 9999999999999866 3 468999999999999999999999999999999999999999984 4556777888889
Q ss_pred ceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEe
Q psy1758 1224 TLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVS 1302 (1527)
Q Consensus 1224 ~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs 1302 (1527)
.+.+++.+.+. .+..+|.++|.++.+|||+ ++.+++++++ ++|+|||+|||+|+++||+|| |+++.++
T Consensus 395 ~~~~~i~~~~~---------~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~-~il~~~G~lhlev~~~rL~~ey~v~v~~~ 463 (528)
T 3tr5_A 395 ELFRLVRLKDP---------LKQKALLKGLTQLSEEGAT-QLFRPLDSNE-LILGAVGLLQFDVVAYRLENEYNVKCVYE 463 (528)
T ss_dssp SEEEEEEESCG---------GGHHHHHHHHHHHHHTTSC-EEEEETTCCC-EEEEESSTHHHHHHHHHHHHHHCCCEEEE
T ss_pred CEEEEEEECCh---------hHHHHHHHHHHHHHhcCCe-EEEEcCCCCC-EEEEEEcHHHHHHHHHHHHHHhCcEEEEe
Confidence 99999987542 2468999999999999985 8888888999 999999999999999999865 9999999
Q ss_pred cCeeeEEEecceEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcC
Q psy1758 1303 RPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIG 1369 (1527)
Q Consensus 1303 ~P~V~yre~~g~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g 1369 (1527)
+|+|.|++ .|+.++. .-++.+....+..+-.+. +| +..|..|..=-+.
T Consensus 464 ~~~v~~~~------------~i~~~~~---~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~ 511 (528)
T 3tr5_A 464 SVNVVTAR------------WVICDDK---AVLERFNQEQSRNLAYDG--GG--HLTYLAPSRVNLE 511 (528)
T ss_dssp CCSCCEEE------------EEECSCH---HHHHHHHHHSGGGEEEET--TC--CEEEEESSHHHHH
T ss_pred cCceEEEE------------EecCCCH---hHHHHHhhhhcceEEEcC--CC--CEEEEEcCHHHHH
Confidence 99999998 3555443 345666555554444333 23 3335555544333
No 20
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=100.00 E-value=6.9e-55 Score=508.01 Aligned_cols=221 Identities=30% Similarity=0.490 Sum_probs=198.1
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
..+|||+||||.||||||||+|+|++|+.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||..|+
T Consensus 57 ~~~Gil~ldKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~iG~aTKl~~~l~~~~K~Y~a~~~lG~~~~-- 134 (400)
T 3u28_A 57 ISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALK-- 134 (400)
T ss_dssp HHTEEEEEEECSSSCHHHHHHHHHHHHTCSCEEESSCCCTTCEEEEEEEEGGGGGGHHHHHHSCEEEEEEEEESSCCS--
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHhCcCcccccCCCCCCCeEEEEEEEChHHhHhHHhcCCCcEEEEEEEeCCCCC--
Confidence 359999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--C
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--P 818 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~ 818 (1527)
+.++|+++|++|+|.|+|+||+|||+|+ ++|.++||++++++|+. |
T Consensus 135 ---------------~~~~i~~~l~~f~G~i~Q~PP~ySAvK~-----------------~~R~v~I~~i~ll~~~~~~~ 182 (400)
T 3u28_A 135 ---------------DEKDLGRSLENLTGALFQRPPLISAVKR-----------------QLRVRTIYESNLIEFDNKRN 182 (400)
T ss_dssp ---------------STTHHHHHHHHTCEEEEECCC-----CC-----------------CCEEEEEEEEEEEEEETTTT
T ss_pred ---------------CHHHHHHHHHhCcCceEEECCceecccC-----------------CceeEEEEEEEEEEEcCCCc
Confidence 4688999999999999999999999984 37999999999999987 7
Q ss_pred eEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccc-cChhHHHhhh----h--h-hhc-cccCccccc
Q psy1758 819 YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKC-LNIDTIIKYS----E--Y-ERI-SSLIPIDIL 889 (1527)
Q Consensus 819 ~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a-~~l~~l~~~~----~--~-~~~-~~L~pie~~ 889 (1527)
.++|+|+||+||||||||||||.+|||+|||++||||++|+|+++++ ++++++.+.. . . ..+ ..|+|+|.+
T Consensus 183 ~~~~~V~CskGTYIRsL~~DiG~~LG~gahm~~LrRt~~G~F~~~~a~vtL~~l~~~~~~~~~~~~~~~l~~~l~P~e~~ 262 (400)
T 3u28_A 183 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVYDNTRDESYLRSIIQPLETL 262 (400)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEETTSSCBCHHHHHHHHHHHHHHCCCHHHHHHCEEGGGG
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEcCcchhhhcCCHHHHHHhhhhhhcccchhhHhhhcCCHHHH
Confidence 89999999999999999999999999999999999999999999986 8999996531 0 0 112 358999999
Q ss_pred ccccceeeecccccceeccCcccccc
Q psy1758 890 LSSFGIIYLSDLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 890 L~~lP~i~l~d~~~~~i~nG~~i~ls 915 (1527)
+.++|.+.++++....+.||+.+...
T Consensus 263 l~~lp~V~L~deaa~~V~NGq~L~~p 288 (400)
T 3u28_A 263 LVGYKRIVVKDSAVNAVCYGAKLMIP 288 (400)
T ss_dssp GTTSCEEEECHHHHHHHHHHSEEEGG
T ss_pred HhhCCccccCHHHHHHHHCcCccccC
Confidence 99999999999999999999988753
No 21
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=1.6e-54 Score=503.93 Aligned_cols=220 Identities=32% Similarity=0.507 Sum_probs=195.6
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
.++|||+||||+||||||||+|+|++|+.+|+||+|||||+||||||||+|+|||+++||+..+|+|+++++||.
T Consensus 64 ~~~Gil~vdKP~G~TS~~vv~~vr~~l~~~KvGH~GTLDP~AtGvL~v~~G~aTk~~~~l~~~~K~Y~~~~~lG~----- 138 (357)
T 2apo_A 64 IKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHR----- 138 (357)
T ss_dssp HHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTSSCEEEEEEEEESS-----
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHhCccccccccccCCCceeEEEEEeCHHHhHHHHhccCCcEEEEEEEECC-----
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeE
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 820 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~ 820 (1527)
+++.++|++++++|+|+|+|+||+|||+| +++|+++||++++++|+.|.+
T Consensus 139 -------------~~~~~~i~~~l~~f~G~i~Q~PP~~SAvK-----------------~~~R~v~I~~~~l~~~~~~~~ 188 (357)
T 2apo_A 139 -------------DASEEDILRVFKEFTGRIYQRPPLKAAVK-----------------RRLRIRKIHELELLDKDGKDV 188 (357)
T ss_dssp -------------CCCHHHHHHHHHHHSEEEECC----------------------------CEEEEEEEEEEEEETTEE
T ss_pred -------------CCCHHHHHHHHHhCcccEEEeCCchhhcc-----------------ccccceeEEEEEEEEeeCCEE
Confidence 36899999999999999999999999988 468999999999999999999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhh-------hhhc-cccCcccccccc
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSE-------YERI-SSLIPIDILLSS 892 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~-------~~~~-~~L~pie~~L~~ 892 (1527)
+|+|+||+||||||||+|||.+|||+|||++||||++|+|++++|++++++.+... ...+ ..|+|++.++.+
T Consensus 189 ~~~v~cs~GTYIRsL~~DiG~~LG~~a~~~~LrRt~~G~f~~~~a~tl~~l~~~~~~~~~~g~~~~l~~~l~P~e~~l~~ 268 (357)
T 2apo_A 189 LFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRH 268 (357)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBCHHHHHHHHHHHHTSCCCHHHHHHEEEGGGGGTT
T ss_pred EEEEEECCCchHHHHHHHHHHhhCCCEEEEEEEEEEEccCcHHHccCHHHHHhhhhhhhccCchhhHhhheeChhHhhcc
Confidence 99999999999999999999999999999999999999999999999999976421 1112 358999999999
Q ss_pred cceeeecccccceeccCcccccc
Q psy1758 893 FGIIYLSDLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 893 lP~i~l~d~~~~~i~nG~~i~ls 915 (1527)
+|.+.++++.+..+.||+.+...
T Consensus 269 lP~v~l~~~~~~~i~nG~~L~~p 291 (357)
T 2apo_A 269 LKKVVVKDSAVDAICHGADVYVR 291 (357)
T ss_dssp SEEEEECHHHHHHHHTTCCEEGG
T ss_pred CcEEEECHHHHHHHhCcCccCCC
Confidence 99999999999999999988653
No 22
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=100.00 E-value=6e-54 Score=499.84 Aligned_cols=220 Identities=35% Similarity=0.535 Sum_probs=194.3
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
.+||||+||||.|||||||++++|++|+.+|+||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.
T Consensus 44 ~~~Gil~vdKP~g~tS~~vv~~vr~~~~~~KvGH~GTLDP~atGvL~v~~g~aTk~~~~l~~~~K~Y~~~~~lg~----- 118 (334)
T 2aus_C 44 IQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQALLPAGKEYVALMHLHG----- 118 (334)
T ss_dssp HHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTCCEEEEEEEEESS-----
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHhCcceeccccccCCccceeEEEEeChhhhhHHHhcccCcEEEEEEEECC-----
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeE
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 820 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~ 820 (1527)
+++.++|++++++|+|+|+|+||+|||+| +++|+++||++++++|+.|.+
T Consensus 119 -------------~~~~~~i~~~l~~f~G~i~Q~pP~~SA~k-----------------~~~R~v~I~~~~~~~~~~~~~ 168 (334)
T 2aus_C 119 -------------DVPEDKIRAVMKEFEGEIIQRPPLRSAVK-----------------RRLRTRKVYYIEILEIDGRDV 168 (334)
T ss_dssp -------------CCCHHHHHHHHHHTSEEEECC-----------------------------EEEEEEEEEEEEETTEE
T ss_pred -------------CCCHHHHHHHHHhCcCeEEEeCCccccCc-----------------CCcCCEEEEEEEEEEeeCCeE
Confidence 46899999999999999999999999998 468999999999999999999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCcccccc-ccChhHHHhhhh-------hhhc-cccCccccccc
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK-CLNIDTIIKYSE-------YERI-SSLIPIDILLS 891 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~-a~~l~~l~~~~~-------~~~~-~~L~pie~~L~ 891 (1527)
+|+|+||+||||||||||||.+|||+|||++||||++|+|++++ |++++++.+... ...+ +.|+|++.++.
T Consensus 169 ~~~v~cs~GTYIRsL~~Dig~~Lg~~a~~~~LrRt~~g~f~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~p~~~~l~ 248 (334)
T 2aus_C 169 LFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEEYIRKAIQPMEKAVE 248 (334)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEESSTTEECHHHHHHHHHHHHTTCCCHHHHHHSEEGGGGGT
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCCEEEeEEEEEEEccCchhhcccCHHHHHhhhhhhccccchhhhhhhccChhHhcc
Confidence 99999999999999999999999999999999999999999999 799999975421 1112 35899999999
Q ss_pred ccceeeecccccceeccCcccccc
Q psy1758 892 SFGIIYLSDLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 892 ~lP~i~l~d~~~~~i~nG~~i~ls 915 (1527)
++|.+.++++....+.||+.+...
T Consensus 249 ~~p~V~L~de~a~~V~nGq~L~~~ 272 (334)
T 2aus_C 249 HLPKIWIKDSAVAAVAHGANLTVP 272 (334)
T ss_dssp TSCEEEECHHHHHHHHTTCCEEGG
T ss_pred cccEEEECHHHHHHHHCCCccccC
Confidence 999999999999999999988653
No 23
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=4.6e-36 Score=369.10 Aligned_cols=282 Identities=25% Similarity=0.330 Sum_probs=228.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEec
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYN 983 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 983 (1527)
....+||+++||+|||||||+++|++.++.+.+.. +..++++|..+.|+++|+|++.....+.++
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 34568999999999999999999999988776433 122478999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCc-cEEEEeccCCCCCC--
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFK-PIVVVNKIDRSNAR-- 1053 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~-------~qt~~~~~~~~~~glp-~IvviNKiD~~~a~-- 1053 (1527)
+++++|||||||.+|...+.++++.+|++||||||++|++ +||++++..+..+++| +|+|+||||+...+
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 9999999999999999999999999999999999999987 7999999999999999 78899999996543
Q ss_pred ---hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEe
Q psy1758 1054 ---PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIIS 1128 (1527)
Q Consensus 1054 ---~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~ 1128 (1527)
++++.+++.+.+..++.... .++|++++||++|++..+..+ .+.....|++ +++.+|+|..+.+.||+++|.+
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~-~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~-~l~~i~~~~~~~~~p~r~~v~~ 251 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPK-KDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIP-YLDNLPNFNRSVDGPIRLPIVD 251 (439)
T ss_pred HHHHHHHHHHHHHHHHHhccccc-CCeeEEEeeccCCcccccccccccccCchHHHH-HHHhCCCCccCCCCCeEEEEEE
Confidence 34455555555544443221 257899999999984332111 1111123555 4467888888889999999999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE--Eecce--ecccCC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL--ITGIE--EICIGS 1204 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva--i~gl~--~~~iGd 1204 (1527)
++. +.|+++.|||.+|+|++||.|.++|. + ...+|.+|+.+ +.++++|.|||+|+ +.|++ +++.||
T Consensus 252 ~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~--~--~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~gi~~~~i~rG~ 321 (439)
T 3j2k_7 252 KYK--DMGTVVLGKLESGSIFKGQQLVMMPN--K--HNVEVLGILSD----DTETDFVAPGENLKIRLKGIEEEEILPGF 321 (439)
T ss_pred EEc--CCCeEEEEEEEeeEEecCCEEEEccC--C--ceEEEEEEEEC----CeEcCEecCCCcceEEEeccchhhcCCcE
Confidence 865 47999999999999999999999987 3 45789998764 46899999999998 67776 677799
Q ss_pred eeeCCCCC
Q psy1758 1205 TICDPSKP 1212 (1527)
Q Consensus 1205 Ti~~~~~~ 1212 (1527)
++|+++++
T Consensus 322 vl~~~~~~ 329 (439)
T 3j2k_7 322 ILCDPSNL 329 (439)
T ss_pred EecCCCCC
Confidence 99998764
No 24
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=7.8e-36 Score=363.29 Aligned_cols=281 Identities=25% Similarity=0.339 Sum_probs=226.9
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..||+++||+|||||||+++|++.........+...+.+|....|+++|+|++.....+.++++.++|||||||.+|..+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 36899999999999999999987522111111112235788899999999999988888888899999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
+.++++.+|++||||||++|+++||+++|..+...++|. ++|+||+|+.+.. .+.+.+++.+.+..++.. .-.+|
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 160 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK--GEETP 160 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC--TTTSC
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC--cccCc
Confidence 999999999999999999999999999999999999995 7899999997521 223445555555444321 12478
Q ss_pred EEEeccccCCcCCCcccccCC-ChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEe
Q psy1758 1079 VIYTSALHGYANENSKARQGN-MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~g-i~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~ 1157 (1527)
++++||++|++..+..+. .| +.+|+++|.+++|+|..+.++||+++|++++++++.|++++|||++|+|++||.|.++
T Consensus 161 ~i~~SA~~g~n~~~~~~~-~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 161 IIVGSALCALEQRDPELG-LKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp EEECCHHHHHTTCCTTTT-HHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred EEEeehhhcccccCCCcc-CCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEe
Confidence 999999998632221111 14 8899999999999998888999999999999999999999999999999999999998
Q ss_pred cCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cc--eecccCCeeeCCCC
Q psy1758 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1158 ~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~iGdTi~~~~~ 1211 (1527)
+. +.....+|.+|..+. .++++|.|||+|++. |+ +++..||+||+++.
T Consensus 240 ~~--~~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~ 291 (397)
T 1d2e_A 240 GH--SKNIRTVVTGIEMFH----KSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGS 291 (397)
T ss_dssp ET--TEEEEEEEEEEEETT----EEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred CC--CCCeEEEEEEEEECC----cccCEecCCCceEEEecccchhccCceeEEeCCCC
Confidence 76 212457899987653 689999999999775 65 57899999998763
No 25
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=2.2e-35 Score=360.58 Aligned_cols=283 Identities=27% Similarity=0.377 Sum_probs=226.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccc-cccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRK-NQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~-~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
...+||+++||+|||||||+++|++....... ..+.....+|..+.|+++|+|++.....+.++++.++|||||||.+|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 34579999999999999999999874111000 01112235788999999999999988889988999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC--hhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
...+.++++.+|++|+|||+++|.++||+++|..+...++| +++|+||+|+.+.. .+.+.+++.+.+..++.. ..
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~--~~ 166 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP--GD 166 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC--TT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc--cc
Confidence 99999999999999999999999999999999999999999 67899999997521 223344555555444321 12
Q ss_pred CCcEEEeccccCCcCC---------CcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecC
Q psy1758 1076 DFPVIYTSALHGYANE---------NSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSG 1146 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~---------~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG 1146 (1527)
.+|++++||++|.+.. ...+ ..++.+|++++.+++|+|..+.++||+++|++++++++.|++++|||++|
T Consensus 167 ~~~~i~~SA~~g~~v~~~~~~~~~~~~~~-~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G 245 (405)
T 2c78_A 167 EVPVIRGSALLALEQMHRNPKTRRGENEW-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERG 245 (405)
T ss_dssp TSCEEECCHHHHHHHHHHCTTCCTTSCHH-HHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBS
T ss_pred CCCEEEccHHHhhhhhccccccccCCCcc-cccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecc
Confidence 4689999999997310 0000 01278999999999999988889999999999999999999999999999
Q ss_pred ccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cc--eecccCCeeeCCC
Q psy1758 1147 RIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPS 1210 (1527)
Q Consensus 1147 ~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~iGdTi~~~~ 1210 (1527)
+|++||.|.+++.+++ ....+|.+|+.+ +.++++|.|||+|++. |+ +++..||+||+++
T Consensus 246 ~l~~gd~v~~~~~~~~-~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 246 KVKVGDEVEIVGLAPE-TRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp EEETTCEEEEESSSSS-CEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred cccCCCEEEEeCCCCC-eeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 9999999999987211 245789998765 3689999999999775 65 6789999999875
No 26
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=3.9e-35 Score=361.15 Aligned_cols=282 Identities=26% Similarity=0.323 Sum_probs=217.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccccc---------------ccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQN---------------INARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~---------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
...+||+++||+|||||||+++|++.++.+.+... ..++++|..+.|+++|+|++.....+.+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35689999999999999999999988666543210 012578999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-------CChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC---
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--- 1053 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-------~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--- 1053 (1527)
++++|||||||.+|..++.++++.+|++||||||++| +++||++++..+...++| +|+|+||+|+.+++
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999999 889999999999999986 67889999998742
Q ss_pred --hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccc--cCCChhHHHHHHhhcCCCCCCCCCCceeEEEee
Q psy1758 1054 --PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKAR--QGNMIPLFEAILKYVPVHKDNSNNPLQLQIISL 1129 (1527)
Q Consensus 1054 --~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~--~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~ 1129 (1527)
++.+.+++.+.+..++... ..+|++++||++|.+..+.... +..-..|++++ +.+|+|....+.||+++|..+
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~--~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l-~~~~~p~~~~~~~~~~~v~~v 240 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNT--NKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYL-DQLELPPKPVDKPLRIPIQDV 240 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--TTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHH-TTCCCCCCGGGSCCBEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCc--CCceEEEeecccCccccccccccccccchhHHHHH-hccCCCCCCCCCCeEEEEEEE
Confidence 2445566666655443221 2468999999999843322110 00003788886 556777766688999999999
Q ss_pred eccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--c--ceecccCCe
Q psy1758 1130 EYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--G--IEEICIGST 1205 (1527)
Q Consensus 1130 ~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--g--l~~~~iGdT 1205 (1527)
++.++.|++++|||++|+|++||.|.+.+. + ...+|.+|+.+ ..++++|.|||+|++. | .+++..||+
T Consensus 241 ~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~ 312 (435)
T 1jny_A 241 YSISGVGTVPVGRVESGVLKVGDKIVFMPA--G--KVGEVRSIETH----HTKMDKAEPGDNIGFNVRGVEKKDIKRGDV 312 (435)
T ss_dssp EEETTTEEEEEEECCBSCEETTCEEEEETT--T--EEEEEEEEEET----TEEESEECTTCEEEEEEESSCGGGCCTTCE
T ss_pred EEeCCCcEEEEEEEecCeEEcCCEEEECCc--e--eEEEEEEEEEC----CcEEeEEcCCCEEEEEEecCCHHHcCCccE
Confidence 999999999999999999999999999976 2 56789999764 4789999999999874 4 468899999
Q ss_pred eeCCCCC
Q psy1758 1206 ICDPSKP 1212 (1527)
Q Consensus 1206 i~~~~~~ 1212 (1527)
||+++++
T Consensus 313 l~~~~~~ 319 (435)
T 1jny_A 313 VGHPNNP 319 (435)
T ss_dssp EECTTSC
T ss_pred ecCCCCC
Confidence 9987544
No 27
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=6.3e-34 Score=355.02 Aligned_cols=286 Identities=21% Similarity=0.251 Sum_probs=217.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccc---------------ccccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN---------------QNINARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~---------------~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
....||+++||+|+|||||+++|++.++.+... .+..++++|....|+++|+|++.....+.+.+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 345799999999999999999999987766532 12235789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-------CChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC---
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--- 1053 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-------~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--- 1053 (1527)
++++|||||||.+|...+.++++.+|++||||||++| +.+||++++..+...++| +|+|+||+|+.+++
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 9999999999999999999999999999999999998 678999999999999976 77889999998754
Q ss_pred hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--------ccCCChhHHHHHHhhcCC--CCCCCCCCce
Q psy1758 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--------RQGNMIPLFEAILKYVPV--HKDNSNNPLQ 1123 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--------~~~gi~~Ll~~i~~~lp~--p~~~~~~p~~ 1123 (1527)
.+++.+++.+.+..++... ..+|++++||++|.+..+... ....+.++|+.+...+|+ |..+.+.||+
T Consensus 191 ~~~i~~~~~~~l~~~g~~~--~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r 268 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFE--DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 268 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCG--GGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCE
T ss_pred HHHHHHHHHHHHHHcCCCc--ccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceE
Confidence 3444555555555444322 136899999999985443211 012345667777777776 6677889999
Q ss_pred eEEEeeeccc---cCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEee----cCceeEeeeeecCCEEEE--
Q psy1758 1124 LQIISLEYSS---YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK----GLDRVLVNEALSGDIVLI-- 1194 (1527)
Q Consensus 1124 ~~V~~~~~d~---~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~----g~~~~~v~~a~AGdIvai-- 1194 (1527)
++|..++..+ +.|+++.|||.+|+|++||.|.+++. + ...+|.+|+.+. |+++.++++|.|||+|++
T Consensus 269 ~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l 344 (483)
T 3p26_A 269 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPS--E--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKL 344 (483)
T ss_dssp EEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETT--T--EEEEEEEEEETTTC-----CCEESCEETTCEEEEEE
T ss_pred EEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCC--C--CeEEEEEEEEcCccccccccccccEECCCCEEEEEE
Confidence 9999999877 48999999999999999999999987 3 457899998874 677889999999999987
Q ss_pred ec--ceecccCCeeeCCCC
Q psy1758 1195 TG--IEEICIGSTICDPSK 1211 (1527)
Q Consensus 1195 ~g--l~~~~iGdTi~~~~~ 1211 (1527)
.+ .+++..||+||++++
T Consensus 345 ~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 345 RKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp ESCCGGGCCTTCEEECTTC
T ss_pred EecccccCCceEEEEcCCC
Confidence 33 468999999999876
No 28
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.1e-34 Score=359.71 Aligned_cols=282 Identities=24% Similarity=0.288 Sum_probs=195.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
...+||+++||+|||||||+++|++.++.+.+.. ....+++|..+.|+++|+|++.....+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999998877764321 1124678999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCc-cEEEEeccCCCCCC---
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--- 1053 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~-------~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--- 1053 (1527)
++++|||||||.+|..++.++++.+|++||||||++|++ +||++++..+...++| +|+|+||+|+.+++
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 999999999999999999999999999999999999974 7999999999999998 78889999997543
Q ss_pred --hhhhHHHHHHHHhhh-cccccccCCcEEEeccccCCcCCCccc----ccCCChhHHHHHHhhcCCCCCCCCCCceeEE
Q psy1758 1054 --PEWVVDATFDLFDKL-CATEEQLDFPVIYTSALHGYANENSKA----RQGNMIPLFEAILKYVPVHKDNSNNPLQLQI 1126 (1527)
Q Consensus 1054 --~~~v~~~~~~~~~~l-~~~~~~~~~pvi~~SA~~g~~~~~~~~----~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V 1126 (1527)
++.+.+++.+.+..+ +... ..++|++++||++|.+..+... .+.....|++.+ +.+|.|..+.++||+++|
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~-~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~~~~~p~~~~v 278 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNS-KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLERKVNAPFIMPI 278 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH-HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHHHHTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-cCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcCCCCCCcEEEE
Confidence 234455565555443 2210 1146899999999985433211 111123466554 678888777789999999
Q ss_pred EeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ec-ceecccC
Q psy1758 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TG-IEEICIG 1203 (1527)
Q Consensus 1127 ~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~g-l~~~~iG 1203 (1527)
.+++.+ .|++++|||.+|+|++||.|.+++. + ...+|.+|+.+ .+.++++|.|||+|++ .| .+++..|
T Consensus 279 ~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~~~i~rG 349 (467)
T 1r5b_A 279 ASKYKD--LGTILEGKIEAGSIKKNSNVLVMPI--N--QTLEVTAIYDE---ADEEISSSICGDQVRLRVRGDDSDVQTG 349 (467)
T ss_dssp CEEEES--SSEEEEEECCBSEEETTEEEEEETT--T--EEEEEEEEECT---TCCEESEEETTCEEEEEEESCCTTCCTT
T ss_pred EEEEeC--CCeEEEEEEeeeEEeeCCEEEEccC--C--eeEEEEEEecc---CCcEeeEEcCCCEEEEEEeccHhhCCce
Confidence 998653 7999999999999999999999976 2 45688888654 3568999999999987 56 5678999
Q ss_pred CeeeCCCCC
Q psy1758 1204 STICDPSKP 1212 (1527)
Q Consensus 1204 dTi~~~~~~ 1212 (1527)
|+||+++++
T Consensus 350 ~vl~~~~~~ 358 (467)
T 1r5b_A 350 YVLTSTKNP 358 (467)
T ss_dssp CEEECSSSC
T ss_pred EEEeCCCCC
Confidence 999987643
No 29
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7e-35 Score=369.80 Aligned_cols=282 Identities=22% Similarity=0.259 Sum_probs=189.6
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEec
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYN 983 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 983 (1527)
....+||+|+||+|||||||+++|++.++.+.... +...+++|..+.|+++|+|++.....+.++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45678999999999999999999998766654331 112578999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-------ChhHHHHHHHHHHcCCc-cEEEEeccCCCCCCh-
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-------MPQTRFVTRKALKLGFK-PIVVVNKIDRSNARP- 1054 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-------~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~~- 1054 (1527)
++.++|||||||.+|...+.++++.+|++||||||++|. ++||++++..+..+++| +|+|+||+|+.+++.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 999999999999999999999999999999999999865 89999999999999998 678999999987543
Q ss_pred --hhhHHHHHHHH-hhhcccccccCCcEEEeccccCCcCCCcc----cccCCChhHHHHHHhhcCCCCCCCCCCceeEEE
Q psy1758 1055 --EWVVDATFDLF-DKLCATEEQLDFPVIYTSALHGYANENSK----ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII 1127 (1527)
Q Consensus 1055 --~~v~~~~~~~~-~~l~~~~~~~~~pvi~~SA~~g~~~~~~~----~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~ 1127 (1527)
+.+.+++.+.+ ..++... -.+|++++||++|.+..+.. ..+.....|++.|...+| |..+.+.||+++|.
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~--~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~ 410 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKT--SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSID 410 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCG--GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCc--cceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheee
Confidence 33445555544 3333221 23589999999998433211 112222379999977776 66677899999999
Q ss_pred eeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEee-eeecCCEEEE--ecce--eccc
Q psy1758 1128 SLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVN-EALSGDIVLI--TGIE--EICI 1202 (1527)
Q Consensus 1128 ~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~-~a~AGdIvai--~gl~--~~~i 1202 (1527)
++++. +.|++++|||.+|+|++||.|.++|. + ...+|.+|+.+ +.+++ +|.|||+|++ .|++ ++..
T Consensus 411 ~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~--~--~~~~V~~i~~~----~~~~~~~a~aG~~v~~~l~~i~~~~i~r 481 (592)
T 3mca_A 411 DVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSS--Q--EDAYVKNVIRN----SDPSSTWAVAGDTVTLQLADIEVNQLRP 481 (592)
T ss_dssp EEEEE-TTEEEEEEEEEESEEETTCEEEETTT--T--EEEEEEEEECS----SSCSCCEEETTCEEEEEESSSCGGGCCT
T ss_pred EEEec-CCeEEEEEEEeeeeEccCCEEEEccC--C--ceEEEEEEEEc----CccCcceecCCCEEEEEEccccccccce
Confidence 99999 99999999999999999999999876 3 35789988764 35889 9999999975 5754 6889
Q ss_pred CCeeeCCCCC
Q psy1758 1203 GSTICDPSKP 1212 (1527)
Q Consensus 1203 GdTi~~~~~~ 1212 (1527)
||+||+++.|
T Consensus 482 G~vl~~~~~~ 491 (592)
T 3mca_A 482 GDILSNYENP 491 (592)
T ss_dssp TCEEECSSSC
T ss_pred EEEeccCCCC
Confidence 9999997653
No 30
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=2.6e-34 Score=372.72 Aligned_cols=282 Identities=27% Similarity=0.365 Sum_probs=212.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....||+++||+|||||||+++|++.........+...+.+|..+.|+++|+|++.....+.+++++++|||||||.+|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 34579999999999999999999875211100111112367889999999999999988898889999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.++.++++.+|++|||||+++|+++||++++..+...++| +|+|+||+|+.+.. .+.+.+++.+.+...+.. ...
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~--~~~ 451 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP--GDD 451 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC--TTT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc--ccc
Confidence 9999999999999999999999999999999999999999 57889999997521 223445566555544321 124
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
+|++++||++|+.. +.. ...|+.+|++.|.+++|.|..+.++||+++|.+++.+++.|++++|||++|+|++||.|.+
T Consensus 452 vp~IpvSAktG~ng-~~~-w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I 529 (1289)
T 3avx_A 452 TPIVRGSALKALEG-DAE-WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 529 (1289)
T ss_dssp CCEEECCSTTTTTC-CHH-HHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEE
T ss_pred eeEEEEEeccCCCC-Ccc-ccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEE
Confidence 79999999999421 100 1136889999999999999888889999999999999999999999999999999999999
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cc--eecccCCeeeCCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~iGdTi~~~~~ 1211 (1527)
++. +.....+|.+|..+ ..++++|.|||+|++. |+ +++..||+|++++.
T Consensus 530 ~ps--~~~~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~ 582 (1289)
T 3avx_A 530 VGI--KETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 582 (1289)
T ss_dssp ESS--SSCEEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred ecC--CCceeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccEEecCCC
Confidence 877 21245789988665 3589999999999764 66 57889999998764
No 31
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.8e-33 Score=346.43 Aligned_cols=282 Identities=23% Similarity=0.281 Sum_probs=218.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccc------------ccc-----cceecchhhhhcccceeEeeeeEEEEe
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------QNI-----NARIMDSNEIEKERGITIFSKNCSIEY 982 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~~~-----~~~~~D~~~~E~erGiTi~~~~~~~~~ 982 (1527)
...++|+++||+|||||||+++|++..+.+... +.+ ..+.+|..+.|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999999886544321 111 124689999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCChh---hhH
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNARPE---WVV 1058 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~~~---~v~ 1058 (1527)
++++++|||||||.+|..++.++++.+|++||||||++|+++||++++..+...++| +|+|+||+|+.+++.+ .+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 6888999999875432 344
Q ss_pred HHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCc
Q psy1758 1059 DATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLG 1136 (1527)
Q Consensus 1059 ~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G 1136 (1527)
+++.+.+..++.. ...+|++++||++|.+..+... .+.....|++ +++.+|.|..+.+.||+++|..++...+.|
T Consensus 182 ~~~~~~~~~~g~~--~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~-~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~ 258 (434)
T 1zun_B 182 ADYLKFAEGIAFK--PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLME-ILETVEIASDRNYTDLRFPVQYVNRPNLNF 258 (434)
T ss_dssp HHHHHHHHTTTCC--CSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTH-HHHHSCCTTCCCSSSCEEECCEEECSSSSC
T ss_pred HHHHHHHHHhCCC--ccCceEEEEeccCCCCcccccccCccccCchHHH-HHhcCCCcccCCCCCcEEEEEEEeccCCCc
Confidence 5555544444310 1236899999999984332211 1111122554 456788888888899999999998877788
Q ss_pred eEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecce--ecccCCeeeCCCCC
Q psy1758 1137 KIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIE--EICIGSTICDPSKP 1212 (1527)
Q Consensus 1137 ~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~--~~~iGdTi~~~~~~ 1212 (1527)
+...|||.+|+|++||.|.+++. + ...+|.+|+.+. .++++|.|||+|++.+.+ ++..||+|++++++
T Consensus 259 ~g~~G~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~~ 328 (434)
T 1zun_B 259 RGFAGTLASGIVHKGDEIVVLPS--G--KSSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLVHADNV 328 (434)
T ss_dssp CEEEEECCBSCEETTCEEEETTT--C--CEEEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEEETTSC
T ss_pred eEEEEEEecceEeCCCEEEEecC--C--eEEEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEECCCCC
Confidence 99999999999999999999876 3 457899998775 479999999999987654 57789999987653
No 32
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=2.4e-33 Score=346.83 Aligned_cols=280 Identities=26% Similarity=0.336 Sum_probs=227.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccc------------c---cccceecchhhhhcccceeEeeeeEEEEecCe
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------Q---NINARIMDSNEIEKERGITIFSKNCSIEYNGT 985 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~---~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 985 (1527)
...+|+++||+|||||||+++|++.++.+... + +..++++|..+.|+++|+|++.....+.++++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 45799999999999999999999886655421 1 11235789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCCh-------hHHHHHHHHHHcCCc-cEEEEeccCCCCCCh---
Q psy1758 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP-------QTRFVTRKALKLGFK-PIVVVNKIDRSNARP--- 1054 (1527)
Q Consensus 986 ~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~-------qt~~~~~~~~~~glp-~IvviNKiD~~~a~~--- 1054 (1527)
+++|||||||.+|..++.++++.+|++||||||++|+++ ||++++..+...++| +|+|+||+|+.+++.
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999998776 999999999999997 778899999975432
Q ss_pred hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccc--cC---------C---ChhHHHHHHhhcCCCCCCCCC
Q psy1758 1055 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKAR--QG---------N---MIPLFEAILKYVPVHKDNSNN 1120 (1527)
Q Consensus 1055 ~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~--~~---------g---i~~Ll~~i~~~lp~p~~~~~~ 1120 (1527)
+.+.+++.+.+..++... .++|++++||++|.+..+.... +. | ...|++++ +.+|+|....+.
T Consensus 166 ~~i~~~~~~~l~~~g~~~--~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l-~~~~~p~~~~~~ 242 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYNP--KTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAI-DAIEQPSRPTDK 242 (458)
T ss_dssp HHHHHHHHHHHHHHTCCG--GGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHH-HTSCCCCCCTTS
T ss_pred HHHHHHHHHHHHHcCCCc--cCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHh-hccCCCcccCCC
Confidence 345556665555444221 1368999999999864332110 00 0 23688885 567888888899
Q ss_pred CceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc-
Q psy1758 1121 PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI- 1197 (1527)
Q Consensus 1121 p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl- 1197 (1527)
||+++|..++..++.|++++|||.+|++++||+|.++|. + ...+|.+|..+ ..++++|.|||+|++ .|+
T Consensus 243 p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~----~~~~~~a~aG~~v~i~l~gi~ 314 (458)
T 1f60_A 243 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPA--G--VTTEVKSVEMH----HEQLEQGVPGDNVGFNVKNVS 314 (458)
T ss_dssp CCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETT--T--EEEEEEEEEET----TEECSCBCTTCEEEEEESSCC
T ss_pred CcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCC--C--ceEEEeEEEEC----CeEEEEEcCCCEEEEEEcCCc
Confidence 999999999999999999999999999999999999977 2 45789888754 368999999999976 466
Q ss_pred -eecccCCeeeCCCC
Q psy1758 1198 -EEICIGSTICDPSK 1211 (1527)
Q Consensus 1198 -~~~~iGdTi~~~~~ 1211 (1527)
++++.||+|+++++
T Consensus 315 ~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 315 VKEIRRGNVCGDAKN 329 (458)
T ss_dssp TTTSCTTCEEEETTS
T ss_pred ccccCceeEEecCCC
Confidence 57889999999764
No 33
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=8e-33 Score=332.20 Aligned_cols=237 Identities=19% Similarity=0.138 Sum_probs=200.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
||+++||+|||||||+++|+ ++|+|++.....+.+++++++|||||||.+|..++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 99999999999999999996 589999999999999999999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEe-ccCCCCCC-hhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVN-KIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviN-KiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
++++.+|++||||| .+|+++||++++..+...++|. |+|+| |+|+ +.+ .+++.+++++.+..... ..+|++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~----~~~~ii 152 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVL----QDWECI 152 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTT----TTCEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCC----CceEEE
Confidence 99999999999999 9999999999999999999999 89999 9999 432 23344556555433221 246899
Q ss_pred E--ecccc---CCcCCCcccccCCChhHHHHHHhhcCCCCC---C-CCCCceeEEEeeeccccCceEEEEEeecCccccC
Q psy1758 1081 Y--TSALH---GYANENSKARQGNMIPLFEAILKYVPVHKD---N-SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSL 1151 (1527)
Q Consensus 1081 ~--~SA~~---g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~---~-~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~G 1151 (1527)
+ +||++ |. |+++|++.|.+.+|+|.. . ...|++++|..++..++.|++++|||++|++++|
T Consensus 153 ~~~~SA~~~~~g~----------gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~g 222 (370)
T 2elf_A 153 SLNTNKSAKNPFE----------GVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDK 222 (370)
T ss_dssp ECCCCTTSSSTTT----------THHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETT
T ss_pred ecccccccCcCCC----------CHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeC
Confidence 9 99999 87 999999999999886521 1 3456777799999999999999999999999999
Q ss_pred CEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--c--ceecccCCeeeC
Q psy1758 1152 QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--G--IEEICIGSTICD 1208 (1527)
Q Consensus 1152 d~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--g--l~~~~iGdTi~~ 1208 (1527)
|+|.+.+. + ...+|.+|+.+ ..++++|.|||+|++. | .+++..||+||+
T Consensus 223 d~v~~~p~--~--~~~~V~~i~~~----~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 223 DKTKIFPL--D--RDIEIRSIQSH----DVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp CEEEEETT--T--EEEEEEEEEET----TEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CEEEECCC--C--cEEEEeEEEEC----CCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 99999977 2 46789998765 2789999999999876 5 458899999997
No 34
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-33 Score=355.44 Aligned_cols=286 Identities=21% Similarity=0.253 Sum_probs=228.2
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccc---------------ccccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN---------------QNINARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~---------------~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
....+|+++||+|||||||+++|++.++.+... .....+++|....|+++|+|++.....+.+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 345799999999999999999999887665432 12235788999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-------CChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC---
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--- 1053 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-------~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--- 1053 (1527)
++++|||||||.+|...+.++++.+|++||||||++| +.+||++++..+...++| +|+|+||+|+.+++
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 9999999999999999999999999999999999987 578999999999999987 67889999998743
Q ss_pred hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc-----cc---CCChhHHHHHHhhcCC--CCCCCCCCce
Q psy1758 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA-----RQ---GNMIPLFEAILKYVPV--HKDNSNNPLQ 1123 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~-----~~---~gi~~Ll~~i~~~lp~--p~~~~~~p~~ 1123 (1527)
.+++.+++...+..++... -.+|++++||++|.+..+... .+ ..+.++|+.+...+|. |....+.||+
T Consensus 325 ~~ei~~~l~~~l~~~g~~~--~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFE--DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCG--GGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHhhcccc--cCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchh
Confidence 3444555555555444322 136899999999985443211 01 1122333333333444 4556789999
Q ss_pred eEEEeeeccc---cCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEee----cCceeEeeeeecCCEEEE--
Q psy1758 1124 LQIISLEYSS---YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK----GLDRVLVNEALSGDIVLI-- 1194 (1527)
Q Consensus 1124 ~~V~~~~~d~---~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~----g~~~~~v~~a~AGdIvai-- 1194 (1527)
++|..++..+ +.|+++.|||.+|+|++||.|.++|. + ...+|.+|+.+. |+.+.++++|.|||+|++
T Consensus 403 ~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~--~--~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l 478 (611)
T 3izq_1 403 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPS--E--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKL 478 (611)
T ss_dssp EECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTT--T--EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEE
T ss_pred hheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecC--C--ceEEEEEEEEcccccccccccccceecCCCcceEEe
Confidence 9999999987 48999999999999999999999877 3 357899998874 777889999999999987
Q ss_pred ecc--eecccCCeeeCCCC
Q psy1758 1195 TGI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1195 ~gl--~~~~iGdTi~~~~~ 1211 (1527)
.|+ .++..||+||++++
T Consensus 479 ~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 479 RKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp SSCCTTSCCTTCEEBCSTT
T ss_pred eeccHhhCcceEEccCCCC
Confidence 444 68899999999876
No 35
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=3e-32 Score=333.46 Aligned_cols=261 Identities=27% Similarity=0.363 Sum_probs=207.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----------------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---------------- 983 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---------------- 983 (1527)
...+||+++||+|||||||+++|+.. .+|....|+++|+|++.....+.+.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~ 74 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPY 74 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC-------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCC-------------ccccChhhhcCCcEEEEeeeeeecccccccccccccccccc
Confidence 45689999999999999999999743 1366778999999998876665541
Q ss_pred -------CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCC-ccEEEEeccCCCCCCh
Q psy1758 984 -------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGF-KPIVVVNKIDRSNARP 1054 (1527)
Q Consensus 984 -------~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~gl-p~IvviNKiD~~~a~~ 1054 (1527)
.+.++|||||||.+|..++.++++.+|++||||||++|. ++||++++..+..+++ |+++|+||+|+.+.+.
T Consensus 75 ~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 75 CGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp TCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred cCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH
Confidence 178999999999999999999999999999999999997 9999999999888887 4678899999976431
Q ss_pred -hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeee---
Q psy1758 1055 -EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE--- 1130 (1527)
Q Consensus 1055 -~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~--- 1130 (1527)
.+..+++.+.+... ....+|++++||++|. |++.|+++|.+.+|.|..+.+.|++++|..++
T Consensus 155 ~~~~~~~i~~~l~~~----~~~~~~~i~vSA~~g~----------gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~ 220 (410)
T 1kk1_A 155 ALENYRQIKEFIEGT----VAENAPIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVN 220 (410)
T ss_dssp HHHHHHHHHHHHTTS----TTTTCCEEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCS
T ss_pred HHHHHHHHHHHHHhc----CcCCCeEEEeeCCCCC----------CHHHHHHHHHHhCCCCccccCCCcEEEEEEEEecc
Confidence 23445555544321 1235789999999998 99999999999999998888899999998765
Q ss_pred -----ccccCceEEEEEeecCccccCCEEEEecCC----CCC----cCcceeeeEEEeecCceeEeeeeecCCEEEEec-
Q psy1758 1131 -----YSSYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLITG- 1196 (1527)
Q Consensus 1131 -----~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~----~g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~g- 1196 (1527)
++++.|++++|||++|+|++||.|.+++.. +|. ....+|.+|+.. +.++++|.|||+|++..
T Consensus 221 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~----~~~v~~a~aG~~v~~~~~ 296 (410)
T 1kk1_A 221 KPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAG----GQFVEEAYPGGLVGVGTK 296 (410)
T ss_dssp CCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEEES
T ss_pred CCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEEC----CeEecEEcCCCEEEEEEe
Confidence 567799999999999999999999998651 010 013567777643 47899999999998752
Q ss_pred ----c--eecccCCeeeCCCC
Q psy1758 1197 ----I--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1197 ----l--~~~~iGdTi~~~~~ 1211 (1527)
+ .++..||+||+++.
T Consensus 297 ~~~~~~~~d~~~G~vl~~~~~ 317 (410)
T 1kk1_A 297 LDPYLTKGDLMAGNVVGKPGK 317 (410)
T ss_dssp SCGGGTGGGTTTTCEEECTTC
T ss_pred cCcccchhhccceeEEecCCC
Confidence 2 46778999998764
No 36
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.97 E-value=1.5e-31 Score=326.78 Aligned_cols=261 Identities=26% Similarity=0.331 Sum_probs=199.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe---------------c-
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---------------N- 983 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---------------~- 983 (1527)
...+||+++||+|||||||+++|+.. .+|....|+++|+|++.....+.+ .
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~ 72 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPN 72 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSC-------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC-------------ccccCcccccCCcEEEecccccccccccccccccccccccc
Confidence 34689999999999999999999743 135667889999999876554433 1
Q ss_pred -------CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCC-ccEEEEeccCCCCCC-
Q psy1758 984 -------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGF-KPIVVVNKIDRSNAR- 1053 (1527)
Q Consensus 984 -------~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~gl-p~IvviNKiD~~~a~- 1053 (1527)
.+.++|||||||.+|..++.++++.+|++||||||++|. ++||++++..+..+++ |+++|+||+|+.+.+
T Consensus 73 ~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 73 CLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp SCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT
T ss_pred cCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH
Confidence 178999999999999999999999999999999999997 9999999998888887 567899999997654
Q ss_pred hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeee---
Q psy1758 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE--- 1130 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~--- 1130 (1527)
.....+++.+.+.... ...+|++++||++|. |+++|+++|.+.+|.|..+.+.|++++|.+++
T Consensus 153 ~~~~~~~i~~~l~~~~----~~~~~~i~vSA~~g~----------gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~ 218 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTI----AENAPIIPISAHHEA----------NIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDIN 218 (408)
T ss_dssp TTTHHHHHHHHHTTST----TTTCCEEEC----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhhcC----CCCCeEEEeeCCCCC----------CHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeec
Confidence 2345566665543321 225789999999998 99999999999999998888999999998765
Q ss_pred -----ccccCceEEEEEeecCccccCCEEEEecCC----CCC----cCcceeeeEEEeecCceeEeeeeecCCEEEEec-
Q psy1758 1131 -----YSSYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLITG- 1196 (1527)
Q Consensus 1131 -----~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~----~g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~g- 1196 (1527)
++++.|.++.|+|.+|+|++||.|.+.|.. +|. ....+|.+|+.+ +.++++|.|||+|++..
T Consensus 219 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~~~ 294 (408)
T 1s0u_A 219 KPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG----NTILRKAHPGGLIGVGTT 294 (408)
T ss_dssp CSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET----TEEESEECSSSCEEEECS
T ss_pred CCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEEC----CEEcCEEeCCCeEEEEec
Confidence 566789999999999999999999998641 111 124688888764 36899999999999843
Q ss_pred ----c--eecccCCeeeCCCC
Q psy1758 1197 ----I--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1197 ----l--~~~~iGdTi~~~~~ 1211 (1527)
+ +++..||++|+++.
T Consensus 295 ~~~~~~~~~~~~G~vl~~~~~ 315 (408)
T 1s0u_A 295 LDPYLTKSDALTGSVVGLPGT 315 (408)
T ss_dssp SCGGGTGGGTTTTCEEESTTC
T ss_pred cCcccchhhccceeEEECCCC
Confidence 2 36778999998764
No 37
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.97 E-value=1.7e-32 Score=340.70 Aligned_cols=259 Identities=25% Similarity=0.306 Sum_probs=204.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..||+++||+|||||||+++|+... ....+|....|+++|+|++.....+.++++.++|||||||.+|.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~---------~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~ 87 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLI 87 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCC---------cccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHH
Confidence 345799999999999999999998542 12457888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhh-cccccccCC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKL-CATEEQLDF 1077 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l-~~~~~~~~~ 1077 (1527)
.++.++++.+|++||||||++|+++||++++..+...++|.|+|+||+|+.+.+ .+.+.+++.+.+... .. ..+
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~----~~~ 163 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL----KNS 163 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG----GGC
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc----ccc
Confidence 999999999999999999999999999999999999999999999999997532 344555555554332 11 146
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC--CCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEE
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH--KDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 1155 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p--~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~ 1155 (1527)
|++++||++|. |+++|+++|.+.+|.| ..+.++||+++|.+++..++.|.++.|+|.+|+|++||.|.
T Consensus 164 ~ii~vSA~~g~----------gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~ 233 (482)
T 1wb1_A 164 SIIPISAKTGF----------GVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELK 233 (482)
T ss_dssp CEEECCTTTCT----------THHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEEC
T ss_pred eEEEEECcCCC----------CHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEE
Confidence 89999999998 9999999999988766 66678899999999999999999999999999999999999
Q ss_pred EecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCee-eCC
Q psy1758 1156 IMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTI-CDP 1209 (1527)
Q Consensus 1156 ~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi-~~~ 1209 (1527)
++|. + ...+|.+|+.+ ..++++|.|||.|++ +|++ ++..||+| +++
T Consensus 234 ~~p~--~--~~~~V~~i~~~----~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~ 284 (482)
T 1wb1_A 234 VLPI--N--MSTKVRSIQYF----KESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKD 284 (482)
T ss_dssp CTTT--C--CCEEECCBCGG----GSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred ECCC--C--cEEEEeEEEEC----CeEeeEecCCCEEEEEecCCCHhhccccceEecCC
Confidence 9876 2 35688888755 357899999999876 4754 67889999 444
No 38
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.97 E-value=4.8e-32 Score=342.42 Aligned_cols=348 Identities=20% Similarity=0.229 Sum_probs=245.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe------------------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------ 982 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------ 982 (1527)
+.++|+|+||+|||||||+++|++....... .+|+|.......+.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e----------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE----------------AGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC--------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc----------------CCceecccCeEEEeechhhhhcccccccccccc
Confidence 3468999999999999999999865211100 023443333233322
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-Ch-------
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RP------- 1054 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~------- 1054 (1527)
....++|||||||.+|..++.++++.+|++|||+|+++|+++||..+|..+...++|+++|+||+|+... ..
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchH
Confidence 2236999999999999999999999999999999999999999999999999999999999999999642 11
Q ss_pred -------hhhHH-------HHHHHHhhhcccc--------cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1055 -------EWVVD-------ATFDLFDKLCATE--------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1055 -------~~v~~-------~~~~~~~~l~~~~--------~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+.+.+ ++.+.+.+.+... ....+|++++||++|. |+++|+++|...+|
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~----------GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE----------GIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC----------CchhHHHHHHhhcc
Confidence 11111 2222222111111 1234699999999998 99999999998876
Q ss_pred CCC-----CCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEee--------cCc
Q psy1758 1113 VHK-----DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK--------GLD 1179 (1527)
Q Consensus 1113 ~p~-----~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~--------g~~ 1179 (1527)
.|. .++++|++++|+++.++++.|+++++||++|+|++||.|.+.+. .+ ....+|.+|+.+. +.+
T Consensus 218 ~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~-~~-~~~~rV~~i~~~~~~~elr~~~~~ 295 (594)
T 1g7s_A 218 QYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTS-KD-VISTRIRSLLKPRPLEEMRESRKK 295 (594)
T ss_dssp HHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBS-SS-EEEEECCEEEEECCCC----CCCS
T ss_pred ccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCC-CC-ceeEEEeEEEeccccchhhhccCC
Confidence 432 35689999999999999999999999999999999999999876 22 2345899998873 566
Q ss_pred eeEeeeee--cCCEEEEecceecccCCeeeCCCCCC--------CCCCCccCCCceeEEEEecCCCCCCCCCccccHHHH
Q psy1758 1180 RVLVNEAL--SGDIVLITGIEEICIGSTICDPSKPN--------GLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQI 1249 (1527)
Q Consensus 1180 ~~~v~~a~--AGdIvai~gl~~~~iGdTi~~~~~~~--------~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l 1249 (1527)
..++++|. ||++|++.|++++.+||||+..+++. .+..+.+..+.+.+.+.+... | +.+.|
T Consensus 296 ~~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~------g---s~eal 366 (594)
T 1g7s_A 296 FQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTL------G---SLEAV 366 (594)
T ss_dssp EEECSEEESSEEEEEECSSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSH------H---HHHHH
T ss_pred ceEccEEcCCCCcEEEEcccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCC------C---CHHHH
Confidence 78899998 99999999999999999999876541 112223445666777765432 2 45788
Q ss_pred HHHHHHHHh------------cCCceE---EEecCCCCCeEEEEecchhHHHHHHHHH-HhcCcEEEEecCeeeEEEe
Q psy1758 1250 KNRLDHEIK------------NNIGLR---VTQNKHDDSIYEVSGRGELHLTILIENM-RREGYELSVSRPRVIFKTL 1311 (1527)
Q Consensus 1250 ~~~L~~~~~------------~d~sl~---v~~~~~~~~g~~v~g~GelhL~vl~e~l-rreg~ev~vs~P~V~yre~ 1311 (1527)
.+.|.++.. +|+.+- .+.+ .... .++++-=..+-+ .+++ +++|+++.. +.|+|+-+
T Consensus 367 ~~~l~~~~~~v~~~~vg~i~~~dv~~a~~~~~~~-~~~a-~i~~fnv~~~~~--~~~~a~~~~v~i~~--~~iiy~l~ 438 (594)
T 1g7s_A 367 VKILRDMYVPIKVADIGDVSRRDVVNAGIALQED-RVYG-AIIAFNVKVIPS--AAQELKNSDIKLFQ--GNVIYRLM 438 (594)
T ss_dssp HHHHHHTTCCCSEEEESSBCHHHHHHHHHHHTTC-TTSC-EEEEESCCBCHH--HHHHTSSSSSEEEE--ESCHHHHH
T ss_pred HHHHHhCCCcEEecccCCCCHHHHHHHHhhhccC-cCCC-EEEEeCCcCCHH--HHHHHHHcCCeEEE--CCHHHHHH
Confidence 888888611 111110 0001 1133 555554455555 2344 356887766 68888753
No 39
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.97 E-value=1.5e-30 Score=317.61 Aligned_cols=272 Identities=24% Similarity=0.253 Sum_probs=207.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-----cCeEEEEEeCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-----NGTRINIIDTPG 994 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-----~~~~iniiDTPG 994 (1527)
....+|+++||+|||||||+++|+...... ..+............+..++++.......+.+ ..+.++||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 445799999999999999999998642111 11111112222233344566655443222222 237899999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCC-ccEEEEeccCCCCCC-hhhhHHHHHHHHhhhccc
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGF-KPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~gl-p~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~ 1071 (1527)
|.+|..++.++++.+|++|||+||++|. ++||++++..+..++. |+++|+||+|+.+.+ ..+..+++.+.+....
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~-- 162 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW-- 162 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTST--
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhC--
Confidence 9999999999999999999999999997 9999999999998887 678899999997643 2334444444333221
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeee--------ccccCceEEEEEe
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE--------YSSYLGKIGIGRI 1143 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~--------~d~~~G~v~~grV 1143 (1527)
...+|++++||++|. |+++|+++|.+.+|.|..+.+.||+++|.+++ ++++.|.+++|+|
T Consensus 163 --~~~~~ii~vSA~~g~----------gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v 230 (403)
T 3sjy_A 163 --AENVPIIPVSALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSI 230 (403)
T ss_dssp --TTTCCEEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEE
T ss_pred --CCCCEEEEEECCCCc----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEE
Confidence 225789999999998 99999999999999998888999999998765 4667999999999
Q ss_pred ecCccccCCEEEEecCCCCC----------cCcceeeeEEEeecCceeEeeeeecCCEEEEe-----cc--eecccCCee
Q psy1758 1144 LSGRIKSLQDVVIMNGPDDK----------PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-----GI--EEICIGSTI 1206 (1527)
Q Consensus 1144 ~sG~lk~Gd~v~~~~~~~g~----------~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~-----gl--~~~~iGdTi 1206 (1527)
.+|++++||+|.+.|. +. ....+|.+|+.+ +.++++|.|||+|++. ++ +++..||++
T Consensus 231 ~~G~~~~gd~v~~~p~--~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl 304 (403)
T 3sjy_A 231 IQGLFKVDQEIKVLPG--LRVEKQGKVSYEPIFTKISSIRFG----DEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSII 304 (403)
T ss_dssp EESCEETTCEEEEEEE--EEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEEESSCHHHHGGGTTTTCEE
T ss_pred EeCEEecCCEEEEeCC--cccccccccccccccEEEEEEEEC----CEEcCEEeCCCEEEEEeccccccchhhhccccEE
Confidence 9999999999999875 21 013588888764 4789999999999884 33 367889999
Q ss_pred eCCCCC
Q psy1758 1207 CDPSKP 1212 (1527)
Q Consensus 1207 ~~~~~~ 1212 (1527)
|+++.+
T Consensus 305 ~~~~~~ 310 (403)
T 3sjy_A 305 TLADAE 310 (403)
T ss_dssp EETTCC
T ss_pred eCCCCC
Confidence 987653
No 40
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.97 E-value=2.2e-31 Score=328.22 Aligned_cols=254 Identities=25% Similarity=0.247 Sum_probs=206.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+.++|+++||+|||||||+++|+... + .....+|+|++.....+.++++.++|||||||.+|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~--v--------------~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK--V--------------ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH--H--------------SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC--C--------------ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH
Confidence 45789999999999999999997531 0 0122478999888888889999999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+.++++.+|++|||||+++|+++||.++|..+...++|+|+|+||+|+++++++++..++.+. .+........+|++
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~--~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQY--GILPEEWGGESQFV 144 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCC--CCCTTCCSSSCEEE
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHh--hhhHHHhCCCccEE
Confidence 9999999999999999999999999999999999999999999999999887655443332110 00011111247999
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhh--cCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEec
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKY--VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 1158 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~--lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~ 1158 (1527)
++||++|. |+++|++++... ++.+..+++.|++++|++++.+++.|.+++++|.+|+|++||.|.+.+
T Consensus 145 ~vSAktG~----------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~ 214 (501)
T 1zo1_I 145 HVSAKAGT----------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF 214 (501)
T ss_dssp ECCTTTCT----------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB
T ss_pred EEeeeecc----------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc
Confidence 99999998 999999999865 344455678899999999999999999999999999999999998753
Q ss_pred CCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec-ccCCeeeCCCC
Q psy1758 1159 GPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSK 1211 (1527)
Q Consensus 1159 ~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~iGdTi~~~~~ 1211 (1527)
. ..+|..|+...| .++++|.||+.|.+.|++++ ..||+++...+
T Consensus 215 ~------~~kVr~i~~~~g---~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~ 259 (501)
T 1zo1_I 215 E------YGRVRAMRNELG---QEVLEAGPSIPVEILGLSGVPAAGDEVTVVRD 259 (501)
T ss_dssp S------SCEEEEECCTTT---TSEEEECCSSCSSSEEECSCCCTTEEEEEECS
T ss_pred c------eeEEEEEEecCC---CcCcEeccCCcEEEeCCCCCCCCCCEEEecCC
Confidence 3 346776654433 57899999999999999874 78999986543
No 41
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.97 E-value=7.7e-32 Score=334.98 Aligned_cols=254 Identities=27% Similarity=0.316 Sum_probs=211.5
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCCchH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~df~~ 1000 (1527)
.++|+++||+|||||||+++|++.. ...+..+|+|.+.....+.+ ++.+++|||||||.+|..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~----------------~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~ 67 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQ----------------VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA 67 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHH----------------HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----------------cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH
Confidence 4579999999999999999997541 11223568888877777777 577899999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+.++++.+|++|||+|+++|+++||.++|..+...++|+|+|+||+|+++++++.+..++...- +.......++|++
T Consensus 68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~--~~~e~~~~~~~iv 145 (537)
T 3izy_P 68 MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYD--VVCEDYGGDVQAV 145 (537)
T ss_dssp SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTT--SCCCCSSSSEEEC
T ss_pred HHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhh--hhHHhcCCCceEE
Confidence 99999999999999999999999999999999999999999999999998877665555554321 1112222357899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcC--CCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEec
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVP--VHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 1158 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp--~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~ 1158 (1527)
++||++|. |+++|++++...++ .|..+++.|+++.|++++++++.|++++|+|.+|+|++||.+..
T Consensus 146 ~vSAktG~----------GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~-- 213 (537)
T 3izy_P 146 HVSALTGE----------NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVA-- 213 (537)
T ss_dssp CCCSSSSC----------SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECC--
T ss_pred EEECCCCC----------CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEe--
Confidence 99999998 99999999988754 44556789999999999999999999999999999999998742
Q ss_pred CCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec-ccCCeeeCCCCC
Q psy1758 1159 GPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSKP 1212 (1527)
Q Consensus 1159 ~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~iGdTi~~~~~~ 1212 (1527)
| ....+|..|+.+.| .++++|.|||+|+|+|++++ ..||+|+..+++
T Consensus 214 ---g-~~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 214 ---G-KSWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp ---S-SCCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred ---C-CceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 2 13468888887765 57999999999999999985 789999987654
No 42
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=99.95 E-value=3.4e-31 Score=264.42 Aligned_cols=135 Identities=40% Similarity=0.639 Sum_probs=121.5
Q ss_pred ChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeecc
Q psy1758 324 NEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAV 403 (1527)
Q Consensus 324 ~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~v 403 (1527)
||.+|++++++|+. ++.++++.....+++++.++.+++.+.+|+|||||++||+|||.++|.++++++|+++|++++|
T Consensus 1 ~~~ea~~ia~~R~~--r~~~~~~~~~~~Le~l~~~i~~~~~k~l~vIiKaDv~GSlEAl~~~L~~l~~~ev~i~Ii~~gV 78 (135)
T 1z9b_A 1 NEFELGTRGSSRVD--LQEQRSVKTRVSLDDLFEQIKQGEMKELNLIVKADVQGSVEALVAALQKIDVEGVRVKIIHAAV 78 (135)
T ss_dssp CCSCCCCCTTTTSC--CCSCSSCSSCCSCCCCCCCCCCCSSCEEEEEEEESSHHHHHHHHHHHTTCCCSSCEEEEEEEEE
T ss_pred CchhHHHHHHHHHH--HHHHHHhhccCCHHHHHHHHhccCcccCCEEEEeCCcchHHHHHHHHHhcCCCceEEEEEeecC
Confidence 46678888888876 3333444445678889888888889999999999999999999999999999999999999999
Q ss_pred CcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHH
Q psy1758 404 GNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEI 460 (1527)
Q Consensus 404 G~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~ 460 (1527)
|+||++||.+|++++|+||||||+++++++++|++.||+|++|||||+|+||+++.|
T Consensus 79 G~ItesDV~lA~as~aiIigFNV~~~~~a~~~A~~~gV~I~~~~IIY~liddv~~~m 135 (135)
T 1z9b_A 79 GAITESDISLATASNAIVIGFNVRPDANAKRAAESEKVDIRLHRIIYNVIEEIEAAM 135 (135)
T ss_dssp SCBCHHHHHHHHHHTCEEEESSCCBCTTHHHHHHTTTCCCEECTTCCCCSCCCSCC-
T ss_pred CCCCHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999987654
No 43
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.95 E-value=2.2e-27 Score=291.87 Aligned_cols=250 Identities=25% Similarity=0.332 Sum_probs=194.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-------------------------------cccccCCceeEEEEEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-------------------------------VVFSEAGGITQHIGAYNVVTNH 115 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-------------------------------~~~~~~~giT~~~~~~~~~~~~ 115 (1527)
....+|+++||+|||||||+++|.... ......+|+|++.....+.+++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 345789999999999999999995432 1122346899999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEEcccCCcchhH-
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM-------PQTREAIAHAKISGVP-LIVAINKIDKLDINLD- 186 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~-------~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~- 186 (1527)
..++|||||||++|...+..+++.+|++|||+|++++.. +|+.+++..+...++| +|+|+||+|+...+..
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence 999999999999999999999999999999999999876 7999999999999999 9999999999653221
Q ss_pred ----HHHHHHhhhcccccccC----CCCcEEEeeccCCCChhHHHHH--------HHHH-HHHHhhcCCCCCCCceEEEE
Q psy1758 187 ----RIKQDLISEQVIPEEYG----GASPFISISAKTGVGINKLLEN--------ISLQ-AEILELKAPVTTPAKGVIIE 249 (1527)
Q Consensus 187 ----~~~~~l~~~~~~~~~~~----~~~~v~~iSAktg~gI~eL~~~--------l~~~-~~~~~~~~~~~~p~~~~v~~ 249 (1527)
....++.. ....++ ..++++++||++|.|++++++. |... ........+.+.|++..|.+
T Consensus 175 ~~~~~i~~~~~~---~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~ 251 (439)
T 3j2k_7 175 ERYEECKEKLVP---FLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVD 251 (439)
T ss_pred HHHHHHHHHHHH---HHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEEEEEE
Confidence 11122111 111111 2468999999999999997662 2221 12222233456788888888
Q ss_pred EeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcceE--ecCCCCCC-CCCCeEEEe
Q psy1758 250 SRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPVE--IQGLTKVP-FSGEELFVI 322 (1527)
Q Consensus 250 ~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v~--I~gl~~~~-~~G~~~~~~ 322 (1527)
.+. +.|++++++|.+|+|++||.|++++. ..+|++|+. ++.++.+|.||+.|. +.|++... .+|+++..-
T Consensus 252 ~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~ 326 (439)
T 3j2k_7 252 KYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS-DDTETDFVAPGENLKIRLKGIEEEEILPGFILCDP 326 (439)
T ss_pred EEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE-CCeEcCEecCCCcceEEEeccchhhcCCcEEecCC
Confidence 865 68999999999999999999998764 579999976 456899999998887 66777655 689877643
No 44
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.95 E-value=6.1e-27 Score=288.59 Aligned_cols=149 Identities=19% Similarity=0.370 Sum_probs=108.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh--------hHHHHHHhhccc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE--------AFTAMRARGAKV 139 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e--------~f~~~~~~~~~~ 139 (1527)
.++|+++|++|||||||+|+|.+..+ .....+|+|++.....+.+.+..+.+|||||++ .|...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 37899999999999999999998775 467788999999998888889999999999985 677788889999
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
||++|+|+|+.++......+....++..+.|+++|+||+|+..... . ..... .++ ..+++++||++|.|+
T Consensus 83 ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~-----~--~~~~~--~lg-~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA-----N--IYDFY--SLG-FGEPYPISGTHGLGL 152 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC----------C--CCSSG--GGS-SCCCEECBTTTTBTH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh-----h--HHHHH--HcC-CCCeEEEeCcCCCCh
Confidence 9999999999999988888777778888999999999999865210 0 01111 122 226899999999999
Q ss_pred hHHHHHHH
Q psy1758 220 NKLLENIS 227 (1527)
Q Consensus 220 ~eL~~~l~ 227 (1527)
++|++.+.
T Consensus 153 ~~L~~~i~ 160 (436)
T 2hjg_A 153 GDLLDAVA 160 (436)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
No 45
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.95 E-value=3.2e-27 Score=297.13 Aligned_cols=335 Identities=23% Similarity=0.270 Sum_probs=243.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc---------------ccccCCceeEEEEEEEEEeC-----CeEEEEEeCCChhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV---------------VFSEAGGITQHIGAYNVVTN-----HGSITFLDTPGHEA 128 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~---------------~~~~~~giT~~~~~~~~~~~-----~~~i~~iDTPG~e~ 128 (1527)
-++|+++||+|||||||+++|..... ......|+|+......+.|. ...++|||||||++
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 45899999999999999999976321 11123567776655555554 25899999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcE
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
|...+.++++.+|++|+|+|+++++..|+.++|..+...++|+|+|+||+|+..++..+...++...... ...++
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~-----~~~~v 160 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGL-----DPEEA 160 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCC-----CGGGC
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCC-----CcccE
Confidence 9999999999999999999999999999999999999999999999999999887766555554433211 11368
Q ss_pred EEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeE
Q psy1758 209 ISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRS 286 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~ 286 (1527)
+++||++|.|+++|+++|... ...+..+.+.|+.++|+++..+++.|.+++++|.+|+|++||.|.+.++ ..+|..
T Consensus 161 i~vSAktg~GI~~Lle~I~~~--lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~ 238 (600)
T 2ywe_A 161 ILASAKEGIGIEEILEAIVNR--IPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTE 238 (600)
T ss_dssp EECBTTTTBSHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCE
T ss_pred EEEEeecCCCchHHHHHHHHh--cccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeec
Confidence 999999999999999999744 2233334567899999999999999999999999999999999988543 346666
Q ss_pred eecc--CCceeeecCCCcceEe-cCCCCCC--CCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhcc
Q psy1758 287 MLNE--NGKNILEAGPSIPVEI-QGLTKVP--FSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINK 361 (1527)
Q Consensus 287 i~~~--~g~~v~~a~~~~~v~I-~gl~~~~--~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1527)
+... +..++.++.+|+.+.+ .|++++. ..||.+....+... ..+.. + +
T Consensus 239 i~~~~~~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~----------------------~~l~~----~-~ 291 (600)
T 2ywe_A 239 VGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTK----------------------EPVPG----F-Q 291 (600)
T ss_dssp EEEESSSEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCS----------------------SCCSC----C-C
T ss_pred ccccCCCceECCEEecCceeeeeccccchhhccCCCEEEeCCCccc----------------------cccCC----C-C
Confidence 6543 3456888999998877 4776543 78998875443200 00000 0 1
Q ss_pred ccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhH------HHH
Q psy1758 362 EKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADAST------RKL 435 (1527)
Q Consensus 362 ~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~------~~~ 435 (1527)
.....+...+.....+..+.+.++|.++..+...+.+-. .++.+++.||.+...-.. ..+
T Consensus 292 ~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~~--------------et~~~l~~g~~~~~~G~lHlei~~erl 357 (600)
T 2ywe_A 292 PAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEP--------------ESSPALGMGFRVGFLGLLHMEIVQERL 357 (600)
T ss_dssp CCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEEE--------------EEETTTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEEE--------------CCccccccceEEEeccHHHHHHHHHHH
Confidence 123456677888888999999999999987777776641 345567778777655432 344
Q ss_pred HHhCCCeEEEee--hHHH
Q psy1758 436 AQINNINIRYHN--IIYN 451 (1527)
Q Consensus 436 a~~~~V~i~~~~--iIY~ 451 (1527)
.++.|+++.... |+|+
T Consensus 358 ~re~~~~v~~~~P~V~yr 375 (600)
T 2ywe_A 358 EREYGVKIITTAPNVIYR 375 (600)
T ss_dssp HHHSCCCEEECCCEECEE
T ss_pred HhhcCceEEEEeeeEEEE
Confidence 455688887766 7776
No 46
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.95 E-value=9.5e-27 Score=283.26 Aligned_cols=248 Identities=27% Similarity=0.287 Sum_probs=193.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc-------c---------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN-------V---------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~-------~---------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
..+|+++||+|||||||+++|++.. + ......|+|++.....+.+.+..++|||||||++|..+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 3589999999999999999998641 1 01225689999888888888889999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch--hHHHHHHHhhhccccccc-CCCCcE
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDIN--LDRIKQDLISEQVIPEEY-GGASPF 208 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~-~~~~~v 208 (1527)
+.++++.+|++|+|+|++++..+|+.+++..+...++| +++|+||+|+.+.. .+....++..... ...+ ...+|+
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 161 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT-EFGYKGEETPI 161 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH-HTTSCTTTSCE
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH-HcCCCcccCcE
Confidence 99999999999999999999999999999999889999 78999999997521 1111111111100 0011 124799
Q ss_pred EEeeccCCCC----------hhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEec
Q psy1758 209 ISISAKTGVG----------INKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAG 278 (1527)
Q Consensus 209 ~~iSAktg~g----------I~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g 278 (1527)
+++||++|.| +++|++.|... +.....+.+.|+...|.+++.+++.|+|++++|.+|+|++||.|.+.
T Consensus 162 i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~--~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 162 IVGSALCALEQRDPELGLKSVQKLLDAVDTY--IPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp EECCHHHHHTTCCTTTTHHHHHHHHHHHHHH--SCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred EEeehhhcccccCCCccCCcHHHHHHHHHHh--CCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEe
Confidence 9999999875 88888888643 22233345678899999999999999999999999999999999753
Q ss_pred c----eeeeEeEeeccCCceeeecCCCcceEec--CCCCCC-CCCCeEE
Q psy1758 279 A----SYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVP-FSGEELF 320 (1527)
Q Consensus 279 ~----~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~-~~G~~~~ 320 (1527)
+ ...+|++|... ++++.+|.||+.+.+. |++... .+|+++.
T Consensus 240 ~~~~~~~~~V~~i~~~-~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~ 287 (397)
T 1d2e_A 240 GHSKNIRTVVTGIEMF-HKSLDRAEAGDNLGALVRGLKREDLRRGLVMA 287 (397)
T ss_dssp ETTEEEEEEEEEEEET-TEEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred CCCCCeEEEEEEEEEC-CcccCEecCCCceEEEecccchhccCceeEEe
Confidence 3 56799999654 5789999999987665 665332 7899776
No 47
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.95 E-value=1.4e-27 Score=296.77 Aligned_cols=252 Identities=27% Similarity=0.332 Sum_probs=194.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKV 139 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~ 139 (1527)
.+.++|+++||+|||||||+++|++.. ......+|+|++.....+.+++..++|||||||++|...+.++++.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 356799999999999999999999876 3456677999999888888899999999999999999999999999
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|++|+|+|++++..+|+.+++..+...++|+|+|+||+|+.+.+ .+....++.........+ ...+++++||++|.|
T Consensus 97 aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~vSA~~g~g 175 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL-KNSSIIPISAKTGFG 175 (482)
T ss_dssp CCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG-GGCCEEECCTTTCTT
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc-ccceEEEEECcCCCC
Confidence 999999999999999999999999999999999999999998632 222222222111000011 136899999999999
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceee
Q psy1758 219 INKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNIL 296 (1527)
Q Consensus 219 I~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~ 296 (1527)
+++|++.|...........+.+.|+...+.+++..++.|+|++++|.+|+|++||.+.+.+ ...+|++|..+ ++.+.
T Consensus 176 I~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~~~v~ 254 (482)
T 1wb1_A 176 VDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYF-KESVM 254 (482)
T ss_dssp HHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGG-GSCBC
T ss_pred HHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEEC-CeEee
Confidence 9999999987654332244556688888888999999999999999999999999998864 35799999764 56789
Q ss_pred ecCCCcceEe--cCCCCC-CCCCCeEE
Q psy1758 297 EAGPSIPVEI--QGLTKV-PFSGEELF 320 (1527)
Q Consensus 297 ~a~~~~~v~I--~gl~~~-~~~G~~~~ 320 (1527)
+|.||+.+.+ .|++.. ..+|+++.
T Consensus 255 ~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 255 EAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp CCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EecCCCEEEEEecCCCHhhccccceEe
Confidence 9999987765 476543 37899773
No 48
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.94 E-value=1.6e-26 Score=291.49 Aligned_cols=335 Identities=22% Similarity=0.251 Sum_probs=235.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc---------------ccccCCceeEEEEEEEEEeC-----CeEEEEEeCCChhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV---------------VFSEAGGITQHIGAYNVVTN-----HGSITFLDTPGHEA 128 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~---------------~~~~~~giT~~~~~~~~~~~-----~~~i~~iDTPG~e~ 128 (1527)
-.+|+|+||+|||||||+++|..... ......|+|+......+.|. +..++|||||||++
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 35799999999999999999976321 11224578888777777665 25899999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcE
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
|..++.++++.+|++|+|+|+++++..|+.+.|..+...++|+++|+||+|+.+++..+...++...... ...++
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~-----~~~~v 158 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGI-----DATDA 158 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCC-----CCTTC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCC-----CcceE
Confidence 9999999999999999999999999999999999999999999999999999887766555555433211 11368
Q ss_pred EEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeE
Q psy1758 209 ISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRS 286 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~ 286 (1527)
+++||++|.|+++|+++|... ...+..+.+.|+.++|+++..+++.|.++++++.+|+|++||.+.+.++ ..+|..
T Consensus 159 i~vSAktg~GI~~Ll~~I~~~--lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~ 236 (599)
T 3cb4_D 159 VRCSAKTGVGVQDVLERLVRD--IPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADR 236 (599)
T ss_dssp EEECTTTCTTHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCE
T ss_pred EEeecccCCCchhHHHHHhhc--CCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEee
Confidence 999999999999999999754 2233344567899999999999999999999999999999999987543 446666
Q ss_pred eecc--CCceeeecCCCcceEe-cCCCCCC--CCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhcc
Q psy1758 287 MLNE--NGKNILEAGPSIPVEI-QGLTKVP--FSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINK 361 (1527)
Q Consensus 287 i~~~--~g~~v~~a~~~~~v~I-~gl~~~~--~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1527)
+... +...+.++.+|+.+.+ .|++++. ..||.+....+.. . ..+.. +.
T Consensus 237 i~~~~~~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~--~--------------------~~l~~----~~- 289 (599)
T 3cb4_D 237 LGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPA--E--------------------KALPG----FK- 289 (599)
T ss_dssp EEEESSSEEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCC--S--------------------SCCTT----CC-
T ss_pred eeeccCCceECCEEcCCCeeEeeccccccccCccCCEeeecCCcc--c--------------------ccccc----cc-
Confidence 5443 3456788999998877 4766443 7899888544320 0 00000 00
Q ss_pred ccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhH------HHH
Q psy1758 362 EKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADAST------RKL 435 (1527)
Q Consensus 362 ~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~------~~~ 435 (1527)
.....+...+.....+..+.+.++|.++..+...+.+- ..++.+++.+|.+...-.. ..+
T Consensus 290 ~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--------------~et~~~l~~gfr~g~lG~lhlei~~erl 355 (599)
T 3cb4_D 290 KVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--------------PESSSALGFGFRCGFLGLLHMEIIQERL 355 (599)
T ss_dssp CCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--------------EEEETTTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--------------eccccccccceEEEeccHHHHHHHHHHH
Confidence 11234555566666778999999999997777666653 2345677888887765442 233
Q ss_pred HHhCCCeEEEee--hHHH
Q psy1758 436 AQINNINIRYHN--IIYN 451 (1527)
Q Consensus 436 a~~~~V~i~~~~--iIY~ 451 (1527)
.++.|+++.... |+|+
T Consensus 356 ~~e~~~~~~~~~P~V~yr 373 (599)
T 3cb4_D 356 EREYDLDLITTAPTVVYE 373 (599)
T ss_dssp HHTSCCCEEECCCEECEE
T ss_pred HHHcCceEEEEeeeEEEE
Confidence 334466666554 5553
No 49
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.94 E-value=7.9e-27 Score=293.22 Aligned_cols=294 Identities=20% Similarity=0.229 Sum_probs=214.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc----------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTP 124 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTP 124 (1527)
.|..+|+|+||+|||||||+++|..... ......|||+......+.|++++++|+|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 3567899999999999999999852211 223446899999999999999999999999
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc---c--
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI---P-- 199 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~---~-- 199 (1527)
||.+|...+.++++.+|++|+|+||.+|+++||...|+++...++|+++++||+|+..++..+...++...... +
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~ 188 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMT 188 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeEE
Confidence 99999999999999999999999999999999999999999999999999999999998877766655432100 0
Q ss_pred ------------------------------------------------------------------------c--ccCCC
Q psy1758 200 ------------------------------------------------------------------------E--EYGGA 205 (1527)
Q Consensus 200 ------------------------------------------------------------------------~--~~~~~ 205 (1527)
+ ..+..
T Consensus 189 ~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~ 268 (548)
T 3vqt_A 189 WPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGEL 268 (548)
T ss_dssp EEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSE
T ss_pred eeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCc
Confidence 0 01234
Q ss_pred CcEEEeeccCCCChhHHHHHHHHHHHHHhh-------cCCCCCCCceEEEEEeec---CCCceEEEEEeeccEEEeccEE
Q psy1758 206 SPFISISAKTGVGINKLLENISLQAEILEL-------KAPVTTPAKGVIIESRLD---KGKGPVATVLIQSGTLRCSDIV 275 (1527)
Q Consensus 206 ~~v~~iSAktg~gI~eL~~~l~~~~~~~~~-------~~~~~~p~~~~v~~~~~~---~~~G~v~~~~v~~G~l~~gd~v 275 (1527)
+|+++.||++|.||+.|++.+......+.. ..+.+.|+.++|++...+ +..|.+++++|++|+|+.|+.|
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v 348 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRL 348 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEETTCEE
T ss_pred ceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEE
Confidence 689999999999999999999754211000 012356888999998876 7899999999999999999999
Q ss_pred Eecce--eeeEeEeecc---CCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhh
Q psy1758 276 VAGAS--YGRIRSMLNE---NGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLH 350 (1527)
Q Consensus 276 v~g~~--~~kVr~i~~~---~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 350 (1527)
.+..+ ..||..++.. ...++.++.+|+.+.|.|++.. ..||.+..-.+..
T Consensus 349 ~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GDTl~~~~~~~------------------------ 403 (548)
T 3vqt_A 349 KHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI-KIGDTFTESKEVL------------------------ 403 (548)
T ss_dssp EETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCC-CTTCEEESSSSCC------------------------
T ss_pred EeeccccccccchhhhhccccccccCEEecCCEEEecCCccC-ccCCEecCCCCcc------------------------
Confidence 87432 3455555444 4466889999999999999886 7899776221100
Q ss_pred hhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcC
Q psy1758 351 KTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLS 390 (1527)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~ 390 (1527)
.+.. + ....+.+.+-|.+...+..+.+.++|.++.
T Consensus 404 ~~~~----i-~~~~P~~~~av~p~~~~d~~kl~~~L~~L~ 438 (548)
T 3vqt_A 404 KFVG----I-PNFAPEHFRRVRLKNPLKAKQLQKGLEQLA 438 (548)
T ss_dssp CBCC----C-EEECCSEEEEEEESCGGGHHHHHHHHHHHH
T ss_pred ccCC----C-CCCCCcceeeeeeCCchhHHHHHHHHHHhh
Confidence 0000 0 001133455567777777888888887774
No 50
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.94 E-value=1.2e-26 Score=283.50 Aligned_cols=249 Identities=30% Similarity=0.350 Sum_probs=193.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc--------ccc---------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT--------NVV---------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~--------~~~---------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
...+|+++||+|||||||+++|++. .+. .....|+|++.....+.+.+..++|||||||++|.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 4478999999999999999999873 111 11245888888777888888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcc-h-hHHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDI-N-LDRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~-~-~~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+.++++.+|++|+|+|++++..+|+.+++..+...++| +++|+||+|+.+. . .+....++..... ...+ ....
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 168 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN-QYEFPGDEV 168 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH-HTTSCTTTS
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHH-HhcccccCC
Confidence 9999999999999999999999999999999999999999 8999999999752 1 1111111111100 0011 1246
Q ss_pred cEEEeeccCCCC------------------hhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccE
Q psy1758 207 PFISISAKTGVG------------------INKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268 (1527)
Q Consensus 207 ~v~~iSAktg~g------------------I~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~ 268 (1527)
|++++||++|.| +++|++.|... ......+.+.|++..|.+++.+++.|+|++++|.+|+
T Consensus 169 ~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~--lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~ 246 (405)
T 2c78_A 169 PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEY--IPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246 (405)
T ss_dssp CEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHH--SCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBSE
T ss_pred CEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhh--cCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEeccc
Confidence 999999999987 67777776432 1222334567889999999999999999999999999
Q ss_pred EEeccEEEecc-----eeeeEeEeeccCCceeeecCCCcceEec--CCCCCC-CCCCeEE
Q psy1758 269 LRCSDIVVAGA-----SYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVP-FSGEELF 320 (1527)
Q Consensus 269 l~~gd~vv~g~-----~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~-~~G~~~~ 320 (1527)
|++||.|.+.+ ...+|++|.. .++++.+|.||+.+.+. |++... .+|+++.
T Consensus 247 l~~gd~v~~~~~~~~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~ 305 (405)
T 2c78_A 247 VKVGDEVEIVGLAPETRKTVVTGVEM-HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLA 305 (405)
T ss_dssp EETTCEEEEESSSSSCEEEEEEEEEE-TTEEESEEETTCEEEEEESSCCTTTCCTTCEEE
T ss_pred ccCCCEEEEeCCCCCeeeEEEEEEEE-CCcccCEEcCCCEEEEEECCCcHhhcCceEEEE
Confidence 99999997644 3579999965 45789999999987665 664333 7899876
No 51
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.94 E-value=2.9e-26 Score=275.28 Aligned_cols=237 Identities=22% Similarity=0.207 Sum_probs=189.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++||+|||||||+++|. ..|+|++.....+.+++.+++|||||||++|...+.++++.+|++|+|+| +
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~ 93 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P 93 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence 89999999999999999998 45788888888888888999999999999999999999999999999999 9
Q ss_pred CCCcHHHHHHHHHHHHcCCCE-EEEEE-cccCCcchh-HHHHHHHhhhcccccccC-CCCcEEE--eeccC---CCChhH
Q psy1758 151 DGVMPQTREAIAHAKISGVPL-IVAIN-KIDKLDINL-DRIKQDLISEQVIPEEYG-GASPFIS--ISAKT---GVGINK 221 (1527)
Q Consensus 151 ~g~~~qt~e~i~~~~~~~vpi-IvviN-KiDl~~~~~-~~~~~~l~~~~~~~~~~~-~~~~v~~--iSAkt---g~gI~e 221 (1527)
++..+|+.+++..+...++|. |+++| |+|+ +.+. +....++.... ..++ ..+|+++ +||++ |.|+++
T Consensus 94 ~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l---~~~~~~~~~ii~~~~SA~~~~~g~gi~~ 169 (370)
T 2elf_A 94 QGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVIT---SGTVLQDWECISLNTNKSAKNPFEGVDE 169 (370)
T ss_dssp TCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT---TTSTTTTCEEEECCCCTTSSSTTTTHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH---HhcCCCceEEEecccccccCcCCCCHHH
Confidence 999999999999999999997 99999 9999 5332 22222222111 1111 3469999 99999 999999
Q ss_pred HHHHHHHHHHHH-hhcCC-CCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeee
Q psy1758 222 LLENISLQAEIL-ELKAP-VTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILE 297 (1527)
Q Consensus 222 L~~~l~~~~~~~-~~~~~-~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~ 297 (1527)
|++.|....... +...+ ...|++.++.+++..++.|++++++|.+|+|++||.|++.+ ...+|++|.. .++++.+
T Consensus 170 L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~~~~v~~ 248 (370)
T 2elf_A 170 LKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQS-HDVDIDS 248 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEE-TTEEESE
T ss_pred HHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEE-CCCCccE
Confidence 999998654322 11112 34456777999999999999999999999999999998865 5689999965 4688999
Q ss_pred cCCCcceEec--CCCCC-CCCCCeEEE
Q psy1758 298 AGPSIPVEIQ--GLTKV-PFSGEELFV 321 (1527)
Q Consensus 298 a~~~~~v~I~--gl~~~-~~~G~~~~~ 321 (1527)
|.||+.+.+. |++.. ..+|+++..
T Consensus 249 a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 249 APAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp EETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred EcCCCcceEEEeccCHHHcCCceEEEC
Confidence 9999988776 65432 279998874
No 52
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.94 E-value=9.1e-26 Score=276.04 Aligned_cols=247 Identities=30% Similarity=0.338 Sum_probs=187.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEeC-----------------------CeEEEEEe
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVTN-----------------------HGSITFLD 122 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~~-----------------------~~~i~~iD 122 (1527)
..+|+++||+|||||||+++|++.. +.....+|+|++.......+. ...++|||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 3689999999999999999998543 344556788887765544331 15799999
Q ss_pred CCChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhH-HHHHHHhhhcccc
Q psy1758 123 TPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGV-PLIVAINKIDKLDINLD-RIKQDLISEQVIP 199 (1527)
Q Consensus 123 TPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~-~~~~~l~~~~~~~ 199 (1527)
||||++|..++.+++..+|++|+|+|++++. .+|+.+++..+...++ |+++|+||+|+.+.+.. ....++... ..
T Consensus 90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~--l~ 167 (410)
T 1kk1_A 90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEF--IE 167 (410)
T ss_dssp CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH--HT
T ss_pred CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHH--HH
Confidence 9999999999999999999999999999997 8999999988887776 69999999999874321 112222111 11
Q ss_pred cccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeec--------CCCceEEEEEeeccEEEe
Q psy1758 200 EEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLD--------KGKGPVATVLIQSGTLRC 271 (1527)
Q Consensus 200 ~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~--------~~~G~v~~~~v~~G~l~~ 271 (1527)
..+...++++++||++|.|+++|+++|... ......+.+.|++..|.+++.. +.+|+|++++|.+|+|++
T Consensus 168 ~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~--~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~ 245 (410)
T 1kk1_A 168 GTVAENAPIIPISALHGANIDVLVKAIEDF--IPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKV 245 (410)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEET
T ss_pred hcCcCCCeEEEeeCCCCCCHHHHHHHHHHh--CCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEee
Confidence 112235799999999999999999999643 2223334567888889888754 457899999999999999
Q ss_pred ccEEEecce--------------eeeEeEeeccCCceeeecCCCcceEecC-----CC-CCCCCCCeEE
Q psy1758 272 SDIVVAGAS--------------YGRIRSMLNENGKNILEAGPSIPVEIQG-----LT-KVPFSGEELF 320 (1527)
Q Consensus 272 gd~vv~g~~--------------~~kVr~i~~~~g~~v~~a~~~~~v~I~g-----l~-~~~~~G~~~~ 320 (1527)
||.|.+.+. ..+|++|+. +++++.+|.||+.+.+.. +. .-..+|+++.
T Consensus 246 gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~-~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~ 313 (410)
T 1kk1_A 246 GDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA-GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG 313 (410)
T ss_dssp TCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE-TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEE
T ss_pred CCEEEECCCCccccccccccccceeEEEEEEE-CCeEecEEcCCCEEEEEEecCcccchhhccceeEEe
Confidence 999987542 579999985 467899999999888752 21 1125787665
No 53
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.94 E-value=8.6e-26 Score=275.94 Aligned_cols=248 Identities=26% Similarity=0.316 Sum_probs=179.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEe---------------C--------CeEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVT---------------N--------HGSITFL 121 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~---------------~--------~~~i~~i 121 (1527)
...+|+++||+|||||||+++|++.. +.....+|+|++.......+ + ...++||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45789999999999999999998543 34445578888766544332 1 1579999
Q ss_pred eCCChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhH-HHHHHHhhhccc
Q psy1758 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGV-PLIVAINKIDKLDINLD-RIKQDLISEQVI 198 (1527)
Q Consensus 122 DTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~-~~~~~l~~~~~~ 198 (1527)
|||||++|..++.++++.+|++|+|+|++++. .+|+.+++..+...+. |+++|+||+|+.+.+.. ....++... .
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~--l 164 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEF--V 164 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHH--H
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHH--H
Confidence 99999999999999999999999999999997 8999999988887776 69999999999764321 111222111 1
Q ss_pred ccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecC--------CCceEEEEEeeccEEE
Q psy1758 199 PEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDK--------GKGPVATVLIQSGTLR 270 (1527)
Q Consensus 199 ~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~--------~~G~v~~~~v~~G~l~ 270 (1527)
...+...++++++||++|.|+++|+++|... +.....+.+.|++..|.+++..+ .+|+|++++|.+|+|+
T Consensus 165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~--i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~ 242 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHEANIDVLLKAIQDF--IPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFK 242 (408)
T ss_dssp TTSTTTTCCEEEC------CHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEE
T ss_pred hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHh--CCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEe
Confidence 1112335799999999999999999999743 22333455678899999887543 4789999999999999
Q ss_pred eccEEEecce--------------eeeEeEeeccCCceeeecCCCcceEecC-----CCCC-CCCCCeEE
Q psy1758 271 CSDIVVAGAS--------------YGRIRSMLNENGKNILEAGPSIPVEIQG-----LTKV-PFSGEELF 320 (1527)
Q Consensus 271 ~gd~vv~g~~--------------~~kVr~i~~~~g~~v~~a~~~~~v~I~g-----l~~~-~~~G~~~~ 320 (1527)
+||.|.+.+. ..+|++|+.. ++++.+|.||+.+.+.. +..- -.+|+++.
T Consensus 243 ~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~ 311 (408)
T 1s0u_A 243 VGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG-NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVG 311 (408)
T ss_dssp TTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET-TEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEE
T ss_pred cCCEEEEcCCcccccccccccccceeEEEEEEEC-CEEcCEEeCCCeEEEEeccCcccchhhccceeEEE
Confidence 9999988542 5799999775 57899999999998852 2211 15787664
No 54
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.94 E-value=4.7e-26 Score=284.04 Aligned_cols=253 Identities=21% Similarity=0.248 Sum_probs=190.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc-------------------------------cccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN-------------------------------VVFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~-------------------------------~~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+|+++|++|+|||||+++|.+.. ......+|+|++.....+.+.+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 45789999999999999999997551 11223458999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHH-
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDR- 187 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-------~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~- 187 (1527)
.++|||||||++|..++..+++.+|++|+|+|++++ ...|+.+++..+...++| +|+|+||+|+.+.+...
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~ 191 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 191 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHH
Confidence 999999999999999999999999999999999997 668999999999888865 99999999998643222
Q ss_pred --HHHHHhhhcccccccC---CCCcEEEeeccCCCChhH---------------HHHHHHHHHHH-Hh--hcCCCCCCCc
Q psy1758 188 --IKQDLISEQVIPEEYG---GASPFISISAKTGVGINK---------------LLENISLQAEI-LE--LKAPVTTPAK 244 (1527)
Q Consensus 188 --~~~~l~~~~~~~~~~~---~~~~v~~iSAktg~gI~e---------------L~~~l~~~~~~-~~--~~~~~~~p~~ 244 (1527)
....+... ...++ ..++++++||++|.|+++ |++.|...... .. ...+.+.|++
T Consensus 192 ~~i~~~~~~~---l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r 268 (483)
T 3p26_A 192 EEIKSKLLPY---LVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 268 (483)
T ss_dssp HHHHHHHHHH---HHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCE
T ss_pred HHHHHHHHHH---HHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceE
Confidence 22222111 11111 136899999999999985 33444332211 11 3345678999
Q ss_pred eEEEEEeecC---CCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccC-------CceeeecCCCcceEec--CCC
Q psy1758 245 GVIIESRLDK---GKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNEN-------GKNILEAGPSIPVEIQ--GLT 310 (1527)
Q Consensus 245 ~~v~~~~~~~---~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~-------g~~v~~a~~~~~v~I~--gl~ 310 (1527)
..|.+.+..+ +.|+|++++|.+|+|++||.|++++ ...+|++|...+ ...+.+|.||+.|.+. +..
T Consensus 269 ~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~ 348 (483)
T 3p26_A 269 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAY 348 (483)
T ss_dssp EEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCC
T ss_pred EEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecc
Confidence 9999998876 5899999999999999999999866 457999998775 5789999999988773 332
Q ss_pred CCC-CCCCeEEEeC
Q psy1758 311 KVP-FSGEELFVIL 323 (1527)
Q Consensus 311 ~~~-~~G~~~~~~~ 323 (1527)
... .+|+++....
T Consensus 349 ~~di~rG~vl~~~~ 362 (483)
T 3p26_A 349 PEDIQNGDLAASVD 362 (483)
T ss_dssp GGGCCTTCEEECTT
T ss_pred cccCCceEEEEcCC
Confidence 222 7899877433
No 55
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.94 E-value=8.2e-26 Score=278.24 Aligned_cols=252 Identities=23% Similarity=0.263 Sum_probs=191.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccc---------------------------------cccCCceeEEEEEEEEEeCC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVV---------------------------------FSEAGGITQHIGAYNVVTNH 115 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~---------------------------------~~~~~giT~~~~~~~~~~~~ 115 (1527)
..+|+++||+|||||||+++|.+.... .....|+|++.....+.+++
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 368999999999999999999754310 01124788888888888889
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHH---HHH
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRI---KQD 191 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~---~~~ 191 (1527)
.+++|||||||++|..++.++++.+|++|+|+|++++..+|+.+++..+...++| +|+|+||+|+.+.+.+.. ..+
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~ 183 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKAD 183 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988888886 899999999986433222 222
Q ss_pred HhhhcccccccC---CCCcEEEeeccCCCChhHHHHH--------HHHHHH-HHhhcCCCCCCCceEEEEEeecCCCceE
Q psy1758 192 LISEQVIPEEYG---GASPFISISAKTGVGINKLLEN--------ISLQAE-ILELKAPVTTPAKGVIIESRLDKGKGPV 259 (1527)
Q Consensus 192 l~~~~~~~~~~~---~~~~v~~iSAktg~gI~eL~~~--------l~~~~~-~~~~~~~~~~p~~~~v~~~~~~~~~G~v 259 (1527)
+.. ....++ ..++++++||++|.|++++++. |....+ +.....+.+.|++..|..++...+.|+.
T Consensus 184 ~~~---~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~~g 260 (434)
T 1zun_B 184 YLK---FAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNFRG 260 (434)
T ss_dssp HHH---HHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSSSCCE
T ss_pred HHH---HHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCCCceE
Confidence 211 111222 2368999999999999985433 211111 1122223456788888777766667788
Q ss_pred EEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEecCCCCCC-CCCCeEEEeCC
Q psy1758 260 ATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVP-FSGEELFVILN 324 (1527)
Q Consensus 260 ~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~-~~G~~~~~~~~ 324 (1527)
..++|.+|+|++||.|.+++ ...+|++|...+ .++.+|.||+.+.+.+....+ .+|+++....+
T Consensus 261 ~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~-~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 261 FAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE-GELEQAGPGQAVTLTMEDEIDISRGDLLVHADN 327 (434)
T ss_dssp EEEECCBSCEETTCEEEETTTCCEEEEEEEEETT-EEESEECTTCEEEEEESSCCCCCTTCEEEETTS
T ss_pred EEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC-cceeEecCCCEEEEEeCCccccCCccEEECCCC
Confidence 89999999999999999965 468999998765 579999999999998765444 69998875443
No 56
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.94 E-value=2.3e-26 Score=287.38 Aligned_cols=334 Identities=21% Similarity=0.248 Sum_probs=237.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc----------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCC
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV----------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPG 125 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG 125 (1527)
+.++|+|+||+|||||||+++|..... .....+|+|.......+.+.+..++||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 457899999999999999999962110 1112357888888888999999999999999
Q ss_pred hhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc---cc--
Q psy1758 126 HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI---PE-- 200 (1527)
Q Consensus 126 ~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~---~~-- 200 (1527)
|++|...+.++++.+|++|+|+|+++++..++...|..+...++|+++|+||+|+...+..+...++...... +.
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~~ 171 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVTW 171 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEE
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeeec
Confidence 9999999999999999999999999999999999999999999999999999999876655444443221100 00
Q ss_pred --------------------------------------------------------------------------ccCCCC
Q psy1758 201 --------------------------------------------------------------------------EYGGAS 206 (1527)
Q Consensus 201 --------------------------------------------------------------------------~~~~~~ 206 (1527)
..+..+
T Consensus 172 pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~ 251 (528)
T 3tr5_A 172 PIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGELT 251 (528)
T ss_dssp EESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEE
T ss_pred ccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCcee
Confidence 001234
Q ss_pred cEEEeeccCCCChhHHHHHHHHHHHHHhhc-------CCCCCCCceEEEEEee--cC-CCceEEEEEeeccEEEeccEEE
Q psy1758 207 PFISISAKTGVGINKLLENISLQAEILELK-------APVTTPAKGVIIESRL--DK-GKGPVATVLIQSGTLRCSDIVV 276 (1527)
Q Consensus 207 ~v~~iSAktg~gI~eL~~~l~~~~~~~~~~-------~~~~~p~~~~v~~~~~--~~-~~G~v~~~~v~~G~l~~gd~vv 276 (1527)
|+|++||++|.||++|++.+......+... .+.+.|+.+.|++... ++ ++|++++++|.+|+|+.|+.|.
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~ 331 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAY 331 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEEEE
T ss_pred EEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCCCEEE
Confidence 899999999999999999997543111000 0124688999999874 77 8999999999999999999998
Q ss_pred ecce--eeeEeEeecc---CCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhh
Q psy1758 277 AGAS--YGRIRSMLNE---NGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHK 351 (1527)
Q Consensus 277 ~g~~--~~kVr~i~~~---~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 351 (1527)
..++ ..||.+++.. +...+.+|.||+.+.+.+++.. ..||.+.. .+. +.
T Consensus 332 ~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~-~~GDtl~~--~~~----~~------------------- 385 (528)
T 3tr5_A 332 HVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTI-QIGDTFTQ--GER----FK------------------- 385 (528)
T ss_dssp ETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSC-CTTCEEES--SCC----CC-------------------
T ss_pred ecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCC-ccCCEEcC--CCC----cc-------------------
Confidence 8653 4566666544 4467899999999999998776 78998873 110 00
Q ss_pred hhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChh
Q psy1758 352 TENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADAS 431 (1527)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~ 431 (1527)
++. + ..-.+.+..-|.....+..+.+..+|.+|..+. .+.+.... .++.+|+++==...-+
T Consensus 386 ~~~----~-~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED-~~~~~~~~-------------~~~~~il~~~G~lhle 446 (528)
T 3tr5_A 386 FTG----I-PNFASELFRLVRLKDPLKQKALLKGLTQLSEEG-ATQLFRPL-------------DSNELILGAVGLLQFD 446 (528)
T ss_dssp BCC----C-EEECCSEEEEEEESCGGGHHHHHHHHHHHHHTT-SCEEEEET-------------TCCCEEEEESSTHHHH
T ss_pred cCC----C-CCCCCCEEEEEEECChhHHHHHHHHHHHHHhcC-CeEEEEcC-------------CCCCEEEEEEcHHHHH
Confidence 000 0 001123445567777888888888888886544 23443221 2466777754333333
Q ss_pred H--HHHHHhCCCeEEEe
Q psy1758 432 T--RKLAQINNINIRYH 446 (1527)
Q Consensus 432 ~--~~~a~~~~V~i~~~ 446 (1527)
+ ..+.++.||++...
T Consensus 447 v~~~rL~~ey~v~v~~~ 463 (528)
T 3tr5_A 447 VVAYRLENEYNVKCVYE 463 (528)
T ss_dssp HHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHhCcEEEEe
Confidence 3 23444556666554
No 57
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.93 E-value=1.8e-26 Score=285.96 Aligned_cols=251 Identities=24% Similarity=0.316 Sum_probs=169.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc--cc-----------------------------cccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN--VV-----------------------------FSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~--~~-----------------------------~~~~~giT~~~~~~~~~~~~~ 116 (1527)
+..+|+++||+|||||||+++|.... +. .....|+|++.....+.+++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 34689999999999999999986422 10 112468899998888888999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEEcccCCcch--hH
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM-------PQTREAIAHAKISGVP-LIVAINKIDKLDIN--LD 186 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~-------~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~--~~ 186 (1527)
.++|||||||++|..++.++++.+|++|||||++++.. +||.+++..+...++| +|+|+||+|+...+ .+
T Consensus 122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~ 201 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEE 201 (467)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHH
T ss_pred EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHH
Confidence 99999999999999999999999999999999999863 6999999999889998 99999999996532 22
Q ss_pred H---HHHHHhhhcccccccC--CCCcEEEeeccCCCChhHHHHH----------HHHHHHHH-hhcCCCCCCCceEEEEE
Q psy1758 187 R---IKQDLISEQVIPEEYG--GASPFISISAKTGVGINKLLEN----------ISLQAEIL-ELKAPVTTPAKGVIIES 250 (1527)
Q Consensus 187 ~---~~~~l~~~~~~~~~~~--~~~~v~~iSAktg~gI~eL~~~----------l~~~~~~~-~~~~~~~~p~~~~v~~~ 250 (1527)
. ...++.........+. ..++++++||++|.|++++++. |....+.. ....+.+.|++..|.++
T Consensus 202 ~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~~ 281 (467)
T 1r5b_A 202 RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASK 281 (467)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEEE
Confidence 1 1111211100000111 1368999999999999986631 22111111 11112357888888888
Q ss_pred eecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEe--cCCCCC-CCCCCeEEE
Q psy1758 251 RLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKV-PFSGEELFV 321 (1527)
Q Consensus 251 ~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~-~~~G~~~~~ 321 (1527)
+. +.|++++++|.+|+|++||.|++++ ...+|++|+...++++.+|.||+.|.+ .| +.. ..+|+++..
T Consensus 282 ~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~ 354 (467)
T 1r5b_A 282 YK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTS 354 (467)
T ss_dssp EE--SSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEEC
T ss_pred Ee--CCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeC
Confidence 76 4789999999999999999998854 568999998876789999999998888 56 332 279998774
No 58
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.93 E-value=1e-25 Score=277.21 Aligned_cols=251 Identities=27% Similarity=0.345 Sum_probs=182.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc--ccc-----------------------------cccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT--NVV-----------------------------FSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~--~~~-----------------------------~~~~~giT~~~~~~~~~~~~~ 116 (1527)
+..+|+++||+|||||||+++|... .+. ....+|+|++.....+.+.+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 3468999999999999999999764 111 112468999998888899999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch--h-
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------VMPQTREAIAHAKISGVP-LIVAINKIDKLDIN--L- 185 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-------~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~--~- 185 (1527)
.++|||||||++|..++.++++.+|++|+|+|++++ ..+|+.+++..+...++| +|+|+||+|+.+.+ .
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 164 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK 164 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHH
Confidence 999999999999999999999999999999999998 788999999998888875 99999999998732 2
Q ss_pred --HHHHHHHhhhcccccccC-CCCcEEEeeccCCCChhHHHH--------HHHHHHH-HHhhcCCCCCCCceEEEEEeec
Q psy1758 186 --DRIKQDLISEQVIPEEYG-GASPFISISAKTGVGINKLLE--------NISLQAE-ILELKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 186 --~~~~~~l~~~~~~~~~~~-~~~~v~~iSAktg~gI~eL~~--------~l~~~~~-~~~~~~~~~~p~~~~v~~~~~~ 253 (1527)
+....++..... ...+. ..++++++||++|.|+.++++ .|..... ...+..+.+.|++..|.+++..
T Consensus 165 ~~~~~~~~i~~~~~-~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v~~~ 243 (435)
T 1jny_A 165 RYKEIVDQVSKFMR-SYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSI 243 (435)
T ss_dssp HHHHHHHHHHHHHH-HTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEEEEE
T ss_pred HHHHHHHHHHHHHH-HcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhccCCCCCCCCCCeEEEEEEEEEe
Confidence 122222221110 00111 246899999999999985543 2221111 1111112246788889999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEec--CCCCCC-CCCCeEE
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVP-FSGEELF 320 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~-~~G~~~~ 320 (1527)
++.|++++++|.+|+|++||.|++.+ ...+|++|... ++++.+|.||+.+.+. |++... .+|+++.
T Consensus 244 ~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~ 314 (435)
T 1jny_A 244 SGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH-HTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVG 314 (435)
T ss_dssp TTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET-TEEESEECTTCEEEEEEESSCGGGCCTTCEEE
T ss_pred CCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC-CcEEeEEcCCCEEEEEEecCCHHHcCCccEec
Confidence 99999999999999999999998854 57899999664 6789999999988874 554222 7999876
No 59
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.93 E-value=5.9e-26 Score=280.73 Aligned_cols=250 Identities=23% Similarity=0.292 Sum_probs=191.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc--cc-----------------------------cccCCceeEEEEEEEEEeCCeE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN--VV-----------------------------FSEAGGITQHIGAYNVVTNHGS 117 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~--~~-----------------------------~~~~~giT~~~~~~~~~~~~~~ 117 (1527)
..+|+++||+|||||||+++|.+.. +. .....|+|++.....+.+.+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4689999999999999999997641 10 1113689999888888899999
Q ss_pred EEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcH-------HHHHHHHHHHHcCCC-EEEEEEcccCCcchhHH--
Q psy1758 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP-------QTREAIAHAKISGVP-LIVAINKIDKLDINLDR-- 187 (1527)
Q Consensus 118 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~-------qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~-- 187 (1527)
++|||||||++|..++..+++.+|++|+|+|++++..+ |+.+++..+...++| +|+|+||+|+.+.+.+.
T Consensus 87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~ 166 (458)
T 1f60_A 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQ 166 (458)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHH
T ss_pred EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHH
Confidence 99999999999999999999999999999999998766 999999888888997 99999999997432222
Q ss_pred -HHHHHhhhcccccccC---CCCcEEEeeccCCCChhHHHH--------------------HHHHHHH-HHhhcCCCCCC
Q psy1758 188 -IKQDLISEQVIPEEYG---GASPFISISAKTGVGINKLLE--------------------NISLQAE-ILELKAPVTTP 242 (1527)
Q Consensus 188 -~~~~l~~~~~~~~~~~---~~~~v~~iSAktg~gI~eL~~--------------------~l~~~~~-~~~~~~~~~~p 242 (1527)
...++... ...++ ..++++++||++|.|+.++.+ .|....+ +.....+.+.|
T Consensus 167 ~i~~~~~~~---l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~~~p 243 (458)
T 1f60_A 167 EIVKETSNF---IKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKP 243 (458)
T ss_dssp HHHHHHHHH---HHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCTTSC
T ss_pred HHHHHHHHH---HHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhccCCCcccCCCC
Confidence 22222111 11111 136899999999999975432 1221111 11222335678
Q ss_pred CceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCC
Q psy1758 243 AKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGE 317 (1527)
Q Consensus 243 ~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~ 317 (1527)
++..|.+++..++.|+|++++|.+|++++||.|.+.+ ...+|++|... +..+.+|.||+.+.+ .|++... .+|+
T Consensus 244 ~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~~~~~~a~aG~~v~i~l~gi~~~~i~rG~ 322 (458)
T 1f60_A 244 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH-HEQLEQGVPGDNVGFNVKNVSVKEIRRGN 322 (458)
T ss_dssp CEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET-TEECSCBCTTCEEEEEESSCCTTTSCTTC
T ss_pred cEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC-CeEEEEEcCCCEEEEEEcCCcccccCcee
Confidence 8999999999999999999999999999999998854 56899999754 568899999988776 4664333 7899
Q ss_pred eEEEe
Q psy1758 318 ELFVI 322 (1527)
Q Consensus 318 ~~~~~ 322 (1527)
++..-
T Consensus 323 vl~~~ 327 (458)
T 1f60_A 323 VCGDA 327 (458)
T ss_dssp EEEET
T ss_pred EEecC
Confidence 87754
No 60
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.93 E-value=9e-25 Score=282.47 Aligned_cols=303 Identities=22% Similarity=0.226 Sum_probs=232.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCC-------eEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNH-------GSITFL 121 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~-------~~i~~i 121 (1527)
.+.++|+|+||+|||||||+++|...... .....++|+......+.+.+ ..++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 35678999999999999999999653210 01135788888888888877 899999
Q ss_pred eCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc---
Q psy1758 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI--- 198 (1527)
Q Consensus 122 DTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~--- 198 (1527)
|||||++|..++.++++.+|++|+|+|+++++..++...|..+...++|+++|+||+|+..++..+...++......
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~~ 167 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPV 167 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCCce
Confidence 99999999999999999999999999999999999999999998899999999999999876655554443221000
Q ss_pred --------------------------cc-c--------------------------------------------------
Q psy1758 199 --------------------------PE-E-------------------------------------------------- 201 (1527)
Q Consensus 199 --------------------------~~-~-------------------------------------------------- 201 (1527)
.. .
T Consensus 168 ~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~ 247 (704)
T 2rdo_7 168 PLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAE 247 (704)
T ss_pred eEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHH
Confidence 00 0
Q ss_pred ----------cCCCCcEEEeeccCCCChhHHHHHHHHHHHHHh------------------hcCCCCCCCceEEEEEeec
Q psy1758 202 ----------YGGASPFISISAKTGVGINKLLENISLQAEILE------------------LKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 202 ----------~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~------------------~~~~~~~p~~~~v~~~~~~ 253 (1527)
.+..+|+++.||++|.|++.|++.+......+. ...+.+.|+.++|++...+
T Consensus 248 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d 327 (704)
T 2rdo_7 248 IKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATD 327 (704)
T ss_pred HHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEEc
Confidence 012368999999999999999999985531110 0112467889999999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEecce--eeeEeEee---ccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHH
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSML---NENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKA 328 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~---~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a 328 (1527)
++.|++++++|++|+|+.||.|.+... ..+|.+++ ..+..++.++.+|+.+.|.|+++. ..||.+..-.+.
T Consensus 328 ~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~-~~GdTl~~~~~~--- 403 (704)
T 2rdo_7 328 PFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV-TTGDTLCDPDAP--- 403 (704)
T ss_pred CCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccC-ccCCEEeCCCcc---
Confidence 999999999999999999999988643 34555554 445577899999999999999887 889988732110
Q ss_pred HHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 329 REIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
..++.+. -....+.+-|.+...+..+.+.++|.++..+...+.+.
T Consensus 404 ---------------------~~l~~~~-----~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~ 448 (704)
T 2rdo_7 404 ---------------------IILERME-----FPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVW 448 (704)
T ss_pred ---------------------cccCCCC-----CCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEE
Confidence 0011110 11356888899999999999999999997776666664
No 61
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.93 E-value=1.2e-25 Score=292.14 Aligned_cols=250 Identities=27% Similarity=0.294 Sum_probs=187.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|++... ......|+|++.....+...+..++|||||||++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 3457899999999999999999976410 112356888888777778888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh--HHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL--DRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
.++.++++.+|++|+|||++++..+|+.+++..+...++| +|+|+||+|+.+... +....++..... ...+ +..+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk-~~G~~~~~v 452 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLS-QYDFPGDDT 452 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH-HTTSCTTTC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHH-hccccccce
Confidence 9999999999999999999999999999999999889999 899999999975211 111111111100 0011 1347
Q ss_pred cEEEeeccCC--------CChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEec
Q psy1758 207 PFISISAKTG--------VGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAG 278 (1527)
Q Consensus 207 ~v~~iSAktg--------~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g 278 (1527)
|++++||++| .|+++|++.|.... .....+.+.|+...|.+++.+++.|+|++++|.+|+|++||.|.+.
T Consensus 453 p~IpvSAktG~ng~~~w~eGI~eLleaL~~~I--p~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ 530 (1289)
T 3avx_A 453 PIVRGSALKALEGDAEWEAKILELAGFLDSYI--PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIV 530 (1289)
T ss_dssp CEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS--CCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred eEEEEEeccCCCCCccccccchhhHhHHhhhc--CCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEe
Confidence 9999999999 46888888875321 1122234568888999999999999999999999999999999875
Q ss_pred ce----eeeEeEeeccCCceeeecCCCcceEec--CCCCCC-CCCCeEE
Q psy1758 279 AS----YGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVP-FSGEELF 320 (1527)
Q Consensus 279 ~~----~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~-~~G~~~~ 320 (1527)
+. ..+|++|.. .++++.+|.||+.|.+. |++... .+|+++.
T Consensus 531 ps~~~~~~kVksI~~-~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 531 GIKETQKSTCTGVEM-FRKLLDEGRAGENVGVLLRGIKREEIERGQVLA 578 (1289)
T ss_dssp SSSSCEEEEEEEEEC-SSCEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred cCCCceeEEEEEEee-cCceeeEEecCCcceeEeeecchhcCCcccEEe
Confidence 43 579999965 45689999999977664 664333 7899776
No 62
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.9e-26 Score=292.68 Aligned_cols=249 Identities=20% Similarity=0.268 Sum_probs=168.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc-------------------------------cccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN-------------------------------VVFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~-------------------------------~~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
..++|+++||+|||||||+++|.... ......+|+|++.....+.+++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 34589999999999999999996421 11122568999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-------cHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHH
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-------MPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRI 188 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-------~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~ 188 (1527)
.++|||||||++|..++..+++.+|++|||||++++. .+|+.+++..+...++| +|+|+||+|+.+.+....
T Consensus 256 ~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~ 335 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRF 335 (592)
T ss_dssp ---CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHH
Confidence 9999999999999999999999999999999999864 89999999999999998 999999999976443322
Q ss_pred ---HHHHhhhccccccc-CCCCcEEEeeccCCCChh--------------HHHHHHHHHHHHHhhcCCCCCCCceEEEEE
Q psy1758 189 ---KQDLISEQVIPEEY-GGASPFISISAKTGVGIN--------------KLLENISLQAEILELKAPVTTPAKGVIIES 250 (1527)
Q Consensus 189 ---~~~l~~~~~~~~~~-~~~~~v~~iSAktg~gI~--------------eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~ 250 (1527)
..++.........+ ...++++++||++|.||. .|++.|... .+...+.+.|++..|.++
T Consensus 336 ~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~---~pp~~~~~~p~r~~v~~v 412 (592)
T 3mca_A 336 QEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL---VPPEKPYRKPLRLSIDDV 412 (592)
T ss_dssp HHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS---CCCSCTTTSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh---ccccccccccchheeeEE
Confidence 22222111000111 123589999999999998 677777432 223345567899999999
Q ss_pred eecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceee-ecCCCcceEe--cCCCCCC-CCCCeEEE
Q psy1758 251 RLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNIL-EAGPSIPVEI--QGLTKVP-FSGEELFV 321 (1527)
Q Consensus 251 ~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~-~a~~~~~v~I--~gl~~~~-~~G~~~~~ 321 (1527)
+.. +.|++++++|.+|+|++||.|++.+ ...+|++|..+ ++.+. +|.||+.|.+ .|+.... .+|+++..
T Consensus 413 ~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~-~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~ 487 (592)
T 3mca_A 413 YRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN-SDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSN 487 (592)
T ss_dssp EEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECS-SSCSCCEEETTCEEEEEESSSCGGGCCTTCEEEC
T ss_pred Eec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEc-CccCcceecCCCEEEEEEccccccccceEEEecc
Confidence 999 9999999999999999999999854 46899999764 46788 9999998874 5765433 78998763
No 63
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=1.2e-24 Score=269.78 Aligned_cols=144 Identities=19% Similarity=0.357 Sum_probs=104.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC--------hhhHHHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG--------HEAFTAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG--------~e~f~~~~~~~~ 137 (1527)
.+.++|+|+|++|+|||||+|+|.+..+ .+...+|+|++.....+.+.+..+.+||||| ++.|......++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 4568999999999999999999998876 4677889999999988888899999999999 889999999999
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+.+|++|+|+|+.++......+.+..+...+.|+++|+||+|+.+.. ... .... ..+ ..+.+++||++|.
T Consensus 101 ~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~-----~~~--~e~~--~lg-~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR-----ANI--YDFY--SLG-FGEPYPISGTHGL 170 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----------------CCSG--GGS-SSSEEECCTTTCT
T ss_pred hhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh-----hhH--HHHH--HcC-CCceEEeeccccc
Confidence 99999999999999999999888888888999999999999986421 000 0111 111 1245678888877
Q ss_pred Chh
Q psy1758 218 GIN 220 (1527)
Q Consensus 218 gI~ 220 (1527)
|+.
T Consensus 171 gv~ 173 (456)
T 4dcu_A 171 GLG 173 (456)
T ss_dssp THH
T ss_pred chH
Confidence 773
No 64
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.93 E-value=8.4e-25 Score=282.51 Aligned_cols=302 Identities=21% Similarity=0.219 Sum_probs=202.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccccc------------------ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVF------------------SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~------------------~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+.++|+|+||+|||||||+++|....... ....++|+......+.+.+..++|||||||++|
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 45789999999999999999997422110 114578888888888999999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----------- 198 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----------- 198 (1527)
...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+...++......
T Consensus 91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi~~ 170 (691)
T 1dar_A 91 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGR 170 (691)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEESC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceeccccC
Confidence 999999999999999999999999999999999999999999999999999877655555444322100
Q ss_pred ------------------c-c-----------------------------------------------------------
Q psy1758 199 ------------------P-E----------------------------------------------------------- 200 (1527)
Q Consensus 199 ------------------~-~----------------------------------------------------------- 200 (1527)
. .
T Consensus 171 ~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~ 250 (691)
T 1dar_A 171 EDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGT 250 (691)
T ss_dssp GGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred CCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 0 0
Q ss_pred ccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhh----------------cCCCCCCCceEEEEEeecCCCceEEEEEe
Q psy1758 201 EYGGASPFISISAKTGVGINKLLENISLQAEILEL----------------KAPVTTPAKGVIIESRLDKGKGPVATVLI 264 (1527)
Q Consensus 201 ~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~----------------~~~~~~p~~~~v~~~~~~~~~G~v~~~~v 264 (1527)
..+..+|++++||++|.|+++|++.|......+.. ..+.+.|+.++|++...+++.|++++++|
T Consensus 251 ~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV 330 (691)
T 1dar_A 251 IDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRV 330 (691)
T ss_dssp HTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEE
T ss_pred HhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEE
Confidence 00123689999999999999999999755311110 01246789999999999999999999999
Q ss_pred eccEEEeccEEEecce--eeeE---eEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhch
Q psy1758 265 QSGTLRCSDIVVAGAS--YGRI---RSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKF 339 (1527)
Q Consensus 265 ~~G~l~~gd~vv~g~~--~~kV---r~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~ 339 (1527)
++|+|+.||.|.+..+ ..+| ..+......++.++.+|+.+.|.|+++. ..||.+..-.+..
T Consensus 331 ~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdtl~~~~~~~------------- 396 (691)
T 1dar_A 331 YSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKET-ITGDTLVGEDAPR------------- 396 (691)
T ss_dssp EESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSC-CTTCEEEETTCCC-------------
T ss_pred eeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccC-ccCCEEecCCCcc-------------
Confidence 9999999999987542 2344 4444455577899999999999999987 6799887422110
Q ss_pred HHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 340 RDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
..++.+.. ..+.+.+-|.+...+..+.+.++|.++..+...+.+
T Consensus 397 ----------~~l~~~~~-----~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v 440 (691)
T 1dar_A 397 ----------VILESIEV-----PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRV 440 (691)
T ss_dssp ----------CBCC-------------------------------------CCCCSCEE
T ss_pred ----------cccCCCCC-----CCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEE
Confidence 00111100 114566778888889999999999999777666665
No 65
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-25 Score=286.42 Aligned_cols=253 Identities=21% Similarity=0.261 Sum_probs=193.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccc-------------------------------cCCceeEEEEEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFS-------------------------------EAGGITQHIGAYNVVTNH 115 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~-------------------------------~~~giT~~~~~~~~~~~~ 115 (1527)
....+|+++||+|||||||+++|.+...... ..+|+|++.....+.+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 4567999999999999999999986643211 136899999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHH
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDR 187 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-------~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~ 187 (1527)
.+++|||||||++|...+..+++.+|++|+|||++++ ..+|+.+++..+...++| +|+|+||+|+.+.+...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 9999999999999999999999999999999999986 568999999999888877 99999999998633222
Q ss_pred ---HHHHHhhhcccccccC---CCCcEEEeeccCCCChhHHHHH-----------HHHHHHHH--h-----hcCCCCCCC
Q psy1758 188 ---IKQDLISEQVIPEEYG---GASPFISISAKTGVGINKLLEN-----------ISLQAEIL--E-----LKAPVTTPA 243 (1527)
Q Consensus 188 ---~~~~l~~~~~~~~~~~---~~~~v~~iSAktg~gI~eL~~~-----------l~~~~~~~--~-----~~~~~~~p~ 243 (1527)
....+... ...++ ..++++++||++|.|++++... |....+.. . ...+.+.|+
T Consensus 325 ~~ei~~~l~~~---l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~ 401 (611)
T 3izq_1 325 FEEIKSKLLPY---LVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF 401 (611)
T ss_dssp HHHHHHHHHHH---HHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCC
T ss_pred HHHHHHHHHHH---HHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccch
Confidence 22222111 11111 1368999999999999976321 22111111 1 112345688
Q ss_pred ceEEEEEeecC---CCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccC-------CceeeecCCCcceEe--cCC
Q psy1758 244 KGVIIESRLDK---GKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNEN-------GKNILEAGPSIPVEI--QGL 309 (1527)
Q Consensus 244 ~~~v~~~~~~~---~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~-------g~~v~~a~~~~~v~I--~gl 309 (1527)
+..|.+++..+ +.|+|++|+|.+|+|++||.|++++. ..+|++|..++ ...+.+|.||+.|.+ .|+
T Consensus 402 r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~ 481 (611)
T 3izq_1 402 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 481 (611)
T ss_dssp EEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSC
T ss_pred hhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeec
Confidence 88899998877 58999999999999999999998764 56899998774 467899999998887 444
Q ss_pred CCCC-CCCCeEEEe
Q psy1758 310 TKVP-FSGEELFVI 322 (1527)
Q Consensus 310 ~~~~-~~G~~~~~~ 322 (1527)
.... .+|+++...
T Consensus 482 ~~~di~rGdvl~~~ 495 (611)
T 3izq_1 482 YPEDIQNGDLAASV 495 (611)
T ss_dssp CTTSCCTTCEEBCS
T ss_pred cHhhCcceEEccCC
Confidence 3222 789987643
No 66
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=99.92 E-value=4.8e-26 Score=229.32 Aligned_cols=113 Identities=31% Similarity=0.584 Sum_probs=95.1
Q ss_pred cccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecC--ChhhHHHHHHHHHHhhHHHHHHHhcc
Q psy1758 540 ERLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFN--KDISIKNILDNLSKAKNYIRFKLSKK 617 (1527)
Q Consensus 540 gr~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~--~~~~~~~~~~~l~~~~g~ir~~l~~~ 617 (1527)
.|..|+.+.|+++|+++++++++||++++||||+|+||+||++|+||||++| ++.+.++++++|++|+||||++||++
T Consensus 6 ~R~~Rv~~~i~~~ls~il~~eikDprl~~vtVt~V~vS~Dl~~AkVyvs~~g~~~~~~~~~~~~~L~~a~g~iR~~l~~~ 85 (128)
T 1jos_A 6 KRSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKA 85 (128)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCCCTTTCCEEEEEEEECTTSCEEEEEEEESCCSCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCccCceEEeEEEECCCCCEEEEEEEeCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4778999999999999999999999999999999999999999999999998 67777899999999999999999999
Q ss_pred cccccCCeEEEEeccchhhHHHHHHHHhhcccccc
Q psy1758 618 LHIHTLPILNFFYDNSIENAMMISKLIDGIKYCMQ 652 (1527)
Q Consensus 618 l~lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~~~ 652 (1527)
++||++|+|+|++|+|++++.+|++||++++.+..
T Consensus 86 l~lr~~PeL~F~~D~s~e~~~~i~~Ll~~~~~~~~ 120 (128)
T 1jos_A 86 MRLRIVPEIRFIYDQSLVEGMRMSNLVTNVVREDE 120 (128)
T ss_dssp HCCSSCCEEEEEECCCCCCCC--------------
T ss_pred cCCCcCCeEEEEEcCcHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999876543
No 67
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.92 E-value=2.9e-24 Score=262.06 Aligned_cols=251 Identities=26% Similarity=0.311 Sum_probs=183.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccc-cCCceeEEE--------------EEEEE-----EeCCeEEEEEeCCCh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFS-EAGGITQHI--------------GAYNV-----VTNHGSITFLDTPGH 126 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~-~~~giT~~~--------------~~~~~-----~~~~~~i~~iDTPG~ 126 (1527)
.+.++|+++||+|||||||+++|++...... .....+... ..... ......++|||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 3568999999999999999999987532110 000011000 00000 011257999999999
Q ss_pred hhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhH-HHHHHHhhhcccccccC
Q psy1758 127 EAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGV-PLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYG 203 (1527)
Q Consensus 127 e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~ 203 (1527)
++|..++..+++.+|++++|+|++++. .+|+.+++..+...+. |+++|+||+|+.+.+.. ....++... ......
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~--l~~~~~ 163 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF--TKGTWA 163 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH--HTTSTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHH--HHhhCC
Confidence 999999999999999999999999987 8999999998887776 79999999999874421 222222211 111123
Q ss_pred CCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCC--------CceEEEEEeeccEEEeccEE
Q psy1758 204 GASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKG--------KGPVATVLIQSGTLRCSDIV 275 (1527)
Q Consensus 204 ~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~~~v~~G~l~~gd~v 275 (1527)
..++++++||++|.|+++|++.|... +.....+.+.|+...|.+++...+ +|+|++++|.+|++++||.|
T Consensus 164 ~~~~ii~vSA~~g~gi~~L~~~l~~~--l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v 241 (403)
T 3sjy_A 164 ENVPIIPVSALHKINIDSLIEGIEEY--IKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEI 241 (403)
T ss_dssp TTCCEEECBTTTTBSHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEE
T ss_pred CCCEEEEEECCCCcChHHHHHHHHHh--CCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEE
Confidence 35799999999999999999999743 233344556788999998876444 89999999999999999999
Q ss_pred Eecce--------------eeeEeEeeccCCceeeecCCCcceEec-----CCCCCC-CCCCeEEEe
Q psy1758 276 VAGAS--------------YGRIRSMLNENGKNILEAGPSIPVEIQ-----GLTKVP-FSGEELFVI 322 (1527)
Q Consensus 276 v~g~~--------------~~kVr~i~~~~g~~v~~a~~~~~v~I~-----gl~~~~-~~G~~~~~~ 322 (1527)
++++. ..+|++|+. +++++.+|.||+.+.+. ++..-. .+|+++..-
T Consensus 242 ~~~p~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~ 307 (403)
T 3sjy_A 242 KVLPGLRVEKQGKVSYEPIFTKISSIRF-GDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLA 307 (403)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEEE-TTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEET
T ss_pred EEeCCcccccccccccccccEEEEEEEE-CCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCC
Confidence 88543 369999976 46789999999999884 221111 578877643
No 68
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.92 E-value=3.7e-24 Score=267.93 Aligned_cols=334 Identities=18% Similarity=0.216 Sum_probs=227.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc----------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCC
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV----------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPG 125 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~----------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG 125 (1527)
+..+|+++||+|||||||+++|...... .....|+|++.....+.+.+..++||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 5578999999999999999999863211 112346666666777888999999999999
Q ss_pred hhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcc--------
Q psy1758 126 HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQV-------- 197 (1527)
Q Consensus 126 ~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~-------- 197 (1527)
|++|...+.++++.+|++|+|+|+++++..|+.+++..+...++|+++|+||+|+...+..+...++.....
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~ 171 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITW 171 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEE
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCccceec
Confidence 999999999999999999999999999999999999999888999999999999987655333333221100
Q ss_pred ---------------------ccc---------------------------------------------------ccCCC
Q psy1758 198 ---------------------IPE---------------------------------------------------EYGGA 205 (1527)
Q Consensus 198 ---------------------~~~---------------------------------------------------~~~~~ 205 (1527)
+.. ..+..
T Consensus 172 pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 251 (529)
T 2h5e_A 172 PIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEI 251 (529)
T ss_dssp EESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTSE
T ss_pred ceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhCce
Confidence 000 00123
Q ss_pred CcEEEeeccCCCChhHHHHHHHHHHHHHhhc-------CCCCCCCceEEEEEee---cCCCceEEEEEeeccEEEeccEE
Q psy1758 206 SPFISISAKTGVGINKLLENISLQAEILELK-------APVTTPAKGVIIESRL---DKGKGPVATVLIQSGTLRCSDIV 275 (1527)
Q Consensus 206 ~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~-------~~~~~p~~~~v~~~~~---~~~~G~v~~~~v~~G~l~~gd~v 275 (1527)
+|+++.||++|.||++|++.+......+... .+.+.|+.++|++... ++++|++++++|.+|+|++||.|
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v 331 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKL 331 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCEE
T ss_pred eEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCEE
Confidence 5899999999999999999997543111000 0114678899999875 35689999999999999999999
Q ss_pred Eecc--eeeeEeEeeccC---CceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhh
Q psy1758 276 VAGA--SYGRIRSMLNEN---GKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLH 350 (1527)
Q Consensus 276 v~g~--~~~kVr~i~~~~---g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 350 (1527)
.+.+ ...||.+++... ...+.+|.||+.+.+.|++.. ..||.+..-.. +.
T Consensus 332 ~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~-~~Gdtl~~~~~------~~------------------ 386 (529)
T 2h5e_A 332 RQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTI-QIGDTFTQGEM------MK------------------ 386 (529)
T ss_dssp EETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCC-CTTCEEESSCC------CC------------------
T ss_pred EEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCC-ccCCEeecCCc------cc------------------
Confidence 8854 346777776654 466889999999999999876 67998872210 00
Q ss_pred hhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCCh
Q psy1758 351 KTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADA 430 (1527)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~ 430 (1527)
++. + ..-.+.+..-|.+...+..+.+.++|.++..+. .+.+.... .++..|+++==...-
T Consensus 387 -~~~----~-~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed-~~~~~~~~-------------~t~~~il~~~Gelhl 446 (529)
T 2h5e_A 387 -FTG----I-PNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEG-AVQVFRPI-------------SNNDLIVGAVGVLQF 446 (529)
T ss_dssp -BCC----C-EEECCSEEEEEEESCC---CTHHHHHHHHHHTT-SCEEEEET-------------TSCCEEEEESSTHHH
T ss_pred -cCC----C-CCCCccEEEEEEECChHHHHHHHHHHHHHHhhC-CEEEEEeC-------------CCCcEEEEEECHHHH
Confidence 000 0 001134556677777777888888887775443 35543321 234666665333333
Q ss_pred hH--HHHHHhCCCeEEEe
Q psy1758 431 ST--RKLAQINNINIRYH 446 (1527)
Q Consensus 431 ~~--~~~a~~~~V~i~~~ 446 (1527)
++ ..+.++.||++...
T Consensus 447 ev~~~rl~~ey~v~v~~~ 464 (529)
T 2h5e_A 447 DVVVARLKSEYNVEAVYE 464 (529)
T ss_dssp HHHHHHHHHHSSCCEEEE
T ss_pred HHHHHHHHHHhCcEEEEe
Confidence 32 34444556665554
No 69
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1
Probab=99.91 E-value=2.4e-26 Score=227.75 Aligned_cols=110 Identities=25% Similarity=0.408 Sum_probs=92.9
Q ss_pred cccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhcccc
Q psy1758 540 ERLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLH 619 (1527)
Q Consensus 540 gr~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~ 619 (1527)
.|..|.++.++++|+++++++++||++++||||+|+||+||++|+||||++|+++ .++++++|++|+||||++||++++
T Consensus 4 ~R~~Rv~~~i~~~ls~il~~eikDprl~~vtVt~V~vs~Dl~~AkVyvs~~~~~~-~~~~~~~L~~a~g~iR~~l~~~l~ 82 (116)
T 1pa4_A 4 YKKERLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNREQ-IDRVVGAFNQAKGVFSRVLAHNLY 82 (116)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSSSSCHHHHCCSCCEEETTTTEEEECCCCSSSSS-HHHHHHHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccCceEEeEEEECCCCCEEEEEEEeCCchh-HHHHHHHHHHhHHHHHHHHHhhcC
Confidence 3778999999999999999999999999999999999999999999999998764 689999999999999999999999
Q ss_pred cccCCeEEEEeccchhhHHHHHHHHhhcccc
Q psy1758 620 IHTLPILNFFYDNSIENAMMISKLIDGIKYC 650 (1527)
Q Consensus 620 lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~ 650 (1527)
||++|+|+|++|+|+|++.+|++||++++.+
T Consensus 83 lr~~PeL~F~~D~s~e~~~~i~~Ll~~~~~~ 113 (116)
T 1pa4_A 83 LAKAVQIHFVKDKAIDNAMRIESIINSLKKS 113 (116)
T ss_dssp CGGGCCCEECSSSTTSSCC------------
T ss_pred CccCCeEEEEECCcHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998653
No 70
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.91 E-value=4e-24 Score=275.39 Aligned_cols=301 Identities=20% Similarity=0.205 Sum_probs=229.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccccccc------------------CCceeEEEEEEEEEeCCeEEEEEeCCChhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSE------------------AGGITQHIGAYNVVTNHGSITFLDTPGHEA 128 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~------------------~~giT~~~~~~~~~~~~~~i~~iDTPG~e~ 128 (1527)
.+..+|+|+||+|||||||+++|......... ..++|.......+.+.+..++|||||||++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 35578999999999999999999843321100 236677777777888899999999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc----------
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI---------- 198 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~---------- 198 (1527)
|...+.++++.+|++++|+|+++++..++.+++..+...++|+++|+||+|+. ....+...++......
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~Pi~~ 165 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDLPLYE 165 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEEEEEE
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcceEEeeecC
Confidence 99999999999999999999999999999999999999999999999999998 6555554444321110
Q ss_pred ----------------------------cc-----------------------------------------------ccC
Q psy1758 199 ----------------------------PE-----------------------------------------------EYG 203 (1527)
Q Consensus 199 ----------------------------~~-----------------------------------------------~~~ 203 (1527)
+. ..+
T Consensus 166 ~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~ 245 (665)
T 2dy1_A 166 GGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRG 245 (665)
T ss_dssp TTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT
T ss_pred CCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Confidence 00 001
Q ss_pred CCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCC-CCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceee
Q psy1758 204 GASPFISISAKTGVGINKLLENISLQAEILELKAP-VTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYG 282 (1527)
Q Consensus 204 ~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~ 282 (1527)
..+|++++||++|.||++||+.|..... .+... .+.|+.++|++...+++.|++++++|++|+|++||.|.+.+...
T Consensus 246 ~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp--~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~~~~ 323 (665)
T 2dy1_A 246 LLYPVALASGEREIGVLPLLELILEALP--SPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQV 323 (665)
T ss_dssp SCEEEEECBTTTTBSHHHHHHHHHHHSC--CHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTTSCE
T ss_pred CeeEEEEeecccCcCHHHHHHHHHHhCC--CccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCCCeE
Confidence 2368999999999999999999975421 11111 46789999999999999999999999999999999998876556
Q ss_pred eEeEeeccC---CceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhh
Q psy1758 283 RIRSMLNEN---GKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDI 359 (1527)
Q Consensus 283 kVr~i~~~~---g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1527)
+|.+++... ..++.+|.+|+.+.|.|++.. ..||.+....+.. ...+.. +
T Consensus 324 ~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~-~~Gdtl~~~~~~~----------------------~~~l~~----~ 376 (665)
T 2dy1_A 324 RLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL-HRGMVLWQGEKPE----------------------SEEVPF----A 376 (665)
T ss_dssp EESSEEEEETTEEEEESCEETTCEEEESSCTTC-CTTCEEESSSCCC----------------------GGGSCC----C
T ss_pred EEeEEEEEeCCCeeECCEECCCCEEEEeCCccC-ccCCEEecCCCcc----------------------ccccCC----C
Confidence 777766544 467889999999999999886 6999887322210 000110 1
Q ss_pred ccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 360 NKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 360 ~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
. -....+.+-|.+...+..+.+.++|.++..+...+++
T Consensus 377 ~-~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v 414 (665)
T 2dy1_A 377 R-LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKL 414 (665)
T ss_dssp C-CCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred C-CCCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEE
Confidence 1 1125678889999999999999999988544444444
No 71
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.91 E-value=5.8e-24 Score=276.27 Aligned_cols=300 Identities=22% Similarity=0.253 Sum_probs=218.7
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeC-------CeEEEEEeC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTN-------HGSITFLDT 123 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~-------~~~i~~iDT 123 (1527)
-.+|+|+||++||||||+++|..... ......|||+......+.|. ++.++|+||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 35799999999999999999853221 12334689998888888875 468999999
Q ss_pred CChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----
Q psy1758 124 PGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----- 198 (1527)
Q Consensus 124 PG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----- 198 (1527)
|||.+|.....++++.+|++|+|+|+.+|+++||...|+++...++|+++|+||+|+..++......++......
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~~~~ 172 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPV 172 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCEEES
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcccceeee
Confidence 999999999999999999999999999999999999999999999999999999999887765555444221000
Q ss_pred --------------------------------------------------------------------------------
Q psy1758 199 -------------------------------------------------------------------------------- 198 (1527)
Q Consensus 199 -------------------------------------------------------------------------------- 198 (1527)
T Consensus 173 ~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~~ 252 (709)
T 4fn5_A 173 QLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEIK 252 (709)
T ss_dssp EEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHHH
T ss_pred ecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHHH
Confidence
Q ss_pred -----ccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHh------------------hcCCCCCCCceEEEEEeecCC
Q psy1758 199 -----PEEYGGASPFISISAKTGVGINKLLENISLQAEILE------------------LKAPVTTPAKGVIIESRLDKG 255 (1527)
Q Consensus 199 -----~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~------------------~~~~~~~p~~~~v~~~~~~~~ 255 (1527)
....+...|++..||.++.|+..|++.+......+. ...+++.|+.++|++...++.
T Consensus 253 ~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~ 332 (709)
T 4fn5_A 253 EGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPF 332 (709)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTT
T ss_pred HHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeecccC
Confidence 000123468999999999999999999975421110 012345788999999999999
Q ss_pred CceEEEEEeeccEEEeccEEEecce--eeeEeEee---ccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHH
Q psy1758 256 KGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSML---NENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKARE 330 (1527)
Q Consensus 256 ~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~---~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~ 330 (1527)
.|.++.++|++|+|++||.|.+... ..+|..++ .....++.++.+|+.+.|.|++.+ ..||.+.......
T Consensus 333 ~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~-~~gdTl~~~~~~~---- 407 (709)
T 4fn5_A 333 VGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDV-TTGDTLCSIEKPI---- 407 (709)
T ss_dssp TBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSC-CTTCEEECSSSCC----
T ss_pred CCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcC-ccCCEecCCCccc----
Confidence 9999999999999999999876432 33444444 444467899999999999999875 7899886332210
Q ss_pred HHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 331 IGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
.+..+. . ....+.+-|.+...+..+.+.+.|.++..+...+.+
T Consensus 408 --------------------~~~~~~--~---~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v 450 (709)
T 4fn5_A 408 --------------------ILERMD--F---PEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRV 450 (709)
T ss_dssp --------------------BCC---------CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEE
T ss_pred --------------------cCCCCC--C---CCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEE
Confidence 000000 0 124466778888888999999999888544333333
No 72
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.91 E-value=7.9e-26 Score=289.87 Aligned_cols=237 Identities=27% Similarity=0.318 Sum_probs=188.9
Q ss_pred CEEEEEecCCCChhHHHHHHHcccccc------------------ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVF------------------SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~------------------~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 131 (1527)
.+|+|+||+|||||||+++|....... ....|||+......+.|++++++|+|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 469999999999999999985322111 11238999988899999999999999999999999
Q ss_pred HHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-------------
Q psy1758 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI------------- 198 (1527)
Q Consensus 132 ~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~------------- 198 (1527)
.+.++++.+|++|+|+|+.+|+++||..+|+++...++|.|+++||+|+..++......++......
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 162 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPN 162 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGG
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEeecc
Confidence 9999999999999999999999999999999999999999999999999887766655544321100
Q ss_pred -------------------------------------------ccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhh
Q psy1758 199 -------------------------------------------PEEYGGASPFISISAKTGVGINKLLENISLQAEILEL 235 (1527)
Q Consensus 199 -------------------------------------------~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~ 235 (1527)
....+...|+++.||+++.||+.|++.+.... ..+
T Consensus 163 ~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~--p~p 240 (638)
T 3j25_A 163 VCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF--YSS 240 (638)
T ss_dssp GCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC--CCS
T ss_pred ccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc--cCc
Confidence 00012357999999999999999999996432 222
Q ss_pred cCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc-eeeeEeEeeccCC---ceeeecCCCcceEecC
Q psy1758 236 KAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA-SYGRIRSMLNENG---KNILEAGPSIPVEIQG 308 (1527)
Q Consensus 236 ~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~-~~~kVr~i~~~~g---~~v~~a~~~~~v~I~g 308 (1527)
....+.|+.+.|++...+++.|.+++++|++|+|+.||.|.+.. ...+|..++...+ .++.++.+|+.+.+.|
T Consensus 241 ~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g 317 (638)
T 3j25_A 241 THRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSINGELCKIDRAYSGEIVILQN 317 (638)
T ss_dssp GGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCCSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS
T ss_pred ccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcceeEEeeecccccccccccccccceEEEEec
Confidence 22345688999999999999999999999999999999986643 3456666665555 4567788888777765
No 73
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=3.1e-23 Score=267.99 Aligned_cols=301 Identities=22% Similarity=0.243 Sum_probs=223.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc--cc----------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN--VV----------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~--~~----------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+..+|+|+||+|||||||+++|.... +. ....+++|+......+.+++..++|||||||.+|
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 45789999999999999999997421 10 0113577887777888899999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----------- 198 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----------- 198 (1527)
...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+....+......
T Consensus 89 ~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ipisa 168 (693)
T 2xex_A 89 TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGA 168 (693)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEEECC
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEeeccc
Confidence 999999999999999999999999999999999999999999999999999876654444433221000
Q ss_pred ------------------c-c-----------------------------------------------------------
Q psy1758 199 ------------------P-E----------------------------------------------------------- 200 (1527)
Q Consensus 199 ------------------~-~----------------------------------------------------------- 200 (1527)
. .
T Consensus 169 ~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~ 248 (693)
T 2xex_A 169 EDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQAT 248 (693)
T ss_dssp GGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 0 0
Q ss_pred ccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhc------------------CCCCCCCceEEEEEeecCCCceEEEE
Q psy1758 201 EYGGASPFISISAKTGVGINKLLENISLQAEILELK------------------APVTTPAKGVIIESRLDKGKGPVATV 262 (1527)
Q Consensus 201 ~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~------------------~~~~~p~~~~v~~~~~~~~~G~v~~~ 262 (1527)
..+..+|+++.||++|.|++.|++.+......+... .+.+.|+.++|++...+++.|.++++
T Consensus 249 ~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~ 328 (693)
T 2xex_A 249 TNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFF 328 (693)
T ss_dssp HTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEE
T ss_pred HhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEE
Confidence 001236899999999999999999997553211110 12467899999999999999999999
Q ss_pred EeeccEEEeccEEEecc--eeeeEeEeeccCC---ceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhh
Q psy1758 263 LIQSGTLRCSDIVVAGA--SYGRIRSMLNENG---KNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQG 337 (1527)
Q Consensus 263 ~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g---~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~ 337 (1527)
+|++|+|+.||.|.+.. ...+|.+++...| .++.++.+|+.+.|.|++.. ..||.+..-.+.
T Consensus 329 RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~GdTl~~~~~~------------ 395 (693)
T 2xex_A 329 RVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT-GTGDTLCGEKND------------ 395 (693)
T ss_dssp EEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSC-CTTCEEEETTCC------------
T ss_pred EEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccC-ccCCEEecCCCc------------
Confidence 99999999999998754 3356666655544 56889999999999999887 679988732211
Q ss_pred chHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 338 KFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
..+.. +. -....+.+-|.+...+..+.+.++|.++..+...+.+
T Consensus 396 ------------~~~~~----~~-~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~ 439 (693)
T 2xex_A 396 ------------IILES----ME-FPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHA 439 (693)
T ss_dssp ------------EECCC----CS-SCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred ------------cccCC----cC-CCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEE
Confidence 00010 10 1125567778888888899999999988544434444
No 74
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=99.89 E-value=1.8e-24 Score=202.63 Aligned_cols=85 Identities=46% Similarity=0.830 Sum_probs=82.3
Q ss_pred eeeeeeEeEEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhh
Q psy1758 468 KKENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIEN 547 (1527)
Q Consensus 468 ~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~ 547 (1527)
++|+++|+|+|+++|++||.|+||||+|++|++++|+.+||+|||++||+|+|.||||||+||+||++|+|||+.+..|+
T Consensus 1 ~~E~~~G~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~~ 80 (99)
T 1d1n_A 1 YEEKVIGQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNFN 80 (99)
T ss_dssp CCCCEEEEEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTCS
T ss_pred CeEEEEEEEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCcC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q psy1758 548 QIQRD 552 (1527)
Q Consensus 548 ~i~~~ 552 (1527)
+|+..
T Consensus 81 dik~G 85 (99)
T 1d1n_A 81 DIKEG 85 (99)
T ss_dssp SCSSC
T ss_pred CCCCC
Confidence 99873
No 75
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=99.89 E-value=3.6e-24 Score=208.67 Aligned_cols=99 Identities=23% Similarity=0.450 Sum_probs=94.0
Q ss_pred cccchhhhhhhhhhHHhhhhhccCcce--eeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhcc
Q psy1758 540 ERLSRIENQIQRDISEIIAFDIQNPII--NIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKK 617 (1527)
Q Consensus 540 gr~~r~~~~i~~~Iseii~~ei~d~~~--~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~ 617 (1527)
.|..|.++.|+++|+++ +++++||++ ++||||+|+||+||++|+||||++|++++.++++++|++|+||||++||++
T Consensus 6 ~R~~Rv~~~i~~~ls~i-~~eikDprl~~~~vtVt~V~vs~Dl~~AkVyvs~~g~~~~~~~~~~~L~~a~g~iR~~l~~~ 84 (106)
T 2kzf_A 6 YRKAMLESEIQKLLMEA-LQQLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERKETVEILNRAKGFFRTFIAKN 84 (106)
T ss_dssp TTTHHHHHHHHHHHHHH-HHTTCCSSCCGGGCCEEEEEECTTSCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHhccCccccCCceEEEEEEECCCCCEEEEEEEeCCChhhHHHHHHHHHHhHHHHHHHHHhh
Confidence 37789999999999999 999999999 899999999999999999999999977778999999999999999999999
Q ss_pred cccccCCeEEEEeccchhhHHH
Q psy1758 618 LHIHTLPILNFFYDNSIENAMM 639 (1527)
Q Consensus 618 l~lr~~P~l~F~~D~s~~~~~~ 639 (1527)
++||++|+|+|++|+|+|++.+
T Consensus 85 l~lr~~P~L~F~~D~s~e~~~~ 106 (106)
T 2kzf_A 85 LRLYVAPEIRFYEDKGIEASVK 106 (106)
T ss_dssp SCSSSCCEEEEESSCCCTTCCC
T ss_pred cCCccCCeEEEEECCchhhhcC
Confidence 9999999999999999998753
No 76
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=5.4e-24 Score=206.10 Aligned_cols=88 Identities=28% Similarity=0.536 Sum_probs=84.8
Q ss_pred CcceeeeeeEeEEEeEEEEcCCCCe---EEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccc
Q psy1758 465 PLEKKENLLGLAEIRQVILVNKVSK---IAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECER 541 (1527)
Q Consensus 465 ~~~~~e~~~g~a~v~~vF~~~k~~~---iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr 541 (1527)
.|.++|+++|+|+|+++|++++.|+ ||||+|++|+|++|+.+||+|||++||+|+|.||||||+||+||++|+|||+
T Consensus 2 ~~~~~E~v~G~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi 81 (120)
T 2crv_A 2 SSGSSGYPIGEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGL 81 (120)
T ss_dssp CCSCSSCEEEEEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEE
T ss_pred CCCcEEEEEEEEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEE
Confidence 4788999999999999999998888 9999999999999999999999999999999999999999999999999999
Q ss_pred cchhhh-hhhhh
Q psy1758 542 LSRIEN-QIQRD 552 (1527)
Q Consensus 542 ~~r~~~-~i~~~ 552 (1527)
.+..|+ +|+..
T Consensus 82 ~l~~fniDik~G 93 (120)
T 2crv_A 82 SLDEEKVEFKPG 93 (120)
T ss_dssp ECSCTTSCCCTT
T ss_pred EEccCCCCCCCC
Confidence 999999 99873
No 77
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=99.89 E-value=1.5e-24 Score=219.03 Aligned_cols=113 Identities=12% Similarity=0.224 Sum_probs=104.9
Q ss_pred cccccchhhhhhhhhhHHhhhhhccCccee--eeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHh
Q psy1758 538 ECERLSRIENQIQRDISEIIAFDIQNPIIN--IITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLS 615 (1527)
Q Consensus 538 ecgr~~r~~~~i~~~Iseii~~ei~d~~~~--~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~ 615 (1527)
+..|..|+++.|+++|++++++++.||++. +||||+|+||+||++|+||||+++++.+.+.++++|++|+||||++||
T Consensus 11 ~s~R~~Rv~~~i~~~ls~il~~~~~dp~l~~~~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~~a~g~iR~~l~ 90 (129)
T 2e7g_A 11 DHARLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLM 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTTCHHHHHHTCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccCccccCCeeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHHHHhHHHHHHHHH
Confidence 456888999999999999999999999997 899999999999999999999665666668899999999999999999
Q ss_pred cccccccCCeEEEEeccchhhHHHHHHHHhhcccc
Q psy1758 616 KKLHIHTLPILNFFYDNSIENAMMISKLIDGIKYC 650 (1527)
Q Consensus 616 ~~l~lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~ 650 (1527)
++++||++|+|+|++|+|++++.+|++||++++..
T Consensus 91 ~~l~lr~~PeL~F~~D~s~e~~~~i~~LL~~~~~~ 125 (129)
T 2e7g_A 91 SQQTLRNVPPIVFVQDKGNAALAELDQLLAVADSG 125 (129)
T ss_dssp TCTTCSCCCCEEEEETTCCCCCCCCCCCSCCCCCC
T ss_pred hhcCCccCCeEEEEEcCCHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999998754
No 78
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=99.88 E-value=2.7e-23 Score=197.95 Aligned_cols=91 Identities=22% Similarity=0.409 Sum_probs=87.4
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhccccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHI 620 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~l 620 (1527)
|..|.++.++++|++++ ++++||++++||||+|+||+||++|+||||++|+ .++++++|++|+||||++||++++|
T Consensus 4 R~~Rv~~~i~~~ls~il-~ei~Dprl~~vtVt~V~vs~Dl~~AkVyvs~~~~---~~~~~~~L~~a~g~iR~~l~~~l~l 79 (95)
T 2dyj_A 4 GKAHLEAQLKRALAEEI-QALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFRE---EEGALRALSRAERRLVAALARRVRM 79 (95)
T ss_dssp CHHHHHHHHHHHHHHHH-HTCCCGGGTTCEEEEEEECTTSSEEEEEEECSSC---HHHHHHHHHHTHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCcccCcEEEEEEEECCCCCEEEEEEEeCCC---HHHHHHHHHHhHHHHHHHHHhhcCC
Confidence 66789999999999999 9999999999999999999999999999999987 5789999999999999999999999
Q ss_pred ccCCeEEEEeccchh
Q psy1758 621 HTLPILNFFYDNSIE 635 (1527)
Q Consensus 621 r~~P~l~F~~D~s~~ 635 (1527)
|++|+|+|++|+|+|
T Consensus 80 r~~P~L~F~~D~s~e 94 (95)
T 2dyj_A 80 RRLPRLEFLPWRASP 94 (95)
T ss_dssp SSCCEEEEEEGGGCC
T ss_pred ccCCeEEEEEcCCCC
Confidence 999999999999987
No 79
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.87 E-value=2.3e-22 Score=215.61 Aligned_cols=167 Identities=65% Similarity=0.972 Sum_probs=142.2
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..+.++|+++|++|+|||||+++|.+..+...+.+++|.+.....+.+++..+.+|||||++.|..++.+++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 35778999999999999999999999988877778888887777888899999999999999999988899999999999
Q ss_pred EEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 146 VVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
|+|++++...++.+.+..+...++|+++|+||+|+...+..+....+.........++..++++++||++|.|+++++++
T Consensus 85 v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 164 (178)
T 2lkc_A 85 VVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEM 164 (178)
T ss_dssp EEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHH
Confidence 99999998899999988888889999999999999875544444444433444444554578999999999999999999
Q ss_pred HHHHHHH
Q psy1758 226 ISLQAEI 232 (1527)
Q Consensus 226 l~~~~~~ 232 (1527)
|......
T Consensus 165 l~~~~~~ 171 (178)
T 2lkc_A 165 ILLVSEM 171 (178)
T ss_dssp HHHHHHH
T ss_pred HHHhhhh
Confidence 9876544
No 80
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.82 E-value=7.1e-20 Score=241.21 Aligned_cols=303 Identities=20% Similarity=0.222 Sum_probs=200.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-c---------------cccCCceeEEEEEEEEEeC----------------C
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-V---------------FSEAGGITQHIGAYNVVTN----------------H 115 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~---------------~~~~~giT~~~~~~~~~~~----------------~ 115 (1527)
+..+|+|+||+|||||||+++|..... . .....|+|+......+.+. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 346899999999999999999976421 1 1123456665555555554 5
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc----hhH-----
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI----NLD----- 186 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~----~~~----- 186 (1527)
..++|||||||++|...+.++++.+|++|+|+|+++++..|+...|..+...++|+++|+||+|+... +.+
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~~~ 177 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQT 177 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHHHH
Confidence 68999999999999999999999999999999999999999999999888889999999999998732 111
Q ss_pred --HHHHHHhhhcc--cc---cc--cC-CCCcEEEeeccCCCCh-------------------------------------
Q psy1758 187 --RIKQDLISEQV--IP---EE--YG-GASPFISISAKTGVGI------------------------------------- 219 (1527)
Q Consensus 187 --~~~~~l~~~~~--~~---~~--~~-~~~~v~~iSAktg~gI------------------------------------- 219 (1527)
+....+..... .. .. +. ...++...||++|.|+
T Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~ 257 (842)
T 1n0u_A 178 FARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKW 257 (842)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEE
T ss_pred HHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeE
Confidence 11221111100 00 00 00 0124555677554221
Q ss_pred --------------------------------------------------------------------------hHHHHH
Q psy1758 220 --------------------------------------------------------------------------NKLLEN 225 (1527)
Q Consensus 220 --------------------------------------------------------------------------~eL~~~ 225 (1527)
+.|++.
T Consensus 258 ~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd~ 337 (842)
T 1n0u_A 258 TNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEM 337 (842)
T ss_dssp ESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHHH
T ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHHH
Confidence 233333
Q ss_pred HHHHHH----H-------------------HhhcCCCCCCCceEEEEEeecCCCce-EEEEEeeccEEEeccEEEe-cce
Q psy1758 226 ISLQAE----I-------------------LELKAPVTTPAKGVIIESRLDKGKGP-VATVLIQSGTLRCSDIVVA-GAS 280 (1527)
Q Consensus 226 l~~~~~----~-------------------~~~~~~~~~p~~~~v~~~~~~~~~G~-v~~~~v~~G~l~~gd~vv~-g~~ 280 (1527)
++.... . .....+++.|+.++|++...++..|. +++++|++|+|+.|+.|.+ |+.
T Consensus 338 i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~ 417 (842)
T 1n0u_A 338 IVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPN 417 (842)
T ss_dssp HHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTT
T ss_pred HHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecccc
Confidence 331100 0 00012456789999999999999996 9999999999999999953 321
Q ss_pred ----------eeeEeEeeccCC---ceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHH
Q psy1758 281 ----------YGRIRSMLNENG---KNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQ 347 (1527)
Q Consensus 281 ----------~~kVr~i~~~~g---~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~ 347 (1527)
..||.+++...| .++.++.+|+.+.|.|++..-...+.+. +.+..
T Consensus 418 ~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~---~~~~~------------------- 475 (842)
T 1n0u_A 418 YVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLT---TSETA------------------- 475 (842)
T ss_dssp CCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEE---SCTTC-------------------
T ss_pred ccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeec---CCCCc-------------------
Confidence 356666665544 5688999999999999988643223444 11100
Q ss_pred hhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 348 KLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
..++. +.-.....+.+-|.+...+..+.+.++|.++..+...+.+
T Consensus 476 --~~l~~----~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v 520 (842)
T 1n0u_A 476 --HNMKV----MKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLT 520 (842)
T ss_dssp --CCBCC----CCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEE
T ss_pred --ccccc----CCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEE
Confidence 00111 1101124567778888999999999999988655444554
No 81
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.82 E-value=7.1e-22 Score=239.97 Aligned_cols=253 Identities=20% Similarity=0.249 Sum_probs=168.2
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe-EEEEEeCCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGH 995 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~iniiDTPGh 995 (1527)
.+....++|+|+|++|+|||||+++|+... ....+..+|+|++.....+.+.+. .++|||||||
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~---------------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~ 93 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQN---------------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL 93 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSST
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCC---------------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCC
Confidence 345567899999999999999999998652 123456689999999999999876 9999999999
Q ss_pred CCchH-------HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 996 ADFGG-------EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 996 ~df~~-------ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
.+|.. .+..++..+|++|+|+|+ +..+++..++..+.+.++|+++|+||+|+..++..+..+++
T Consensus 94 ~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l------- 164 (423)
T 3qq5_A 94 DDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLY------- 164 (423)
T ss_dssp TCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHS-------
T ss_pred CcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHH-------
Confidence 99863 256678889999999999 78899999999999999999999999999877644222221
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC-------CCCCceeEEEeeeccccCce----
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN-------SNNPLQLQIISLEYSSYLGK---- 1137 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~-------~~~p~~~~V~~~~~d~~~G~---- 1137 (1527)
....++|++++||++|. |++++++.|.+.+|.+... ..+.+++++..++.....|+
T Consensus 165 ---~~~~g~~v~~vSAktg~----------gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkgr~ilp 231 (423)
T 3qq5_A 165 ---ESRYEAKVLLVSALQKK----------GFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMP 231 (423)
T ss_dssp ---SCCTTCCCCCCSSCCTT----------STTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTTCCCHH
T ss_pred ---HHHcCCCEEEEECCCCC----------CHHHHHHHHHHhhhhhccCcchhhccccCceEEEEeeccccCcCCccccc
Confidence 12345689999999998 9999999999999655211 13445666666555554444
Q ss_pred ----------------EEEEEeecCccccC-CEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeec------CCEEE-
Q psy1758 1138 ----------------IGIGRILSGRIKSL-QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALS------GDIVL- 1193 (1527)
Q Consensus 1138 ----------------v~~grV~sG~lk~G-d~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~A------GdIva- 1193 (1527)
++..+...+.|+.. +...++-+ +. ....+|.. ..+...+..+... ||+..
T Consensus 232 ~~~~ird~l~~~~~~~~~~~~~l~~~l~~l~~~~~lv~t-ds-q~~~~v~~----~~p~~~~~t~~s~l~a~~kG~~~~~ 305 (423)
T 3qq5_A 232 QVHAIREALDREAIALVVKERELRYVMENIGMKPKLVIT-DS-QVAMKVAS----DVPEDVELTTFSIVESRYRGDLAYF 305 (423)
T ss_dssp HHHHHHHHHHTTCEEEECCSTTHHHHHHHCSSCCSCCCB-CT-THHHHHHH----TCCCSSSCCCBHHHHHHHSSCSHHH
T ss_pred hHHHHHHHHHhhhHHHHhhHHHHHHHHHhcCCCccEEEe-cc-HHHHHHhc----cCCCCCCcccHHHHhhccCCCHHHH
Confidence 23333334455443 22222212 11 11233433 2344445555444 99973
Q ss_pred Eec---ceecccCCeeeCCCCC
Q psy1758 1194 ITG---IEEICIGSTICDPSKP 1212 (1527)
Q Consensus 1194 i~g---l~~~~iGdTi~~~~~~ 1212 (1527)
++| +++++.|||+...+..
T Consensus 306 ~~g~~~~~~~~~gd~v~~~e~c 327 (423)
T 3qq5_A 306 VESVRKIEELEDGDTVVIMEGC 327 (423)
T ss_dssp HHHHHTTTTCCTTCEEEEECCS
T ss_pred HHHHHHHHhCCCCCEEEEeccC
Confidence 445 5577899999876654
No 82
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.81 E-value=7.8e-20 Score=203.45 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=112.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|||||||+++|....+...+.+++..++....+..++. ++.||||||+++|..++..+++.+|+++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 35689999999999999999999999998888888888877777777665 6789999999999999999999999999
Q ss_pred EEEeCCCCC----cHHHHHHHHHHHHcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGV----MPQTREAIAHAKISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~----~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|.++.. ...|...+......++|++||+||+|+.+.. .++. ..+. ..++ ++|+++||++|.
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~-~~~a------~~~~--~~~~e~SAktg~ 161 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEG-ERKA------KELN--VMFIETSAKAGY 161 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHH-HHHH------HHHT--CEEEEEBTTTTB
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHH-hhHH------HHhC--CeeEEEeCCCCc
Confidence 999999832 2334444444445678999999999996532 1111 1111 1222 579999999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
||+++|+.|+..
T Consensus 162 nV~e~F~~i~~~ 173 (216)
T 4dkx_A 162 NVKQLFRRVAAA 173 (216)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999754
No 83
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=2.8e-19 Score=220.31 Aligned_cols=161 Identities=20% Similarity=0.362 Sum_probs=124.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----------hhHHHHHH-
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----------EAFTAMRA- 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----------e~f~~~~~- 134 (1527)
...++|+++|++|||||||+|+|.+... ..+..+|+|++.....+.+++..+.||||||+ |.|..++.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 4568999999999999999999998876 47788999999988889999999999999998 88887765
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
.+++.+|++++|+|++++...|+.+++..+...++|+++|+||+|+.+... .+....+..... +...+|++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~ 328 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ----FLDYAPILFM 328 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG----GGTTSCEEEC
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc----cCCCCCEEEE
Confidence 578999999999999999999999888888888999999999999976432 222222222111 1134699999
Q ss_pred eccCCCChhHHHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQAE 231 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~~~ 231 (1527)
||++|.|++++++.+.....
T Consensus 329 SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999999976543
No 84
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.78 E-value=9.4e-19 Score=191.12 Aligned_cols=161 Identities=15% Similarity=0.169 Sum_probs=115.5
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHcccccc-ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~-~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
.....++|+++|++|+|||||+++|.+..+.. .+.+++. .....+...+..+.||||||++.|..++..+++.+|++
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 34566799999999999999999999988766 5555444 33344567888999999999999999999999999999
Q ss_pred EEEEeCCCCCcHH-HHHHHHHHHHc-----------CCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 144 VLVVAADDGVMPQ-TREAIAHAKIS-----------GVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 144 IlVvda~~g~~~q-t~e~i~~~~~~-----------~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
|+|+|+++....+ ..+.+..+... ++|+++|+||+|+..... .+....+.... ... ...+++++
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~ 167 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT-LMG--DHPFVIFA 167 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH-HHT--TSCEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh-hcc--CCeeEEEE
Confidence 9999999864322 22333333322 899999999999976422 22222221111 001 12368999
Q ss_pred eeccCCCChhHHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~~ 230 (1527)
+||++|.||+++|++|....
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHHHH
Confidence 99999999999999998654
No 85
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.77 E-value=2.9e-18 Score=180.25 Aligned_cols=149 Identities=23% Similarity=0.314 Sum_probs=113.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhh-------HHHHHHhhccccC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA-------FTAMRARGAKVTD 141 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~-------f~~~~~~~~~~aD 141 (1527)
++|+++|++|+|||||+++|.+..+. ....+++|.+.....+..++..+.+|||||++. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 57999999999999999999988753 566678888888888888899999999999887 5667778889999
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 142 IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
++++|+|++++...........+...+.|+++|+||+|+.+... ... . .. .++ ..+++++||++|.|+++
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----~~~--~-~~-~~~-~~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL-----YLG--P-LY-GLG-FGDPIPTSSEHARGLEE 151 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG-----GCG--G-GG-GGS-SCSCEECBTTTTBSHHH
T ss_pred EEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH-----hHH--H-HH-hCC-CCCeEEEecccCCChHH
Confidence 99999999998776666666666678899999999999976310 000 1 11 222 23799999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
++++|..
T Consensus 152 l~~~l~~ 158 (161)
T 2dyk_A 152 LLEAIWE 158 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 86
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.77 E-value=2.3e-19 Score=210.00 Aligned_cols=246 Identities=16% Similarity=0.233 Sum_probs=168.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh-hHH--------HHHHhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE-AFT--------AMRARG 136 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e-~f~--------~~~~~~ 136 (1527)
.+..+|+|+|++|+|||||+|+|.+..+ ..+..+++|++.....+.+++.+++||||||+. .+. .....+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3556899999999999999999999876 456667788776666677888899999999987 322 223466
Q ss_pred ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 137 AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
++.+|++++|+|+++ +..++...+..+...+.|+++++||+|+... .......+... ...+ +..+++++||++|
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~-~~~~~~~l~~l---~~~~-~~~~~i~iSA~~g 159 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE-KADLLPHLQFL---ASQM-NFLDIVPISAETG 159 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC-HHHHHHHHHHH---HTTS-CCSEEEECCTTTT
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc-HHHHHHHHHHH---HHhc-CcCceEEEECCCC
Confidence 789999999999988 8888888887777778999999999999761 11121211111 1111 2237999999999
Q ss_pred CChhHHHHHHHHHHHHHhhcCC----CCCC-----------------------CceEEEEEeecCCCceEEEEEeeccEE
Q psy1758 217 VGINKLLENISLQAEILELKAP----VTTP-----------------------AKGVIIESRLDKGKGPVATVLIQSGTL 269 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~~~~~~~~~----~~~p-----------------------~~~~v~~~~~~~~~G~v~~~~v~~G~l 269 (1527)
.|+++|++.+.......+...+ .+.| ..+++++.+.++.. |++
T Consensus 160 ~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~----------~~~ 229 (301)
T 1ega_A 160 LNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNER----------GGY 229 (301)
T ss_dssp TTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSS----------CSE
T ss_pred CCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCC----------CeE
Confidence 9999999998742110000000 0111 12344444443333 444
Q ss_pred EeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHH
Q psy1758 270 RCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAR 329 (1527)
Q Consensus 270 ~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~ 329 (1527)
+....+.+-...-| .-+.+..|..++++++..+..|.++-..+..++.+..+....+.+
T Consensus 230 ~i~~~i~v~~~~~k-~i~ig~~G~~~k~ig~~ar~~i~~~~~~~v~l~l~vkv~~~w~~~ 288 (301)
T 1ega_A 230 DINGLILVEREGQK-KMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADD 288 (301)
T ss_dssp EEEEEEEESSHHHH-HHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEEEEEEEETTCCCHH
T ss_pred EEEEEEEEEECCce-EEEECCCcHHHHHHHHHHHHHHHHHHCCCeEEEEEEEECCCcccC
Confidence 54444444221111 334567888899999999999999988888999988888765443
No 87
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.77 E-value=2.6e-18 Score=185.51 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=119.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 3457899999999999999999999888777777888777777777777 47899999999999999999999999999
Q ss_pred EEEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++.... .|...+......++|+++|+||+|+....... ....+. ..+ .++++++||++|.|
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~g 159 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFA------QEN--ELMFLETSALTGEN 159 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHT--TCEEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHH------HHc--CCEEEEecCCCCCC
Confidence 99999984332 23333333334678999999999996422111 111111 111 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|+.+....
T Consensus 160 i~~l~~~l~~~~ 171 (186)
T 2bme_A 160 VEEAFVQCARKI 171 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998554
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.77 E-value=3.4e-18 Score=185.63 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=116.3
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..+..+|+++|++|+|||||+++|.+..+.....+++..+. ..+...+..+.||||||++.|..++..+++.+|++++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE--EEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 34567999999999999999999998887655555554444 3466778899999999999999999999999999999
Q ss_pred EEeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+ ..+.+..+. ..++|+++|+||+|+.... ..+....+.... .....++++++||++|.|+
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSA----IQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG----CCSSCEEEEECCTTTCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhh----hccCCeeEEEEECCCCCCH
Confidence 99999843322 223333332 2578999999999997642 222222221111 1113458999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
++++++|..
T Consensus 173 ~~l~~~l~~ 181 (188)
T 1zd9_A 173 DITLQWLIQ 181 (188)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999964
No 89
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=2.1e-18 Score=201.55 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=123.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhh--------HHHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA--------FTAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~--------f~~~~~~~~ 137 (1527)
.+..+|+++|++|+|||||+|+|.+..+. .+..+++|++.....+..++.+++||||||+.+ |......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 35568999999999999999999998874 567778888776666778888999999999765 677788899
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKIS--GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~--~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
+.+|++++|+|++++....+...+..+... ++|+++|+||+|+...... ....+... ....+++++||++
T Consensus 85 ~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~-------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYHEL-------LPEAEPRMLSALD 156 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHHHT-------STTSEEEECCTTC
T ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHHHHh-------cCcCcEEEEeCCC
Confidence 999999999999998887777777777766 8999999999999764321 11111111 2335799999999
Q ss_pred CCChhHHHHHHHH
Q psy1758 216 GVGINKLLENISL 228 (1527)
Q Consensus 216 g~gI~eL~~~l~~ 228 (1527)
|.|+++|++.|..
T Consensus 157 g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 157 ERQVAELKADLLA 169 (301)
T ss_dssp HHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999863
No 90
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=3.2e-18 Score=188.41 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=119.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.||||||++.|..++..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 34578999999999999999999998887777778888887777777774 7889999999999999999999999999
Q ss_pred EEEeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++... ..|...+......++|+++|+||+|+.+... ......+.. .. .++++++||++|.|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~g~g 175 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE------AQ--DMYYLETSAKESDN 175 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH------HH--TCCEEECCTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCC
Confidence 9999998432 2233333333334789999999999964211 111111111 11 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
|+++|+.|....
T Consensus 176 v~~l~~~l~~~i 187 (201)
T 2ew1_A 176 VEKLFLDLACRL 187 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997544
No 91
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=186.85 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=121.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..++|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence 4578999999999999999999999888888888888888888888774 78999999999999999999999999999
Q ss_pred EEeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++... .+|...+......++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|+
T Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD------SL--GIPFLETSAKNATNV 166 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HT--TCCEEEECTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHH------Hc--CCcEEEEeCCCCCCH
Confidence 999998432 22333333333347899999999999753211 11111111 11 258999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|++|....
T Consensus 167 ~~l~~~l~~~i 177 (196)
T 3tkl_A 167 EQSFMTMAAEI 177 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 92
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.76 E-value=7.5e-18 Score=180.15 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=115.7
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 4478999999999999999999998887777777777777777777774 78999999999999999999999999999
Q ss_pred EEeCCCCCcH----HHHHHHHHHHH----cCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 146 VVAADDGVMP----QTREAIAHAKI----SGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 146 Vvda~~g~~~----qt~e~i~~~~~----~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
|+|+++.... .|.+.+..... .++|+++|+||+|+..... .+....+... ....+++++||++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD-------NGDYPYFETSAKDA 158 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-------TTCCCEEECCTTTC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-------cCCceEEEEeCCCC
Confidence 9999984332 23333333222 5789999999999963221 1111112110 12358999999999
Q ss_pred CChhHHHHHHHHH
Q psy1758 217 VGINKLLENISLQ 229 (1527)
Q Consensus 217 ~gI~eL~~~l~~~ 229 (1527)
.|++++++.|...
T Consensus 159 ~gi~~l~~~l~~~ 171 (177)
T 1wms_A 159 TNVAAAFEEAVRR 171 (177)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999754
No 93
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.76 E-value=3.8e-18 Score=181.22 Aligned_cols=157 Identities=19% Similarity=0.157 Sum_probs=115.3
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..+.++|+++|++|+|||||+++|....+.. ..+++ ......+.+++..+.+|||||++.|..++..+++.+|++++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~--~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTI--GFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCS--SEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcC--ccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 3466899999999999999999998877642 33333 33345566778899999999999999999999999999999
Q ss_pred EEeCCCCCcHH-HHHHHHHHHH----cCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQ-TREAIAHAKI----SGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~q-t~e~i~~~~~----~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++..... ....+..+.. .++|+++|+||+|+.+.. ..+....+..... . ...++++++||++|.|+
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL--K--DRKWQIFKTSATKGTGL 156 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC--T--TSCEEEEECCTTTCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhc--c--CCceEEEECcCCCCcCH
Confidence 99999864322 2333333322 578999999999997642 2223222221111 1 12358999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
++++++|...
T Consensus 157 ~~l~~~l~~~ 166 (171)
T 1upt_A 157 DEAMEWLVET 166 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 94
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.76 E-value=7.5e-18 Score=177.81 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=111.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
.+|+++|++|+|||||+++|.+..+.. ..+++. .....+...+..+.+|||||++.|..++..+++.+|++++|+|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 379999999999999999998877643 334333 34455667788999999999999999999999999999999999
Q ss_pred CCCCcHH-HHHHHHHHHH----cCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 150 DDGVMPQ-TREAIAHAKI----SGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 150 ~~g~~~q-t~e~i~~~~~----~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
++....+ ..+.+..+.. .+.|+++|+||+|+.+... .+....+..... ....++++++||++|.|+++++
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC----SSCCEEEEECBTTTTBTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccc----cCccEEEEEcccCCCcCHHHHH
Confidence 9853222 2233333322 3789999999999976422 222222211111 1123589999999999999999
Q ss_pred HHHHHH
Q psy1758 224 ENISLQ 229 (1527)
Q Consensus 224 ~~l~~~ 229 (1527)
++|...
T Consensus 154 ~~l~~~ 159 (164)
T 1r8s_A 154 DWLSNQ 159 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999753
No 95
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=1.6e-18 Score=214.66 Aligned_cols=161 Identities=20% Similarity=0.358 Sum_probs=128.0
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHH
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRA 134 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~ 134 (1527)
....++|+++|++|+|||||+++|.+.. ...+..+|+|.+.....+.+++.+++|||||| ++.|..++.
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 4567899999999999999999999775 56788889999988888889999999999999 799988876
Q ss_pred h-hccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 135 R-GAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 135 ~-~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
. +++.+|++++|+|++++...++..++..+...++|+|+|+||+|+.+.+. ++....+.... .....+|+++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 347 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF----QFLDYAPILF 347 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC----GGGTTSCEEE
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc----ccCCCCCEEE
Confidence 4 77999999999999999999999999999889999999999999976432 22222222211 1123469999
Q ss_pred eeccCCCChhHHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~~ 230 (1527)
+||++|.||+++|+.+....
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999998654
No 96
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=206.61 Aligned_cols=215 Identities=16% Similarity=0.084 Sum_probs=132.1
Q ss_pred HHHHHHhCCCccCccccCCHHHHHHHHHhcCCceee----cCCCCchhhhhhhcccCcccccccCCCEEEEEecCCCChh
Q psy1758 8 VIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHA----SKLNDPESFLLNEYNKNITAESLVRAPIVTIMGHVDHGKT 83 (1527)
Q Consensus 8 ~i~~l~~~g~~~~~~~~l~~~~~~~~a~~~g~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~r~~~V~IvG~~~~GKT 83 (1527)
..+.++..+.....++.++.+.....++.+...... ........................+.++|+++|++|+|||
T Consensus 100 ~~n~~~e~~~~~~~~~~i~~~y~s~~A~lYr~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKS 179 (329)
T 3o47_A 100 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKT 179 (329)
T ss_dssp HHHHHHHTCSSCCTTCCHHHHHHSHHHHHHHHHHHHHHTTCCCCSCC-----CCCCC------CCSEEEEEEESTTSSHH
T ss_pred HHHHHHHhcCCCCCCCCccccccchHHHHHhhhccccccCCccccccccccccCCCCcccccccCcceEEEECCCCccHH
Confidence 445555555556666777776666666554422110 0000000000000011111122345679999999999999
Q ss_pred HHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHH-HHHHH
Q psy1758 84 SLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT-REAIA 162 (1527)
Q Consensus 84 SLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt-~e~i~ 162 (1527)
||+++|.+..+.... + |++.....+...+..+.||||||++.|..++..+++.+|++|+|+|+++....+. .+.+.
T Consensus 180 sLl~~l~~~~~~~~~-p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~ 256 (329)
T 3o47_A 180 TILYKLKLGEIVTTI-P--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM 256 (329)
T ss_dssp HHHHHTCSSCCEEEE-E--ETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcc-c--ccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHH
Confidence 999999988764332 3 4445556677888899999999999999999999999999999999987543322 22222
Q ss_pred HH-H---HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 163 HA-K---ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 163 ~~-~---~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
.+ . ..++|+++|+||+|+.+.. ..++...+..... ....++++++||++|.||++||+.|...
T Consensus 257 ~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~vSAk~g~gi~el~~~l~~~ 324 (329)
T 3o47_A 257 RMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RHRNWYIQATCATSGDGLYEGLDWLSNQ 324 (329)
T ss_dssp HHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTC----CSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhh----hcCCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 22 2 2378999999999997643 2233332221111 1234689999999999999999999754
No 97
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=187.01 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=112.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.||||||++.|..++..+++.+|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 34578999999999999999999988876666677777777777777764 7899999999999999999999999999
Q ss_pred EEEeCCCCCcHHH----HHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+. .+.+......++|+++|+||+|+.+... ......+.. .+ ...+++++||++|.|
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~------~~-~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQ------QI-TGMRFCEASAKDNFN 176 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------TS-TTCEEEECBTTTTBS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH------hc-CCCeEEEEeCCCCCC
Confidence 9999998543332 2333333334789999999999965321 111111111 11 235899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
++++++.|...
T Consensus 177 i~~l~~~l~~~ 187 (192)
T 2il1_A 177 VDEIFLKLVDD 187 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 98
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=5.8e-18 Score=181.54 Aligned_cols=156 Identities=20% Similarity=0.217 Sum_probs=109.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
.+..+|+++|++|+|||||+++|.+..+. ....++++.+.....+..++. .+.+|||||++.|..++..+++.+|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 35578999999999999999999988874 455677777777666666765 789999999999999999999999999
Q ss_pred EEEEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 144 VLVVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 144 IlVvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
++|+|+++.... .|.+.+......++|+++|+||+|+.+... ......+.. .+ .++++++||++|.
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~ 159 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK------EY--GLPFMETSAKTGL 159 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHH------HH--TCCEEECCTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHH------Hc--CCeEEEEeCCCCC
Confidence 999999984332 222222222235789999999999975321 111111111 11 2489999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|+++++++|....
T Consensus 160 gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 160 NVDLAFTAIAKEL 172 (180)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997543
No 99
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.76 E-value=1.5e-18 Score=184.49 Aligned_cols=150 Identities=21% Similarity=0.249 Sum_probs=109.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH------HHHHhhcc--cc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT------AMRARGAK--VT 140 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~------~~~~~~~~--~a 140 (1527)
.++|+++|++|+|||||+++|.+..+..+..+++|.+.....+.+++..+.+|||||++.|. .+...+++ .+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 46899999999999999999998877677778888877777777888899999999988773 34445554 79
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|++++|+|+++ ......++..+...++|+++|+||+|+...... .....+. ..++ ++++++||++|.|+
T Consensus 83 ~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~--~~~~~~SA~~~~~v 152 (165)
T 2wji_A 83 DLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE------KILG--VKVVPLSAAKKMGI 152 (165)
T ss_dssp SEEEEEEETTC--HHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH------HHHT--SCEEECBGGGTBSH
T ss_pred CEEEEEecCCc--hhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH------HHhC--CCEEEEEcCCCCCH
Confidence 99999999987 233334455555678999999999998542110 0011111 1122 58999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++|+.|..
T Consensus 153 ~~l~~~l~~ 161 (165)
T 2wji_A 153 EELKKAISI 161 (165)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 100
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.75 E-value=6.1e-18 Score=198.66 Aligned_cols=157 Identities=25% Similarity=0.384 Sum_probs=127.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeC-CeEEEEEeCCCh----------hhHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTN-HGSITFLDTPGH----------EAFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~----------e~f~~~~~ 134 (1527)
+.+..|+++|++|+|||||+|+|.+..+. .+..+++|++.....+..+ +.+++||||||+ +.|.....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 45568999999999999999999998874 6778889998888888888 889999999997 34557777
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHH-HHHHHHcCCCEEEEEEcccCC-cch-hHHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREA-IAHAKISGVPLIVAINKIDKL-DIN-LDRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~-i~~~~~~~vpiIvviNKiDl~-~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
.++..+|++++|+|++++...++... +..+...++|+++|+||+|+. +.. .......+.. .++...+++++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~------~~~~~~~i~~v 161 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHK------KHPELTEIVPI 161 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHH------HCTTCCCEEEC
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHH------hccCCCeEEEE
Confidence 88999999999999999988888887 677777899999999999997 322 2222222222 12234689999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.|+++|++.|...
T Consensus 162 SA~~g~gv~~L~~~l~~~ 179 (308)
T 3iev_A 162 SALKGANLDELVKTILKY 179 (308)
T ss_dssp BTTTTBSHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHh
Confidence 999999999999999754
No 101
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.75 E-value=3.3e-18 Score=190.74 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=124.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEE-eCCeEEEEEeCCC----------hhhHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVV-TNHGSITFLDTPG----------HEAFTAMR 133 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~-~~~~~i~~iDTPG----------~e~f~~~~ 133 (1527)
.+.++|+++|++|+|||||+++|.+... ..+..+++|.+.....+. .++..+.|||||| ++.|..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 3568999999999999999999998862 566777888887777665 5567899999999 56666666
Q ss_pred Hhhccc---cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhccccc--ccCCCCc
Q psy1758 134 ARGAKV---TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPE--EYGGASP 207 (1527)
Q Consensus 134 ~~~~~~---aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~--~~~~~~~ 207 (1527)
..+++. +|++++|+|++++.......++..+...++|+++|+||+|+...... .....+........ ......+
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 186 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLT 186 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCe
Confidence 665544 88999999999988888888888888889999999999999764321 11221111110000 0124568
Q ss_pred EEEeeccCCCChhHHHHHHHHH
Q psy1758 208 FISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 208 v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
++++||++|.|+++|++.|...
T Consensus 187 ~~~~SA~~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 187 VQLFSALKRTGLDDAHALIESW 208 (223)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHH
T ss_pred EEEeecCCCcCHHHHHHHHHHh
Confidence 9999999999999999999754
No 102
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=186.25 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=110.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.||||||+++|..++..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45578999999999999999999998876666666666776677777764 8899999999999999999999999999
Q ss_pred EEEeCCCCCcHHH-HHHHHHHH---HcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGVMPQT-REAIAHAK---ISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~~~qt-~e~i~~~~---~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|+++....+. ..++..+. ..++|+++|+||+|+.+.. .++. ..+.. .+ +..+++++||++|.
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~-~~~~~------~~-~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEA-QSLAE------HY-DILCAIETSAKDSS 178 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHH-HHHHH------HT-TCSEEEECBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHH-HHHHH------Hc-CCCEEEEEeCCCCC
Confidence 9999997432211 12222222 2568999999999996521 1111 11111 11 11289999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
||+++|++|....
T Consensus 179 gi~~l~~~l~~~i 191 (201)
T 2hup_A 179 NVEEAFLRVATEL 191 (201)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997654
No 103
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.75 E-value=3e-18 Score=181.78 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=109.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 4478999999999999999999998877666777777776666666654 68899999999999999999999999999
Q ss_pred EEeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+ |.+.+......++|+++|+||+|+.+.... +....+.. .+ .++++++||++|.|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE------SV--GAKHYHTSAKQNKGI 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEEEBTTTTBSH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHH------Hc--CCeEEEecCCCCCCH
Confidence 99999843222 222233333357899999999999653211 11111111 11 258999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
++++++|...
T Consensus 157 ~~l~~~l~~~ 166 (170)
T 1z08_A 157 EELFLDLCKR 166 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 104
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=3.7e-18 Score=185.00 Aligned_cols=157 Identities=23% Similarity=0.222 Sum_probs=110.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|.+..+. ...+++ ......+.+++..+.+|||||+++|..++..+++.+|++++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTI--GSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCS--CSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCC--ccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 45689999999999999999999987765 333322 233445566788999999999999999988999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+ ....+..+. ..+.|+++|+||+|+.+.. ..+....+..... . ...++++++||++|.|++
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~--~--~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI--K--DHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC--C--SSCEEEEECBTTTTBTHH
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhh--c--CCCcEEEEccCCCCcCHH
Confidence 9999864322 233333333 2578999999999997632 2222222221101 1 123589999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
+++++|....
T Consensus 167 ~l~~~l~~~~ 176 (187)
T 1zj6_A 167 QGLEWMMSRL 176 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997653
No 105
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=191.37 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=105.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 4568999999999999999999998887555555555555555555555 46899999999999999999999999999
Q ss_pred EEEeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchhH----HHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 145 LVVAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINLD----RIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 145 lVvda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~----~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+|+|+++....+ |.+.+......++|+++|+||+|+.+.... .+....... ....+ .++++++||++|
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~--~~~~~--~~~~~~~SA~~g 181 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK--LAMTY--GALFCETSAKDG 181 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH--HHHHH--TCEEEECCTTTC
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHH--HHHHc--CCeEEEeeCCCC
Confidence 999999844322 222333333347899999999998632110 000000000 01112 258999999999
Q ss_pred CChhHHHHHHHHH
Q psy1758 217 VGINKLLENISLQ 229 (1527)
Q Consensus 217 ~gI~eL~~~l~~~ 229 (1527)
.||+++++.|...
T Consensus 182 ~gv~el~~~l~~~ 194 (199)
T 2p5s_A 182 SNIVEAVLHLARE 194 (199)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999754
No 106
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.75 E-value=2.5e-18 Score=184.12 Aligned_cols=154 Identities=16% Similarity=0.082 Sum_probs=113.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC---eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH---GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~---~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ..+.+|||||++.|..++..+++.+|+++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 457899999999999999999998887655555555566666667765 58999999999999999999999999999
Q ss_pred EEEeCCCCCcH----HHHHHHHHHHH--cCCC-EEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 145 LVVAADDGVMP----QTREAIAHAKI--SGVP-LIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 145 lVvda~~g~~~----qt~e~i~~~~~--~~vp-iIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
+|+|+++.... .|...+..... .+.| +++|+||+|+.+... .+....+.. .+ .++++++||++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~ 156 (178)
T 2hxs_A 85 LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ------EN--GFSSHFVSAKT 156 (178)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH------HH--TCEEEEECTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH------Hc--CCcEEEEeCCC
Confidence 99999984332 22222222111 2566 899999999965211 111111111 11 25899999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.|++++|++|...
T Consensus 157 ~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 157 GDSVFLCFQKVAAE 170 (178)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999754
No 107
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=183.49 Aligned_cols=155 Identities=19% Similarity=0.140 Sum_probs=117.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ..+.||||||++.|..++..+++.+|++++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 87 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 87 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEE
Confidence 457899999999999999999999888877888888888888888887 578999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH-HHHHHHH--cCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 146 VVAADDGVMPQTRE-AIAHAKI--SGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 146 Vvda~~g~~~qt~e-~i~~~~~--~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+|+++....+... ++..+.. .++|+++|+||+|+.+..... ....+.. .+ .++++++||++|.|++
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 88 VYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAG------QM--GIQLFETSAKENVNVE 159 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH------HH--TCCEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHH------Hc--CCeEEEEECCCCCCHH
Confidence 99999843332222 2222222 358999999999987532111 1111111 11 2489999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
+++++|....
T Consensus 160 ~l~~~l~~~~ 169 (181)
T 3tw8_B 160 EMFNCITELV 169 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 108
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.75 E-value=1.1e-17 Score=180.81 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=114.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|.+.. .....+++. .....+.+++..+.+|||||++.|...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 456899999999999999999999877 434444333 33445666788999999999999999999999999999999
Q ss_pred EeCCCCCcHHH-HHHHHHHH----HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQT-REAIAHAK----ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt-~e~i~~~~----~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+. .+.+..+. ..++|+++|+||+|+.+... .+....+.... .....++++++||++|.|++
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDS----IRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG----CCSSCEEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhh----ccCCceEEEEeeCCCCCCHH
Confidence 99998543222 23333332 24789999999999976422 22222221110 01124589999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
+++++|....
T Consensus 169 ~l~~~l~~~i 178 (186)
T 1ksh_A 169 PGIDWLLDDI 178 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997543
No 109
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.75 E-value=2.5e-18 Score=185.22 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=89.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ..+.||||||++.|..++..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 357899999999999999999998887766777888888777777777 578999999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQT-REAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+. ..++..+.. .++|+++|+||+|+.+... ......+.. .+ .++++++||++|.|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL------DY--GIKFMETSAKANINV 158 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH------HH--TCEEEECCC---CCH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHH------Hc--CCeEEEEeCCCCCCH
Confidence 999998432222 222333332 4789999999999975321 111111111 12 258999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|+.|....
T Consensus 159 ~~l~~~l~~~i 169 (183)
T 2fu5_C 159 ENAFFTLARDI 169 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997554
No 110
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.75 E-value=5.5e-18 Score=181.20 Aligned_cols=154 Identities=17% Similarity=0.127 Sum_probs=113.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|...+..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEE
Confidence 457899999999999999999999887655555555555455555555 478999999999999999999999999999
Q ss_pred EEeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+ |...+......+.|+++|+||+|+.+.... +....+.. .+ .++++++||++|.|+
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 94 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE------EN--GLLFLEASAKTGENV 165 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HT--TCEEEECCTTTCTTH
T ss_pred EEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCCH
Confidence 99999853322 222233333357899999999999642211 11111111 11 258999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|++|...
T Consensus 166 ~~l~~~l~~~ 175 (179)
T 1z0f_A 166 EDAFLEAAKK 175 (179)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 111
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.75 E-value=1.9e-18 Score=197.42 Aligned_cols=148 Identities=21% Similarity=0.250 Sum_probs=119.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH----------HHHhhc--
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA----------MRARGA-- 137 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~----------~~~~~~-- 137 (1527)
++|+++|++|+|||||+|+|++.....+..+|+|.+.....+.+++..+.||||||+..|.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 58999999999999999999999888889999999999999999999999999999877753 444555
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
..+|++|+|+|+++ .........++...++|+++|+||+|+...... .....+.. .+ .+|++++||++|
T Consensus 82 ~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~------~l--g~~vi~~SA~~g 151 (256)
T 3iby_A 82 LEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLES------LL--GCSVIPIQAHKN 151 (256)
T ss_dssp SCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHH------HH--CSCEEECBGGGT
T ss_pred CCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHH------Hc--CCCEEEEECCCC
Confidence 78999999999998 445556667777789999999999998642211 11111111 12 259999999999
Q ss_pred CChhHHHHHHH
Q psy1758 217 VGINKLLENIS 227 (1527)
Q Consensus 217 ~gI~eL~~~l~ 227 (1527)
.|+++|++.|.
T Consensus 152 ~gi~el~~~i~ 162 (256)
T 3iby_A 152 IGIPALQQSLL 162 (256)
T ss_dssp BSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999995
No 112
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.75 E-value=4.7e-18 Score=181.78 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=117.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4478999999999999999999988887777788888887777777774 78999999999999999999999999999
Q ss_pred EEeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++... ..|...+......++|+++|+||+|+.+.... ........ .+ .++++++||++|.|+
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK------EL--NVMFIETSAKAGYNV 164 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHH------HH--TCEEEEEBTTTTBSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHH------Hc--CCeEEEEeCCCCCCH
Confidence 999987332 12222233323357899999999999653211 11111111 11 258999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++++.|..
T Consensus 165 ~~l~~~l~~ 173 (179)
T 2y8e_A 165 KQLFRRVAA 173 (179)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=1.5e-17 Score=180.96 Aligned_cols=156 Identities=22% Similarity=0.284 Sum_probs=113.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~ 134 (1527)
.+.++|+++|++|+|||||+++|.+..+ .....+++|.+.....+ +.++.|||||| ++.|..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 3578999999999999999999998864 33455566666554433 34799999999 889988888
Q ss_pred hhcccc---CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 135 RGAKVT---DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 135 ~~~~~a---D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.+++.+ |++++|+|++++......+.+..+...++|+++|+||+|+.+... .....++..... .....++++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 173 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----IDPEDELIL 173 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----CCTTSEEEE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHc----ccCCCceEE
Confidence 777666 999999999998888777777777778999999999999976432 222222221111 123468999
Q ss_pred eeccCCCChhHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~ 229 (1527)
+||++|.|+++++++|...
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred EEccCCCCHHHHHHHHHHH
Confidence 9999999999999999643
No 114
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=6.9e-18 Score=186.46 Aligned_cols=157 Identities=20% Similarity=0.171 Sum_probs=117.7
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
..+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ..+.||||||++.|..++..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34568999999999999999999999888777777788777777777777 4789999999999998888899999999
Q ss_pred EEEEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 144 VLVVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 144 IlVvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
++|+|+++.... .|...+......++|+++|+||+|+...... .....+.. .++ ++++++||++|.|
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~Sa~~~~g 168 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK------ELG--IPFIESSAKNDDN 168 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHH------HHT--CCEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHH------HcC--CEEEEEeCCCCCC
Confidence 999999984322 2222232222347899999999999532211 11111211 111 4899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
|++++++|....
T Consensus 169 i~~l~~~l~~~~ 180 (213)
T 3cph_A 169 VNEIFFTLAKLI 180 (213)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998554
No 115
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.75 E-value=4.6e-18 Score=186.57 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=105.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|.+..+.. ..+ |.......+.+++..+.+|||||++.|..++..+++.+|++++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVP--TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------C--CCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCC--CCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 456789999999999999999998876532 222 22222356677888999999999999999998999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcc--------cccccCCCCcEEEee
Q psy1758 147 VAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQV--------IPEEYGGASPFISIS 212 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~--------~~~~~~~~~~v~~iS 212 (1527)
+|+++....+ ....+..+. ..++|+++|+||+|+.+.. .++....+..... ........++++++|
T Consensus 100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 179 (198)
T 1f6b_A 100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 179 (198)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECB
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEE
Confidence 9999854322 222333332 3579999999999997532 2222222211110 000011346899999
Q ss_pred ccCCCChhHHHHHHH
Q psy1758 213 AKTGVGINKLLENIS 227 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~ 227 (1527)
|++|.|++++|++|.
T Consensus 180 A~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 180 VLKRQGYGEGFRWMA 194 (198)
T ss_dssp TTTTBSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 999999999999986
No 116
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.74 E-value=4.8e-18 Score=185.09 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=110.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|.+..+.. ..+ |.......+.+++..+.+|||||++.|..++..+++.+|++++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQP--TWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCC--CCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-ccc--CCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 466799999999999999999999877632 222 22223456677889999999999999999988999999999999
Q ss_pred EeCCCCCcHHH-HHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhccccc---ccCCCCcEEEeeccCCC
Q psy1758 147 VAADDGVMPQT-REAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPE---EYGGASPFISISAKTGV 217 (1527)
Q Consensus 147 vda~~g~~~qt-~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~---~~~~~~~v~~iSAktg~ 217 (1527)
+|+++....+. ...+..+. ..+.|+++|+||+|+.+.. .++..+.+........ .....++++++||++|.
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 177 (190)
T 1m2o_B 98 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN 177 (190)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTB
T ss_pred EECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCC
Confidence 99998543222 22232222 3578999999999997632 2222222111100000 01134689999999999
Q ss_pred ChhHHHHHHH
Q psy1758 218 GINKLLENIS 227 (1527)
Q Consensus 218 gI~eL~~~l~ 227 (1527)
|++++|++|.
T Consensus 178 gi~~l~~~l~ 187 (190)
T 1m2o_B 178 GYLEAFQWLS 187 (190)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999985
No 117
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=4.9e-18 Score=179.78 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=111.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 457899999999999999999998877655555555555444455554 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHH---HcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQT-REAIAHAK---ISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~---~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+. ..++..+. ..++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD------DN--SLLFMETSAKTSMNV 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEECCTTTCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHH------Hc--CCeEEEEeCCCCCCH
Confidence 999998433222 22223332 246889999999998653211 11111111 11 258999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
++++++|..
T Consensus 157 ~~l~~~i~~ 165 (170)
T 1r2q_A 157 NEIFMAIAK 165 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 118
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.74 E-value=5.1e-18 Score=181.99 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=104.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC---CeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN---HGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~---~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.++ ...+.+|||||++.|...+..+++.+|+++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 45789999999999999999999988776666666666666666655 247899999999999999999999999999
Q ss_pred EEEeCCCCCcHH----HHHHHHHHHH----cCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 145 LVVAADDGVMPQ----TREAIAHAKI----SGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 145 lVvda~~g~~~q----t~e~i~~~~~----~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
+|+|+++....+ |...+..... .++|+++|+||+|+..... ......+... ....+++++||
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~-------~~~~~~~~~Sa 159 (182)
T 1ky3_A 87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS-------LGDIPLFLTSA 159 (182)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH-------TTSCCEEEEBT
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh-------cCCCeEEEEec
Confidence 999999843322 2222222221 5789999999999964321 1111112110 12358999999
Q ss_pred cCCCChhHHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQA 230 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~~ 230 (1527)
++|.|+++++++|....
T Consensus 160 ~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 160 KNAINVDTAFEEIARSA 176 (182)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999997543
No 119
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.74 E-value=1.9e-17 Score=179.42 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=115.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEE-EEEEEeCC-----------eEEEEEeCCChhhHHHHHHh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIG-AYNVVTNH-----------GSITFLDTPGHEAFTAMRAR 135 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~-~~~~~~~~-----------~~i~~iDTPG~e~f~~~~~~ 135 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.. ...+..++ ..+.||||||++.|..++..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 89 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHH
Confidence 4578999999999999999999998876666666666665 44555553 47999999999999999999
Q ss_pred hccccCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcE
Q psy1758 136 GAKVTDIVVLVVAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 136 ~~~~aD~~IlVvda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
+++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+.+... ......+.. .+ .+++
T Consensus 90 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~ 161 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE------KY--GIPY 161 (195)
T ss_dssp TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH------HH--TCCE
T ss_pred HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH------Hc--CCCE
Confidence 9999999999999998443322 222232322 5789999999999965211 111111111 11 2489
Q ss_pred EEeeccCCCChhHHHHHHHHHH
Q psy1758 209 ISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
+++||++|.|++++++.|....
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998654
No 120
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.74 E-value=7.6e-18 Score=183.02 Aligned_cols=159 Identities=17% Similarity=0.199 Sum_probs=113.5
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
...+.++|+++|++|+|||||+++|.+.. +.....+++ ......+.+++..+.||||||++.|..++..+++.+|++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTI--GFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCS--SEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcc--ceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 34567899999999999999999999877 344443333 344556677788999999999999999999999999999
Q ss_pred EEEEeCCCCCcH-HHHHHHHHHHH------cCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 144 VLVVAADDGVMP-QTREAIAHAKI------SGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 144 IlVvda~~g~~~-qt~e~i~~~~~------~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
++|+|+++.... .....+..+.. .++|+++|+||+|+.+.. .++....+..... ....++++++||++
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI----KDKPWHICASDAIK 170 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGC----CSSCEEEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhc----cCCceEEEEccCCC
Confidence 999999984322 22223333322 478999999999997632 2222222211111 01245899999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.|+++++++|...
T Consensus 171 ~~gi~~l~~~l~~~ 184 (190)
T 2h57_A 171 GEGLQEGVDWLQDQ 184 (190)
T ss_dssp TBTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999999754
No 121
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.74 E-value=3.6e-18 Score=181.03 Aligned_cols=154 Identities=20% Similarity=0.167 Sum_probs=110.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 468999999999999999999998887677777777777677777653 789999999999998888899999999999
Q ss_pred EeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 147 VAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 147 vda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+++.... .|...+......+.|+++|+||+|+..... .+....+.. .+ .++++++||++|.|+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK------EL--GIPFIESSAKNDDNVNE 154 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH------HH--TCCEEECBTTTTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHH------Hc--CCeEEEEECCCCCCHHH
Confidence 999984332 222222222234789999999999953221 111111211 11 24899999999999999
Q ss_pred HHHHHHHHH
Q psy1758 222 LLENISLQA 230 (1527)
Q Consensus 222 L~~~l~~~~ 230 (1527)
+++.|....
T Consensus 155 l~~~l~~~~ 163 (170)
T 1g16_A 155 IFFTLAKLI 163 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997553
No 122
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.74 E-value=5.7e-18 Score=178.56 Aligned_cols=153 Identities=23% Similarity=0.250 Sum_probs=110.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.. ....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 34789999999999999999999888765555544432 2444555654 58899999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHH----HHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQT-REAI----AHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i----~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++....+. ...+ ......+.|+++|+||+|+.+... ......+.. .+ .++++++||++|.|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 152 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE------EW--GCPFMETSAKSKTM 152 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HH--TSCEEEECTTCHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH------Hh--CCCEEEecCCCCcC
Confidence 999998432211 1122 222235799999999999864221 111111111 11 24899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
++++++.|...
T Consensus 153 i~~l~~~l~~~ 163 (167)
T 1kao_A 153 VDELFAEIVRQ 163 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 123
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.74 E-value=5.2e-18 Score=182.92 Aligned_cols=156 Identities=24% Similarity=0.215 Sum_probs=111.0
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
....+..+|+++|++|+|||||+++|.+..+. .....+.+ ...+.+++..+.||||||++.|..++..+++.+|+
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----VEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSS----CEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCcee----eEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 34456789999999999999999999988762 12222222 34456678899999999999999999999999999
Q ss_pred EEEEEeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 143 VVLVVAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 143 ~IlVvda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+++|+|+++....+ ..+.+..+. ..++|+++|+||+|+.+.. ..++...+..... ....++++++||++|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI----KDHQWHIQACCALTG 167 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC----CSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccc----cCCceEEEEccCCCC
Confidence 99999999864333 333333333 3578999999999997632 2222222211111 112358999999999
Q ss_pred CChhHHHHHHH
Q psy1758 217 VGINKLLENIS 227 (1527)
Q Consensus 217 ~gI~eL~~~l~ 227 (1527)
.|+++++++|.
T Consensus 168 ~gi~~l~~~l~ 178 (181)
T 2h17_A 168 EGLCQGLEWMM 178 (181)
T ss_dssp BTHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 99999999985
No 124
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.74 E-value=7.8e-18 Score=177.90 Aligned_cols=154 Identities=25% Similarity=0.281 Sum_probs=110.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....+++.... ...+..++ ..+.||||||++.|..++..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 346899999999999999999998877655555544433 23344443 378899999999999999999999999999
Q ss_pred EEeCCCCCc----HHHHHHHHH-HHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVM----PQTREAIAH-AKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~----~qt~e~i~~-~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++... ..+.+.+.. ....++|+++|+||+|+.+... ......+.. .+ ...+++++||++|.|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~-~~~~~~~~Sa~~~~g 153 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR------QW-CNCAFLESSAKSKIN 153 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HT-TSCEEEECBTTTTBS
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH------Hc-cCCcEEEecCCCCCC
Confidence 999998322 122222222 2234799999999999965321 111111111 11 235899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
+++++++|...
T Consensus 154 i~~l~~~l~~~ 164 (167)
T 1c1y_A 154 VNEIFYDLVRQ 164 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 125
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.74 E-value=7.8e-18 Score=180.40 Aligned_cols=155 Identities=18% Similarity=0.165 Sum_probs=113.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....+++..... ..+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 35578999999999999999999998776666665555544 55566664 7889999999999988899999999999
Q ss_pred EEEeCCCCCcH----HHHHHH-HHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGVMP----QTREAI-AHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~~~----qt~e~i-~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|+++.... .|...+ ......++|+++|+||+|+.+... ......+.. .+ .++++++||++|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~ 157 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA------SH--HVAYFEASAKLRL 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEECBTTTTB
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH------Hc--CCeEEEecCCCCC
Confidence 99999983321 122122 223345789999999999965321 111111111 11 3589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|+++++++|....
T Consensus 158 gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 158 NVDEAFEQLVRAV 170 (181)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
No 126
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.74 E-value=1.9e-17 Score=178.75 Aligned_cols=154 Identities=20% Similarity=0.241 Sum_probs=110.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
.+.++|+++|++|+|||||+++|.+..+. ..+..|. ....+.+++..+.+|||||++.|..++..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGF----NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTE----EEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCe----EEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 35689999999999999999999887642 1222232 234556678899999999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHH----HHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQT-REAIAHA----KISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~----~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+. .+.+..+ ...++|+++|+||+|+.+... ++....+.... .....++++++||++|.|+
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHT----IRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG----CCSSCEEEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchh----ccCCceEEEEccCCCCCCH
Confidence 999998543222 2233322 125789999999999976432 22222221110 0112358999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++|++|..
T Consensus 166 ~~l~~~l~~ 174 (181)
T 1fzq_A 166 QDGMNWVCK 174 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999964
No 127
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=1e-17 Score=177.28 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=112.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.+|||||++.|..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 468999999999999999999998876666666666665555666554 789999999999999999999999999999
Q ss_pred EeCCCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh-----HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 147 VAADDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL-----DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 147 vda~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~-----~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+++....+.. .++..+. ..++|+++|+||+|+..... ......+.. .+ .++++++||++|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~ 154 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE------EK--GLLFFETSAKTGE 154 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH------HH--TCEEEECCTTTCT
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHH------Hc--CCEEEEEeCCCCC
Confidence 999984332222 2222222 24789999999999965311 111111111 11 2489999999999
Q ss_pred ChhHHHHHHHH
Q psy1758 218 GINKLLENISL 228 (1527)
Q Consensus 218 gI~eL~~~l~~ 228 (1527)
|+++++++|..
T Consensus 155 gi~~l~~~l~~ 165 (170)
T 1ek0_A 155 NVNDVFLGIGE 165 (170)
T ss_dssp THHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 99999999863
No 128
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.74 E-value=1.6e-17 Score=186.28 Aligned_cols=161 Identities=18% Similarity=0.262 Sum_probs=114.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCCh------hh----HHHHHHhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH------EA----FTAMRARG 136 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~------e~----f~~~~~~~ 136 (1527)
.+.++|+++|++|+|||||+++|.+..+.....+++|.+.....+...+..+.||||||+ +. |.... ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~-~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT-AL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHH-Hh
Confidence 467899999999999999999999988877777888888888888888889999999998 54 33333 34
Q ss_pred ccccCEEEEEEeCCCCCc---HHHHHHHHHHHHc--CCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 137 AKVTDIVVLVVAADDGVM---PQTREAIAHAKIS--GVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g~~---~qt~e~i~~~~~~--~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
+..+|++++|+|+++... ..+.+++..+... ++|+++|+||+|+.+... .......... .....+..+++++
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQ--ILDNVKNPIKFSS 183 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHH--HHHHCCSCEEEEE
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHH--HHHhcCCCceEEE
Confidence 678899999999998644 3345556666554 899999999999975321 1111101100 1111122358999
Q ss_pred eeccCCCChhHHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~~ 230 (1527)
+||++|.||+++|++|....
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHH
Confidence 99999999999999997543
No 129
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.74 E-value=1.1e-17 Score=185.44 Aligned_cols=159 Identities=25% Similarity=0.234 Sum_probs=107.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC---CeEEEEEeCCChhhHHH-HHHhhccccCE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN---HGSITFLDTPGHEAFTA-MRARGAKVTDI 142 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~---~~~i~~iDTPG~e~f~~-~~~~~~~~aD~ 142 (1527)
.+.++|+++|++|+|||||+++|.+..+..... +++.+... +.++ +..+.+|||||++.|.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 356899999999999999999999888654443 44444443 5555 56899999999999998 78888999999
Q ss_pred EEEEEeCCCCC--cHHHHHHHHHH------HHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcc----------------
Q psy1758 143 VVLVVAADDGV--MPQTREAIAHA------KISGVPLIVAINKIDKLDIN-LDRIKQDLISEQV---------------- 197 (1527)
Q Consensus 143 ~IlVvda~~g~--~~qt~e~i~~~------~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~---------------- 197 (1527)
+|+|+|+++.. .....+.|... ...++|+++|+||+|+.... .......+.....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999998711 11122222221 12468999999999997643 2222222211000
Q ss_pred -----ccc---------ccCCCCcEEEeeccCC------CChhHHHHHHHH
Q psy1758 198 -----IPE---------EYGGASPFISISAKTG------VGINKLLENISL 228 (1527)
Q Consensus 198 -----~~~---------~~~~~~~v~~iSAktg------~gI~eL~~~l~~ 228 (1527)
... .+...++|+++||++| .||+++|++|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 212 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence 000 1111578999999999 999999999864
No 130
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.74 E-value=1.5e-17 Score=179.13 Aligned_cols=154 Identities=20% Similarity=0.299 Sum_probs=114.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|....+.....++++... ...+..++. .+.+|||||++.|..++..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4567899999999999999999998887766666666555 455556665 4667999999999999999999999999
Q ss_pred EEEeCCCCCc----HHHHHHH-HHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeecc-CC
Q psy1758 145 LVVAADDGVM----PQTREAI-AHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAK-TG 216 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i-~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAk-tg 216 (1527)
+|+|+++... ..|...+ ......++|+++|+||+|+.+... ......+.. .++ ++++++||+ +|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~------~~~--~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT------KYN--IPYIETSAKDPP 166 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH------HHT--CCEEEEBCSSSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH------HhC--CeEEEeccCCCC
Confidence 9999998422 2222222 223346789999999999865211 111111111 122 589999999 99
Q ss_pred CChhHHHHHHHHH
Q psy1758 217 VGINKLLENISLQ 229 (1527)
Q Consensus 217 ~gI~eL~~~l~~~ 229 (1527)
.|++++|+.|...
T Consensus 167 ~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 167 LNVDKTFHDLVRV 179 (183)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999754
No 131
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.74 E-value=1.7e-17 Score=181.12 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=115.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--------------------------------
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-------------------------------- 115 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-------------------------------- 115 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.++....+..++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 467899999999999999999999888766667776666666666654
Q ss_pred -------eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHH-HHHHHH-HcCCCEEEEEEcccCCcc--h
Q psy1758 116 -------GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTRE-AIAHAK-ISGVPLIVAINKIDKLDI--N 184 (1527)
Q Consensus 116 -------~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e-~i~~~~-~~~vpiIvviNKiDl~~~--~ 184 (1527)
..+.||||||++.|...+..+++.+|++++|+|++++...+... ++..+. ..+.|+++|+||+|+... .
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~ 165 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVD 165 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSC
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCC
Confidence 67899999999999999999999999999999999854333322 223333 246899999999994221 1
Q ss_pred hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
..+... +.. .+ .++++++||++|.|+++++++|....
T Consensus 166 ~~~~~~-~~~------~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 166 ILEVQK-YAQ------DN--NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHHH-HHH------HT--TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHH-HHH------Hc--CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 122211 111 11 25899999999999999999997543
No 132
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.74 E-value=3.9e-17 Score=177.34 Aligned_cols=156 Identities=24% Similarity=0.293 Sum_probs=118.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHHh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRAR 135 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~~ 135 (1527)
...++|+++|++|+|||||+++|.+... .....+++|.+...... +.++.+||||| ++.|..++..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 4567999999999999999999998874 44555666665544332 45789999999 7888887776
Q ss_pred hcccc---CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEe
Q psy1758 136 GAKVT---DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 136 ~~~~a---D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
+++.+ |++++|+|++++........+..+...++|+++|+||+|+.+..... ....+... . ...+.++++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~ 173 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKV---F-SKYGEYTIIPT 173 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH---H-HSSCCSCEEEC
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHH---H-hhcCCCceEEE
Confidence 66555 99999999999888888787888888899999999999997543222 22222111 1 11134689999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.||+++|++|...
T Consensus 174 Sa~~~~gv~~l~~~l~~~ 191 (195)
T 3pqc_A 174 SSVTGEGISELLDLISTL 191 (195)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHH
Confidence 999999999999999754
No 133
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=7.6e-18 Score=180.49 Aligned_cols=149 Identities=21% Similarity=0.279 Sum_probs=111.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH----HH----HHHhhcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF----TA----MRARGAK 138 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f----~~----~~~~~~~ 138 (1527)
++.+|+++|++|+|||||+++|.+..+ ..+..+++|.+.....+.+++..+.+|||||++++ .. ....+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 356899999999999999999998764 45667888888877888888889999999997542 11 1224578
Q ss_pred ccCEEEEEEeCCCCCcHHHHHHHHHHHH---cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 139 VTDIVVLVVAADDGVMPQTREAIAHAKI---SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~e~i~~~~~---~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
.+|++++|+|+++....+..+++..+.. .++|+++|+||+|+.+... ..... ...+++++||++
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------~~~~~--~~~~~~~~SA~~ 149 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----------GMSEV--NGHALIRLSART 149 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------EEEEE--TTEEEEECCTTT
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----------hhhhc--cCCceEEEeCCC
Confidence 9999999999998654433344433332 3689999999999854210 00111 235899999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.|++++|+.|...
T Consensus 150 g~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 150 GEGVDVLRNHLKQS 163 (172)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999754
No 134
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.74 E-value=1.1e-17 Score=179.56 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=113.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence 457899999999999999999999887666556555555555555554 378999999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQT-REAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+. ..++..+.. .++|+++|+||+|+.+... ......+.. .+ .++++++||++|.|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 91 VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ------EN--GLFFMETSAKTATNV 162 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HT--TCEEEECCSSSCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHH------Hc--CCEEEEEECCCCCCH
Confidence 999998443222 233333333 3788999999999965321 111111111 11 258999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
++++++|...
T Consensus 163 ~~l~~~l~~~ 172 (181)
T 2efe_B 163 KEIFYEIARR 172 (181)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999999743
No 135
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.73 E-value=1.1e-17 Score=182.42 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=108.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|....+.. ..+ |.......+.+.+..+.+|||||++.|..++..+++.+|++++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv 103 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 103 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEE--ETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCC--cCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 456899999999999999999998877642 223 33344455677888999999999999999998999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHHH----cCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQ-TREAIAHAKI----SGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~~----~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+ ..+.+..+.. .++|+++|+||+|+.+... .++...+.... .....++++++||++|.|++
T Consensus 104 ~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~----~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 104 VDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQH----LRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG----CSSCCEEEEECBTTTTBTHH
T ss_pred EECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccc----ccCCceEEEECcCCCcCCHH
Confidence 9999853322 2233333322 3789999999999976422 22222221111 11123589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
+++++|...
T Consensus 180 ~l~~~l~~~ 188 (192)
T 2b6h_A 180 DGLDWLSHE 188 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999743
No 136
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.73 E-value=3.4e-18 Score=183.91 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=110.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|....+.....+++.... ...+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 457899999999999999999998887655555555444 555566664 67899999999998888889999999999
Q ss_pred EEeCCCCCcHHHH-----HHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQTR-----EAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt~-----e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++....+.. +....+...++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~ 155 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE------SW--NAAFLESSAKENQT 155 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH------HT--TCEEEECCTTSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH------Hh--CCcEEEEecCCCCC
Confidence 9999983222211 1222223457899999999998642211 11111111 11 24899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|+.|....
T Consensus 156 v~~l~~~l~~~~ 167 (181)
T 3t5g_A 156 AVDVFRRIILEA 167 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 137
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.73 E-value=8e-18 Score=185.47 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=111.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|....+.....+++ .+.....+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCS-EEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCee-cceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 466899999999999999999999887765554444 4444555556655 5569999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhHHHH-HHHhh------hcccccccCCCCcEEEeec
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLDRIK-QDLIS------EQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~-~~l~~------~~~~~~~~~~~~~v~~iSA 213 (1527)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+....... ..... .........+..+++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 99999985433332 22333333 38999999999999764321111 00000 0000001123357999999
Q ss_pred cCCCChhHHHHHHHH
Q psy1758 214 KTGVGINKLLENISL 228 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~ 228 (1527)
++|.||+++|+.|..
T Consensus 187 ~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 187 LTQRGLKTVFDEAIR 201 (204)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999999864
No 138
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.73 E-value=5.2e-18 Score=186.26 Aligned_cols=156 Identities=16% Similarity=0.083 Sum_probs=107.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 3557899999999999999999999888766667777666666666776 47899999999999888888999999999
Q ss_pred EEEeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+ |...+......++|+++|+||+|+...... .....+.. .. .++++++||++|.|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~SA~~g~g 174 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ------EN--ELMFLETSALTGEN 174 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEEECTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCC
Confidence 999999843322 222222222357899999999999642211 11111111 11 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|++|....
T Consensus 175 i~~l~~~l~~~i 186 (200)
T 2o52_A 175 VEEAFLKCARTI 186 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998543
No 139
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.73 E-value=1.9e-17 Score=181.80 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=114.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 347899999999999999999999887666556555555555555554 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTR-EAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+.. .++..+.. .+.|+++|+||+|+.+... ......+.. .+ .++++++||++|.|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD------HL--GFEFFEASAKDNINV 158 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH------HH--TCEEEECBTTTTBSS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHH------HC--CCeEEEEECCCCCCH
Confidence 9999984332222 22233332 4789999999999965321 111111111 12 148999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|++|....
T Consensus 159 ~~l~~~l~~~i 169 (203)
T 1zbd_A 159 KQTFERLVDVI 169 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998543
No 140
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.73 E-value=9e-18 Score=177.96 Aligned_cols=153 Identities=21% Similarity=0.212 Sum_probs=111.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+...+ ..+.+|||||++.|..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 447899999999999999999999887555455444444444445554 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+.. .++..+. ..++|+++|+||+|+.+... .+....+.. .+ ..+++++||++|.|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYAD------SI--HAIFVETSAKNAINI 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH------HT--TCEEEECBTTTTBSH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCcCH
Confidence 9999985432222 2223333 34678999999999975321 111111111 11 258999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++++.|..
T Consensus 157 ~~l~~~i~~ 165 (170)
T 1z0j_A 157 NELFIEISR 165 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999964
No 141
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.73 E-value=9.8e-18 Score=182.36 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=107.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccc----------cCCceeEEEEEEEE-EeC--CeEEEEEeCCChhhHHHHHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFS----------EAGGITQHIGAYNV-VTN--HGSITFLDTPGHEAFTAMRA 134 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~----------~~~giT~~~~~~~~-~~~--~~~i~~iDTPG~e~f~~~~~ 134 (1527)
+..+|+++|++|+|||||++.+.+...... ..+++..+.....+ ..+ ...+.||||||++.|..++.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 457899999999999999977765432221 11122222222112 222 34789999999999999999
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHH---------cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCC
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKI---------SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGA 205 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~---------~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~ 205 (1527)
.+++.+|++|+|+|++++...+..+.+..+.. .++|+++|+||+|+.+.........+.. .+ +.
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~------~~-~~ 165 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD------PE-GK 165 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHC------TT-CC
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHH------hc-CC
Confidence 99999999999999997655444444433322 5789999999999976422222222211 11 12
Q ss_pred CcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 206 SPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 206 ~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
.+++++||++|.|++++|++|....
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHH
Confidence 3899999999999999999998654
No 142
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.73 E-value=1.1e-17 Score=183.85 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=117.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence 457899999999999999999999888777777777887777777666 478999999999999888899999999999
Q ss_pred EEeCCCCCcHH----HHHHHHHHHH----cCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 146 VVAADDGVMPQ----TREAIAHAKI----SGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 146 Vvda~~g~~~q----t~e~i~~~~~----~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
|+|+++....+ |...+..... .++|+++|+||+|+...... .....+... ....+++++||++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS-------KNNIPYFETSAKEA 159 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH-------TTSCCEEECBTTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh-------cCCceEEEEeCCCC
Confidence 99999843322 2222222221 47899999999999742211 111111110 12358999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.|+++++++|....
T Consensus 160 ~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 160 INVEQAFQTIARNA 173 (207)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997543
No 143
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.73 E-value=1.2e-17 Score=177.02 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=97.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHH-HHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTA-MRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~-~~~~~~~~aD~~IlV 146 (1527)
++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++. .+.+|||||++.|.. ++..+++.+|++++|
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 82 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIV 82 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEE
Confidence 57999999999999999999887765555555566666666667664 678999999999976 666678899999999
Q ss_pred EeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 147 VAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 147 vda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
+|+++....+. ..++..+.. .++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 83 FSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG------TL--SCKHIETSAALHHNT 154 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HT--TCEEEECBTTTTBSH
T ss_pred EECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH------Hc--CCcEEEecCccCCCH
Confidence 99998322111 122222222 37899999999998642211 11111111 11 248999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|+.+....
T Consensus 155 ~~l~~~l~~~i 165 (169)
T 3q85_A 155 RELFEGAVRQI 165 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997543
No 144
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.73 E-value=2e-17 Score=194.22 Aligned_cols=163 Identities=28% Similarity=0.299 Sum_probs=127.2
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-CeEEEEEeCCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHAD 997 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~iniiDTPGh~d 997 (1527)
+...-.|||+|++|+|||||+|+|++.... ......++|.......+.++ +++++||||||+.+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~---------------i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVS---------------IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCcc---------------ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCc
Confidence 445668999999999999999999876321 12334567777777778888 99999999999977
Q ss_pred ch----------HHHHHHHHhcCEEEEEEeCCCCCChhHHHH-HHHHHHcCCccEEEEeccCCCC-C-ChhhhHHHHHHH
Q psy1758 998 FG----------GEVERILSMVDNVLLLIDAVEGPMPQTRFV-TRKALKLGFKPIVVVNKIDRSN-A-RPEWVVDATFDL 1064 (1527)
Q Consensus 998 f~----------~ev~~~l~~aD~ailVVDa~~G~~~qt~~~-~~~~~~~glp~IvviNKiD~~~-a-~~~~v~~~~~~~ 1064 (1527)
+. ..+..++..+|++++|+|++++...++..+ +..+...++|+++|+||+|+.. . ......+++.+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~ 151 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKK 151 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHh
Confidence 55 667788999999999999999999999888 6777778999999999999962 2 122233333222
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
+ + ...+++++||++|. |+++|++.+.+++|..
T Consensus 152 ~---~-----~~~~i~~vSA~~g~----------gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 152 H---P-----ELTEIVPISALKGA----------NLDELVKTILKYLPEG 183 (308)
T ss_dssp C---T-----TCCCEEECBTTTTB----------SHHHHHHHHHHHSCBC
T ss_pred c---c-----CCCeEEEEeCCCCC----------CHHHHHHHHHHhCccC
Confidence 1 1 12479999999998 9999999999999753
No 145
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.73 E-value=1.1e-17 Score=176.97 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=114.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 4578999999999999999999998876666666666666666666654 78999999999999888899999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHHH--cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 146 VVAADDGVMPQTR-EAIAHAKI--SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~~--~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+|+++....+.. .++..+.. .+.|+++|+||+|+.+... ......+.. .+ .++++++||++|.|++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAK------RL--KLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHH------HH--TCEEEECBTTTTBSSH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHH------Hc--CCeEEEEecCCCCCHH
Confidence 9999984322211 22222222 4899999999999865321 111111111 11 2489999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
+++++|...
T Consensus 156 ~l~~~l~~~ 164 (168)
T 1z2a_A 156 EVFKYLAEK 164 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
No 146
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.73 E-value=7.4e-18 Score=192.81 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=119.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH------HHHhhc--cc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA------MRARGA--KV 139 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~------~~~~~~--~~ 139 (1527)
+.++|+++|++|+|||||+++|++..+..+..+|+|.+.....+...+..+.||||||++.|.. +...++ ..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 83 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGD 83 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcC
Confidence 3478999999999999999999998888888899999999988988889999999999877643 233444 58
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|++++|+|+++. .....++..+...++|+++|+||+|+....... ....+. ..++ +|++++||++|.|
T Consensus 84 ~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~------~~lg--~~vi~~SA~~g~g 153 (258)
T 3a1s_A 84 ADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQ------KHLG--IPVVFTSSVTGEG 153 (258)
T ss_dssp CSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHH------HHHC--SCEEECCTTTCTT
T ss_pred CCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHH------HHcC--CCEEEEEeeCCcC
Confidence 9999999999973 344556666777899999999999985421100 011111 1122 6999999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
+++|++.+....
T Consensus 154 i~el~~~i~~~~ 165 (258)
T 3a1s_A 154 LEELKEKIVEYA 165 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999997643
No 147
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=177.09 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=100.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccccc-ccCCceeEEEEEEEEEeCCe--EEEEEeCCChhh--HHHHHHhhccccCE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHG--SITFLDTPGHEA--FTAMRARGAKVTDI 142 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~-~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~--f~~~~~~~~~~aD~ 142 (1527)
+.++|+++|++|+|||||+++|.+..+.. ....+.+... ..+..++. .+.+|||||++. +..+...+++.+|+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE--RTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEE--EEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeE--EEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 45789999999999999999999887633 3334554433 33445554 788999999988 56677788899999
Q ss_pred EEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 143 VVLVVAADDGVMPQTR-EAIAHAKI----SGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~-e~i~~~~~----~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
+++|+|+++....+.. +++..+.. .++|+++|+||+|+.+.... .....+. ..+ .++++++||++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~~~Sa~~ 152 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA------VVF--DCKFIETSATL 152 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH------HHH--TSEEEECBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH------HHc--CCeEEEEecCC
Confidence 9999999984322222 22333333 37899999999999753211 1111111 112 25899999999
Q ss_pred CCChhHHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQA 230 (1527)
Q Consensus 216 g~gI~eL~~~l~~~~ 230 (1527)
|.|+++++++|....
T Consensus 153 g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 153 QHNVAELFEGVVRQL 167 (175)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 148
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=182.77 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=113.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 4557899999999999999999999887655555555555444444444 47899999999999999999999999999
Q ss_pred EEEeCCCCCcHHH-HHHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQT-REAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt-~e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+. ..++..+. ..++|+++|+||+|+..... ......+.. .. .++++++||++|.|
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 174 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAE------NN--GLLFLETSALDSTN 174 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEEECTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCC
Confidence 9999998433222 22223332 24789999999999965321 111111111 11 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++++.|....
T Consensus 175 i~~l~~~l~~~i 186 (193)
T 2oil_A 175 VELAFETVLKEI 186 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
No 149
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.73 E-value=9.7e-18 Score=184.64 Aligned_cols=155 Identities=16% Similarity=0.167 Sum_probs=117.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.||||||++.|..++..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil 86 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 86 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence 4578999999999999999999998887777777777776666777765 78999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH-HHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTRE-AIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~e-~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+... ++..+. ..+.|+++|+||+|+.+... ......+.. .+ .++++++||++|.|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 87 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD------AN--KMPFLETSALDSTNV 158 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HT--TCCEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH------Hc--CCeEEEEeCCCCCCH
Confidence 99999844322222 222222 34689999999999975321 111111111 11 258999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|++|....
T Consensus 159 ~~l~~~l~~~i 169 (206)
T 2bcg_Y 159 EDAFLTMARQI 169 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997543
No 150
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.73 E-value=8.9e-18 Score=196.29 Aligned_cols=158 Identities=24% Similarity=0.250 Sum_probs=121.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC---
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD--- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d--- 997 (1527)
+..+|+|+|++|+|||||+|+|++....+. ....++|.+.....+.+++.+++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~iv---------------s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPI---------------SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCC---------------CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeee---------------cCCCCceeEEEEEEEEeCCcEEEEecCccccchhh
Confidence 446899999999999999999997633211 11234444444455677899999999999988
Q ss_pred -----chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc
Q psy1758 998 -----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 1070 (1527)
Q Consensus 998 -----f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~ 1070 (1527)
|...+..+++.+|++++|+|++++...++..++..+... ++|+++|+||+|+.+.+.+ +.+.+. .+ .
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~----~~-~ 144 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYH----EL-L 144 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHH----HT-S
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHHH----Hh-c
Confidence 667778889999999999999999888888888888777 8999999999999764321 222222 22 0
Q ss_pred cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1071 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1071 ~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...+++++||++|. |++.|++.+.+.+|.
T Consensus 145 ----~~~~~~~iSA~~g~----------gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 145 ----PEAEPRMLSALDER----------QVAELKADLLALMPE 173 (301)
T ss_dssp ----TTSEEEECCTTCHH----------HHHHHHHHHHTTCCB
T ss_pred ----CcCcEEEEeCCCCC----------CHHHHHHHHHHhccc
Confidence 12368999999998 999999999998864
No 151
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.73 E-value=9.5e-18 Score=182.51 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=111.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 34578999999999999999999998876655565565555555666664 7899999999999988889999999999
Q ss_pred EEEeCCCCCcHHH-HHHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQT-REAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt-~e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+. ..++..+. ..++|+++|+||+|+.+... ......+.. .+ .++++++||++|.|
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR------EH--GLIFMETSAKTACN 170 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HH--TCEEEEECTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCC
Confidence 9999998432222 22222332 34789999999999964211 111111111 11 24899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|+.|....
T Consensus 171 i~~l~~~l~~~i 182 (191)
T 2a5j_A 171 VEEAFINTAKEI 182 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
No 152
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.73 E-value=1.9e-17 Score=179.63 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=114.0
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHH-HHHHhhccccCE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFT-AMRARGAKVTDI 142 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~-~~~~~~~~~aD~ 142 (1527)
..+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 34568999999999999999999999888766666666666666666666 478999999999998 788888999999
Q ss_pred EEEEEeCCCCCc----HHHHHHHHHH-HHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 143 VVLVVAADDGVM----PQTREAIAHA-KISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 143 ~IlVvda~~g~~----~qt~e~i~~~-~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
+|+|+|+++... ..|.+.+... ...++|+++|+||+|+.+... ......+.. .+ .++++++||++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~ 168 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD------TH--SMPLFETSAKN 168 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HT--TCCEEECCSSS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH------Hc--CCEEEEEeCCc
Confidence 999999998322 2222222221 235789999999999965321 111111111 11 24899999999
Q ss_pred C---CChhHHHHHHHH
Q psy1758 216 G---VGINKLLENISL 228 (1527)
Q Consensus 216 g---~gI~eL~~~l~~ 228 (1527)
| .|++++|+.|..
T Consensus 169 ~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAH 184 (189)
T ss_dssp GGGGSCHHHHHHHHC-
T ss_pred CCcccCHHHHHHHHHH
Confidence 9 999999999864
No 153
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.73 E-value=2.8e-17 Score=173.38 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=106.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++... ...+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 357899999999999999999998887555544444333 334455554 78999999999999999999999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 146 VVAADDGVMPQTR-EAIAHAK----ISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~----~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
|+|+++....+.. .++..+. ..++|+++|+||+|+.+... .+... +. ..+ .++++++||++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~------~~~--~~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RA------DQW--NVNYVETSAKTRA 152 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-HH------HHH--TCEEEECCTTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH-HH------HHc--CCeEEEeCCCCCC
Confidence 9999974322211 1112222 23789999999999965321 11111 11 112 2489999999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
|+++++++|...
T Consensus 153 gi~~l~~~l~~~ 164 (168)
T 1u8z_A 153 NVDKVFFDLMRE 164 (168)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999754
No 154
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.73 E-value=3.8e-18 Score=197.12 Aligned_cols=150 Identities=22% Similarity=0.320 Sum_probs=118.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH----------HHHhh-
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA----------MRARG- 136 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~----------~~~~~- 136 (1527)
+.++|+++|++|+|||||+|+|++..+..+..+|+|.+.....+.+.+..+.||||||++.|.. ....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4578999999999999999999999988889999999999999999889999999999877652 22222
Q ss_pred -ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 137 -AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 137 -~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
...+|++++|+|+++ ......+...+...++|+++|+||+|+.+.... .....+.. .++ +|++++||+
T Consensus 82 ~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~------~lg--~~~i~~SA~ 151 (274)
T 3i8s_A 82 LSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSA------RLG--CPVIPLVST 151 (274)
T ss_dssp HHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHH------HHT--SCEEECCCG
T ss_pred hhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHH------hcC--CCEEEEEcC
Confidence 278999999999997 445556666777789999999999998542110 01111111 122 589999999
Q ss_pred CCCChhHHHHHHH
Q psy1758 215 TGVGINKLLENIS 227 (1527)
Q Consensus 215 tg~gI~eL~~~l~ 227 (1527)
+|.|+++|++.|.
T Consensus 152 ~g~gi~el~~~i~ 164 (274)
T 3i8s_A 152 RGRGIEALKLAID 164 (274)
T ss_dssp GGHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999885
No 155
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.73 E-value=8.4e-18 Score=183.30 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=112.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+++..+.. ..+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 45679999999999999999999998876666665555443 34555555 5689999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhH----HHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLD----RIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~----~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+|+|+++....... .++..+.. .++|+++|+||+|+.+.... .....+.. .++ ..+++++||++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~Sa~~~ 172 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ------KLG-CVAYIEASSVAK 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH------HHT-CSCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHH------hcC-CCEEEEeecCCC
Confidence 99999984332221 12222222 36899999999999753111 11111111 111 123999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.||+++|+.|....
T Consensus 173 ~gi~~l~~~l~~~i 186 (194)
T 3reg_A 173 IGLNEVFEKSVDCI 186 (194)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997553
No 156
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.73 E-value=1e-17 Score=177.07 Aligned_cols=151 Identities=20% Similarity=0.176 Sum_probs=88.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..+|+++|++|+|||||+++|.+... .....++.+.. ..+..++. .+.+|||||++.|..++..+++.+|++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 46899999999999999999987665 33344455543 22334443 78899999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHH----HcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQT-REAIAHAK----ISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~----~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++....+. ..++..+. ..++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 150 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV------VF--DCKFIETSAALHHN 150 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH------HT--TCEEEECBGGGTBS
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH------Hh--CCcEEEeccCCCCC
Confidence 999998432222 22223332 247899999999999753211 11111111 11 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|++|....
T Consensus 151 i~~l~~~l~~~~ 162 (166)
T 3q72_A 151 VQALFEGVVRQI 162 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997653
No 157
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=2.2e-17 Score=203.51 Aligned_cols=153 Identities=20% Similarity=0.301 Sum_probs=112.9
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh---------HHHHHHhhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA---------FTAMRARGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~---------f~~~~~~~~~~ 139 (1527)
|+|+++|++|||||||+|+|.+... .++..+|+|++.....+.+++..+.+|||||++. +...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 6899999999999999999998875 4678899999999999999999999999999653 55667788999
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
||++++|+|++++......+....++..++|+++|+||+|+.... ...... ... .++ ..+++++||++|.|+
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~----~~~~~~-~~~--~lg-~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF----EREVKP-ELY--SLG-FGEPIPVSAEHNINL 153 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH----HHHTHH-HHG--GGS-SCSCEECBTTTTBSH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc----HHHHHH-HHH--hcC-CCCEEEEeccCCCCH
Confidence 999999999999988877777777777899999999999985320 111100 111 122 226899999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
++|++.+....
T Consensus 154 ~~L~~~i~~~l 164 (439)
T 1mky_A 154 DTMLETIIKKL 164 (439)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999997543
No 158
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=1.8e-17 Score=178.45 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=110.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|.+..+ ....+++. .....+.+++..+.+|||||++.|...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4568999999999999999999997776 22223222 22345566788999999999999998889999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+ ..+.+..+. ..++|+++|+||+|+.+.. ..+....+.... .....++++++||++|.|++
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 93 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE----LKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTT----CCSSCEEEEEEBGGGTBTHH
T ss_pred EECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccc----ccCCceEEEEccCCCCcCHH
Confidence 9999864332 333344333 3578999999999997642 222222221110 11123589999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
+++++|....
T Consensus 169 ~l~~~l~~~~ 178 (183)
T 1moz_A 169 EGLDWLIDVI 178 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997553
No 159
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.73 E-value=1e-17 Score=181.81 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=113.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+...+ ..+.||||||++.|..++..+++.+|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 457899999999999999999999887655555555555444455544 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQT-REAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+. ..++..+.. .+.|+++|+||+|+.+... ......+.. .++ ++++++||++|.|+
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~--~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLAD------DLG--FEFFEASAKENINV 172 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HHT--CEEEECBTTTTBSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHH------HcC--CeEEEEECCCCCCH
Confidence 999988432222 222333333 4789999999999965321 111111111 121 48999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
++++++|....
T Consensus 173 ~~l~~~l~~~i 183 (189)
T 2gf9_A 173 KQVFERLVDVI 183 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997543
No 160
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.73 E-value=1.7e-17 Score=184.21 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=114.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC------------CeEEEEEeCCChhhHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN------------HGSITFLDTPGHEAFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~------------~~~i~~iDTPG~e~f~~~~~ 134 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.++....+.++ ...+.||||||++.|...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 345789999999999999999999988766666666666655555544 35799999999999999999
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAI-AHAKI----SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASP 207 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i-~~~~~----~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ 207 (1527)
.+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.+... ......+.. .+ .++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~------~~--~~~ 174 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD------KY--GIP 174 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH------HT--TCC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH------HC--CCc
Confidence 999999999999999984333222222 22221 4689999999999965211 111111111 11 258
Q ss_pred EEEeeccCCCChhHHHHHHHHHH
Q psy1758 208 FISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 208 v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
++++||++|.||++++++|....
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998543
No 161
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.72 E-value=7.9e-18 Score=187.61 Aligned_cols=176 Identities=17% Similarity=0.097 Sum_probs=124.0
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEE-ecCeEEEEEeCCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE-YNGTRINIIDTPGHA 996 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~-~~~~~iniiDTPGh~ 996 (1527)
+....++|+++|++|+|||||+++|+..... .......|+|.......+. +++..++||||||+.
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 90 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRL--------------AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYG 90 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSS--------------SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCC
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcc--------------eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCC
Confidence 3345679999999999999999999865310 0122334666666555555 567899999999975
Q ss_pred Cc----------hHHHHHHHHh---cCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHH
Q psy1758 997 DF----------GGEVERILSM---VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATF 1062 (1527)
Q Consensus 997 df----------~~ev~~~l~~---aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~ 1062 (1527)
+. ...+..+++. +|++++|+|++++.......++..+...++|+++|+||+|+...+ .....+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~ 170 (223)
T 4dhe_A 91 YAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQ 170 (223)
T ss_dssp SSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred cccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHH
Confidence 42 4444455555 788999999999888888888888888899999999999997532 222344444
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN 1117 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~ 1117 (1527)
+.+............|++++||++|. |+++|++.|.+.++.+...
T Consensus 171 ~~l~~~~~~~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 171 KSLDAYRDAGYAGKLTVQLFSALKRT----------GLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp HHHHHHHHHTCCSCEEEEEEBTTTTB----------SHHHHHHHHHHHHC-----
T ss_pred HHHHhhhhcccCCCCeEEEeecCCCc----------CHHHHHHHHHHhcCccCCc
Confidence 43332210001234689999999998 9999999999999877543
No 162
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.8e-17 Score=180.64 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=110.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCC--ceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAG--GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~--giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+ +.+.......+......+.||||||++.|..++..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 3457899999999999999999998886544444 44443333333334458999999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH-HHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQTR-EAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt~-e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+... .+....+.. .+ .++++++||++|.|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAE------SI--GAIVVETSAKNAIN 172 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------TT--TCEEEECBTTTTBS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCcC
Confidence 99999985433222 22233332 3789999999999964211 111111111 12 25899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
++++++.|...
T Consensus 173 i~~l~~~l~~~ 183 (192)
T 2fg5_A 173 IEELFQGISRQ 183 (192)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999743
No 163
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.72 E-value=1.8e-17 Score=184.23 Aligned_cols=164 Identities=16% Similarity=0.152 Sum_probs=111.8
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
...+..+|+++|++|+|||||+++|.+..+.....+++..+.. ..+..++ ..+.||||||++.|..++..+++.+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 3456789999999999999999999998887666666655543 3333333 478999999999999999999999999
Q ss_pred EEEEEeCCCCCcHHH--HHHHHHHHH--cCCCEEEEEEcccCCcchhHHHH-HH-----H--hhhcccccccCCCCcEEE
Q psy1758 143 VVLVVAADDGVMPQT--REAIAHAKI--SGVPLIVAINKIDKLDINLDRIK-QD-----L--ISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt--~e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~-~~-----l--~~~~~~~~~~~~~~~v~~ 210 (1527)
+|+|+|+++...... ..++..+.. .++|+++|+||+|+.+....... .. . .........+ +..++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL-GAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc-CCCEEEE
Confidence 999999998543222 122233333 37899999999999753110000 00 0 0000011112 1238999
Q ss_pred eeccCCCC-hhHHHHHHHHHH
Q psy1758 211 ISAKTGVG-INKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~g-I~eL~~~l~~~~ 230 (1527)
+||++|.| |+++|+.+....
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHH
T ss_pred eccCCCcccHHHHHHHHHHHH
Confidence 99999998 999999998654
No 164
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.2e-17 Score=179.46 Aligned_cols=155 Identities=20% Similarity=0.195 Sum_probs=114.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 457899999999999999999999887666666666666555555555 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTRE-AIAHAKI----SGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~e-~i~~~~~----~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+... ++..+.. .++|+++|+||+|+...... .....+.. .+ .++++++||++|.|+
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR------KH--SMLFIEASAKTCDGV 165 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH------HT--TCEEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH------Hc--CCEEEEecCCCCCCH
Confidence 99999843322222 2233332 36889999999999543211 11111111 11 258999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
++++++|....
T Consensus 166 ~~l~~~l~~~~ 176 (195)
T 1x3s_A 166 QCAFEELVEKI 176 (195)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997654
No 165
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=7.2e-18 Score=183.48 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=111.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCce--eEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI--TQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~gi--T~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
...++|+++|++|+|||||+++|.+..+.....+++ +.......+...+..+.||||||++.|..++..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 356789999999999999999999887654444333 333333434445568999999999999999999999999999
Q ss_pred EEEeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++... ..|.+.+......++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 172 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAE------QL--GFDFFEASAKENIS 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HH--TCEEEECBTTTTBS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH------Hc--CCeEEEEECCCCCC
Confidence 9999998332 12222222222257899999999998653211 11111111 11 24899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|+.|....
T Consensus 173 i~~l~~~l~~~i 184 (191)
T 3dz8_A 173 VRQAFERLVDAI 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
No 166
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.72 E-value=3.8e-17 Score=176.01 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=111.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+++.... ...+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 3557899999999999999999998887555544444333 344455554 7899999999999999999999999999
Q ss_pred EEEeCCCCCcHH----HHHHHH-HHHHcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 145 LVVAADDGVMPQ----TREAIA-HAKISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 145 lVvda~~g~~~q----t~e~i~-~~~~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+|+|+++....+ |...+. .....++|+++|+||+|+.+... .+.. .+. ..+ .++++++||++|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~------~~~--~~~~~~~Sa~~~ 165 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK-NRA------EQW--NVNYVETSAKTR 165 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHH-HHH------HHT--TCEEEECCTTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH-HHH------HHc--CCeEEEeCCCCC
Confidence 999999733211 112221 12223789999999999865321 1111 111 112 258999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.|+++++++|....
T Consensus 166 ~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 166 ANVDKVFFDLMREI 179 (187)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 167
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.72 E-value=1.9e-17 Score=178.41 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=110.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+...+.+++.... ...+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 457899999999999999999998877555444433222 334455554 57799999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEEcccCCcchhHH-HHHHHh-------hhcccccccCCCCcEEEeec
Q psy1758 146 VVAADDGVMPQTRE--AIAHAKIS--GVPLIVAINKIDKLDINLDR-IKQDLI-------SEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 146 Vvda~~g~~~qt~e--~i~~~~~~--~vpiIvviNKiDl~~~~~~~-~~~~l~-------~~~~~~~~~~~~~~v~~iSA 213 (1527)
|+|+++....+... ++..+... ++|+++|+||+|+.+..... ...... ........+ +..+++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc-CCcEEEEecC
Confidence 99999844332221 23333332 89999999999997532110 000000 000001111 2248999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
++|.|++++++.|...
T Consensus 162 ~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRA 177 (186)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHH
Confidence 9999999999999754
No 168
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=1.3e-17 Score=180.48 Aligned_cols=154 Identities=20% Similarity=0.250 Sum_probs=118.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH------HHHHhhcc--
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT------AMRARGAK-- 138 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~------~~~~~~~~-- 138 (1527)
.+.++|+++|++|+|||||+++|.+..+..+..+++|.+.....+.+++..+.+|||||++.|. .++..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 3567899999999999999999999888778888999888888888889999999999998773 34445553
Q ss_pred ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 139 VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
.+|++++|+|+++ ......++..+...+.|+++|+||+|+..... ......+.. .+ .++++++||++|.
T Consensus 85 ~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 85 KPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK------IL--GVKVVPLSAAKKM 154 (188)
T ss_dssp CCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH------HH--TSCEEECBGGGTB
T ss_pred CCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH------Hh--CCCeEEEEecCCC
Confidence 4899999999986 33444555566667899999999999854211 001111111 11 2589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++++.+....
T Consensus 155 ~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 155 GIEELKKAISIAV 167 (188)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997553
No 169
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=3.6e-17 Score=176.69 Aligned_cols=154 Identities=23% Similarity=0.271 Sum_probs=108.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....+++ .+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999887755544443 3444455556665 47789999999999999999999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHH----HHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTR-EAIAHA----KISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~----~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+.. .++..+ ...++|+++|+||+|+.+... ......+.. .+ .++++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR------SY--GIPFIETSAKTRQGV 153 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH------HH--TCCEEECCTTTCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH------Hc--CCeEEEEeCCCCCCH
Confidence 9999984322221 122222 234789999999999975321 111222221 11 248999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
++++++|....
T Consensus 154 ~~l~~~l~~~~ 164 (189)
T 4dsu_A 154 DDAFYTLVREI 164 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 170
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=3.7e-17 Score=173.38 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=106.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|.+..+.....+++...... .+..++ ..+.||||||++.|..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4689999999999999999999887755544444433322 233343 3789999999999999999999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHHH-----cCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 147 VAADDGVMPQ-TREAIAHAKI-----SGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~~-----~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+++....+ ...++..+.. .++|+++|+||+|+.+.... .....+. ..+ .++++++||++|.|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~~~Sa~~~~g 153 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA------RTW--KCAFMETSAKLNHN 153 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH------HHH--TCEEEECBTTTTBS
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH------HHh--CCeEEEecCCCCcC
Confidence 9999733211 1222222222 47899999999998653211 1111111 112 25899999999999
Q ss_pred hhHHHHHHHH
Q psy1758 219 INKLLENISL 228 (1527)
Q Consensus 219 I~eL~~~l~~ 228 (1527)
+++++++|..
T Consensus 154 i~~l~~~l~~ 163 (172)
T 2erx_A 154 VKELFQELLN 163 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999964
No 171
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.72 E-value=1.6e-17 Score=180.18 Aligned_cols=156 Identities=20% Similarity=0.162 Sum_probs=113.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
+.++|+++|++|+|||||+++|....+.. ..+++. .....+.+++..+.+|||||++.|..++..+++.+|++++|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 97 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV 97 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEE
Confidence 56889999999999999999998777643 333322 334456667889999999999999888888999999999999
Q ss_pred eCCCCCcHH-HHHHHHHHHH----cCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQ-TREAIAHAKI----SGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~q-t~e~i~~~~~----~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+ ..+.+..+.. .+.|+++|+||+|+.+... .++...+..... ....++++++||++|.|+++
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 98 DSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSI----MNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC----CSSCEEEEECCTTTCTTHHH
T ss_pred eCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhc----cCCceEEEEccCCCccCHHH
Confidence 999864332 2333333322 4789999999999976422 222222211111 11235899999999999999
Q ss_pred HHHHHHHHH
Q psy1758 222 LLENISLQA 230 (1527)
Q Consensus 222 L~~~l~~~~ 230 (1527)
++++|....
T Consensus 174 l~~~l~~~i 182 (189)
T 2x77_A 174 GMDWLVERL 182 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997553
No 172
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.71 E-value=2.5e-17 Score=180.92 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=112.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
....+|+++|++|+|||||+++|.+..+.....++++.+... .+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 345789999999999999999999988766666665554432 3455554 7899999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHHc--CCCEEEEEEcccCCcchhHHHHHHHhh---h-------cccccccCCCCcEEE
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKIS--GVPLIVAINKIDKLDINLDRIKQDLIS---E-------QVIPEEYGGASPFIS 210 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~~--~vpiIvviNKiDl~~~~~~~~~~~l~~---~-------~~~~~~~~~~~~v~~ 210 (1527)
+|+|+++....+.. .++..+... ++|+++|+||+|+....... ..+.. . ......+ +..++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~ 178 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTR--RELAKMKQEPVRSEEGRDMANRI-SAFGYLE 178 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHH--HHHHTTTCCCCCHHHHHHHHHHT-TCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccch--hhhcccccCcCCHHHHHHHHHhC-CCcEEEE
Confidence 99999984322221 222333333 89999999999997642211 11100 0 0000111 2248999
Q ss_pred eeccCCCChhHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~ 229 (1527)
+||++|.|++++++.|...
T Consensus 179 ~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999754
No 173
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=9.2e-17 Score=176.26 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=112.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....+++.... ...+.+++. .+.||||||++.|..++..+++.+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4567999999999999999999998887555554444333 344556664 7889999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 145 LVVAADDGVMPQTR-EAIAHAK----ISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 145 lVvda~~g~~~qt~-e~i~~~~----~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+|+|+++....... .++..+. ..++|+++|+||+|+.+... .+... +. ..++ ++++++||++|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~------~~~~--~~~~~~Sa~~g 161 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RA------EQWN--VNYVETSAKTR 161 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH-HH------HHHT--CEEEEECTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH-HH------HHhC--CeEEEEeCCCC
Confidence 99999984322221 1222222 23789999999999965321 11111 11 1122 48999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.|++++|++|....
T Consensus 162 ~gi~~l~~~l~~~i 175 (206)
T 2bov_A 162 ANVDKVFFDLMREI 175 (206)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 174
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=180.57 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=110.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHH-HHHhhccccCEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTA-MRARGAKVTDIVV 144 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~-~~~~~~~~aD~~I 144 (1527)
..++|+++|++|+|||||+++|.+......+.++++.+.....+.+++. .+.+|||||++.|.. ++..+++.+|+++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 4578999999999999999999765554445556666555556666665 678899999988765 7777889999999
Q ss_pred EEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|+++....+. ..++..+.. .++|+++|+||+|+.+.... +....+. ..+ .++++++||++|.
T Consensus 102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a------~~~--~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA------GTL--SCKHIETSAALHH 173 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH------HHT--TCEEEEEBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH------HHh--CCEEEEEcCCCCC
Confidence 9999998332111 122222222 47899999999999753211 1111111 112 2589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++|+.|....
T Consensus 174 ~v~~lf~~l~~~i 186 (195)
T 3cbq_A 174 NTRELFEGAVRQI 186 (195)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997553
No 175
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=4e-17 Score=177.78 Aligned_cols=158 Identities=21% Similarity=0.230 Sum_probs=111.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....+++.... ...+..++ ..+.||||||+++|..++..+++.+|++++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 447899999999999999999998877655554443332 33455555 478899999999999999999999999999
Q ss_pred EEeCCCCCcHHHH--HHHHHHHHc--CCCEEEEEEcccCCcchhHHHHHHHhh----------hcccccccCCCCcEEEe
Q psy1758 146 VVAADDGVMPQTR--EAIAHAKIS--GVPLIVAINKIDKLDINLDRIKQDLIS----------EQVIPEEYGGASPFISI 211 (1527)
Q Consensus 146 Vvda~~g~~~qt~--e~i~~~~~~--~vpiIvviNKiDl~~~~~~~~~~~l~~----------~~~~~~~~~~~~~v~~i 211 (1527)
|+|+++....+.. .++..+... ++|+++|+||+|+.+.... ...+.. .......+ +..+++++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~ 172 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKT--LARLNDMKEKPICVEQGQKLAKEI-GACCYVEC 172 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHH--HHHHTTTTCCCCCHHHHHHHHHHH-TCSCEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccc--hhhcccccCcccCHHHHHHHHHHc-CCcEEEEe
Confidence 9999984332222 223333333 8999999999999763211 000000 00001111 22489999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.||+++|+.|...
T Consensus 173 Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999999754
No 176
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.71 E-value=1.8e-17 Score=191.16 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=121.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH------HHHhhc--cc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA------MRARGA--KV 139 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~------~~~~~~--~~ 139 (1527)
+.++|+++|++|+|||||+++|++..+..+..+++|.+.....+.+++..+.+|||||+..|.. ....++ ..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4578999999999999999999999888889999999999999999999999999999887654 344444 68
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcC-CCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISG-VPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~-vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|++++|+|+++. .+....+..+...+ .|+++|+||+|+.+..... ....+.. .+ .+|++++||++|.
T Consensus 82 ~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~------~l--g~~~~~~Sa~~g~ 151 (271)
T 3k53_A 82 ADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRK------EL--GVPVIPTNAKKGE 151 (271)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHH------HH--SSCEEECBGGGTB
T ss_pred CcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHH------Hc--CCcEEEEEeCCCC
Confidence 9999999999984 45556666666777 9999999999975421100 0111111 12 2589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++++.+....
T Consensus 152 gi~~l~~~i~~~~ 164 (271)
T 3k53_A 152 GVEELKRMIALMA 164 (271)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997653
No 177
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.71 E-value=2.5e-17 Score=178.49 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=106.8
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
..+..+|+++|++|+|||||+++|....+.....++.. +. ...+.+++. .+.||||||++.|. +++.+|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 35667999999999999999999999887655554422 22 355666665 56779999999987 66789999
Q ss_pred EEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchhH----HHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 144 VLVVAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINLD----RIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 144 IlVvda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~~----~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
++|+|+++....+. ..++..+.. .++|+++|+||+|+...+.. .....+.. .+ +.++++++||+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~------~~-~~~~~~e~Sa~ 162 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST------DL-KRCTYYETCAT 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH------HT-TTCEEEEEBTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH------Hc-CCCeEEEecCC
Confidence 99999998443333 223333332 46899999999998531111 11111111 11 23589999999
Q ss_pred CCCChhHHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQA 230 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~~ 230 (1527)
+|.||+++|++|....
T Consensus 163 ~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 163 YGLNVERVFQDVAQKV 178 (184)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997643
No 178
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.6e-17 Score=185.60 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=108.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ..+.||||||++.|..++..+++.+|++|+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vil 91 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALI 91 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEE
Confidence 457899999999999999999999888766666666666666666776 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+.. .++..+. ..++|+++|+||+|+..... ......+.. .+ .++++++||++|.||
T Consensus 92 V~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 92 VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ------EN--QLLFTETSALNSENV 163 (223)
T ss_dssp EEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHH------HT--TCEEEECCCC-CCCH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCCH
Confidence 9999985433222 2222333 23789999999999965211 111111111 11 258999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|++|...
T Consensus 164 ~~l~~~l~~~ 173 (223)
T 3cpj_B 164 DKAFEELINT 173 (223)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 179
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.70 E-value=1.1e-17 Score=185.84 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=111.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC---eEEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH---GSITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~---~~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
....+|+++|++|+|||||+++|.+..+.....++++.......+...+ ..+.||||||++.|..++..++..+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 3457899999999999999999998776554444444444343333332 4799999999999998888899999999
Q ss_pred EEEEeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 144 VLVVAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 144 IlVvda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+|++++...+ |...+......++|+++|+||+|+.+..... ....... .. ...++++++||++|.|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~--~~--~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS--KKLVMEV--LK--GKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC--HHHHHHH--TT--TCCCEEEEEBTTTTBTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC--HHHHHHH--HH--HcCCcEEEEecCCCCCH
Confidence 9999999854333 3333444444578999999999997531110 1111010 11 12358999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++++.|....
T Consensus 163 ~~l~~~l~~~~ 173 (218)
T 4djt_A 163 GLPFLHLARIF 173 (218)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 180
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1e-16 Score=174.94 Aligned_cols=154 Identities=20% Similarity=0.261 Sum_probs=110.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....+++..... ..+..++ ..+.||||||++.|..++..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 35578999999999999999999988776555554443332 2233444 37899999999999999999999999999
Q ss_pred EEEeCCCCCc----HHHHHHHHHHH--HcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGVM----PQTREAIAHAK--ISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i~~~~--~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|+++... ..+...+.... ..++|+++|+||+|+...... .....+. ..++ ++++++||++|.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~~ 156 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA------QEWK--CAFMETSAKMNY 156 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH------HHHT--CEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH------HHhC--CeEEEEecCCCC
Confidence 9999997322 12223333332 247899999999999753211 1111111 1122 489999999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
|+++++++|...
T Consensus 157 gi~~l~~~l~~~ 168 (199)
T 2gf0_A 157 NVKELFQELLTL 168 (199)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999754
No 181
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=181.34 Aligned_cols=162 Identities=18% Similarity=0.144 Sum_probs=93.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+++.... ...+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4568999999999999999999998877655555443333 334455554 7889999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhHHH-HHHHh-------hhcccccccCCCCcEEEee
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLDRI-KQDLI-------SEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~-~~~l~-------~~~~~~~~~~~~~~v~~iS 212 (1527)
+|+|+++....+.. .++..+.. .++|+++|+||+|+........ ..... +.......+ +..+++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV-GAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc-CCCEEEEec
Confidence 99999984322222 12222222 3789999999999976432110 00000 000011111 224899999
Q ss_pred ccCCCChhHHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQA 230 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~~ 230 (1527)
|++|.||+++|+.|....
T Consensus 190 A~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999997654
No 182
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.70 E-value=1.7e-17 Score=178.19 Aligned_cols=158 Identities=20% Similarity=0.199 Sum_probs=101.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|....+.....+++.... ...+..++ ..+.||||||++.|..++..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 3568999999999999999999998876554444333222 11222233 35779999999999999999999999999
Q ss_pred EEEeCCCCCcHHHHH--HHHHHHH--cCCCEEEEEEcccCCcchhHH---------HHHHHhhhcccccccCCCCcEEEe
Q psy1758 145 LVVAADDGVMPQTRE--AIAHAKI--SGVPLIVAINKIDKLDINLDR---------IKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 145 lVvda~~g~~~qt~e--~i~~~~~--~~vpiIvviNKiDl~~~~~~~---------~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
+|+|+++....+... ++..+.. .++|+++|+||+|+.+..... ...+.. .....+ +..+++++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~---~~~~~~-~~~~~~~~ 160 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE---ELKKLI-GAPAYIEC 160 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH---HHHHHH-TCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH---HHHHHc-CCCEEEEE
Confidence 999999843322221 2223332 378999999999986532210 000000 011111 22489999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.|++++|+.|...
T Consensus 161 Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999754
No 183
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=1.5e-17 Score=205.32 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=99.7
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH--------Hh
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR--------AR 135 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~--------~~ 135 (1527)
....+++|+++|++|+|||||+|+|.+.. ...+..+|+|++.....+.+++.+++||||||++.+.... ..
T Consensus 229 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------C
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 34557889999999999999999999876 4677889999999999999999999999999998776443 34
Q ss_pred hccccCEEEEEEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 136 GAKVTDIVVLVVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 136 ~~~~aD~~IlVvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
+++.+|++++|+|++++... ++.+++..+. ++|+++|+||+|+........ ..+... +..+++++
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~-~~l~~~--------~~~~~i~v 377 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI-RAIADG--------TGTEVIGI 377 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH-HHHHHH--------HTSCEEEC
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH-HHHHhc--------CCCceEEE
Confidence 67899999999999998766 4444444443 789999999999976543221 112211 11589999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.|+++|+++|...
T Consensus 378 SAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp BTTTTBSHHHHHHHHTHH
T ss_pred EECCCCCHHHHHHHHHHH
Confidence 999999999999999754
No 184
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4.9e-17 Score=179.44 Aligned_cols=160 Identities=20% Similarity=0.233 Sum_probs=107.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+... .+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45689999999999999999999988765555555444432 3455553 78899999999999999999999999999
Q ss_pred EEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhH-HHHHHHhhhcc-------cccccCCCCcEEEeec
Q psy1758 146 VVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLD-RIKQDLISEQV-------IPEEYGGASPFISISA 213 (1527)
Q Consensus 146 Vvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~-------~~~~~~~~~~v~~iSA 213 (1527)
|+|+++....+.. .++..+.. .++|+++|+||+|+...... +....+..... .... .+..+++++||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~SA 181 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVR-IQAYDYLECSA 181 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH-TTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHh-cCCCEEEEeeC
Confidence 9999984322221 22233333 38999999999999764211 11111100000 0011 12238999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
++|.|+++++++|...
T Consensus 182 ~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 182 KTKEGVREVFETATRA 197 (207)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999999754
No 185
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=183.36 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=110.4
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEE--eCCeEEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVV--TNHGSITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~--~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
..+.++|+++|++|+|||||+++|.+..+.....++++... ...+. .....+.||||||++.|..++..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34678999999999999999999999887766555554443 33333 3445789999999999999999999999999
Q ss_pred EEEEeCCCCCcHHHHH-HHHHH----HHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 144 VLVVAADDGVMPQTRE-AIAHA----KISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 144 IlVvda~~g~~~qt~e-~i~~~----~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
++|+|+++....+... ++..+ ...++|+++|+||+|+...... .....+.. .+ .++++++||++|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~ 171 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE------SW--GATFMESSAREN 171 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH------HH--TCEEEECCTTCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH------Hh--CCeEEEEeCCCC
Confidence 9999999843222222 22222 2347899999999998653211 11111111 12 248999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.|++++|+.|....
T Consensus 172 ~~v~~l~~~l~~~i 185 (201)
T 3oes_A 172 QLTQGIFTKVIQEI 185 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 186
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.70 E-value=6.2e-17 Score=170.00 Aligned_cols=153 Identities=25% Similarity=0.298 Sum_probs=114.5
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC----
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD---- 997 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d---- 997 (1527)
+++|+++|++|+|||||+++|+..... ..+...++|.+.....+.+++..+.||||||+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 65 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSA---------------VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKW 65 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCee---------------eccCCCCceecceEEEEEeCCceEEEEECCCCCCccch
Confidence 368999999999999999999865211 1223456677777777888899999999999987
Q ss_pred ---chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 998 ---FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 998 ---f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
+...+...++.+|++++|+|++++.......+...+...++|+++|+||+|+.+.+ +++.+ +. .
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~----~~----~ 132 (161)
T 2dyk_A 66 EKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE-----LYLGP----LY----G 132 (161)
T ss_dssp CHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG-----GGCGG----GG----G
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch-----HhHHH----HH----h
Confidence 34556667899999999999999877777777777777899999999999986531 11111 11 1
Q ss_pred cCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+ +++++||++|. |++++++.+.+.+|
T Consensus 133 ~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 133 LGFGDPIPTSSEHAR----------GLEELLEAIWERLP 161 (161)
T ss_dssp GSSCSCEECBTTTTB----------SHHHHHHHHHHHCC
T ss_pred CCCCCeEEEecccCC----------ChHHHHHHHHHhCc
Confidence 234 68999999998 99999999998876
No 187
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.70 E-value=9.7e-18 Score=179.47 Aligned_cols=163 Identities=31% Similarity=0.354 Sum_probs=124.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+...-.. ...+++|.+.....+.+++..++||||||+.+|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE----------------QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC----------------SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc----------------CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHH
Confidence 345799999999999999999998642111 1123444444555677889999999999999998
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc--CC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL--DF 1077 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~--~~ 1077 (1527)
....+.+..+|++++|+|++++...++...+..+...++|+++|+||+|+...+.++....+ .......... .+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQEL----MEYNLVPEEWGGDT 145 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHH----TTTTCCBTTTTSSE
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHH----HhcCcChhHcCCcc
Confidence 88888889999999999999998899988888887789999999999999876544333322 2222111122 25
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
|++++||++|. |+++|++.|.+.+.
T Consensus 146 ~~~~~Sa~~~~----------gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 146 IFCKLSAKTKE----------GLDHLLEMILLVSE 170 (178)
T ss_dssp EEEECCSSSSH----------HHHHHHHHHHHHHH
T ss_pred cEEEEecCCCC----------CHHHHHHHHHHhhh
Confidence 89999999998 99999999987653
No 188
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.70 E-value=8.8e-17 Score=176.10 Aligned_cols=162 Identities=18% Similarity=0.152 Sum_probs=106.3
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
...+..+|+++|++|+|||||+++|.+..+.....+++. +.....+..++. .+.||||||++.|..++..+++.+|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSS-EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345678999999999999999999998876555444443 333445566665 67799999999999888899999999
Q ss_pred EEEEEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhh----------hcccccccCCCCcE
Q psy1758 143 VVLVVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLDRIKQDLIS----------EQVIPEEYGGASPF 208 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~----------~~~~~~~~~~~~~v 208 (1527)
+++|+|+++....+.. .++..+.. .++|+++|+||+|+...... ...+.. .......+ +..++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 171 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKV--LIELDKCKEKPVPEEAAKLLAEEI-KAASY 171 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHH--HHHHHTTTCCCCCHHHHHHHHHHH-TCSEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhh--hhhhcccccccCCHHHHHHHHHhc-CCcEE
Confidence 9999999984332222 12222332 37999999999999753211 000000 00001111 22489
Q ss_pred EEeeccCCCChhHHHHHHHHHH
Q psy1758 209 ISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
+++||++|.|++++|+.|....
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998654
No 189
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.70 E-value=9.7e-18 Score=186.97 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=112.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc--cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV--FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~--~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|....+. .....++|.......+...+..+.||||||++.|..++..+++.+|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 45578999999999999999997665543 3445566666655555444568999999999999998999999999999
Q ss_pred EEEeCCCCCcHHHHHHH-HHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 145 LVVAADDGVMPQTREAI-AHAKI--SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 145 lVvda~~g~~~qt~e~i-~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+|+++....+....| ..+.. .++|+++|+||+|+.+...... .......+ .++++++||++|.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~------~~~~~~~~--~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 93 IMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK------SIVFHRKK--NLQYYDISAKSNYNFEK 164 (221)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGG------GCCHHHHH--TCEEEECBGGGTBTTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHH------HHHHHHHc--CCEEEEEeCCCCCCHHH
Confidence 99999985433322222 22222 3789999999999976332110 00011111 25899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|++|...
T Consensus 165 l~~~l~~~ 172 (221)
T 3gj0_A 165 PFLWLARK 172 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999754
No 190
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.70 E-value=3.3e-17 Score=179.22 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=104.7
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEE---eCCeEEEEEeCCChhhHHHHH---Hhhcc
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVV---TNHGSITFLDTPGHEAFTAMR---ARGAK 138 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~---~~~~~i~~iDTPG~e~f~~~~---~~~~~ 138 (1527)
...+.++|+++|++|+|||||++++.+... .....+.+......... .....+.||||||++.|..+. ..+++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 445678999999999999999998877432 22322322222222222 233589999999999998877 78899
Q ss_pred ccCEEEEEEeCCCCCcHH---HHHHHHHH--HHcCCCEEEEEEcccCCcchhH-----HHHHHHhhhccccccc--CCCC
Q psy1758 139 VTDIVVLVVAADDGVMPQ---TREAIAHA--KISGVPLIVAINKIDKLDINLD-----RIKQDLISEQVIPEEY--GGAS 206 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~q---t~e~i~~~--~~~~vpiIvviNKiDl~~~~~~-----~~~~~l~~~~~~~~~~--~~~~ 206 (1527)
.+|++|+|+|+++..... +..++..+ ...++|+++|+||+|+.+.+.. .+....... ..... ...+
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDD--LADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHH--HHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHH--HHHhhhhcCCc
Confidence 999999999999973222 22233332 2347899999999998763211 111111111 11101 2246
Q ss_pred cEEEeeccCCCChhHHHHHHHH
Q psy1758 207 PFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 207 ~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
+++++||++ .||+++|+.|+.
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHH
T ss_pred ceEEEEech-hhHHHHHHHHHH
Confidence 899999999 999999999864
No 191
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.70 E-value=1.6e-16 Score=166.99 Aligned_cols=152 Identities=24% Similarity=0.295 Sum_probs=108.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|.+..+.....++++... ...+..++. .+.+|||||++.|..++..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 46899999999999999999998876554444443332 334445554 578999999999999999999999999999
Q ss_pred EeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+. ..++..+.. .++|+++|+||+|+.+... ......+.. .+ .++++++||++|.|++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi~ 153 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR------SY--GIPYIETSAKTRQGVE 153 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH------HH--TCCEEEECTTTCTTHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH------Hc--CCeEEEecCCCCCCHH
Confidence 99987432221 222222222 3799999999999875221 111222221 11 2489999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
+++++|...
T Consensus 154 ~l~~~l~~~ 162 (166)
T 2ce2_X 154 DAFYTLVRE 162 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
No 192
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.70 E-value=3.3e-17 Score=181.25 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=109.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|....+.....+++.... ...+..++ ..+.||||||++.|..++..+++.+|++++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 457899999999999999999998887655544443322 33444555 378999999999999999999999999999
Q ss_pred EEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhH----------HHHHHHhhhcccccccCCCCcEEEe
Q psy1758 146 VVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLD----------RIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 146 Vvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~----------~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
|+|+++....+.. .++..+.. .++|+++|+||+|+.+.... .....+. ..+ +..+++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~------~~~-~~~~~~~~ 159 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR------KQI-GAAAYIEC 159 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH------HHH-TCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH------HHc-CCceEEEc
Confidence 9999984322221 22233333 27999999999998653210 1111111 111 12489999
Q ss_pred eccCCCChhHHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~~ 230 (1527)
||++|.|++++|+.|....
T Consensus 160 Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999997553
No 193
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=1.7e-16 Score=172.02 Aligned_cols=155 Identities=22% Similarity=0.276 Sum_probs=101.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....++++... ...+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4557999999999999999999998876554444443332 344555554 5889999999999999999999999999
Q ss_pred EEEeCCCCCcHHHHH-HHHHHH----HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQTRE-AIAHAK----ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt~e-~i~~~~----~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+... ++..+. ..++|+++|+||+|+..... ......+.. .+ .++++++||++|.|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 169 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK------SY--GIPFIETSAKTRQG 169 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH------HH--TCCEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH------Hc--CCeEEEEeCCCCCC
Confidence 999999843322222 222222 24789999999999875221 111122211 11 14899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
+++++++|....
T Consensus 170 i~~l~~~l~~~~ 181 (190)
T 3con_A 170 VEDAFYTLVREI 181 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 194
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=4.2e-17 Score=201.43 Aligned_cols=158 Identities=25% Similarity=0.243 Sum_probs=99.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+|+|++|+|||||+|+|++.. ....+...|+|.+.....+.++++.++||||||+.++..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~---------------~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE---------------RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE 296 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---------------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh
Confidence 44679999999999999999998651 122344578899988889999999999999999998876
Q ss_pred HHHH--------HHHhcCEEEEEEeCCCCCCh----hHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 1001 EVER--------ILSMVDNVLLLIDAVEGPMP----QTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 1001 ev~~--------~l~~aD~ailVVDa~~G~~~----qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
.++. ++..+|++|+|+|++++... ....++..+. ++|+++|+||+|+...+.... +++.+ .
T Consensus 297 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~-~~l~~----~ 369 (476)
T 3gee_A 297 EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI-RAIAD----G 369 (476)
T ss_dssp -----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH-HHHHH----H
T ss_pred HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH-HHHHh----c
Confidence 6544 35889999999999998766 3333333322 789999999999987653221 11221 1
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC-CCCC
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP-VHKD 1116 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp-~p~~ 1116 (1527)
. ..|++++||++|. |+++|+++|.+.++ .+..
T Consensus 370 ~------~~~~i~vSAktg~----------GI~eL~~~i~~~~~~~~~~ 402 (476)
T 3gee_A 370 T------GTEVIGISALNGD----------GIDTLKQHMGDLVKNLDKL 402 (476)
T ss_dssp H------TSCEEECBTTTTB----------SHHHHHHHHTHHHHSSCCC
T ss_pred C------CCceEEEEECCCC----------CHHHHHHHHHHHHhhccCC
Confidence 0 1479999999998 99999999999887 5543
No 195
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.69 E-value=1.3e-17 Score=192.07 Aligned_cols=149 Identities=21% Similarity=0.275 Sum_probs=113.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH------HHHHhhcc--cc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT------AMRARGAK--VT 140 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~------~~~~~~~~--~a 140 (1527)
.++|+++|++|+|||||+++|++.....+..+|+|.+.....+.. +..+.+|||||++.|. .+...++. .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 468999999999999999999998877788889998877666655 6789999999998775 44455554 69
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|++++|+|+++ ......++..+...++|+++|+||+|+..... ......+.. .+ .+|++++||++|.|+
T Consensus 82 d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~------~l--g~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 82 DSILNVVDATN--LERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY------HL--GVPVVATSALKQTGV 151 (272)
T ss_dssp SEEEEEEEGGG--HHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH------HH--TSCEEECBTTTTBSH
T ss_pred CEEEEEecCCc--hHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH------Hc--CCCEEEEEccCCCCH
Confidence 99999999987 23344455566678999999999999854211 001111111 11 258999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
++|++.+..
T Consensus 152 ~el~~~i~~ 160 (272)
T 3b1v_A 152 DQVVKKAAH 160 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999964
No 196
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.69 E-value=6.2e-17 Score=174.95 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=110.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+...+.+++.... ...+..++ ..+.||||||++.|..++..+++.+|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 3457899999999999999999999887655555554443 23344444 47899999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH-H-HHHHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhh----------hcccccccCCCCcEEE
Q psy1758 145 LVVAADDGVMPQTR-E-AIAHAKI--SGVPLIVAINKIDKLDINLDRIKQDLIS----------EQVIPEEYGGASPFIS 210 (1527)
Q Consensus 145 lVvda~~g~~~qt~-e-~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~----------~~~~~~~~~~~~~v~~ 210 (1527)
+|+|+++....+.. . ++..+.. .++|+++|+||+|+.+.... ..++.. .......+ +..++++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e 160 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVST--LVELSNHRQTPVSYDQGANMAKQI-GAATYIE 160 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHH--HHHHHTTTCCCCCHHHHHHHHHHH-TCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhh--HhhhhhcccCCCCHHHHHHHHHHc-CCcEEEE
Confidence 99999984322221 1 1222222 47899999999999752110 000000 00011111 2358999
Q ss_pred eecc-CCCChhHHHHHHHHH
Q psy1758 211 ISAK-TGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAk-tg~gI~eL~~~l~~~ 229 (1527)
+||+ +|.|++++|+.+...
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHH
T ss_pred eeecCCCcCHHHHHHHHHHH
Confidence 9999 689999999999754
No 197
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.69 E-value=4.6e-17 Score=178.82 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=80.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc--ccccccCCceeEEEEEEEEEeCC----eEEEEEeCCChhhHHHHHHhhccccC
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT--NVVFSEAGGITQHIGAYNVVTNH----GSITFLDTPGHEAFTAMRARGAKVTD 141 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~--~~~~~~~~giT~~~~~~~~~~~~----~~i~~iDTPG~e~f~~~~~~~~~~aD 141 (1527)
+..+|+++|++|+|||||+++|.+. .+.....++++.+.....+.+++ ..+.||||||++.|..++..+++.+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 4578999999999999999999988 55555555555566666777774 47999999999999999999999999
Q ss_pred EEEEEEeCCCCCcHHH-HHHHHHHHH------cCCCEEEEEEcccCCc-chh--HHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 142 IVVLVVAADDGVMPQT-REAIAHAKI------SGVPLIVAINKIDKLD-INL--DRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt-~e~i~~~~~------~~vpiIvviNKiDl~~-~~~--~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
++++|+|+++....+. ..++..+.. .++|+++|+||+|+.+ ... ......+.. .++ ++++++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~------~~~--~~~~~~ 170 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT------TNT--LDFFDV 170 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH------HTT--CEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH------HcC--CEEEEe
Confidence 9999999998543222 223333332 5789999999999975 211 111111111 122 589999
Q ss_pred eccC-CCChhHHHHHHHHH
Q psy1758 212 SAKT-GVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAkt-g~gI~eL~~~l~~~ 229 (1527)
||++ |.|++++|++|...
T Consensus 171 Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 171 SANPPGKDADAPFLSIATT 189 (208)
T ss_dssp CC-------CHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHH
Confidence 9999 99999999999754
No 198
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.69 E-value=1.1e-16 Score=173.03 Aligned_cols=154 Identities=25% Similarity=0.316 Sum_probs=108.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCC-----------hhhHHHHHHhhcc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG-----------HEAFTAMRARGAK 138 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG-----------~e~f~~~~~~~~~ 138 (1527)
++|+++|++|+|||||+++|.+..+..+..+++|.+.....+ . .+.+||||| ++.|..++..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999998887888888776555443 2 789999999 7888888776655
Q ss_pred c----cCEEEEEEeCCCC-----------CcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-cccc
Q psy1758 139 V----TDIVVLVVAADDG-----------VMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI-PEEY 202 (1527)
Q Consensus 139 ~----aD~~IlVvda~~g-----------~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~-~~~~ 202 (1527)
. +++++.|+|+.+. ..+++.+....+...++|+++|+||+|+.... ......+...... ...+
T Consensus 78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 156 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEI 156 (190)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGH
T ss_pred hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhcc
Confidence 4 5566666665531 11122334455566789999999999998754 2222222221111 0011
Q ss_pred CCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 203 GGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 203 ~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
..+++++||++|.|+++++++|....
T Consensus 157 --~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 157 --DKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp --HHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --CCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 13689999999999999999997653
No 199
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.69 E-value=2.9e-17 Score=192.24 Aligned_cols=159 Identities=20% Similarity=0.217 Sum_probs=118.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC-C--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA-D-- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~-d-- 997 (1527)
+..+|+|+||+|+|||||+++|++....+ .....++|.....+.+.+++.+++++||||+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i---------------~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI---------------TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE---------------CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc---------------cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch
Confidence 34589999999999999999999762211 11223445444445677889999999999998 3
Q ss_pred ------chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 998 ------FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 998 ------f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
|...+.+++..+|++++|+|+++ +.++++.+++.+...+.|.++|+||+|+... .+...+.+.+....
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~-~~~~~~~l~~l~~~---- 145 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE-KADLLPHLQFLASQ---- 145 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC-HHHHHHHHHHHHTT----
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc-HHHHHHHHHHHHHh----
Confidence 33334556788999999999988 8899998888888789999999999999752 22222333222111
Q ss_pred ccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1072 EEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1072 ~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+ +++++||++|. |++.|++.+.+.+|.
T Consensus 146 ---~~~~~~i~iSA~~g~----------~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 146 ---MNFLDIVPISAETGL----------NVDTIAAIVRKHLPE 175 (301)
T ss_dssp ---SCCSEEEECCTTTTT----------THHHHHHHHHTTCCB
T ss_pred ---cCcCceEEEECCCCC----------CHHHHHHHHHHhCCc
Confidence 123 58999999998 999999999998874
No 200
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.3e-16 Score=174.33 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=109.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....++++... ...+..++ ..+.||||||++. ..++..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 3568999999999999999999999887665555555443 23344454 4689999999988 777788889999999
Q ss_pred EEEeCCCCCc----HHHHHHHHHH-HHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGVM----PQTREAIAHA-KISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i~~~-~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|+++... ..|.+.+... ...++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT------EL--ACAFYECSACTGE 175 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HH--TSEEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH------Hh--CCeEEEECCCcCC
Confidence 9999998322 1222222222 2358999999999999653111 11111111 11 2589999999999
Q ss_pred -ChhHHHHHHHHHH
Q psy1758 218 -GINKLLENISLQA 230 (1527)
Q Consensus 218 -gI~eL~~~l~~~~ 230 (1527)
|++++|++|....
T Consensus 176 ~gi~~l~~~l~~~i 189 (196)
T 2atv_A 176 GNITEIFYELCREV 189 (196)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 9999999997553
No 201
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=172.42 Aligned_cols=153 Identities=12% Similarity=0.147 Sum_probs=104.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+++...+ ...+..++. .+.||||||++.|..+ ..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 4557999999999999999999999887665555554443 233444543 6889999999988764 56889999999
Q ss_pred EEEeCCCCCcHHHH-HHHHHHHH------cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeec-c
Q psy1758 145 LVVAADDGVMPQTR-EAIAHAKI------SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISA-K 214 (1527)
Q Consensus 145 lVvda~~g~~~qt~-e~i~~~~~------~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSA-k 214 (1527)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+... ......+.. .+ .++++++|| +
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~e~Sa~~ 168 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG------RF--GCLFFEVSACL 168 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH------HH--TCEEEECCSSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH------Hc--CCcEEEEeecC
Confidence 99999974322221 12222221 4899999999999964211 111111111 12 248999999 8
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.||+++|+.|...
T Consensus 169 ~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 169 DFEHVQHVFHEAVRE 183 (187)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH
Confidence 999999999999754
No 202
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.68 E-value=1.9e-16 Score=169.74 Aligned_cols=148 Identities=11% Similarity=0.176 Sum_probs=102.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.. ..+++.... ...+..++. .+.||||||++.+ .+++.+|++++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~d~~il 78 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF 78 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCCH-----HHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCchh-----HHHHhCCEEEE
Confidence 45789999999999999999999988754 344333222 344555554 6889999999873 45678999999
Q ss_pred EEeCCCCCcHHHHH----HHHHHHH---cCCCEEEEEEcccCCcc-----hhHHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 146 VVAADDGVMPQTRE----AIAHAKI---SGVPLIVAINKIDKLDI-----NLDRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 146 Vvda~~g~~~qt~e----~i~~~~~---~~vpiIvviNKiDl~~~-----~~~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
|+|+++....+... .+..+.. .++|+++|+||+|+... ...+. ..+.. .+ ..++++++||
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-~~~~~------~~-~~~~~~~~Sa 150 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA-RALXA------DM-KRCSYYETXA 150 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH-HHHHH------HH-SSEEEEEEBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH-HHHHH------hh-cCCeEEEEec
Confidence 99999844332222 2333332 47899999999998421 11111 11111 11 1358999999
Q ss_pred cCCCChhHHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQA 230 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~~ 230 (1527)
++|.|++++|+.|....
T Consensus 151 ~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 151 TYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp TTTBTHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH
Confidence 99999999999997543
No 203
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.68 E-value=1.7e-17 Score=201.50 Aligned_cols=153 Identities=22% Similarity=0.292 Sum_probs=116.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCe-EEEEEeCCChhhHHHH-------HHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEAFTAM-------RARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~e~f~~~-------~~~~~ 137 (1527)
...++|+++|++|||||||+++|.+..+ ..+..+++|.+.....+.+.+. +++||||||+++|..+ ...++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 3557999999999999999999998886 4667789999988888888776 8999999999877433 45577
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+.+|++|+|+|+ +...++.+++..+...++|+++|+||+|+......+....+. ..+ .++++++||++|.
T Consensus 112 ~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~------~~~--g~~v~~vSAktg~ 181 (423)
T 3qq5_A 112 YRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYE------SRY--EAKVLLVSALQKK 181 (423)
T ss_dssp TSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSS------CCT--TCCCCCCSSCCTT
T ss_pred hcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHH------HHc--CCCEEEEECCCCC
Confidence 889999999999 678888889999998999999999999998755442222221 122 2589999999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
|++++++.|...
T Consensus 182 gI~eL~~~L~~~ 193 (423)
T 3qq5_A 182 GFDDIGKTISEI 193 (423)
T ss_dssp STTTHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 999999999754
No 204
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.67 E-value=1.4e-16 Score=196.46 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=117.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR------------ 133 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~------------ 133 (1527)
...++|+++|++|+|||||+++|.+... ..+..+|+|++.....+.+++..+.+|||||+..+....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 3568999999999999999999998874 578889999998888899999999999999986544332
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
..++..+|++++|+|++++...+.......+...++|+++|+||+|+.+.+. .+....+.... ......|+++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 333 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKL----YFIDYSPLIF 333 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC----GGGTTSCEEE
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHh----ccCCCCcEEE
Confidence 2456789999999999998888877777777788999999999999976332 12222221111 1113468999
Q ss_pred eeccCCCChhHHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~~ 230 (1527)
+||++|.|+++|++.+....
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999997554
No 205
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.67 E-value=4.3e-17 Score=200.58 Aligned_cols=154 Identities=25% Similarity=0.321 Sum_probs=115.0
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH--------HH
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM--------RA 134 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~--------~~ 134 (1527)
.....+.+|+++|++|+|||||+|+|.+... ..+..+++|++.....+.+++.++.||||||+..+... ..
T Consensus 219 ~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~ 298 (462)
T 3geh_A 219 ELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSR 298 (462)
T ss_dssp HHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------
T ss_pred hhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHh
Confidence 3445677899999999999999999998765 46777899999888888889999999999998766433 23
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.++..+|++++|+|++++...+..+++..+. +.|+++|+||+|+....... ....+....+++++||+
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~----------~~~~~~~~~~~i~iSAk 366 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT----------SLEYPENITQIVHTAAA 366 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST----------TCCCCTTCCCEEEEBTT
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH----------HHHHhccCCcEEEEECC
Confidence 4678899999999999988887777666654 47999999999997643211 11122234689999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|+++|++.|...
T Consensus 367 tg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 367 QKQGIDSLETAILEI 381 (462)
T ss_dssp TTBSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 206
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.67 E-value=1.4e-16 Score=175.81 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=110.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+...+.+++..+. ...+..++ ..+.||||||++.|..++..+++.+|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 3557899999999999999999999888665556555444 23444444 47899999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhh----------hcccccccCCCCcEEE
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLDRIKQDLIS----------EQVIPEEYGGASPFIS 210 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~----------~~~~~~~~~~~~~v~~ 210 (1527)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+.... ..++.. .......+ +..++++
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e 181 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVST--LVELSNHRQTPVSYDQGANMAKQI-GAATYIE 181 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHH--HHHHHTTTCCCCCHHHHHHHHHHH-TCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhh--hhhhcccccCCCCHHHHHHHHHHc-CCCEEEE
Confidence 99999984322221 12222322 47899999999999752110 000000 00011111 2358999
Q ss_pred eecc-CCCChhHHHHHHHHH
Q psy1758 211 ISAK-TGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAk-tg~gI~eL~~~l~~~ 229 (1527)
+||+ +|.||+++|+.+...
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHH
Confidence 9999 689999999999754
No 207
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.9e-16 Score=174.06 Aligned_cols=158 Identities=17% Similarity=0.198 Sum_probs=105.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhh-HHHHHHhhccccCE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEA-FTAMRARGAKVTDI 142 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~-f~~~~~~~~~~aD~ 142 (1527)
....+|+++|.+|+|||||+++|.+... .....++++.+.....+..++. .+.+|||+|++. +..++..+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 3457899999999999999999986543 2233334444444455566665 567899999887 56677777899999
Q ss_pred EEEEEeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 143 VVLVVAADDGVMPQTR-EAIAHAK----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~-e~i~~~~----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+++|||+++....+.. .++..+. ..++|+++|+||+|+.+......... ......+ .++++++||++|.
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~----~~~a~~~--~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG----RACAVVF--DCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH----HHHHHHH--TCEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH----HHHHHHc--CCEEEEEeCCCCC
Confidence 9999999983322222 2222232 24789999999999964211100000 0001112 2589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
||+++|+.|....
T Consensus 189 ~v~elf~~l~~~i 201 (211)
T 2g3y_A 189 NVKELFEGIVRQV 201 (211)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
No 208
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.67 E-value=2.2e-16 Score=198.05 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=115.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|.+|+|||||+++|.+..+.. ..+ |.+.....+.+.+..+.||||||++.|..++..+++.+|++|+|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIP--TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCC--CSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCC--ccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 345799999999999999999999887532 333 44555566778888999999999999999999999999999999
Q ss_pred EeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQTR-EAIAHAK----ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt~-e~i~~~~----~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
||+++....+.. ..+..+. ..++|+|+|+||+|+.+... .+....+.. .......++++++||++|.||+
T Consensus 397 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 397 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL----TRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTC----TTCCSSCEEEEECBTTTTBTHH
T ss_pred EECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhch----hhhhcCCeEEEEEECCCCCCHH
Confidence 999985433222 2222222 24789999999999976422 222222211 1111234589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|++|...
T Consensus 473 ~l~~~l~~~ 481 (497)
T 3lvq_E 473 EGLTWLTSN 481 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
No 209
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.67 E-value=5.2e-17 Score=200.68 Aligned_cols=154 Identities=23% Similarity=0.342 Sum_probs=122.0
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh-hHH--------HHHH
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE-AFT--------AMRA 134 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e-~f~--------~~~~ 134 (1527)
....+++|+++|++|+|||||+|+|.+... ..+..+++|++.....+.+++.++.||||||+. .+. ....
T Consensus 239 ~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~ 318 (482)
T 1xzp_A 239 LLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTL 318 (482)
T ss_dssp HHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred hccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHH
Confidence 344568999999999999999999998864 578889999999988999999999999999987 543 3345
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.+++.+|++|+|+|++++...+..+.+..+ .+.|+++|+||+|+.+.... .++... .+...+++++||+
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~---~~~~~~------~~~~~~~i~iSAk 387 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINE---EEIKNK------LGTDRHMVKISAL 387 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCH---HHHHHH------HTCSTTEEEEEGG
T ss_pred HHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCH---HHHHHH------hcCCCcEEEEECC
Confidence 678899999999999998777666666554 47899999999999753111 111111 1122589999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|+++|+++|...
T Consensus 388 tg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 388 KGEGLEKLEESIYRE 402 (482)
T ss_dssp GTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 210
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.66 E-value=2.5e-18 Score=188.48 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=108.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.||||||++.|..++..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 34578999999999999999999988877666677777777777777774 7899999999999988889999999999
Q ss_pred EEEeCCCCCcHHHHH-HHHHHH---HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 145 LVVAADDGVMPQTRE-AIAHAK---ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 145 lVvda~~g~~~qt~e-~i~~~~---~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+|+++....+... ++..+. ..++|+++|+||+|+.+....... ........ ..++++++||++|.|++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~----~~~~~~~~--~~~~~~~vSA~~g~gv~ 184 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT----TAKEFADS--LGIPFLETSAKNATNVE 184 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSC----C-CHHHHT--TTCCBCCCCC---HHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHH----HHHHHHHH--cCCeEEEEECCCCCCHH
Confidence 999999854433322 222332 237899999999999653210000 00000111 13589999999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
++|++|..
T Consensus 185 ~l~~~l~~ 192 (199)
T 3l0i_B 185 QSFMTMAA 192 (199)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99999863
No 211
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.66 E-value=9.5e-17 Score=183.36 Aligned_cols=150 Identities=22% Similarity=0.293 Sum_probs=115.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH-
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE- 1001 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e- 1001 (1527)
++|+++|++|+|||||+++|++... .....+|+|++.....+.+++..++||||||+.+|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~----------------~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ----------------RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE----------------EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC----------------CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccc
Confidence 6899999999999999999975421 11234688999999999999999999999999988742
Q ss_pred ---------HHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhc
Q psy1758 1002 ---------VERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLC 1069 (1527)
Q Consensus 1002 ---------v~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~ 1069 (1527)
...++ ..+|++|+|+|++. ......++..+.+.++|+++|+||+|+...+ .....+++...
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~----- 138 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESL----- 138 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHH-----
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHH-----
Confidence 22344 78999999999987 3455566677778899999999999975432 11122233222
Q ss_pred ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1070 ~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
+.+|++++||++|. |+++|++.+.+.
T Consensus 139 -----lg~~vi~~SA~~g~----------gi~el~~~i~~~ 164 (256)
T 3iby_A 139 -----LGCSVIPIQAHKNI----------GIPALQQSLLHC 164 (256)
T ss_dssp -----HCSCEEECBGGGTB----------SHHHHHHHHHTC
T ss_pred -----cCCCEEEEECCCCC----------CHHHHHHHHHhh
Confidence 24689999999998 999999999876
No 212
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.65 E-value=2.5e-16 Score=171.17 Aligned_cols=169 Identities=20% Similarity=0.208 Sum_probs=114.4
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeE-EEEecCeEEEEEeCCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC-SIEYNGTRINIIDTPGHAD 997 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~-~~~~~~~~iniiDTPGh~d 997 (1527)
.....+|+++|++|+|||||++.|.......... . ........++..|.+...... .+....+.++||||||+.+
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~-~---~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKG-E---MVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBC-C---CEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccc-c---ccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 3556799999999999999997765432111000 0 000011112223333332222 3334457899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH---------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK---------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~---------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
|......+++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+.+... .+++.+.+..
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~- 162 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALP---VEMVRAVVDP- 162 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCC---HHHHHHHHCT-
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccC---HHHHHHHHHh-
Confidence 99999999999999999999997666555555544433 4789999999999976522 2333333322
Q ss_pred cccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1069 CATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1069 ~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+ +++++||++|. |++++++.+.+.+
T Consensus 163 ------~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~i 190 (198)
T 3t1o_A 163 ------EGKFPVLEAVATEGK----------GVFETLKEVSRLV 190 (198)
T ss_dssp ------TCCSCEEECBGGGTB----------THHHHHHHHHHHH
T ss_pred ------cCCceEEEEecCCCc----------CHHHHHHHHHHHH
Confidence 234 79999999998 9999999988765
No 213
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=4.3e-16 Score=168.67 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=111.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|++|+|||||+++|+..... . ... |+......+.+++..++||||||+.+|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-------------~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--H-------------TSP----TIGSNVEEIVINNTRFLMWDIGGQESLRS 75 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--E-------------EEC----CSCSSCEEEEETTEEEEEEECCC----CG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--c-------------CcC----CCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 4578999999999999999999854211 0 011 22223345667889999999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+..+++.+|++|+|+|++++.. ......+..+.. .+.|+++|+||+|+.+... .+++.+.+.... ....
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~--~~~~ 150 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTS--IKDH 150 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGG--CCSS
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC---HHHHHHHhChhh--hcCC
Confidence 88899999999999999998643 333444444443 4789999999999976432 223333222110 1123
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN 1117 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~ 1117 (1527)
.++++++||++|. |+++++++|.+.++.+...
T Consensus 151 ~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 151 QWHIQACCALTGE----------GLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp CEEEEECBTTTTB----------THHHHHHHHHHHHCC----
T ss_pred CcEEEEccCCCCc----------CHHHHHHHHHHHHHHHhhh
Confidence 5689999999998 9999999999988766543
No 214
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.65 E-value=2.6e-16 Score=170.29 Aligned_cols=159 Identities=17% Similarity=0.208 Sum_probs=102.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc--ccccccCCceeEEEEEEEEEe-----CCeEEEEEeCCChhhHHHHHHhhccccC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT--NVVFSEAGGITQHIGAYNVVT-----NHGSITFLDTPGHEAFTAMRARGAKVTD 141 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~--~~~~~~~~giT~~~~~~~~~~-----~~~~i~~iDTPG~e~f~~~~~~~~~~aD 141 (1527)
..+|+++|++|+|||||+++|.+. .+...+.++++.++....+.. ....+.+|||||++.|..++..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 368999999999999999999885 333344555666665544433 3447999999999999998888899999
Q ss_pred EEEEEEeCCCCC-cHH-HHHHHHHHHH--cCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCC--CCcEEEeecc
Q psy1758 142 IVVLVVAADDGV-MPQ-TREAIAHAKI--SGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGG--ASPFISISAK 214 (1527)
Q Consensus 142 ~~IlVvda~~g~-~~q-t~e~i~~~~~--~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~--~~~v~~iSAk 214 (1527)
++++|+|++++. ... ...++..+.. .+.|+++|+||+|+.+..... ........ ....++- ..+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKE--LLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHH--TTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHH--HHHhcCCcchhheEEEecc
Confidence 999999998852 111 1222222222 478999999999997632211 11111111 1111211 0139999999
Q ss_pred CCC-ChhHHHHHHHHH
Q psy1758 215 TGV-GINKLLENISLQ 229 (1527)
Q Consensus 215 tg~-gI~eL~~~l~~~ 229 (1527)
+|. |+++|++.|...
T Consensus 160 ~~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 160 EESDALAKLRKTIINE 175 (184)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHH
Confidence 997 999999998644
No 215
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.65 E-value=4.8e-16 Score=169.08 Aligned_cols=161 Identities=16% Similarity=0.171 Sum_probs=112.0
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC--
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA-- 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~-- 996 (1527)
.....+|+++|++|+|||||+++|+..... .......|.|....... + +..++||||||+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNL--------------ARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFA 82 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEE--E-TTTEEEEECCCBCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc--------------cccCCCCCceeeEEEEE--E-CCcEEEEECCCCCcc
Confidence 345689999999999999999999865210 01122345555443332 2 3479999999943
Q ss_pred --------CchHHHHHHHHhc---CEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHH
Q psy1758 997 --------DFGGEVERILSMV---DNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDL 1064 (1527)
Q Consensus 997 --------df~~ev~~~l~~a---D~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~ 1064 (1527)
.|...+..+++.+ |++++|+|++++...+...++..+...++|+++|+||+|+...+ .....+++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 162 (195)
T 1svi_A 83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQT 162 (195)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHH
Confidence 4455556666666 99999999999888887777788888899999999999997643 22233444432
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+. . ....+++++||++|. |++++++.|.+.++
T Consensus 163 ~~---~---~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 163 LN---I---DPEDELILFSSETKK----------GKDEAWGAIKKMIN 194 (195)
T ss_dssp HT---C---CTTSEEEECCTTTCT----------THHHHHHHHHHHHT
T ss_pred Hc---c---cCCCceEEEEccCCC----------CHHHHHHHHHHHhc
Confidence 32 1 124689999999998 99999999988764
No 216
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.64 E-value=1.4e-16 Score=184.01 Aligned_cols=155 Identities=23% Similarity=0.330 Sum_probs=118.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG- 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~- 1000 (1527)
..+|+++|++|+|||||+|+|++... .....+|+|++.....+.+++..++||||||+.+|..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~----------------~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ----------------RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE----------------EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC-
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccc
Confidence 35899999999999999999986521 1123468999999999999999999999999998772
Q ss_pred --------HHHH-H--HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhh
Q psy1758 1001 --------EVER-I--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKL 1068 (1527)
Q Consensus 1001 --------ev~~-~--l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l 1068 (1527)
.+.+ + ...+|++|+|+|++. ..+...++..+.+.++|+++|+||+|+...+ .....+++.+
T Consensus 67 ~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~----- 139 (274)
T 3i8s_A 67 SSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSA----- 139 (274)
T ss_dssp ---CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHH-----
T ss_pred cccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHH-----
Confidence 1122 2 268999999999987 3455666677788899999999999985322 1111222222
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+++|++++||++|. |+++|++++.+.++.+
T Consensus 140 -----~lg~~~i~~SA~~g~----------gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 140 -----RLGCPVIPLVSTRGR----------GIEALKLAIDRYKANE 170 (274)
T ss_dssp -----HHTSCEEECCCGGGH----------HHHHHHHHHHTCCCCC
T ss_pred -----hcCCCEEEEEcCCCC----------CHHHHHHHHHHHHhcC
Confidence 224689999999998 9999999999888654
No 217
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.64 E-value=6.5e-16 Score=181.33 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=111.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEe-CCeEEEEEeCCChhhH-----HHHHHhhccccC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVT-NHGSITFLDTPGHEAF-----TAMRARGAKVTD 141 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~-~~~~i~~iDTPG~e~f-----~~~~~~~~~~aD 141 (1527)
..+|+++|++|+|||||+++|.+.. ...+..++.|++.....+.+ ++..+.+|||||++.| ..++..+++.+|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence 4689999999999999999988774 33444566777776666665 5668999999999999 556677789999
Q ss_pred EEEEEEeCCCCCcHHHHH----HHHHHHH--cCCCEEEEEEcccCCcchhHH----HHHHHhhhcccccccCC-CCcEEE
Q psy1758 142 IVVLVVAADDGVMPQTRE----AIAHAKI--SGVPLIVAINKIDKLDINLDR----IKQDLISEQVIPEEYGG-ASPFIS 210 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e----~i~~~~~--~~vpiIvviNKiDl~~~~~~~----~~~~l~~~~~~~~~~~~-~~~v~~ 210 (1527)
++|+|+|+++....+... .+..+.. .++|+++|+||+|+.+.+... ..... .......++. .+++++
T Consensus 83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~--~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKN--LSETSSEFGFPNLIGFP 160 (307)
T ss_dssp EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHH--HHHHHHTTTCCSCEEEE
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHH--HHHHHHHcCCCCeEEEE
Confidence 999999999866544333 2333332 379999999999997632221 11111 1111222221 369999
Q ss_pred eeccCCCChhHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENIS 227 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~ 227 (1527)
+||++ .|+.++|..+.
T Consensus 161 tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp CCTTS-SHHHHHHHHHH
T ss_pred eeecC-ChHHHHHHHHH
Confidence 99999 89999988876
No 218
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.64 E-value=6.4e-16 Score=176.92 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=114.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-cccccCCc-eeEEEEEEEEEeCCeEEEEEeCCChhhH-----------HHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGG-ITQHIGAYNVVTNHGSITFLDTPGHEAF-----------TAMR 133 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~g-iT~~~~~~~~~~~~~~i~~iDTPG~e~f-----------~~~~ 133 (1527)
.+.++|+|+|++|+|||||+++|.+.. +..+..++ +|.+.....+.+++..+.||||||+.++ ....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999887 44444444 7888777788889999999999998654 2333
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEE-cccCCcchhHHHHH--------HHhhhcccc
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS-----GVPLIVAIN-KIDKLDINLDRIKQ--------DLISEQVIP 199 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~-----~vpiIvviN-KiDl~~~~~~~~~~--------~l~~~~~~~ 199 (1527)
..+++.+|++|+|+|++. +..+....+..+... +.|+++++| |+|+...+...... .+.... .
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~--~ 176 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC--G 176 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT--T
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHh--C
Confidence 447789999999999996 666666666665544 568777777 99998644333111 011110 0
Q ss_pred cccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 200 EEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 200 ~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
..+....+ +++||++|.|++++|+.|....
T Consensus 177 ~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 177 GRICAFNN-RAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp TCEEECCT-TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecC-cccccccHHHHHHHHHHHHHHH
Confidence 00100112 7899999999999999997654
No 219
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.64 E-value=3.6e-16 Score=179.01 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=118.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+|+|++|+|||||+++|++........ ...++|.......+.|+++.++||||||+.++.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL--------------GSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT--------------TSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC--------------CCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 455799999999999999999999764322111 112366666777788999999999999998874
Q ss_pred HH-----------HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCccEEEEe-ccCCCCCChhhhHH---
Q psy1758 1000 GE-----------VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL-----GFKPIVVVN-KIDRSNARPEWVVD--- 1059 (1527)
Q Consensus 1000 ~e-----------v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~-----glp~IvviN-KiD~~~a~~~~v~~--- 1059 (1527)
.. +..+++.+|++|+|+|++. +..++..++..+.+. +.|+++|+| |+|+.+.+....+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~ 164 (260)
T 2xtp_A 86 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSD 164 (260)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcc
Confidence 32 2225577999999999985 777888888877775 678888888 99998655433221
Q ss_pred --HHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1060 --ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1060 --~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
++......+..... .+..+++||++|. |+++|++.|.+.++.
T Consensus 165 ~~~~~~~~~~~~~~~~--~~~~~~~SA~~~~----------gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 165 NKALSKLVAACGGRIC--AFNNRAEGSNQDD----------QVKELMDCIEDLLME 208 (260)
T ss_dssp CHHHHHHHHHTTTCEE--ECCTTCCHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCeEE--EecCcccccccHH----------HHHHHHHHHHHHHHh
Confidence 12223333322110 0111678999998 999999999988764
No 220
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.63 E-value=9.3e-16 Score=164.47 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=111.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+...-... .+...|.+.......+....+.+.||||||+.+|.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 75 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEF--------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 75 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT--------------SCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCc--------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh
Confidence 4457899999999999999999986521100 01122333333322232234689999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+...++.+|++|+|+|++++.. .....++..+... ++|+++|+||+|+...+. ...+++.+.... .
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 147 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARK-VTAEDAQTYAQE-------N 147 (181)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC-SCHHHHHHHHHH-------T
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccccc-CCHHHHHHHHHH-------c
Confidence 999999999999999999987533 2233444444443 788999999999965431 112233332211 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+|++++||++|. |+++++++|.+.++..
T Consensus 148 ~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 148 GLFFMETSAKTAT----------NVKEIFYEIARRLPRV 176 (181)
T ss_dssp TCEEEECCSSSCT----------THHHHHHHHHHTCC--
T ss_pred CCEEEEEECCCCC----------CHHHHHHHHHHHHHhc
Confidence 4579999999998 9999999999988654
No 221
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.44 E-value=1.9e-17 Score=182.10 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=108.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+++ .+.....+..++. .+.||||||+++|..++..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 466899999999999999999999877654444433 2322333344443 5679999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHHc--CCCEEEEEEcccCCcchhHH-HHH-----HHh--hhcccccccCCCCcEEEee
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKIS--GVPLIVAINKIDKLDINLDR-IKQ-----DLI--SEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~~--~vpiIvviNKiDl~~~~~~~-~~~-----~l~--~~~~~~~~~~~~~~v~~iS 212 (1527)
+|+|+++....+.. .++..+... ++|+++|+||+|+.+..... ... ... ........+ +..+++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKYLECS 185 (204)
Confidence 99999885433322 222233322 78999999999997532100 000 000 000111111 223899999
Q ss_pred ccCCCChhHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISL 228 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~ 228 (1527)
|++|.|++++++.|..
T Consensus 186 A~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIR 201 (204)
Confidence 9999999999999864
No 222
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.63 E-value=4.3e-16 Score=169.99 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=100.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhh-HHHHHHhhccccCEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEA-FTAMRARGAKVTDIV 143 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~-f~~~~~~~~~~aD~~ 143 (1527)
..++|+++|.+|||||||+++|.+... .....++++.+.....+..++. .+.+|||+|++. +..++..+++.+|++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 347899999999999999999986432 2233334444444455666665 567899999876 444556677889999
Q ss_pred EEEEeCCCCCcHHHHH-HHHHHH----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 144 VLVVAADDGVMPQTRE-AIAHAK----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 144 IlVvda~~g~~~qt~e-~i~~~~----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
++|+|+++....+... ++..+. ..++|+++|+||+|+............ .....+ .++++++||++|.|
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~----~~a~~~--~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR----AXAVVF--DXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH----HHHHHT--TCEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH----HHHHHh--CCceEEeccccCCC
Confidence 9999999843222221 222222 247899999999998642111000000 001111 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
|+++|+.+....
T Consensus 159 v~~lf~~l~~~~ 170 (192)
T 2cjw_A 159 VKELFEGIVRQV 170 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
No 223
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.63 E-value=7.9e-16 Score=164.79 Aligned_cols=152 Identities=21% Similarity=0.219 Sum_probs=110.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+|+|++|+|||||+++|+...... .....|+|.+.....+.+++..+.+|||||+.++...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 68 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAI---------------VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE 68 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSC---------------CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcce---------------eeCCCCceeceeeEEEEECCeEEEEEECCCcccchhH
Confidence 3589999999999999999998652111 1223566666666778888989999999999875432
Q ss_pred H--------HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc
Q psy1758 1002 V--------ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 1070 (1527)
Q Consensus 1002 v--------~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~ 1070 (1527)
. ...++.+|++++|+|++++...+...++..+.+. ++|+++|+||+|+.+...+ .
T Consensus 69 ~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~------------~-- 134 (172)
T 2gj8_A 69 VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------------M-- 134 (172)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------------E--
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh------------h--
Confidence 2 2357899999999999987655555555555443 6899999999998543210 0
Q ss_pred cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1071 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1071 ~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
......|++++||++|. |++++++.|.+.++.
T Consensus 135 -~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 135 -SEVNGHALIRLSARTGE----------GVDVLRNHLKQSMGF 166 (172)
T ss_dssp -EEETTEEEEECCTTTCT----------THHHHHHHHHHHC--
T ss_pred -hhccCCceEEEeCCCCC----------CHHHHHHHHHHHhhh
Confidence 01124579999999998 999999999988754
No 224
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=7.5e-16 Score=167.73 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=116.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
++..+|+++|++|+|||||+++|+..... .......|.+.......+....+.++||||||+.+|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD--------------HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH 86 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC--------------TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC--------------CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH
Confidence 45679999999999999999999865211 0112334666555555555566789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+..+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+. ...+++...... .
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~-v~~~~~~~~~~~-------~ 158 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIRE-VPLKDAKEYAES-------I 158 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHT-------T
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc-cCHHHHHHHHHH-------c
Confidence 999999999999999999987533222 3333444443 789999999999864221 112333332222 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+|++++||++|. |++++++.|.+.++..
T Consensus 159 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 159 GAIVVETSAKNAI----------NIEELFQGISRQIPPL 187 (192)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHTCC--
T ss_pred CCEEEEEeCCCCc----------CHHHHHHHHHHHHHhh
Confidence 4689999999998 9999999999988654
No 225
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.63 E-value=4.4e-16 Score=169.82 Aligned_cols=166 Identities=17% Similarity=0.232 Sum_probs=115.1
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 996 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~ 996 (1527)
.+.....+|+++|++|+|||||+++|+....... ......|. ....+.+.++.++||||||+.
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-------------~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-------------HITATVGY----NVETFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC-----------------CCCCCSSE----EEEEEEETTEEEEEEEECCSG
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc-------------ccccccce----eEEEEEeCCEEEEEEECCCCH
Confidence 3455678999999999999999999986522110 00112233 334567889999999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHHc-----------CCccEEEEeccCCCCCChhhhHHHHHHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALKL-----------GFKPIVVVNKIDRSNARPEWVVDATFDL 1064 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~~-----------glp~IvviNKiD~~~a~~~~v~~~~~~~ 1064 (1527)
+|...+..+++.+|++|+|+|++++.. .+....+..+... ++|+++|+||+|+..... .+++.+.
T Consensus 75 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~ 151 (199)
T 4bas_A 75 KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT---AAELVEI 151 (199)
T ss_dssp GGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC---HHHHHHH
T ss_pred hHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC---HHHHHHH
Confidence 999988889999999999999998642 2333444444443 899999999999976532 2222222
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+. +........++++.+||++|. |++++++.|.+.+..
T Consensus 152 ~~-~~~~~~~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 152 LD-LTTLMGDHPFVIFASNGLKGT----------GVHEGFSWLQETASR 189 (199)
T ss_dssp HT-HHHHHTTSCEEEEECBTTTTB----------THHHHHHHHHHHHHH
T ss_pred hc-chhhccCCeeEEEEeeCCCcc----------CHHHHHHHHHHHHHH
Confidence 21 110002245689999999998 999999999887753
No 226
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.62 E-value=1.1e-15 Score=161.74 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=113.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+..... ...+...|.+.......+...++.++||||||+.+|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 69 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFH--------------EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCC--------------TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh
Confidence 34578999999999999999999864211 0112334555555544454456789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......++.+|++++|+|++++... ....++..+... ++|+++|.||+|+...+.. ..++...... ..
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~ 141 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAV-DFQEAQSYAD-------DN 141 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHH-------HT
T ss_pred hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccccc-CHHHHHHHHH-------Hc
Confidence 9999999999999999999875322 223333444433 6788899999998643211 1122222221 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+|++++||++|. |+++++++|.+.++
T Consensus 142 ~~~~~~~Sa~~g~----------gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 142 SLLFMETSAKTSM----------NVNEIFMAIAKKLP 168 (170)
T ss_dssp TCEEEECCTTTCT----------THHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 4679999999998 99999999998875
No 227
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.62 E-value=1.3e-15 Score=165.24 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=115.2
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC--
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH-- 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh-- 995 (1527)
+....++|+++|++|+|||||+++|+..... ......|.|..... ...+.++.+|||||+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~t~~~~~---~~~~~~~~i~Dt~G~~~ 80 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA---------------FVSKTPGKTRSINF---YLVNSKYYFVDLPGYGY 80 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS---------------CCCSSCCCCCCEEE---EEETTTEEEEECCCBSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc---------------cccCCCCCccCeEE---EEECCcEEEEECCCCcc
Confidence 3345679999999999999999999876311 11122344443322 223457899999994
Q ss_pred --------CCchHHHHHHHHhc---CEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHH
Q psy1758 996 --------ADFGGEVERILSMV---DNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFD 1063 (1527)
Q Consensus 996 --------~df~~ev~~~l~~a---D~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~ 1063 (1527)
..|...+..+++.+ |++++|+|++.+...+...++..+...++|+++|+||+|+.+.+ .+...+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~ 160 (195)
T 3pqc_A 81 AKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRK 160 (195)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHH
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHH
Confidence 33444455555555 99999999999888888888888888899999999999997543 2333344444
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+... ..+|++++||++|. |++++++++.+.++
T Consensus 161 ~~~~~------~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 161 VFSKY------GEYTIIPTSSVTGE----------GISELLDLISTLLK 193 (195)
T ss_dssp HHHSS------CCSCEEECCTTTCT----------THHHHHHHHHHHHC
T ss_pred HHhhc------CCCceEEEecCCCC----------CHHHHHHHHHHHhh
Confidence 33221 13579999999998 99999999998775
No 228
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.62 E-value=7.2e-16 Score=163.55 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=113.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+...- .. .. .|+......+.+++..+++|||||+.+|.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~-------------~~----~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEV--VT-------------TI----PTIGFNVETVTYKNLKFQVWDLGGLTSIR 65 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSC--CC-------------CC----CCSSEEEEEEEETTEEEEEEEECCCGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC--CC-------------cC----CcCccceEEEEECCEEEEEEECCCChhhh
Confidence 3457899999999999999999975421 10 01 12222335577789999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++++|+|++++... .....+..... .++|+++|+||+|+.+... .+++.+.+.... ...
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~--~~~ 140 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT---SSEMANSLGLPA--LKD 140 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGG--CTT
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC---HHHHHHHhCchh--ccC
Confidence 8888889999999999999876432 23333433333 4789999999999976532 122222221111 112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++.+.+.++
T Consensus 141 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 141 RKWQIFKTSATKGT----------GLDEAMEWLVETLK 168 (171)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CceEEEECcCCCCc----------CHHHHHHHHHHHHh
Confidence 35689999999998 99999999988765
No 229
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.62 E-value=9.1e-16 Score=175.46 Aligned_cols=156 Identities=26% Similarity=0.390 Sum_probs=117.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|++... .....+|+|+......+.+++..+.||||||+.+|.
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~----------------~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQ----------------YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCE----------------EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCC----------------cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccC
Confidence 3457899999999999999999975411 012236899999999999999999999999998876
Q ss_pred H-----HH-HHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCCh-hhhHHHHHHHHhhhcc
Q psy1758 1000 G-----EV-ERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCA 1070 (1527)
Q Consensus 1000 ~-----ev-~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~-~~v~~~~~~~~~~l~~ 1070 (1527)
. .+ ...+ ..+|++++|+|++.. .....++..+.+.++|+++|+||+|+...+. ....+++..
T Consensus 67 ~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~------- 137 (258)
T 3a1s_A 67 YSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQK------- 137 (258)
T ss_dssp SSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHH-------
T ss_pred CCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHH-------
Confidence 4 22 2333 479999999999873 3445566777788999999999999743211 111222222
Q ss_pred cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1071 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1071 ~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.+.+|++++||++|. |+++|++.+.+.++.
T Consensus 138 ---~lg~~vi~~SA~~g~----------gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 138 ---HLGIPVVFTSSVTGE----------GLEELKEKIVEYAQK 167 (258)
T ss_dssp ---HHCSCEEECCTTTCT----------THHHHHHHHHHHHHS
T ss_pred ---HcCCCEEEEEeeCCc----------CHHHHHHHHHHHhhc
Confidence 124689999999998 999999999887653
No 230
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.62 E-value=1.2e-15 Score=175.85 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=118.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG- 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~- 1000 (1527)
.++|+++|++|+|||||+++|++... .....+|+|++.....+.+++..++||||||+.+|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 66 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ----------------HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAH 66 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE----------------EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccC
Confidence 57999999999999999999975411 1123468899999999999999999999999998876
Q ss_pred -----HHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcC-CccEEEEeccCCCCCC-hhhhHHHHHHHHhhhccc
Q psy1758 1001 -----EVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLG-FKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 1001 -----ev~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~g-lp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~ 1071 (1527)
....++ ..+|++++|+|++.+ .+....+..+.+.+ +|+++|+||+|+...+ .....+++.+.
T Consensus 67 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~------- 137 (271)
T 3k53_A 67 SIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKE------- 137 (271)
T ss_dssp CHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHH-------
T ss_pred CHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHH-------
Confidence 233333 569999999999874 56667777788888 9999999999964211 01112333222
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+.+|++++||++|. |++++++.+.+.+..
T Consensus 138 ---lg~~~~~~Sa~~g~----------gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 138 ---LGVPVIPTNAKKGE----------GVEELKRMIALMAEG 166 (271)
T ss_dssp ---HSSCEEECBGGGTB----------THHHHHHHHHHHHHT
T ss_pred ---cCCcEEEEEeCCCC----------CHHHHHHHHHHHHhc
Confidence 24689999999998 999999999887643
No 231
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.62 E-value=2.1e-15 Score=158.94 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=109.8
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++|+|||||+++|+...- ... .. |+......+.++++.++||||||+.+|...+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~--~~~-------------~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 62 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI--VTT-------------IP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS--SCC-------------CC----CSSCCEEEEECSSCEEEEEECCCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc--Ccc-------------cC----cCceeEEEEEECCEEEEEEEcCCChhhHHHHH
Confidence 799999999999999999986421 100 11 22223345677889999999999999999888
Q ss_pred HHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
.+++.+|++++|+|++++... .....+..... .+.|+++|+||+|+.+... .+++.+.+.... .....+|
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~--~~~~~~~ 137 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS--LRHRNWY 137 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGG--CSSCCEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC---HHHHHHHhCccc--ccCccEE
Confidence 899999999999999875322 22333333333 2789999999999976432 222332221111 1123568
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++++||++|. |++++++.+.+.++
T Consensus 138 ~~~~Sa~~~~----------gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 138 IQATCATSGD----------GLYEGLDWLSNQLR 161 (164)
T ss_dssp EEECBTTTTB----------THHHHHHHHHHHC-
T ss_pred EEEcccCCCc----------CHHHHHHHHHHHHh
Confidence 9999999998 99999999988775
No 232
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.62 E-value=1.2e-15 Score=165.37 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=113.2
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+....... .....|.+ ...+.++++.++||||||+.+|.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~----~~~~~~~~~~~~l~Dt~G~~~~~ 81 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED--------------MIPTVGFN----MRKITKGNVTIKLWDIGGQPRFR 81 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------CCCCCSEE----EEEEEETTEEEEEEEECCSHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc--------------cCCCCcee----EEEEEeCCEEEEEEECCCCHhHH
Confidence 4567999999999999999999986421100 01112222 33467889999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++|+|+|+++... ......+..+.. .++|+++|+||+|+...... +++.+.+.... ...
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~--~~~ 156 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSA--IQD 156 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGG--CCS
T ss_pred HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChhh--hcc
Confidence 999999999999999999987432 222333444332 57899999999999765311 22222221111 112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..++++++||++|. |+++++++|.+.+..
T Consensus 157 ~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 157 REICCYSISCKEKD----------NIDITLQWLIQHSKS 185 (188)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHTCC-
T ss_pred CCeeEEEEECCCCC----------CHHHHHHHHHHHHHh
Confidence 35689999999998 999999999987753
No 233
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.62 E-value=1.4e-15 Score=161.49 Aligned_cols=151 Identities=25% Similarity=0.330 Sum_probs=106.2
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH--
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~-- 1000 (1527)
.+|+++|++|+|||||+++|++.... .+...|+|++.....+.+++..+++|||||+.+|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 67 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY----------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS 67 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS----------------CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee----------------ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc
Confidence 68999999999999999999854210 112346677777777888899999999999998852
Q ss_pred ----HHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCCh-hhhHHHHHHHHhhhccccc
Q psy1758 1001 ----EVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1001 ----ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~-~~v~~~~~~~~~~l~~~~~ 1073 (1527)
....+++ .+|++++|+|++. ..+....+..+.+.++|+++|.||+|+...+. ....+++.+ .
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~------ 136 (165)
T 2wji_A 68 IDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---I------ 136 (165)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHH---H------
T ss_pred hhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHH---H------
Confidence 2233443 7999999999986 23334455556667999999999999753211 111122221 1
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++++||++|. |++++++.+.+.+
T Consensus 137 -~~~~~~~~SA~~~~----------~v~~l~~~l~~~~ 163 (165)
T 2wji_A 137 -LGVKVVPLSAAKKM----------GIEELKKAISIAV 163 (165)
T ss_dssp -HTSCEEECBGGGTB----------SHHHHHHHHHHHT
T ss_pred -hCCCEEEEEcCCCC----------CHHHHHHHHHHHh
Confidence 23579999999998 9999999998765
No 234
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.62 E-value=4e-16 Score=192.01 Aligned_cols=156 Identities=23% Similarity=0.238 Sum_probs=109.3
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+|+|++|+|||||+|+|++.... ......|+|.+.....+.++++.++||||||+.++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a---------------~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRA---------------IVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBS---------------CCSCCTTCCHHHHHHEEEETTEEEEECC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc---------------cccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh
Confidence 4467999999999999999999875221 1223356777777777888999999999999988776
Q ss_pred HHHH--------HHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1001 EVER--------ILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 ev~~--------~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.++. .+..+|++|+|+|++++...+...++..+. ..|.++|+||+|+...+... . +..+
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~---~----~~~~---- 354 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT---S----LEYP---- 354 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST---T----CCCC----
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH---H----HHHh----
Confidence 6554 357899999999999988888777776654 37999999999997643211 0 0011
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
....|++++||++|. |+++|++.|.+.+....
T Consensus 355 -~~~~~~i~iSAktg~----------Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 355 -ENITQIVHTAAAQKQ----------GIDSLETAILEIVQTGK 386 (462)
T ss_dssp -TTCCCEEEEBTTTTB----------SHHHHHHHHHHHHTTSS
T ss_pred -ccCCcEEEEECCCCC----------CHHHHHHHHHHHHhccC
Confidence 124589999999998 99999999999886543
No 235
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.61 E-value=3.2e-15 Score=161.32 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=112.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+... +. ......|.+ ...+.+++..+++|||||+..|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~--~~-------------~~~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~~~ 74 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED--IS-------------HITPTQGFN----IKSVQSQGFKLNVWDIGGQRKIR 74 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC--CE-------------EEEEETTEE----EEEEEETTEEEEEEECSSCGGGH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC--CC-------------cccCcCCeE----EEEEEECCEEEEEEECCCCHHHH
Confidence 345799999999999999999997541 10 112223433 23566778999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++++|+|+++.... .....+..+.. .++|+++|+||+|+.++.. .+++.+.+.... ...
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~--~~~ 149 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---ASEIAEGLNLHT--IRD 149 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGG--CCS
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC---HHHHHHHhCchh--ccC
Confidence 9999999999999999999875322 22333333322 4789999999999976542 223333221111 112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..++++++||++|. |++++++++.+.++.
T Consensus 150 ~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 150 RVWQIQSCSALTGE----------GVQDGMNWVCKNVNA 178 (181)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHTC--
T ss_pred CceEEEEccCCCCC----------CHHHHHHHHHHHHHh
Confidence 34689999999998 999999999987753
No 236
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.61 E-value=1.8e-15 Score=161.63 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=111.9
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
.+...+|+++|++|+|||||+++|+....... .....|.+.......+......+.||||||+.+|
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 77 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--------------CTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEEEEEECCeEEEEEEEECCCChHh
Confidence 34568999999999999999999986532111 1112334443333333334568999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
...+..+++.+|++++|+|++++...+.. .++..+.. .++|+++|+||+|+...+. ...+++.+....
T Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~------- 149 (179)
T 1z0f_A 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD-VTYEEAKQFAEE------- 149 (179)
T ss_dssp CHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHH-------
T ss_pred hhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc-cCHHHHHHHHHH-------
Confidence 99999999999999999999875332222 22333333 4789999999999854321 112233332222
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..++++++||++|. |++++++++.+.+
T Consensus 150 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 176 (179)
T 1z0f_A 150 NGLLFLEASAKTGE----------NVEDAFLEAAKKI 176 (179)
T ss_dssp TTCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 24579999999998 9999999998765
No 237
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.61 E-value=9.4e-16 Score=165.20 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=111.1
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
..+..+|+++|++|+|||||+++|+...- .. .....|. ....+.+++..+.||||||+.+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~-------------~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~ 78 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV--VH-------------TSPTIGS----NVEEIVINNTRFLMWDIGGQESL 78 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC--EE-------------EECCSSS----SCEEEEETTEEEEEEEESSSGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC--Cc-------------cCCcCce----eeEEEEECCEEEEEEECCCCHhH
Confidence 34567999999999999999999986521 10 1111222 23456678899999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
...+..+++.+|++++|+|+++.... .....+..... .++|+++|+||+|+.+... .+++.+.+... ...
T Consensus 79 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~--~~~ 153 (181)
T 2h17_A 79 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLT--SIK 153 (181)
T ss_dssp TCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGG--GCC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC---HHHHHHHhCcc--ccc
Confidence 88888889999999999999986433 33344444443 5789999999999976432 22233222111 112
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
...++++++||++|. |++++++.|.+.
T Consensus 154 ~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~ 180 (181)
T 2h17_A 154 DHQWHIQACCALTGE----------GLCQGLEWMMSR 180 (181)
T ss_dssp SSCEEEEECBTTTTB----------THHHHHHHHHTC
T ss_pred CCceEEEEccCCCCc----------CHHHHHHHHHhh
Confidence 235689999999998 999999998764
No 238
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=164.63 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=113.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+..... .+..++++.+.....+.+++ +.+.||||||+.+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYT----------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC----------------SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC----------------CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 46789999999999999999999864211 11223444455555566666 6799999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++|+|+|+++....+ ....+..+... ++|+++|+||+|+...+... .++......
T Consensus 78 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~------- 149 (196)
T 3tkl_A 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD-YTTAKEFAD------- 149 (196)
T ss_dssp GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC-HHHHHHHHH-------
T ss_pred hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccC-HHHHHHHHH-------
Confidence 9999999999999999999998743222 23333334333 78999999999997553211 112222111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |+++++++|.+.+.
T Consensus 150 ~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 150 SLGIPFLETSAKNAT----------NVEQSFMTMAAEIK 178 (196)
T ss_dssp HTTCCEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred HcCCcEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124589999999998 99999999887764
No 239
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.61 E-value=2.3e-15 Score=178.02 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=113.2
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeE--EEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS--ITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~--i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
..+.++|+++|++|+|||||++++....+.....+ ++.+.....+..++.. +.||||||++.|..++..+++.+|++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCC-CSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCC-cccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 45678999999999999999999998877554444 4444445556666664 55999999999999999999999999
Q ss_pred EEEEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEEcccCCcchhHH-HHHHHhhhc-------ccccccCCCCcEEEe
Q psy1758 144 VLVVAADDGVMPQTRE--AIAHAKIS--GVPLIVAINKIDKLDINLDR-IKQDLISEQ-------VIPEEYGGASPFISI 211 (1527)
Q Consensus 144 IlVvda~~g~~~qt~e--~i~~~~~~--~vpiIvviNKiDl~~~~~~~-~~~~l~~~~-------~~~~~~~~~~~v~~i 211 (1527)
++|+|+++....+... ++..+... ++|+++|+||+|+.+..... ......... ..... .+..+++++
T Consensus 231 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~ 309 (332)
T 2wkq_A 231 LICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-IGAVKYLEC 309 (332)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-TTCSEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHH-cCCcEEEEe
Confidence 9999999844333221 22333332 89999999999986532110 000000000 00111 122489999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.|++++|+.|...
T Consensus 310 Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHH
Confidence 999999999999999754
No 240
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=2.5e-15 Score=158.88 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=108.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|++|+|||||+++|+...... ......|.+.......+......+.||||||+.+|...+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 69 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAE--------------NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhh
Confidence 589999999999999999998652110 011223444433333333344689999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCCh-hhhH-HHHHHHHhhhcccccccC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARP-EWVV-DATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~-~~v~-~~~~~~~~~l~~~~~~~~ 1076 (1527)
...++.+|++++|+|++++...+. ...+..+.. .++|+++|+||+|+..... .++. ++....... ..
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~ 142 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE-------KG 142 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-------HT
T ss_pred hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHH-------cC
Confidence 999999999999999987532222 222333332 3788999999999865321 1111 122221111 23
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+|++++||++|. |++++++.|.+.++
T Consensus 143 ~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 143 LLFFETSAKTGE----------NVNDVFLGIGEKIP 168 (170)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHTTSC
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 579999999998 99999999988775
No 241
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.60 E-value=4.2e-15 Score=161.99 Aligned_cols=159 Identities=17% Similarity=0.141 Sum_probs=108.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+... +.. ... |+......+.+++..++||||||+.+|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~~~-------------~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--IVT-------------TIP----TIGFNVETVEYKNICFTVWDVGGQDKIR 87 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--CEE-------------EEE----ETTEEEEEEEETTEEEEEEECC-----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--ccc-------------cCC----cCceeEEEEEECCEEEEEEECCCCHhHH
Confidence 345789999999999999999997431 110 011 2223345677789999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++++|+|++++..- .....+..... .++|+++|+||+|+.+... .+++.+.+.... ...
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~--~~~ 162 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP---VSELTDKLGLQH--LRS 162 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGG--CSS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC---HHHHHHHhCccc--ccC
Confidence 8888999999999999999875322 22333333333 3789999999999976532 223333222111 112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |+++++++|.+.+.
T Consensus 163 ~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 163 RTWYVQATCATQGT----------GLYDGLDWLSHELS 190 (192)
T ss_dssp CCEEEEECBTTTTB----------THHHHHHHHHHHTT
T ss_pred CceEEEECcCCCcC----------CHHHHHHHHHHHHh
Confidence 35689999999998 99999999988764
No 242
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=164.47 Aligned_cols=164 Identities=19% Similarity=0.127 Sum_probs=105.8
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD 997 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d 997 (1527)
..+...+|+++|++|+|||||+++|+...... ......|.+.......+......++||||||+.+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 89 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE--------------NISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEETTEEEEEEEEECTTCTT
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCc--------------cCCCCccceeEEEEEEECCEEEEEEEEECCCCcc
Confidence 34566899999999999999999998652110 0112234444333333433446799999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCC----hhhh-HHHHHHHHhhh
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNAR----PEWV-VDATFDLFDKL 1068 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~----~~~v-~~~~~~~~~~l 1068 (1527)
|...+..+++.+|++|+|+|++++...+. ..++..+.. .++|+++|+||+|+.+.. ...+ .++......
T Consensus 90 ~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~-- 167 (199)
T 2p5s_A 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM-- 167 (199)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH--
T ss_pred hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHH--
Confidence 99999999999999999999987543333 223333333 378999999999985211 0011 111111111
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |++++++.|.+.+.
T Consensus 168 -----~~~~~~~~~SA~~g~----------gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 -----TYGALFCETSAKDGS----------NIVEAVLHLAREVK 196 (199)
T ss_dssp -----HHTCEEEECCTTTCT----------THHHHHHHHHHHHT
T ss_pred -----HcCCeEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 124579999999998 99999999988764
No 243
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.60 E-value=6.3e-16 Score=165.48 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=112.9
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.+...+|+++|++|+|||||+++|+..... .+..++++.+.....+.+++ +.++||||||+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 356789999999999999999999754211 12234455555556667776 789999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
+|......+++.+|++++|+|++++...+.. ..+..+... ++|+++|+||+|+...+... .++.......
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~------ 142 (181)
T 3tw8_B 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVE-TEDAYKFAGQ------ 142 (181)
T ss_dssp GCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSC-HHHHHHHHHH------
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccC-HHHHHHHHHH------
Confidence 9998888889999999999999885332222 222333332 58999999999986543111 1122221111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++.+.+.+.
T Consensus 143 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 143 -MGIQLFETSAKENV----------NVEEMFNCITELVL 170 (181)
T ss_dssp -HTCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -cCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999988764
No 244
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.60 E-value=3e-15 Score=160.01 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=109.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC---eEEEEEeCCCCCC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG---TRINIIDTPGHAD 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---~~iniiDTPGh~d 997 (1527)
+..+|+++|++|+|||||+++|+..... .......| ++.....+.+.+ ..++||||||+.+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~--------------~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG--------------KQYKQTIG--LDFFLRRITLPGNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT--------------HHHHHTTT--SSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC--------------CCCCCcee--EEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence 4468999999999999999999865211 00111122 223334555655 7899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH-----cCCc-cEEEEeccCCCCCChhhhHHHHHHHHhhhcc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK-----LGFK-PIVVVNKIDRSNARPEWVVDATFDLFDKLCA 1070 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~-----~glp-~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~ 1070 (1527)
|...+..+++.+|++++|+|++++...+ ...++..+.. .+.| +++|+||+|+.+.+.. ..++.......
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~-~~~~~~~~~~~--- 144 (178)
T 2hxs_A 69 GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI-KPEKHLRFCQE--- 144 (178)
T ss_dssp TCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS-CHHHHHHHHHH---
T ss_pred ccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccccc-CHHHHHHHHHH---
Confidence 9999999999999999999998743222 2233333333 2667 5788999998653210 11222222211
Q ss_pred cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1071 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1071 ~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..+|++++||++|. |++++++.|.+.++..
T Consensus 145 ----~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 145 ----NGFSSHFVSAKTGD----------SVFLCFQKVAAEILGI 174 (178)
T ss_dssp ----HTCEEEEECTTTCT----------THHHHHHHHHHHHTTC
T ss_pred ----cCCcEEEEeCCCCC----------CHHHHHHHHHHHHHhh
Confidence 23579999999998 9999999999887643
No 245
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.60 E-value=1.1e-15 Score=165.15 Aligned_cols=160 Identities=16% Similarity=0.222 Sum_probs=113.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+... .... ....|. ....+.++++.++||||||+.+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~-------------~~t~~~----~~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTI-------------SPTLGF----NIKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSC-------------CCCSSE----EEEEEEETTEEEEEEEECCSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCcc-------------cccCcc----ceEEEEECCEEEEEEECCCCHhHH
Confidence 355799999999999999999998653 1110 111232 234566788999999999999988
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++++|+|++++.. ......+..... .++|+++|+||+|+.+... .+++.+.+... ....
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~--~~~~ 151 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS---CNAIQEALELD--SIRS 151 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGG--GCCS
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC---HHHHHHHhChh--hccC
Confidence 888888899999999999987532 233334444433 4789999999999976532 22333322111 1112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+|++++||++|. |++++++.+.+.++.
T Consensus 152 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 152 HHWRIQGCSAVTGE----------DLLPGIDWLLDDISS 180 (186)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHHHHT
T ss_pred CceEEEEeeCCCCC----------CHHHHHHHHHHHHHh
Confidence 35689999999998 999999999887753
No 246
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.60 E-value=4.2e-15 Score=162.99 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=111.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+...+|+++|++|+|||||+++|+....... .....|++.......+......++||||||+.+|.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR 71 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSC--------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC--------------cCCccceeEEEEEEEECCeEEEEEEEECCCchhhc
Confidence 4567999999999999999999986521100 11223455444444444445789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+..+++.+|++|+|+|++++...+ ...++..+.. .+.|+++|+||+|+...+.. ..++....... .
T Consensus 72 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~-------~ 143 (203)
T 1zbd_A 72 TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVV-SSERGRQLADH-------L 143 (203)
T ss_dssp HHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCS-CHHHHHHHHHH-------H
T ss_pred chHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccccc-CHHHHHHHHHH-------C
Confidence 99999999999999999998743222 2233334443 37899999999999754311 11222222211 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++++||++|. |+++++++|.+.+
T Consensus 144 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 169 (203)
T 1zbd_A 144 GFEFFEASAKDNI----------NVKQTFERLVDVI 169 (203)
T ss_dssp TCEEEECBTTTTB----------SSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 3579999999998 9999998887765
No 247
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=3e-15 Score=160.28 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=102.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+....... +..+.++.......+.+++ +.++||||||+.+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG---------------TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC---------------CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC---------------CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4567999999999999999999986532110 1112222233333344444 5899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++++|+|++++...+. ...+..+.. .++|+++|+||+|+...+.. ..++.......
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~------ 145 (180)
T 2g6b_A 73 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVV-KREDGEKLAKE------ 145 (180)
T ss_dssp ------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCS-CHHHHHHHHHH------
T ss_pred HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccccc-CHHHHHHHHHH------
Confidence 99888888999999999999987432222 233333433 57899999999999754311 11222222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++++.+.+.
T Consensus 146 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 146 -YGLPFMETSAKTGL----------NVDLAFTAIAKELK 173 (180)
T ss_dssp -HTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred -cCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999988764
No 248
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=163.83 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=112.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+........ ...|+......+.+++..+.||||||+.+|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR 81 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEECSSCEEEEEEECCSTTTG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEECCEEEEEEECCCCHHHH
Confidence 44579999999999999999999765211110 1123333345677788999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
..+..+++.+|++|+|+|++++.. ......+..+.. .++|+++|+||+|+.+... .+++.+.+. +. ..
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~-~~-~~ 156 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT---SVKVSQLLC-LE-NI 156 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC---HHHHHHHHT-GG-GC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC---HHHHHHHhC-hh-hc
Confidence 988889999999999999987421 222233444433 4789999999999976432 223333221 11 11
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
....++++++||++|. |++++++.|.+.+.
T Consensus 157 ~~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 157 KDKPWHICASDAIKGE----------GLQEGVDWLQDQIQ 186 (190)
T ss_dssp CSSCEEEEECBTTTTB----------THHHHHHHHHHHC-
T ss_pred cCCceEEEEccCCCCc----------CHHHHHHHHHHHHH
Confidence 1235689999999998 99999999988763
No 249
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.59 E-value=4e-15 Score=157.51 Aligned_cols=161 Identities=18% Similarity=0.200 Sum_probs=113.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+..... .......|.+.......+......+.||||||+.+|.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 69 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFD--------------PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR 69 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCC--------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC--------------CCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh
Confidence 34579999999999999999999865211 0112334555554444444445789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......++.+|++++|+|++++...+. ..++..+... ++|+++|+||+|+...+. ...++...... ..
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~-v~~~~~~~~~~-------~~ 141 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE-VMERDAKDYAD-------SI 141 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCC-SCHHHHHHHHH-------HT
T ss_pred cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccc-cCHHHHHHHHH-------Hc
Confidence 999999999999999999987543333 2333444443 577888899999864321 01122222111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+|++++||++|. |++++++.|.+.++
T Consensus 142 ~~~~~~~Sa~~~~----------~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 142 HAIFVETSAKNAI----------NINELFIEISRRIP 168 (170)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHHCC
T ss_pred CCEEEEEeCCCCc----------CHHHHHHHHHHHHh
Confidence 4679999999998 99999999998875
No 250
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.59 E-value=4.3e-15 Score=158.63 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=109.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+...... +..+.++.......+.+++ ..+.||||||+.+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEETTEEEEEEEEECCCCGG
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 456799999999999999999998652110 1112222333334455555 5899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH-------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 1069 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~-------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~ 1069 (1527)
|...+...++.+|++++|+|++++...+.. ..+..+.. .++|+++|+||+|+.... ...+++......
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~--~~~~~~~~~~~~-- 144 (177)
T 1wms_A 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ--VSTEEAQAWCRD-- 144 (177)
T ss_dssp GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS--SCHHHHHHHHHH--
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc--cCHHHHHHHHHh--
Confidence 999888889999999999999875332222 22222222 578999999999986322 112233332211
Q ss_pred ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1070 ~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |++++++.+.+.+.
T Consensus 145 ----~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 145 ----NGDYPYFETSAKDAT----------NVAAAFEEAVRRVL 173 (177)
T ss_dssp ----TTCCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ----cCCceEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124579999999998 99999999988764
No 251
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.59 E-value=2e-15 Score=165.46 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=106.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++|.... +.. .. .|+......+.+++..+++|||||+.+|...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~--~~~-------------~~----~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 85 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDR--LGQ-------------HV----PTLHPTSEELTIAGMTFTTFDLGGHIQARRV 85 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC----CCG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC--CCc-------------cC----CCCCceeEEEEECCEEEEEEECCCcHhhHHH
Confidence 3589999999999999999997531 110 01 1222334567788899999999999999888
Q ss_pred HHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc------
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA------ 1070 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~------ 1070 (1527)
+..+++.+|++++|+|++++.. ......+..+.+ .++|+++|+||+|+.++.. .+++.+.+.....
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~ 162 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS---EERLREMFGLYGQTTGKGS 162 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC---HHHHHHHHTCTTTCCCSSC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCC---HHHHHHHhCcccccccccc
Confidence 7888999999999999987532 223333444432 4789999999999976322 2333433322110
Q ss_pred ----cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1071 ----TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1071 ----~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
......++++++||++|. |++++++++.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~l 197 (198)
T 1f6b_A 163 VSLKELNARPLEVFMCSVLKRQ----------GYGEGFRWMAQYI 197 (198)
T ss_dssp CCTTTCCSCCEEEEECBTTTTB----------SHHHHHHHHHTTC
T ss_pred cccccccCceEEEEEEECCCCC----------CHHHHHHHHHHhc
Confidence 000134689999999998 9999999998754
No 252
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.59 E-value=3.8e-15 Score=162.46 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=79.4
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH-cCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK-LGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~-~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
..++||||||+.+|...+..+++.+|++|+|+|++++...+. ..++..+.. .+.|+++|+||+|.... +...+++.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~--~~~~~~~~ 170 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKF--QVDILEVQ 170 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-C--CSCHHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccc--cCCHHHHH
Confidence 789999999999999999999999999999999988543333 223333333 57899999999993221 11233444
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..... ..+|++++||++|. |+++++++|.+.+
T Consensus 171 ~~~~~-------~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 202 (208)
T 3clv_A 171 KYAQD-------NNLLFIQTSAKTGT----------NIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHH-------TTCEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHH-------cCCcEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 33322 24589999999998 9999999988765
No 253
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.59 E-value=3.9e-15 Score=162.09 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=108.6
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.+...+|+++|++|+|||||+++|+...... ......|.+ .....+.+++ +.+.||||||+.
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--------------~~~~t~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCE--------------ACKSTVGVD--FKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC----------------------CCTTEE--EEEEEEEETTEEEEEEEEEECCSG
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCc--------------CCCCcccee--EEEEEEEECCeEEEEEEEeCCCcH
Confidence 4556799999999999999999997542110 011122333 3334455554 689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+|...+..+++.+|++|+|+|++++...+.. .++..+.. .++|+++|+||+|+...+.. ..++.......+
T Consensus 87 ~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~---- 161 (192)
T 2il1_A 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI-TRQQGEKFAQQI---- 161 (192)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHHTS----
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc-CHHHHHHHHHhc----
Confidence 9999999999999999999999875433332 22233333 37899999999998643210 112222221111
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..++++.+||++|. |++++++.|.+.+
T Consensus 162 --~~~~~~~~SA~~g~----------gi~~l~~~l~~~i 188 (192)
T 2il1_A 162 --TGMRFCEASAKDNF----------NVDEIFLKLVDDI 188 (192)
T ss_dssp --TTCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred --CCCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 14579999999998 9999999998765
No 254
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.59 E-value=1.9e-15 Score=162.61 Aligned_cols=159 Identities=19% Similarity=0.164 Sum_probs=87.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+..... .+..++++.+.....+.+++ +.++||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 45679999999999999999999754110 11123344444444555665 7899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|.......++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.+.+.. ..+++......
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~------ 142 (183)
T 2fu5_C 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQV-SKERGEKLALD------ 142 (183)
T ss_dssp ----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCS-CHHHHHHHHHH------
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcC-CHHHHHHHHHH------
Confidence 98888888899999999999987432 222333344444 37899999999999754311 12222222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++.+.+.+.
T Consensus 143 -~~~~~~~~Sa~~~~----------~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 143 -YGIKFMETSAKANI----------NVENAFFTLARDIK 170 (183)
T ss_dssp -HTCEEEECCC---C----------CHHHHHHHHHHHHH
T ss_pred -cCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 24579999999998 99999999987764
No 255
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=3.2e-15 Score=161.59 Aligned_cols=156 Identities=24% Similarity=0.301 Sum_probs=114.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|++|+|||||+++|+.... ..+...|+|++.....+.+++..+++|||||+.+|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV----------------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 69 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE----------------EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----------------cccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccc
Confidence 457899999999999999999985410 1123357788777888889999999999999998852
Q ss_pred ------HHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhccc
Q psy1758 1001 ------EVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 1001 ------ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~ 1071 (1527)
....++. .+|++++|+|++. ..+...++..+...+.|+++|.||+|+...+ .....+++.+ .
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~---- 140 (188)
T 2wjg_A 70 NSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---I---- 140 (188)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH---H----
T ss_pred ccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH---H----
Confidence 2333443 4999999999975 3444555666677899999999999985321 1111222222 1
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..+|++++||++|. |++++++.+.+.++..
T Consensus 141 ---~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 141 ---LGVKVVPLSAAKKM----------GIEELKKAISIAVKDK 170 (188)
T ss_dssp ---HTSCEEECBGGGTB----------SHHHHHHHHHHHHTTC
T ss_pred ---hCCCeEEEEecCCC----------CHHHHHHHHHHHHHhc
Confidence 23579999999998 9999999999888643
No 256
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.58 E-value=3.6e-15 Score=159.21 Aligned_cols=159 Identities=21% Similarity=0.192 Sum_probs=110.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
+..+|+++|++|+|||||+++|+...... +..+.++++.....+.+++ +.+.||||||+.+|
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 76 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS----------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH
Confidence 34789999999999999999998542111 1112333334444455555 58999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
...+..+++.+|++++|+|+++.... .....+..+.. .++|+++|+||+|+.+.+.. ..++.......
T Consensus 77 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~------- 148 (179)
T 2y8e_A 77 RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-STEEGERKAKE------- 148 (179)
T ss_dssp GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCS-CHHHHHHHHHH-------
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcC-CHHHHHHHHHH-------
Confidence 99999999999999999999874221 22233333332 47899999999998643211 11222222211
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+|++.+||++|. |++++++.|.+.++.
T Consensus 149 ~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 149 LNVMFIETSAKAGY----------NVKQLFRRVAAALPG 177 (179)
T ss_dssp HTCEEEEEBTTTTB----------SHHHHHHHHHHTCC-
T ss_pred cCCeEEEEeCCCCC----------CHHHHHHHHHHHHhh
Confidence 23579999999998 999999999988753
No 257
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=2.6e-15 Score=165.63 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=109.9
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.....+|+++|++|+|||||+++|+..... .+..+.++.+.....+.+++ +.+.||||||+.
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFN----------------PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCC----------------CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC----------------cccCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 345679999999999999999999854211 01112333334445566666 689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+|...+..+++.+|++|+|+|++++...+ ...++..+... ++|+++|+||+|+..... ..++.......
T Consensus 81 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~----- 153 (213)
T 3cph_A 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV--TADQGEALAKE----- 153 (213)
T ss_dssp GGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCS--CHHHHHHHHHH-----
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc--CHHHHHHHHHH-----
Confidence 99988889999999999999998743222 23333444432 789999999999843221 12222222211
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |+++++++|.+.++
T Consensus 154 --~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 154 --LGIPFIESSAKNDD----------NVNEIFFTLAKLIQ 181 (213)
T ss_dssp --HTCCEEECBTTTTB----------SSHHHHHHHHHHHH
T ss_pred --cCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23589999999998 99999999987764
No 258
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.58 E-value=2.6e-15 Score=162.83 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=113.2
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
.+...+|+++|++|+|||||+++|+....... .....|.+.......+....+.++||||||+.+|
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 84 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY 84 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSS
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCC--------------cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHH
Confidence 34568999999999999999999986521100 1122345554444444444578999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
...+..+++.+|++|+|+|++++... ....++..+... ++|+++|+||+|+...+.. ..+++......
T Consensus 85 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~------- 156 (189)
T 2gf9_A 85 RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVV-PAEDGRRLADD------- 156 (189)
T ss_dssp CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHHH-------
T ss_pred hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCC-CHHHHHHHHHH-------
Confidence 98888899999999999999874322 223344444443 7899999999998643211 11222222222
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..++++++||++|. |++++++.|.+.++
T Consensus 157 ~~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 157 LGFEFFEASAKENI----------NVKQVFERLVDVIC 184 (189)
T ss_dssp HTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999987764
No 259
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=6.2e-15 Score=156.13 Aligned_cols=160 Identities=17% Similarity=0.108 Sum_probs=107.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++|+......... ...+.+.. ....+....+.+.||||||+.+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------------~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~ 67 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYI--------------PTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCC--------------CCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------CCccccEE-EEEEECCEEEEEEEEECCCchhhHHH
Confidence 3589999999999999999998642111100 01111111 11222223467999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
...+++.+|++++|+|+++... .+....+..+.+ .++|+++|+||+|+...+.. ...+...... ..
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v-~~~~~~~~~~-------~~ 139 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREV-QSSEAEALAR-------TW 139 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCS-CHHHHHHHHH-------HH
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccccc-CHHHHHHHHH-------Hh
Confidence 9999999999999999986422 223344444443 37899999999998643211 0111111111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+|++++||++|. |+++++++|.+.+..+
T Consensus 140 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 140 KCAFMETSAKLNH----------NVKELFQELLNLEKRR 168 (172)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHTCCSS
T ss_pred CCeEEEecCCCCc----------CHHHHHHHHHHHHhhh
Confidence 3579999999998 9999999999887654
No 260
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.58 E-value=2.3e-15 Score=159.29 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=107.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|++|+|||||+++|+...-.. +..+.++.+.....+.+++ +.+.||||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 66 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP----------------SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR 66 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-----------------------CCEEEEEEESSSCEEEEEEECCTTGGGTS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh
Confidence 4689999999999999999998652110 1112233333334455554 578999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+...++.+|++++|+|++++...+ ....+..+.. .++|+++|+||+|+..... ..++....... .
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~-------~ 137 (170)
T 1g16_A 67 TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV--TADQGEALAKE-------L 137 (170)
T ss_dssp CCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS--CHHHHHHHHHH-------H
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCcc--CHHHHHHHHHH-------c
Confidence 88889999999999999998743222 2333344443 3789999999999944221 12222222211 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+|++++||++|. |++++++.+.+.++
T Consensus 138 ~~~~~~~Sa~~~~----------gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 138 GIPFIESSAKNDD----------NVNEIFFTLAKLIQ 164 (170)
T ss_dssp TCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 3589999999998 99999999988764
No 261
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=158.05 Aligned_cols=159 Identities=17% Similarity=0.179 Sum_probs=100.3
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC--c
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD--F 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d--f 998 (1527)
...+|+++|++|+|||||+++|+..... ......|.+.......+....+.+++|||||+.. +
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 67 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQER---------------DLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK 67 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC--------------------CCCSSSSEEEEEEEETTEEEEEEEECCC-------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCc---------------cccCccccceeEEEEEECCEEEEEEEEecCCCCccch
Confidence 3468999999999999999999854211 1112245554443333322335789999999988 4
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHHc----CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKL----GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~~----glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
.......++.+|++++|+|+++.... ....++..+... ++|+++|+||+|+.+.+.- ..++......
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~------- 139 (175)
T 2nzj_A 68 SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREV-SVEEGRACAV------- 139 (175)
T ss_dssp CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCS-CHHHHHHHHH-------
T ss_pred hhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcccccc-CHHHHHHHHH-------
Confidence 44445567889999999999863221 223334444443 7899999999999754311 1122222111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |++++++.|.+.+.
T Consensus 140 ~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 140 VFDCKFIETSATLQH----------NVAELFEGVVRQLR 168 (175)
T ss_dssp HHTSEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HcCCeEEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 124579999999998 99999999988764
No 262
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.58 E-value=7.2e-15 Score=158.52 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=103.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
...+|+++|++|+|||||+++|+........ .+++.......+.+++ +.++||||||+.+|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY-----------------DPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC-----------------CTTCCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------CCCchheEEEEEEECCcEEEEEEEECCCcHHH
Confidence 3468999999999999999999865321111 1111111222333444 45888999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~ 1072 (1527)
......+++.+|++++|+|+++....+. ...+..+.. .++|+++|+||+|+.... ..+...++.. .
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~---~----- 137 (189)
T 4dsu_A 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR---S----- 137 (189)
T ss_dssp CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH---H-----
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH---H-----
Confidence 9999999999999999999987422222 223333333 378999999999997543 1222222221 1
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++++.+.+.
T Consensus 138 --~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 138 --YGIPFIETSAKTRQ----------GVDDAFYTLVREIR 165 (189)
T ss_dssp --HTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred --cCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999988764
No 263
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.58 E-value=3e-15 Score=162.92 Aligned_cols=158 Identities=19% Similarity=0.188 Sum_probs=111.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++|....- .. ...|+......+.++++.+++|||||+.+|...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 83 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRL--AT-----------------LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 83 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCC--CC-----------------CCCCCSCEEEEEEETTEEEEEEECCCSGGGTTS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC--Cc-----------------cccCCCCCeEEEEECCEEEEEEECCCCHHHHHH
Confidence 35899999999999999999986421 10 112233334567788999999999999998887
Q ss_pred HHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc-----
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT----- 1071 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~----- 1071 (1527)
...+++.+|++++|+|++++..- .....+..... .++|+++|+||+|+..... .+++.+.+......
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~ 160 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS---EAELRSALGLLNTTGSQRI 160 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTCSSCCC---C
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCC---HHHHHHHhCCccccccccc
Confidence 77788999999999999975422 23333333332 5789999999999976322 23344333221100
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.....++++++||++|. |++++++.+.+.+
T Consensus 161 ~~~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~l 190 (190)
T 1m2o_B 161 EGQRPVEVFMCSVVMRN----------GYLEAFQWLSQYI 190 (190)
T ss_dssp CSSCCEEEEECBTTTTB----------SHHHHHHHHHTTC
T ss_pred cccceEEEEEeECCcCC----------CHHHHHHHHHhhC
Confidence 11234689999999998 9999999997653
No 264
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.58 E-value=2.6e-15 Score=161.80 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=110.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+...... +....++.+.....+.+++ ..+.||||||+.+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 71 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD----------------DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 456799999999999999999998652211 1112233333344455555 6899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHH---HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~---~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++|+|+|++++...+.. ..+..+. ..++|+++|+||+|+...+.. ..++......
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~------- 143 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREV-TFLEASRFAQ------- 143 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHH-------
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc-CHHHHHHHHH-------
Confidence 999998999999999999999874332222 2222222 247899999999998543211 1122222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++.+||++|. |++++++.+.+.+.
T Consensus 144 ~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 144 ENELMFLETSALTGE----------NVEEAFVQCARKIL 172 (186)
T ss_dssp HTTCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HcCCEEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999887664
No 265
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.58 E-value=3.7e-15 Score=157.35 Aligned_cols=156 Identities=17% Similarity=0.108 Sum_probs=90.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++|+..... ......|.|.. ....+......+.+|||||+.+|...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG---------------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC--------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc---------------CCCCccccceE-EEEEECCEEEEEEEEECCCCccchhh
Confidence 358999999999999999999743110 11122344442 22233334567899999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....++.+|++++|+|+++... ......+..+.. .++|+++|+||+|+.+.+.. ..++...... ...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~ 137 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV-SVDEGRACAV-------VFD 137 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCS-CHHHHHHHHH-------HTT
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccc-CHHHHHHHHH-------HhC
Confidence 8899999999999999986422 122333444443 37899999999999754311 1111111111 123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+|++++||++|. |++++++.+.+.+
T Consensus 138 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 162 (166)
T 3q72_A 138 CKFIETSAALHH----------NVQALFEGVVRQI 162 (166)
T ss_dssp CEEEECBGGGTB----------SHHHHHHHHHHHH
T ss_pred CcEEEeccCCCC----------CHHHHHHHHHHHH
Confidence 589999999998 9999999998765
No 266
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.58 E-value=6.8e-15 Score=162.82 Aligned_cols=166 Identities=20% Similarity=0.227 Sum_probs=105.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---CeEEEEEeCCCCCC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHAD 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~iniiDTPGh~d 997 (1527)
+..+|+++|++|+|||||+++|+.... ... ..|+......+.++ ++.++||||||+.+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDT-----------------QTSITDSSAIYKVNNNRGNSLTLIDLPGHES 66 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCB-----------------CCCCSCEEEEEECSSTTCCEEEEEECCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccc-----------------cCCcceeeEEEEecCCCccEEEEEECCCChh
Confidence 457899999999999999999986531 100 01111122235555 67899999999999
Q ss_pred chH-HHHHHHHhcCEEEEEEeCCCCCChhHHH---HHHHHH------HcCCccEEEEeccCCCCCC-hhhhHHHHHHHHh
Q psy1758 998 FGG-EVERILSMVDNVLLLIDAVEGPMPQTRF---VTRKAL------KLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFD 1066 (1527)
Q Consensus 998 f~~-ev~~~l~~aD~ailVVDa~~G~~~qt~~---~~~~~~------~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~ 1066 (1527)
|.. .+..+++.+|++|+|+|+++ ...+... .|.... ..++|+++|+||+|+...+ .+...+.+.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 67 LRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 988 56667899999999999986 2222222 232221 2368999999999997653 4455555554443
Q ss_pred h---------------------hccc-----cccc--CCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1067 K---------------------LCAT-----EEQL--DFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1067 ~---------------------l~~~-----~~~~--~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
. +... ...+ .++++.+||++|.+.. ...|+++++++|.+.
T Consensus 146 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~----~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 146 TLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDT----GSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----------CCBCHHHHHHHHHH
T ss_pred HHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccc----cccChHHHHHHHHHh
Confidence 1 0100 0011 5679999999992110 111999999999765
No 267
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.58 E-value=3e-15 Score=170.19 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=109.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccC--CceeEEEEEEEEEeCCeEEEEEeCCCh--------hhHHHHHHhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEA--GGITQHIGAYNVVTNHGSITFLDTPGH--------EAFTAMRARG 136 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~--~giT~~~~~~~~~~~~~~i~~iDTPG~--------e~f~~~~~~~ 136 (1527)
.+..+|+++|++|+|||||+|+|.+..+..... .++|.+.....+.+++..++||||||. +.|.....++
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 456789999999999999999999888644332 257777777888899999999999995 5555555444
Q ss_pred c----cccCEEEEEEeCCCCCcHHHHHHHHHHHHc------CCCEEEEEEcccCCcchhHHHHHHH--hhhcccccccCC
Q psy1758 137 A----KVTDIVVLVVAADDGVMPQTREAIAHAKIS------GVPLIVAINKIDKLDINLDRIKQDL--ISEQVIPEEYGG 204 (1527)
Q Consensus 137 ~----~~aD~~IlVvda~~g~~~qt~e~i~~~~~~------~vpiIvviNKiDl~~~~~~~~~~~l--~~~~~~~~~~~~ 204 (1527)
+ ..+|++|+|+|++. ........+..+... +.|+|+++||+|+.+.+..+..... .......+.++.
T Consensus 99 ~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~ 177 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG 177 (247)
T ss_dssp HHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT
T ss_pred HHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC
Confidence 4 89999999999985 656665655555543 7899999999999775544333211 000111223333
Q ss_pred CCcEEEeeccC-----CCChhHHHHHHHHHH
Q psy1758 205 ASPFISISAKT-----GVGINKLLENISLQA 230 (1527)
Q Consensus 205 ~~~v~~iSAkt-----g~gI~eL~~~l~~~~ 230 (1527)
.++.+++.. +.|+++|++.|....
T Consensus 178 --~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 178 --RVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp --CEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --eEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 344444443 689999999997554
No 268
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=2.2e-15 Score=162.01 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=108.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+... +.. .....| .....+.+++..+++|||||+.+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~-------------~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGE--VVT-------------TKPTIG----FNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSE--EEE-------------ECSSTT----CCEEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--cCc-------------cCCcCc----cceEEEEECCEEEEEEECCCCHhHH
Confidence 456799999999999999999997431 110 011122 2234566788999999999999998
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++++|+|++++... .....+..... .+.|+++|+||+|+.+... .+++.+.+.... ...
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~--~~~ 151 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS---ASEVSKELNLVE--LKD 151 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC---HHHHHHHTTTTT--CCS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC---HHHHHHHhCccc--ccC
Confidence 8888889999999999999876432 23334444432 5789999999999976432 223333222111 112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++++.+.++
T Consensus 152 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 152 RSWSIVASSAIKGE----------GITEGLDWLIDVIK 179 (183)
T ss_dssp SCEEEEEEBGGGTB----------THHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCc----------CHHHHHHHHHHHHH
Confidence 34689999999998 99999999988764
No 269
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.58 E-value=2.2e-15 Score=167.79 Aligned_cols=159 Identities=15% Similarity=0.179 Sum_probs=116.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+.... ........|+|.......+...++.++||||||+.+|.
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 78 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF--------------EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG 78 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHH--------------TCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC--------------CCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHh
Confidence 4557899999999999999999764310 01122345777777777776677899999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.....+++.+|++|+|+|++++...+....| ..+... ++|+++|+||+|+.+........++. ....
T Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----------~~~~ 148 (221)
T 3gj0_A 79 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFH----------RKKN 148 (221)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHH----------HHHT
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHH----------HHcC
Confidence 8888999999999999999975433332223 333332 88999999999997654221111111 1124
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++++.+||++|. |+++++++|.+.+.
T Consensus 149 ~~~~~~Sa~~~~----------gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 149 LQYYDISAKSNY----------NFEKPFLWLARKLI 174 (221)
T ss_dssp CEEEECBGGGTB----------TTTHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 679999999998 99999999988764
No 270
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.57 E-value=6.3e-15 Score=159.48 Aligned_cols=161 Identities=19% Similarity=0.156 Sum_probs=108.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-----------CeEE
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-----------GTRI 987 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----------~~~i 987 (1527)
.+...+|+++|++|+|||||+++|+.....-.. ....|.+... ...+.+. ...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 72 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF--------------ITTVGIDFRE-KRVVYRANGPDGAVGRGQRIHL 72 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--------------CCCCSEEEEE-EEEEECTTSCCCSSCCCEEEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCc--------------ccccceeeee-EEEEEecCCcccccccCcEEEE
Confidence 355689999999999999999999864211000 0111222110 1223333 3689
Q ss_pred EEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 988 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 988 niiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
+||||||+.+|...+..+++.+|++|+|+|++++...+. ...+..+.. .++|+++|+||+|+...+. ...+++.
T Consensus 73 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~ 151 (195)
T 3bc1_A 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRA-VKEEEAR 151 (195)
T ss_dssp EEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC-SCHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc-cCHHHHH
Confidence 999999999999999999999999999999987533332 333333333 5789999999999864321 1122222
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..... ..+|++++||++|. |++++++.|.+.+.
T Consensus 152 ~~~~~-------~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 152 ELAEK-------YGIPYFETSAANGT----------NISHAIEMLLDLIM 184 (195)
T ss_dssp HHHHH-------HTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHH-------cCCCEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 22222 23579999999998 99999999887653
No 271
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.57 E-value=7.9e-15 Score=157.74 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=105.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+......... ...+.+. ...+.+++ +.++||||||+.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~--------------~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYD--------------PTIEDSY---LKHTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--------------TTCCEEE---EEEEEETTEEEEEEEEECCSCGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------------CCcccee---EEEEEeCCcEEEEEEEECCCchh
Confidence 345799999999999999999998542111100 0111221 22233343 4677899999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
|......+++.+|++++|+|++++...+ ....+..+ ...++|+++|+||+|+.+.+. ...++.......
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-v~~~~~~~~~~~----- 152 (183)
T 3kkq_A 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK-VTRDQGKEMATK----- 152 (183)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC-SCHHHHHHHHHH-----
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccC-cCHHHHHHHHHH-----
Confidence 9999999999999999999998742221 12222222 235789999999999865321 111222222222
Q ss_pred cccCCcEEEeccc-cCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1073 EQLDFPVIYTSAL-HGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~-~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++++||+ +|. |++++++.|.+.+
T Consensus 153 --~~~~~~~~Sa~~~~~----------~v~~l~~~l~~~i 180 (183)
T 3kkq_A 153 --YNIPYIETSAKDPPL----------NVDKTFHDLVRVI 180 (183)
T ss_dssp --HTCCEEEEBCSSSCB----------SHHHHHHHHHHHH
T ss_pred --hCCeEEEeccCCCCC----------CHHHHHHHHHHHH
Confidence 23579999999 998 9999999998765
No 272
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=2.6e-15 Score=163.21 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=115.0
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD 997 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d 997 (1527)
+.+...+|+++|++|+|||||+++|+....... .....|++.......+...++.++||||||+.+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPA--------------FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCC--------------EEEEETTTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcc--------------cCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 446678999999999999999999986521100 011234455555555556778999999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|......+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.+.+.. ..++.......
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~------ 157 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVV-PTEKGQLLAEQ------ 157 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHHH------
T ss_pred HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc-CHHHHHHHHHH------
Confidence 99999999999999999999987422 222333444444 47899999999998643211 11222221111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++.+||++|. |++++++.+.+.+.
T Consensus 158 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 158 -LGFDFFEASAKENI----------SVRQAFERLVDAIC 185 (191)
T ss_dssp -HTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -cCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 24579999999998 99999999887653
No 273
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.57 E-value=6.7e-15 Score=155.07 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=102.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|++|+|||||+++|+...-..... ...+.+. ...+.+++ +.+.||||||+.+|.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--------------~t~~~~~---~~~~~~~~~~~~~~l~D~~G~~~~~ 66 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYE--------------PTKADSY---RKKVVLDGEEVQIDILDTAGQEDYA 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--------------TTCCEEE---EEEEEETTEEEEEEEEECCC---CH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCC--------------CCcceEE---EEEEEECCEEEEEEEEECCCcchhH
Confidence 4689999999999999999998653110000 0111111 12233443 589999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.....+++.+|++++|+|+++....+ ....+..+.. .++|+++|+||+|+.+.+. ...++.......
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~------- 138 (168)
T 1u8z_A 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRADQ------- 138 (168)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC-SCHHHHHHHHHH-------
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCc-cCHHHHHHHHHH-------
Confidence 99999999999999999998642212 2222233332 3789999999999865321 112233322221
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++++||++|. |++++++++.+.+
T Consensus 139 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 165 (168)
T 1u8z_A 139 WNVNYVETSAKTRA----------NVDKVFFDLMREI 165 (168)
T ss_dssp HTCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred cCCeEEEeCCCCCC----------CHHHHHHHHHHHH
Confidence 23579999999998 9999999998765
No 274
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.57 E-value=4.4e-15 Score=156.33 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=103.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~ 1000 (1527)
.+|+++|++|+|||||+++|+......... ...+.. . ...+.++ ...++||||||+.+|..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~-~--~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD--------------PTIEDF-Y--RKEIEVDSSPSVLEILDTAGTEQFAS 66 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC--------------TTCCEE-E--EEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCC--------------CCccee-E--EEEEEECCEEEEEEEEECCCchhhHH
Confidence 589999999999999999998652211000 001111 1 2223333 35699999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.....++.+|++++|+|+++.... .....+..+.. .++|+++|+||+|+...+. ...++....... .
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 138 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE-VSSSEGRALAEE-------W 138 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC-SCHHHHHHHHHH-------H
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccccc-CCHHHHHHHHHH-------h
Confidence 999999999999999999874221 12223333332 4799999999999854321 011222222111 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++++||++|. |++++++.+.+.+
T Consensus 139 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 164 (167)
T 1kao_A 139 GCPFMETSAKSKT----------MVDELFAEIVRQM 164 (167)
T ss_dssp TSCEEEECTTCHH----------HHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCc----------CHHHHHHHHHHHH
Confidence 4589999999998 9999999998765
No 275
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.57 E-value=1.9e-15 Score=173.88 Aligned_cols=153 Identities=21% Similarity=0.292 Sum_probs=112.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG- 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~- 1000 (1527)
..+|+++|++|+|||||+++|++... . .....|+|+..+...+.+ +..++||||||+.+|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~------~----------v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ------R----------VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC------C----------CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC------c----------ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC
Confidence 46899999999999999999985411 1 112258888877777777 88999999999998862
Q ss_pred -----HHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccc
Q psy1758 1001 -----EVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 -----ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~ 1072 (1527)
....++. .+|++++|+|++.. .....++..+.+.++|+++|+||+|+...+ .....+++..
T Consensus 66 ~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~--------- 134 (272)
T 3b1v_A 66 SPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY--------- 134 (272)
T ss_dssp SHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH---------
T ss_pred ChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH---------
Confidence 2334454 59999999999862 334445566677899999999999975321 1111222222
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.+++|++++||++|. |+++|++.+.+.+..
T Consensus 135 -~lg~~vi~~SA~~g~----------gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 135 -HLGVPVVATSALKQT----------GVDQVVKKAAHTTTS 164 (272)
T ss_dssp -HHTSCEEECBTTTTB----------SHHHHHHHHHHSCTT
T ss_pred -HcCCCEEEEEccCCC----------CHHHHHHHHHHHHhh
Confidence 124689999999998 999999999887643
No 276
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.57 E-value=1e-14 Score=174.60 Aligned_cols=157 Identities=27% Similarity=0.336 Sum_probs=105.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCCh---------hhHHHHHHhhcccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH---------EAFTAMRARGAKVT 140 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~---------e~f~~~~~~~~~~a 140 (1527)
+.|+++|++|+|||||+|+|.+..+.....+++|.+.....+.+++..+.+|||||+ +.|..... .+..+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~a 258 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYS 258 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGS
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhC
Confidence 359999999999999999999988777777889998888888899999999999996 55655443 67899
Q ss_pred CEEEEEEeCCCCC--cHHH----HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccccccc-CCCCcEEEeec
Q psy1758 141 DIVVLVVAADDGV--MPQT----REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEY-GGASPFISISA 213 (1527)
Q Consensus 141 D~~IlVvda~~g~--~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~iSA 213 (1527)
|++++|+|+++.. .... .+.+..+...+.|+++|.||+|+.+............ ....+ ....+++++||
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---l~~~l~~~~~~~~~~SA 335 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEK---LSKELYSPIFDVIPISA 335 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHH---HHHHHCSCEEEEEECBT
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHH---HHHHhcCCCCcEEEEEC
Confidence 9999999998754 2222 2223333235789999999999976432211111100 00011 11236899999
Q ss_pred cCCCChhHHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQA 230 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~~ 230 (1527)
++|.|+++|++.|....
T Consensus 336 ~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQLA 352 (364)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh
Confidence 99999999999997654
No 277
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.57 E-value=5.6e-15 Score=160.61 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=111.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+...+|+++|++|+|||||+++|+....... .....|.+.......+...+..+.||||||+.+|.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD--------------SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR 88 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS--------------CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh
Confidence 4567999999999999999999986522111 01223444444444444456789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+..+++.+|++|+|+|++++...+ ....+..+.. .++|+++|+||+|+...+.. ..++...... ..
T Consensus 89 ~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~ 160 (193)
T 2oil_A 89 AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREV-PTEEARMFAE-------NN 160 (193)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHH-------HT
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccccc-CHHHHHHHHH-------Hc
Confidence 99999999999999999998743222 2333344433 37899999999998653211 1222222221 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.++++++||++|. |++.+++.|.+.+
T Consensus 161 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 186 (193)
T 2oil_A 161 GLLFLETSALDST----------NVELAFETVLKEI 186 (193)
T ss_dssp TCEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 4579999999998 9999999988765
No 278
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.57 E-value=2.5e-15 Score=178.07 Aligned_cols=154 Identities=20% Similarity=0.171 Sum_probs=111.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC-eEEEEEeCCChhh-------HHHHHHhhcccc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-GSITFLDTPGHEA-------FTAMRARGAKVT 140 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-~~i~~iDTPG~e~-------f~~~~~~~~~~a 140 (1527)
-+.|+++|.+|+|||||+++|++........+++|.+.....+.+++ ..+.||||||+.. +.....+.+..+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 35799999999999999999998887667777888887777788776 7899999999643 223334445679
Q ss_pred CEEEEEEeCCC---CCcH-HHHHHHHHHHH-----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 141 DIVVLVVAADD---GVMP-QTREAIAHAKI-----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 141 D~~IlVvda~~---g~~~-qt~e~i~~~~~-----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
|++|+|+|+++ .... +...++..+.. .++|+++|+||+|+.... +....+... +....+++++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~------l~~~~~v~~i 309 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEK------LTDDYPVFPI 309 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHH------CCSCCCBCCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHH------hhcCCCEEEE
Confidence 99999999986 2222 22233334443 478999999999997632 111222211 1112579999
Q ss_pred eccCCCChhHHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~~ 230 (1527)
||+++.|+++|++.|....
T Consensus 310 SA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQL 328 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHH
Confidence 9999999999999997553
No 279
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=160.15 Aligned_cols=161 Identities=18% Similarity=0.191 Sum_probs=110.5
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.+...+|+++|++|+|||||+++|+...- .. +....++.+.....+.+++ +.++||||||+.
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAF--SE--------------RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCC--CC--------------CCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 35568999999999999999999986421 00 0111122233334555655 689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+|...+..+++.+|++|+|+|+++.... ....++..+.. .++|+++|+||+|+...+.. ..+++.+....
T Consensus 90 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~~----- 163 (201)
T 2hup_A 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREV-SLAEAQSLAEH----- 163 (201)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHHH-----
T ss_pred hHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccccc-CHHHHHHHHHH-----
Confidence 9999999999999999999999874222 22333344443 46899999999998653211 12233332222
Q ss_pred cccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+ +++++||++|. |++++++.|.+.+..
T Consensus 164 --~~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 164 --YDILCAIETSAKDSS----------NVEEAFLRVATELIM 193 (201)
T ss_dssp --TTCSEEEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred --cCCCEEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 234 79999999998 999999999887753
No 280
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=5.4e-15 Score=160.46 Aligned_cols=161 Identities=19% Similarity=0.189 Sum_probs=112.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+...... ......|.+.......+....+.+.||||||+.+|.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDP--------------ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCc--------------cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh
Confidence 455799999999999999999998652110 112223445444444444455789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.....+++.+|++|+|+|++++...+. ..++..+.. .++|+++|+||+|+...... .++.......
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~------- 149 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD--RNEGLKFARK------- 149 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSC--HHHHHHHHHH-------
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccC--HHHHHHHHHH-------
Confidence 999999999999999999987532222 223333333 36889999999999543211 1222222211
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..++++++||++|. |++++++.|.+.++.
T Consensus 150 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 150 HSMLFIEASAKTCD----------GVQCAFEELVEKIIQ 178 (195)
T ss_dssp TTCEEEECCTTTCT----------THHHHHHHHHHHHHT
T ss_pred cCCEEEEecCCCCC----------CHHHHHHHHHHHHHh
Confidence 24579999999998 999999999988754
No 281
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.57 E-value=5.7e-15 Score=157.99 Aligned_cols=160 Identities=17% Similarity=0.146 Sum_probs=107.7
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
..+..+|+++|++|+|||||+++|+........ ....+.+. ...+.+++ +.++||||||+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~---~~~~~~~~~~~~~~~~Dt~G~~ 68 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDY--------------DPTIEDSY---TKICSVDGIPARLDILDTAGQE 68 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC--------------CTTCCEEE---EEEEEETTEEEEEEEEECCCTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCcccc--------------CCCcCceE---EEEEEECCEEEEEEEEECCCch
Confidence 345679999999999999999999875211110 01112221 13344444 578999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
+|.......++.+|++++|+|+++... ......+..+ ...++|+++|+||+|+...+.. ..++......
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~----- 142 (181)
T 2fn4_A 69 EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQV-PRSEASAFGA----- 142 (181)
T ss_dssp TTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCS-CHHHHHHHHH-----
T ss_pred hhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccc-CHHHHHHHHH-----
Confidence 999888999999999999999987321 1122222222 2347899999999998643210 0112221111
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...++++++||++|. |++++++.|.+.+..
T Consensus 143 --~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 143 --SHHVAYFEASAKLRL----------NVDEAFEQLVRAVRK 172 (181)
T ss_dssp --HTTCEEEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred --HcCCeEEEecCCCCC----------CHHHHHHHHHHHHHH
Confidence 124579999999998 999999999887643
No 282
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.57 E-value=8.6e-15 Score=180.91 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=118.9
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC-Cch-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA-DFG- 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~-df~- 999 (1527)
..+|+|+|.+|+|||||+|+|+.... ..+....|+|.+.....+.+++..+.||||||+. ++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~---------------a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~ 307 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR---------------AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND 307 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB---------------CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCT
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC---------------CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchh
Confidence 36899999999999999999986521 1223346888888888899999999999999998 654
Q ss_pred -------HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1000 -------GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1000 -------~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
......+..+|++|+|+|++++...+...++..+ .+.|+++|+||+|+..... .+++.+.+ .
T Consensus 308 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~---~~~~~~~~---~--- 376 (482)
T 1xzp_A 308 LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKIN---EEEIKNKL---G--- 376 (482)
T ss_dssp TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCC---HHHHHHHH---T---
T ss_pred hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccC---HHHHHHHh---c---
Confidence 2345678999999999999988777776666554 4889999999999975411 22333221 1
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...|++++||++|. |+++|+++|.+.+.
T Consensus 377 --~~~~~i~iSAktg~----------Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 377 --TDRHMVKISALKGE----------GLEKLEESIYRETQ 404 (482)
T ss_dssp --CSTTEEEEEGGGTC----------CHHHHHHHHHHHTH
T ss_pred --CCCcEEEEECCCCC----------CHHHHHHHHHHHHh
Confidence 13579999999998 99999999988764
No 283
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.57 E-value=5.5e-15 Score=156.07 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=106.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df 998 (1527)
...+|+++|++|+|||||+++|+....... .....|.+. ....+.++ ...+.||||||+.+|
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--------------YKKTIGVDF--LERQIQVNDEDVRLMLWDTAGQEEF 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--------------SSCCCSSSE--EEEEEEETTEEEEEEEECCTTGGGT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCC--------------CCCceEEEE--EEEEEEECCEEEEEEEEcCCCcHhH
Confidence 457899999999999999999986421100 001112222 22333444 458999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH--cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~--~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
...+..+++.+|++++|+|+++.... .....+..+.. .+.|+++|+||+|+...+. ...+++...... .
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 139 (168)
T 1z2a_A 68 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSC-IKNEEAEGLAKR-------L 139 (168)
T ss_dssp TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCS-SCHHHHHHHHHH-------H
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccc-cCHHHHHHHHHH-------c
Confidence 88888999999999999999874322 22223333333 3899999999999864321 012222222221 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++++||++|. |++++++.|.+.+
T Consensus 140 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 140 KLRFYRTSVKEDL----------NVSEVFKYLAEKH 165 (168)
T ss_dssp TCEEEECBTTTTB----------SSHHHHHHHHHHH
T ss_pred CCeEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 3579999999998 9999999998765
No 284
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.57 E-value=3.2e-15 Score=160.14 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=97.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---CeEEEEEeCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHA 996 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~iniiDTPGh~ 996 (1527)
....+|+++|++|+|||||+++|+...... +..+.++.+.....+.++ ...+.||||||+.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ----------------QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT----------------TC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc----------------ccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 456799999999999999999998652110 011122222223344443 4689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH-------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~-------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
+|.......++.+|++|+|+|++++...+.. .++..+.. .++|+++|+||+|+.........+++......
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~- 148 (182)
T 1ky3_A 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS- 148 (182)
T ss_dssp -------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH-
T ss_pred HhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh-
Confidence 9998888889999999999999875332222 22222222 57899999999998543211112222222111
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
....|++++||++|. |++++++.|.+.+
T Consensus 149 -----~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 -----LGDIPLFLTSAKNAI----------NVDTAFEEIARSA 176 (182)
T ss_dssp -----TTSCCEEEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred -----cCCCeEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 124579999999998 9999999998765
No 285
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.56 E-value=2.6e-15 Score=164.99 Aligned_cols=159 Identities=20% Similarity=0.169 Sum_probs=108.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+....... ....++.+.....+.++ .+.+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------------YKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS----------------CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC----------------CCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4567999999999999999999986532110 01122223333334444 36899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH-------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 1069 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~-------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~ 1069 (1527)
|...+..+++.+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+..... ..+++......
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~-- 145 (207)
T 1vg8_A 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV--ATKRAQAWCYS-- 145 (207)
T ss_dssp GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS--CHHHHHHHHHH--
T ss_pred HHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccccc--CHHHHHHHHHh--
Confidence 988888888999999999999875332222222 22221 4789999999999974321 12222222211
Q ss_pred ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1070 ~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |+++++++|.+.++
T Consensus 146 ----~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 146 ----KNNIPYFETSAKEAI----------NVEQAFQTIARNAL 174 (207)
T ss_dssp ----TTSCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred ----cCCceEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 234689999999998 99999999988764
No 286
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.56 E-value=3.7e-15 Score=161.52 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=111.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|++|+|||||+++|+... +.. .....| .....+.++++.+++|||||+.+|..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~-------------~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~ 81 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGD--VVT-------------TVPTVG----VNLETLQYKNISFEVWDLGGQTGVRP 81 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSC--CEE-------------ECSSTT----CCEEEEEETTEEEEEEEECCSSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC--CCC-------------cCCCCc----eEEEEEEECCEEEEEEECCCCHhHHH
Confidence 45689999999999999999996431 110 011122 22345677889999999999999888
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+..+++.+|++++|+|++++... .....+..... .+.|+++|+||+|+.+... .+++.+.+.... ....
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~--~~~~ 156 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---EAEIAEQLGVSS--IMNR 156 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGG--CCSS
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---HHHHHHHhChhh--ccCC
Confidence 777788999999999999876432 22333444433 3789999999999976532 122332221111 1223
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.+|++++||++|. |++++++.+.+.++.
T Consensus 157 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 157 TWTIVKSSSKTGD----------GLVEGMDWLVERLRE 184 (189)
T ss_dssp CEEEEECCTTTCT----------THHHHHHHHHHHHHH
T ss_pred ceEEEEccCCCcc----------CHHHHHHHHHHHHHh
Confidence 5689999999998 999999999887753
No 287
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.56 E-value=1e-14 Score=165.78 Aligned_cols=166 Identities=14% Similarity=0.089 Sum_probs=116.3
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC-----
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH----- 995 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh----- 995 (1527)
...+|+++|++|+|||||+|+|++........ ...|+|.......+.+++..++||||||+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~ 85 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRL--------------GATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQV 85 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEETTEEEEEEECCSCSSTTH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccC--------------CCCCccccEEEEEEEECCcEEEEEECCCCCCCCC
Confidence 45789999999999999999999764322211 12356777777788899999999999998
Q ss_pred ---CCchHHHHHHH----HhcCEEEEEEeCCCCCChhHHHHHHHHHHc------CCccEEEEeccCCCCCChhhhHHH--
Q psy1758 996 ---ADFGGEVERIL----SMVDNVLLLIDAVEGPMPQTRFVTRKALKL------GFKPIVVVNKIDRSNARPEWVVDA-- 1060 (1527)
Q Consensus 996 ---~df~~ev~~~l----~~aD~ailVVDa~~G~~~qt~~~~~~~~~~------glp~IvviNKiD~~~a~~~~v~~~-- 1060 (1527)
.+|..++.+++ +.+|++|+|+|++. ...++...++.+.+. +.|+|+|.||+|+.+.+.++.+.+
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~ 164 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTE 164 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcc
Confidence 66777887777 89999999999975 666777777777664 789999999999987766555532
Q ss_pred ---HHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1061 ---TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1061 ---~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
++.+....+ .+++..++....+ ....|+.+|++.|.+.++.
T Consensus 165 ~~~l~~l~~~~g-------~~~~~~~~~~~~~-----~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 165 NRALRELVAECG-------GRVCAFDNRATGR-----EQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp CHHHHHHHHHTT-------TCEEECCTTCCHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcC-------CeEEEEeCCCCcc-----ccHHHHHHHHHHHHHHHHH
Confidence 344433332 2344444433200 0012889999999888864
No 288
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.56 E-value=2.8e-14 Score=171.14 Aligned_cols=156 Identities=21% Similarity=0.235 Sum_probs=112.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH---------HHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT---------AMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~---------~~~~~~~ 137 (1527)
.+.++|+++|++|+|||||+++|.+..+..+..+++|.+.....+...+..+.+|||||+..+. .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4678999999999999999999999887666677888887777777788899999999974321 1222334
Q ss_pred cccCEEEEEEeCCCCC--cHHH-HHHHHHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEee
Q psy1758 138 KVTDIVVLVVAADDGV--MPQT-REAIAHAKI--SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~--~~qt-~e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
..+|++++|+|+++.. ..+. .+++..+.. .+.|+++|+||+|+.............. . ...+++++|
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~------~--~~~~~~~iS 316 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVK------E--KGLNPIKIS 316 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHH------H--TTCCCEECB
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHH------h--cCCCeEEEe
Confidence 5699999999988743 3222 333333332 2799999999999976322111111111 1 135899999
Q ss_pred ccCCCChhHHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQA 230 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~~ 230 (1527)
|++|+|+++|+++|....
T Consensus 317 A~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999999997554
No 289
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.56 E-value=1.1e-14 Score=159.43 Aligned_cols=154 Identities=15% Similarity=0.187 Sum_probs=111.1
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.+|||||++.|..++..+++.+|++++|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 368999999999999999999998876666666666666667777775 567899999999987777788899999999
Q ss_pred EeCCCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+.. .++..+. ..+.|+++++||+|+.+... ......+.. . ..++++++||+++.|++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~------~--~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 85 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE------K--NNLSFIETSALDSTNVE 156 (199)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------H--TTCEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHH------H--cCCeEEEEeCCCCCCHH
Confidence 999874332222 2222222 24678999999999964211 111111111 1 12578999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++++.|....
T Consensus 157 ~l~~~l~~~~ 166 (199)
T 2f9l_A 157 EAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 290
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.56 E-value=9.8e-15 Score=153.97 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=104.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|++|+|||||+++|+......... ...+.+. .....+...++.++||||||+.+|....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 68 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYD--------------PTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMR 68 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCC--------------CCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------CCccceE-EEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 589999999999999999998642110000 1111111 1112222235689999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...++.+|++++|+|+++.... .....+..+.. .++|+++|+||+|+.+.+. ...+++......+ ..+
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------~~~ 141 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV-VGKEQGQNLARQW------CNC 141 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC-SCHHHHHHHHHHT------TSC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccccc-CCHHHHHHHHHHc------cCC
Confidence 9999999999999999873211 12223333333 3799999999999865321 1122222222111 145
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
|++++||++|. |++++++.|.+.+
T Consensus 142 ~~~~~Sa~~~~----------gi~~l~~~l~~~i 165 (167)
T 1c1y_A 142 AFLESSAKSKI----------NVNEIFYDLVRQI 165 (167)
T ss_dssp EEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred cEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 79999999998 9999999998765
No 291
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.56 E-value=1.3e-14 Score=155.96 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=107.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+...-..... ...+.+ ....+.+++ +.+.||||||+.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~---~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE--------------PTKADS---YRKKVVLDGEEVQIDILDTAGQED 78 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--------------TTCCEE---EEEEEEETTEEEEEEEEECCCTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCC--------------CccceE---EEEEEEECCEEEEEEEEECCCCcc
Confidence 345799999999999999999998653110000 011111 122233444 5899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
|...+..+++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+.+.+. ...+++......
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~----- 152 (187)
T 2a9k_A 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQ----- 152 (187)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC-SCHHHHHHHHHH-----
T ss_pred cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc-cCHHHHHHHHHH-----
Confidence 99999999999999999999986422112 222233322 3789999999999865321 112233332222
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++.|.+.+.
T Consensus 153 --~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 153 --WNVNYVETSAKTRA----------NVDKVFFDLMREIR 180 (187)
T ss_dssp --TTCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred --cCCeEEEeCCCCCC----------CHHHHHHHHHHHHH
Confidence 24579999999998 99999999987763
No 292
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=158.58 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=108.5
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.....+|+++|++|+|||||+++|+...-... . ....+.+. ...+.+++ +.+.||||||+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~-------------~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED-Y-------------EPTKADSY---RKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT-C-------------CTTCCEEE---EEEEEETTEEEEEEEEECCCTT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCC-C-------------CCccceEE---EEEEEECCEEEEEEEEcCCChh
Confidence 34567999999999999999999986531100 0 01111111 22344444 589999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
+|......+++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+.+.+. ...+++......
T Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~---- 148 (206)
T 2bov_A 74 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQ---- 148 (206)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC-SCHHHHHHHHHH----
T ss_pred hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccc-ccHHHHHHHHHH----
Confidence 999999999999999999999987422222 222233332 3789999999999865321 112233332222
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |+++++++|.+.+.
T Consensus 149 ---~~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 149 ---WNVNYVETSAKTRA----------NVDKVFFDLMREIR 176 (206)
T ss_dssp ---HTCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred ---hCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999988764
No 293
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.55 E-value=1.9e-14 Score=151.05 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=104.1
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~ 1000 (1527)
.+|+++|++|+|||||+++|+.....-...+. .+.. ....+.++ .+.+.+|||||+.+|..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPT--------------IEDS---YRKQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTT--------------CCEE---EEEEEEETTEEEEEEEEECCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCc--------------cceE---EEEEEEECCEEEEEEEEECCCchhhhH
Confidence 58999999999999999999865221100000 0111 11223333 35689999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
....++..+|++++|+|+++....+ ...++..+.. .++|+++|+||+|+.... ...++..+.... .
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~-------~ 137 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART--VESRQAQDLARS-------Y 137 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC--SCHHHHHHHHHH-------H
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc--cCHHHHHHHHHH-------c
Confidence 9999999999999999998642212 2233333333 279999999999987532 112222222222 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++.+||++|. |++++++.+.+.+
T Consensus 138 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 138 GIPYIETSAKTRQ----------GVEDAFYTLVREI 163 (166)
T ss_dssp TCCEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 3589999999998 9999999998765
No 294
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.55 E-value=1.1e-14 Score=169.94 Aligned_cols=162 Identities=17% Similarity=0.241 Sum_probs=110.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc------cccCCceeEEE----------------------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV------FSEAGGITQHI---------------------------------- 106 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~------~~~~~giT~~~---------------------------------- 106 (1527)
...++|+++|++|+|||||+|+|.+..+. .+..++.++-.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 46689999999999999999999988763 23334322110
Q ss_pred -----------EEEEEEeC-CeEEEEEeCCChh-------------hHHHHHHhhccccCEEE-EEEeCCCCCcHHHH-H
Q psy1758 107 -----------GAYNVVTN-HGSITFLDTPGHE-------------AFTAMRARGAKVTDIVV-LVVAADDGVMPQTR-E 159 (1527)
Q Consensus 107 -----------~~~~~~~~-~~~i~~iDTPG~e-------------~f~~~~~~~~~~aD~~I-lVvda~~g~~~qt~-e 159 (1527)
....+... ...++||||||+. .+..++..+++.++.++ +|+|++++...+.. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 01111122 3689999999952 57778888888888776 69999987766654 4
Q ss_pred HHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHH
Q psy1758 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAE 231 (1527)
Q Consensus 160 ~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~ 231 (1527)
++..+...+.|+++|+||+|+.+.... ....+. ....... .+..+++++||++|.|++++++.|.....
T Consensus 184 ~~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~-~~~~~~~-~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 184 IAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLE-NKLLPLR-RGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSCTTCC-CHHHHT-TCSSCCT-TCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHhCCCCCeEEEEEEccccCCCCch-HHHHHh-CCcCcCC-CCcEEEECCChhhccccccHHHHHHHHHH
Confidence 666666678999999999999763321 111121 1111100 12357899999999999999999986443
No 295
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.55 E-value=3.6e-15 Score=160.14 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=105.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
.+..+|+++|++|+|||||+++|+....... .....+.+. ...+.+++ +.++||||||+.+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDS--------------YDPTIENTF---TKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSC--------------CCTTCCEEE---EEEEEETTEEEEEEEEECCCCCT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCC--------------CCCCccccE---EEEEEECCEEEEEEEEeCCCchh
Confidence 4567999999999999999999985421111 011223333 22334444 6789999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
|.......++.+|++++|+|+++....+. ...+..+ ...++|+++|+||+|+...+.. ..++.......
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~----- 140 (181)
T 3t5g_A 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI-SYEEGKALAES----- 140 (181)
T ss_dssp TCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCS-CHHHHHHHHHH-----
T ss_pred hhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhccee-cHHHHHHHHHH-----
Confidence 98777788899999999999987322211 1222222 2347899999999998654311 12222222222
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+|++++||++|. |++++++.+.+.+..
T Consensus 141 --~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 141 --WNAAFLESSAKENQ----------TAVDVFRRIILEAEK 169 (181)
T ss_dssp --TTCEEEECCTTSHH----------HHHHHHHHHHHHHHT
T ss_pred --hCCcEEEEecCCCC----------CHHHHHHHHHHHHHH
Confidence 24579999999998 999999999887754
No 296
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.55 E-value=5e-15 Score=156.89 Aligned_cols=159 Identities=17% Similarity=0.107 Sum_probs=100.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+....... ....++.......+.+++ +.+.||||||+.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDK----------------HITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSS----------------CCCCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcC----------------CCCccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 3457999999999999999999986521100 011122222223344433 5789999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|.......++.+|++++|+|++++...+. ..++..+.. .++|+++|+||+|+...+.. ..++.......
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~------ 140 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHV-SIQEAESYAES------ 140 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCS-CHHHHHHHHHH------
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccccc-CHHHHHHHHHH------
Confidence 98888888899999999999987432222 222233322 47899999999998653211 12222222221
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++.+.+.++
T Consensus 141 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 141 -VGAKHYHTSAKQNK----------GIEELFLDLCKRMI 168 (170)
T ss_dssp -TTCEEEEEBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -cCCeEEEecCCCCC----------CHHHHHHHHHHHHh
Confidence 23579999999998 99999999988764
No 297
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.55 E-value=8.1e-15 Score=159.27 Aligned_cols=160 Identities=18% Similarity=0.125 Sum_probs=108.4
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.....+|+++|++|+|||||+++|+....... .....|.+... ..+.+++ ..++||||||+.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------HDLTIGVEFGA--RMVNIDGKQIKLQIWDTAGQE 81 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEEE--EEEEETTEEEEEEEECCTTGG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------CCCcccceeEE--EEEEECCEEEEEEEEECCCch
Confidence 34567999999999999999999986522110 01112333322 3344444 689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+|...+..+++.+|++|+|+|+++....+. ...+..+.. .++|+++|+||+|+...+.. ..++.......
T Consensus 82 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~----- 155 (191)
T 2a5j_A 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDV-KREEGEAFARE----- 155 (191)
T ss_dssp GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHHH-----
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcccc-CHHHHHHHHHH-----
Confidence 999888899999999999999987432222 333344443 37899999999998642210 11222222211
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..++++.+||++|. |++++++.|.+.+.
T Consensus 156 --~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 156 --HGLIFMETSAKTAC----------NVEEAFINTAKEIY 183 (191)
T ss_dssp --HTCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred --cCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 24579999999998 99999999887653
No 298
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.55 E-value=2.6e-15 Score=171.56 Aligned_cols=157 Identities=11% Similarity=0.106 Sum_probs=100.9
Q ss_pred ccCCCEEEEEecC---------CCChhHHHHHHHc---cccccccCCce-eEEEEEE----------------EEEeCCe
Q psy1758 66 LVRAPIVTIMGHV---------DHGKTSLLDYIRK---TNVVFSEAGGI-TQHIGAY----------------NVVTNHG 116 (1527)
Q Consensus 66 ~~r~~~V~IvG~~---------~~GKTSLl~~L~~---~~~~~~~~~gi-T~~~~~~----------------~~~~~~~ 116 (1527)
..+..+|+++|.+ |+|||||+++|.+ ..+...+.+++ +.++... .+.....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4566899999999 9999999999998 44544444443 2221111 0122334
Q ss_pred EEEEEe-----------------------CCChhhHHHHHHhhcc---------------------ccCEEEEEEeCCCC
Q psy1758 117 SITFLD-----------------------TPGHEAFTAMRARGAK---------------------VTDIVVLVVAADDG 152 (1527)
Q Consensus 117 ~i~~iD-----------------------TPG~e~f~~~~~~~~~---------------------~aD~~IlVvda~~g 152 (1527)
.+.||| ++|+++|..++..+++ .||++|+|+|+++.
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 788999 6666666666666666 79999999999985
Q ss_pred --CcHH----HHHHHHHH-HHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 153 --VMPQ----TREAIAHA-KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 153 --~~~q----t~e~i~~~-~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
...+ |...+... ...++|+++|+||+|+...........+. ... ..++++++||++|.|++++|+.
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~------~~~-~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA------LSK-KNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHH------HTS-SSCCEEECBTTTTBSHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHH------Hhc-CCCeEEEEECCCCCCHHHHHHH
Confidence 3222 22222222 34579999999999996532111111111 111 1358999999999999999999
Q ss_pred HHHH
Q psy1758 226 ISLQ 229 (1527)
Q Consensus 226 l~~~ 229 (1527)
|...
T Consensus 249 l~~~ 252 (255)
T 3c5h_A 249 LVQL 252 (255)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9754
No 299
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.55 E-value=6.7e-15 Score=159.52 Aligned_cols=159 Identities=20% Similarity=0.231 Sum_probs=103.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
.+..+|+++|++|+|||||+++|+....... .....|.+. ....+.+++ ..++||||||+.+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR--------------TEATIGVDF--RERAVDIDGERIKIQLWDTAGQER 81 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS--------------CCCCCSCCE--EEEEEEETTEEEEEEEEECCCSHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCCcceEE--EEEEEEECCEEEEEEEEECCCchh
Confidence 4568999999999999999999986421100 011122222 233344444 6899999999999
Q ss_pred ch-HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 998 FG-GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 998 f~-~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
|. ..+..+++.+|++|+|+|+++....+. ...+..+. ..++|+++|+||+|+.+.+.. ..++......
T Consensus 82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~----- 155 (189)
T 1z06_A 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQV-PTDLAQKFAD----- 155 (189)
T ss_dssp HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCS-CHHHHHHHHH-----
T ss_pred hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccee-CHHHHHHHHH-----
Confidence 88 677788999999999999987422222 22223333 247899999999998643210 1122222111
Q ss_pred ccccCCcEEEeccccC---CcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1072 EEQLDFPVIYTSALHG---YANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g---~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...++++.+||++| . |+.++++.|.+.++
T Consensus 156 --~~~~~~~~~Sa~~~~~~~----------~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 156 --THSMPLFETSAKNPNDND----------HVEAIFMTLAHKLK 187 (189)
T ss_dssp --HTTCCEEECCSSSGGGGS----------CHHHHHHHHC----
T ss_pred --HcCCEEEEEeCCcCCccc----------CHHHHHHHHHHHHh
Confidence 12458999999999 6 89999999987764
No 300
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=1e-14 Score=158.69 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=108.9
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.....+|+++|++|+|||||+++|+.........+. .|.+. ...+.+++ +.++||||||+.
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t--------------~~~~~---~~~~~~~~~~~~~~i~D~~G~~ 77 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT--------------VFDHY---AVSVTVGGKQYLLGLYDTAGQE 77 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCS--------------SCCCE---EEEEESSSCEEEEEEECCCCSS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--------------cccee---EEEEEECCEEEEEEEEECCCCc
Confidence 345679999999999999999999865211100000 11111 12334444 689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhH-H-HHHHHHHHc--CCccEEEEeccCCCCCChh-----------hhHHHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQT-R-FVTRKALKL--GFKPIVVVNKIDRSNARPE-----------WVVDAT 1061 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~-~~~~~~~~~--glp~IvviNKiD~~~a~~~-----------~v~~~~ 1061 (1527)
+|......+++.+|++++|+|+++....+. . .++..+... ++|+++|+||+|+...... -..++.
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 157 (194)
T 2atx_A 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQG 157 (194)
T ss_dssp SSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHH
T ss_pred chhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHH
Confidence 999888888999999999999987432222 2 233444444 8999999999999764210 001111
Q ss_pred HHHHhhhcccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1062 FDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1062 ~~~~~~l~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
...... ..+ +++.+||++|. |++++++.+.+.+..|
T Consensus 158 ~~~~~~-------~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 158 QKLAKE-------IGACCYVECSALTQK----------GLKTVFDEAIIAILTP 194 (194)
T ss_dssp HHHHHH-------HTCSCEEECCTTTCT----------THHHHHHHHHHHHHCC
T ss_pred HHHHHH-------cCCcEEEEeeCCCCC----------CHHHHHHHHHHHHhcC
Confidence 111111 123 79999999998 9999999998876543
No 301
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.55 E-value=4.6e-16 Score=170.43 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=103.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.+...+|+++|++|+|||||+++|+..... .+..++++.+.....+.+++ +.++||||||+.
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYT----------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCC----------------CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 356789999999999999999999743111 11123344444445566665 679999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCccEEEEeccCCCCCChh--hhHHHHHHHHhhhcc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPE--WVVDATFDLFDKLCA 1070 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~~---glp~IvviNKiD~~~a~~~--~v~~~~~~~~~~l~~ 1070 (1527)
+|...+..+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+.. +...++.
T Consensus 94 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-------- 165 (199)
T 3l0i_B 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA-------- 165 (199)
T ss_dssp TCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH--------
T ss_pred hHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH--------
Confidence 999888889999999999999998533222 2333334333 7899999999998654311 1111111
Q ss_pred cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1071 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1071 ~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
....+|++++||++|. |+++++++|.+.+.
T Consensus 166 --~~~~~~~~~vSA~~g~----------gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 166 --DSLGIPFLETSAKNAT----------NVEQSFMTMAAEIK 195 (199)
T ss_dssp --HTTTCCBCCCCC---H----------HHHHHHHHHTTTTT
T ss_pred --HHcCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 1234678999999998 99999999987764
No 302
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.54 E-value=3.3e-14 Score=159.35 Aligned_cols=162 Identities=15% Similarity=0.063 Sum_probs=106.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|.+|+|||||+++|+..... .....++|.......+.+++..+.||||||+.++.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 90 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD----------------VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE----------------EECC-----CEEEEEEEETTEEEEEEECTTTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc----------------cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcc
Confidence 34579999999999999999999864210 11124566666666777888999999999995421
Q ss_pred ---------HHHHHHHHhcCEEEEEEeCCCCCChh---HHHHHHHHHHc--CCccEEEEeccCCCCCCh--hhhHHHHHH
Q psy1758 1000 ---------GEVERILSMVDNVLLLIDAVEGPMPQ---TRFVTRKALKL--GFKPIVVVNKIDRSNARP--EWVVDATFD 1063 (1527)
Q Consensus 1000 ---------~ev~~~l~~aD~ailVVDa~~G~~~q---t~~~~~~~~~~--glp~IvviNKiD~~~a~~--~~v~~~~~~ 1063 (1527)
..+......+|++|+|+|+++....+ ....+..+... ++|+++|+||+|+...+. ....+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 170 (228)
T 2qu8_A 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQ 170 (228)
T ss_dssp GGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHH
Confidence 12233467789999999998764422 23444555554 899999999999975421 111112222
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.....+ ..++++++||++|. |++++++.|.+.+.
T Consensus 171 ~~~~~~-----~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 171 ILDNVK-----NPIKFSSFSTLTGV----------GVEQAKITACELLK 204 (228)
T ss_dssp HHHHCC-----SCEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHhcC-----CCceEEEEecccCC----------CHHHHHHHHHHHHH
Confidence 111111 12579999999998 99999999988764
No 303
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.54 E-value=1.1e-14 Score=159.99 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=109.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+...... +..+.++.......+.+++ +.+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN----------------DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT----------------TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 456799999999999999999998652110 1112223333333445554 5899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++|+|+|++++...+.. .++..+.. .++|+++|+||+|+...+.. ..++......
T Consensus 70 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~------- 141 (206)
T 2bcg_Y 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVV-EYDVAKEFAD------- 141 (206)
T ss_dssp TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS-CHHHHHHHHH-------
T ss_pred HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc-CHHHHHHHHH-------
Confidence 998888889999999999999875332322 22333333 35889999999999754311 1122222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |++++++.|.+.+.
T Consensus 142 ~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 142 ANKMPFLETSALDST----------NVEDAFLTMARQIK 170 (206)
T ss_dssp HTTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999987764
No 304
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.54 E-value=7.9e-15 Score=170.61 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=100.8
Q ss_pred EEEEEecCCCChhHHHHHHHcccccc---ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH---HHHhhccccCEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVF---SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA---MRARGAKVTDIVV 144 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~---~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~---~~~~~~~~aD~~I 144 (1527)
+|+++|+.|+|||||++++....+.. ...+++..+.. .+. ...++++|||||||+|.. ++..+++.++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~--~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I 77 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE--HFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV 77 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE--EEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE--EEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEE
Confidence 58999999999999999887553321 12233333332 231 235899999999999964 5788899999999
Q ss_pred EEEeCCCCCcHHHHHH----HHHHH--HcCCCEEEEEEcccCCcchhH-----HHHHHHhhhccccccc-CCCCcEEEee
Q psy1758 145 LVVAADDGVMPQTREA----IAHAK--ISGVPLIVAINKIDKLDINLD-----RIKQDLISEQVIPEEY-GGASPFISIS 212 (1527)
Q Consensus 145 lVvda~~g~~~qt~e~----i~~~~--~~~vpiIvviNKiDl~~~~~~-----~~~~~l~~~~~~~~~~-~~~~~v~~iS 212 (1527)
+|+|+++. .....+. +..+. ..++|+++++||+|+.+.+.. .+..+..+ ....... +..++|+++|
T Consensus 78 lV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~-~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 78 YVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGE-ELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHH-TTSSSSCSCCCEEEECCC
T ss_pred EEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHH-HHHhhcccccCceEEEec
Confidence 99999987 3333332 33332 247899999999999764321 11111111 1111100 1347899999
Q ss_pred ccCCCChhHHHHHHH
Q psy1758 213 AKTGVGINKLLENIS 227 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~ 227 (1527)
|++ .||.+.|..++
T Consensus 156 Akd-~nV~eAFs~iv 169 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIV 169 (331)
T ss_dssp SSS-SHHHHHHHHHH
T ss_pred cCC-CcHHHHHHHHH
Confidence 998 58999999987
No 305
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.54 E-value=8.6e-15 Score=162.37 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=106.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec------------CeEE
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------------GTRI 987 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~------------~~~i 987 (1527)
+...+|+++|++|+|||||+++|+...... +....++++.....+.++ ...+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP----------------KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCC----------------EEEEEEEEEEEEEEEEEEC-------CCEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCc----------------CCCCceeEEEEEEEEEECCccccccccCceeEEE
Confidence 456799999999999999999998542110 001112222222233333 5689
Q ss_pred EEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH----cCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 988 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK----LGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 988 niiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
+||||||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+...+.. ..+++.
T Consensus 87 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~ 165 (217)
T 2f7s_A 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREV-NERQAR 165 (217)
T ss_dssp EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS-CHHHHH
T ss_pred EEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccccc-CHHHHH
Confidence 9999999999999999999999999999999874322222222 22221 46899999999998653210 112222
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.... ...++++++||++|. |+++++++|.+.+.
T Consensus 166 ~~~~-------~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 166 ELAD-------KYGIPYFETSAATGQ----------NVEKAVETLLDLIM 198 (217)
T ss_dssp HHHH-------HTTCCEEEEBTTTTB----------THHHHHHHHHHHHH
T ss_pred HHHH-------HCCCcEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 2221 124689999999998 99999999887653
No 306
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=1.9e-14 Score=158.32 Aligned_cols=159 Identities=20% Similarity=0.166 Sum_probs=109.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+...-.. +....++++.....+.+++ +.++||||||+.+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 87 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP----------------GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 456799999999999999999998642110 0112222333334455555 5899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|......+++.+|++|+|+|+++....+. ...+..+.. .++|+++|+||+|+.+.+. -..++......
T Consensus 88 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~-v~~~~~~~~~~------- 159 (201)
T 2ew1_A 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE-VSQQRAEEFSE------- 159 (201)
T ss_dssp GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCS-SCHHHHHHHHH-------
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCHHHHHHHHH-------
Confidence 99888888999999999999987432221 233333333 3688999999999864321 01122222111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |++++++.+.+.+.
T Consensus 160 ~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 160 AQDMYYLETSAKESD----------NVEKLFLDLACRLI 188 (201)
T ss_dssp HHTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124579999999998 99999999987764
No 307
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.54 E-value=1.3e-14 Score=158.39 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=106.8
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEE---ecCeEEEEEeCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE---YNGTRINIIDTP 993 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~---~~~~~iniiDTP 993 (1527)
.+.++..+|+++|..|+|||||+++|++... .. ...|.+.......+. ...+.++|||||
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~ 77 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMS---PN--------------ETLFLESTNKIYKDDISNSSFVNFQIWDFP 77 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCC---GG--------------GGGGCCCCCSCEEEEECCTTSCCEEEEECC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCC---Cc--------------ceeeeccccceeeeeccCCCeeEEEEEECC
Confidence 3445677999999999999999998865311 10 111222222223333 345789999999
Q ss_pred CCCCchHHH---HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH-----cCCccEEEEeccCCCCCCh-----hhhHHH
Q psy1758 994 GHADFGGEV---ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARP-----EWVVDA 1060 (1527)
Q Consensus 994 Gh~df~~ev---~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~-----~~v~~~ 1060 (1527)
|+.+|.... ..+++.+|++|+|+|+++........+...+.+ .++|+++|.||+|+.+.+. ..+..+
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~ 157 (196)
T 3llu_A 78 GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQR 157 (196)
T ss_dssp SSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred CCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHH
Confidence 999998877 789999999999999998733333333333333 3789999999999865321 111111
Q ss_pred HHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1061 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1061 ~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
....+.... .....++++.+||++ . |++++++.+++.+
T Consensus 158 ~~~~~~~~~--~~~~~~~~~e~Sa~~-~----------~v~~~f~~l~~~l 195 (196)
T 3llu_A 158 ANDDLADAG--LEKLHLSFYLTSIYD-H----------SIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHTT--CTTSCEEEEEECTTS-T----------HHHHHHHHHHHHT
T ss_pred HHHHHHHhh--hhcCCcceEEEEech-h----------hHHHHHHHHHHHh
Confidence 112121111 113457899999999 8 9999999998754
No 308
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.53 E-value=6.2e-15 Score=161.70 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=106.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+...... +..+.++.+.....+.+++ +.++||||||+.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 86 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ----------------DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEETTEEEEEEEECCTTHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc----------------cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh
Confidence 456799999999999999999998542110 0112222222333444555 7899999999988
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++|+|+|++++...+. ...+..+.. .++|+++|+||+|+...+.. ...+......
T Consensus 87 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~------- 158 (200)
T 2o52_A 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREV-TFLEASRFAQ------- 158 (200)
T ss_dssp HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHH-------
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccc-CHHHHHHHHH-------
Confidence 88888889999999999999987433222 223333333 37899999999998643211 1122222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...++++++||++|. |++++++.|.+.+.
T Consensus 159 ~~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 159 ENELMFLETSALTGE----------NVEEAFLKCARTIL 187 (200)
T ss_dssp HTTCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999887664
No 309
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.53 E-value=2.1e-14 Score=151.97 Aligned_cols=156 Identities=19% Similarity=0.157 Sum_probs=95.9
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|++|+|||||+++|+......... ...+.+.....+.+++ +.+.+|||||+.+|.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE----------------MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc----------------CCCcCCeeeEEEEECCeEEEEEEEECCCccccc
Confidence 4689999999999999999997542221110 1112222223334444 678899999999987
Q ss_pred H-HHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHHc----CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 1000 G-EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKL----GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1000 ~-ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~~----glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
. .....++.+|++++|+|+++.... .....+..+... ++|+++|+||+|+.+.+. ...++......
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~------- 137 (169)
T 3q85_A 66 GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE-VSLEEGRHLAG------- 137 (169)
T ss_dssp ----CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC-SCHHHHHHHHH-------
T ss_pred hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhccc-CCHHHHHHHHH-------
Confidence 6 444568899999999999873211 222333333332 789999999999864321 11122222111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...+|++++||++|. |++++++.+.+.+
T Consensus 138 ~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 165 (169)
T 3q85_A 138 TLSCKHIETSAALHH----------NTRELFEGAVRQI 165 (169)
T ss_dssp HTTCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred HcCCcEEEecCccCC----------CHHHHHHHHHHHH
Confidence 124579999999998 9999999998765
No 310
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=172.50 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=109.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+|+|++|+|||||+++|+... +. .. . .|+......+.++++.++||||||+.+|..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~--~~----------~~---~----pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGE--IV----------TT---I----PTIGFNVETVEYKNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSC--CE----------EE---E----EETTEEEEEEEETTEEEEEEECC-----CC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCC--CC----------Cc---c----cccceEEEEEecCcEEEEEEECCCCHhHHH
Confidence 44689999999999999999997542 10 00 1 144444566788999999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
....+++.+|++|+|+|+++.... .....+..... .++|+++|+||+|+.+... .+++...+.... ....
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~i~~~~~~~~--~~~~ 299 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS--LRHR 299 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTCTT--CCSS
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---HHHHHHHhchhh--hhcC
Confidence 999999999999999999864332 22333333322 2789999999999986542 223333222111 1224
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+|++++||++|. |+++|++.|.+.+.
T Consensus 300 ~~~~~~vSAk~g~----------gi~el~~~l~~~l~ 326 (329)
T 3o47_A 300 NWYIQATCATSGD----------GLYEGLDWLSNQLR 326 (329)
T ss_dssp CEEEEECBTTTTB----------THHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCc----------CHHHHHHHHHHHHH
Confidence 5789999999998 99999999988764
No 311
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=2.8e-14 Score=155.45 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=107.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|++|+|||||+++|+......... ...+.+.. ....+....+.+.||||||+.+|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~ 71 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYI--------------PTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPA 71 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTS--------------CCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCccc--------------Ccccccee-EEEEECCEEEEEEEEeCCChHHhHH
Confidence 45689999999999999999998642110000 01111111 1122222346899999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
....+++.+|++++|+|+++... .....++..+.+ .++|+++|+||+|+...... .++.......
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~------- 142 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVD--TREAQAVAQE------- 142 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSC--HHHHHHHHHH-------
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccC--HHHHHHHHHH-------
Confidence 99999999999999999986322 122233333333 36899999999999753211 1222221111
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..++++++||++|. |+++++++|.+.+...
T Consensus 143 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 143 WKCAFMETSAKMNY----------NVKELFQELLTLETRR 172 (199)
T ss_dssp HTCEEEECBTTTTB----------SHHHHHHHHHHHCSSS
T ss_pred hCCeEEEEecCCCC----------CHHHHHHHHHHHHhhh
Confidence 23579999999998 9999999999987644
No 312
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.53 E-value=5.2e-15 Score=159.18 Aligned_cols=168 Identities=15% Similarity=0.077 Sum_probs=107.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|++|+|||||+++|+...-.-...+. .+.+. .....+....+.+.||||||+.+|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t--------------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT--------------VFDNY-SANVMVDGKPVNLGLWDTAGQEDYDR 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCC--------------SCCEE-EEEEEETTEEEEEEEECCCCSGGGTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc--------------cccee-EEEEEECCEEEEEEEEECCCCHhHHH
Confidence 3468999999999999999999864211110000 01111 11112222345778999999999988
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHH------hhhcc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLF------DKLCA 1070 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~------~~l~~ 1070 (1527)
....+++.+|++++|+|++++...+.. .++..+... ++|+++|+||+|+.... ...+.+.+.. .+...
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc--hhhhhhcccccccCCHHHHHH
Confidence 877888999999999999874333222 233344443 89999999999986542 1111111100 00000
Q ss_pred cccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1071 TEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1071 ~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
......+ |++++||++|. |++++++.+.+.++.|.
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQR----------GLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHHHTTCSEEEECCTTTCT----------THHHHHHHHHHHHSCCC
T ss_pred HHHhcCCcEEEEecCCCcc----------CHHHHHHHHHHHHhccc
Confidence 0011233 89999999998 99999999999887654
No 313
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.53 E-value=2.8e-14 Score=155.99 Aligned_cols=174 Identities=18% Similarity=0.152 Sum_probs=107.7
Q ss_pred cCcccccccccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--e
Q psy1758 908 HGQNLFLSDENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--T 985 (1527)
Q Consensus 908 nG~~i~lsq~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~ 985 (1527)
.|+.....+.+.+...+|+++|.+|+|||||+++|+.....+... .+++.+.....+.+++ +
T Consensus 9 ~~~~~~~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 72 (195)
T 3cbq_A 9 SGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE----------------PENPEDTYERRIMVDKEEV 72 (195)
T ss_dssp -------------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT----------------TTSCTTEEEEEEEETTEEE
T ss_pred CCCccccCCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC----------------CCcccceEEEEEEECCEEE
Confidence 344444445555677899999999999999999997543322111 1122222223344444 5
Q ss_pred EEEEEeCCCCCCchH-HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHH
Q psy1758 986 RINIIDTPGHADFGG-EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVD 1059 (1527)
Q Consensus 986 ~iniiDTPGh~df~~-ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~ 1059 (1527)
.+.||||||+.+|.. ....+++.+|++|+|+|+++... ......+..+.. .++|+++|.||+|+...+.. ..+
T Consensus 73 ~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~ 151 (195)
T 3cbq_A 73 TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV-SLE 151 (195)
T ss_dssp EEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCS-CHH
T ss_pred EEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCc-CHH
Confidence 778999999998876 44556889999999999986321 122233333333 37899999999999754311 122
Q ss_pred HHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1060 ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1060 ~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
+....... ..++++.+||++|. |++++++.+++.+....
T Consensus 152 ~~~~~a~~-------~~~~~~e~Sa~~~~----------~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 152 EGRHLAGT-------LSCKHIETSAALHH----------NTRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHH-------TTCEEEEEBTTTTB----------SHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-------hCCEEEEEcCCCCC----------CHHHHHHHHHHHHHHhc
Confidence 22222111 23579999999998 99999999998886544
No 314
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.52 E-value=7.1e-15 Score=160.04 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=107.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+.........+ ..|.+.. ..+.++ .+.++||||||+.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~--------------t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~ 83 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVP--------------TVFENFS---HVMKYKNEEFILHLWDTAGQEE 83 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCC--------------CSEEEEE---EEEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCC--------------eeeeeeE---EEEEECCEEEEEEEEECCCcHH
Confidence 3457999999999999999999986532111011 1122221 123333 35679999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH--HHHHHHHHHc--CCccEEEEeccCCCCCCh-hhhHHHHHHHHhhhcccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt--~~~~~~~~~~--glp~IvviNKiD~~~a~~-~~v~~~~~~~~~~l~~~~ 1072 (1527)
|......+++.+|++++|+|+++....+. ..++..+... ++|+++|+||+|+...+. ....++.......+
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---- 159 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL---- 159 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH----
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc----
Confidence 99888889999999999999987432222 2222333333 689999999999875321 11223333322222
Q ss_pred cccCCc-EEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDFP-VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~p-vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.++ ++++||++|. |++++++.+.+.+..
T Consensus 160 ---~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 160 ---GCVAYIEASSVAKI----------GLNEVFEKSVDCIFS 188 (194)
T ss_dssp ---TCSCEEECBTTTTB----------SHHHHHHHHHHHHHC
T ss_pred ---CCCEEEEeecCCCC----------CHHHHHHHHHHHHHh
Confidence 344 8999999998 999999999987743
No 315
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.52 E-value=4.8e-15 Score=159.03 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=101.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|++|+|||||+++|+.........+.+ |... .....+......++||||||+.+|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 71 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV--------------FDNF-SANVVVNGATVNLGLWDTAGQEDYNR 71 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------C-BCCCC-------CEEECCCC-CTTTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCee--------------eeeE-EEEEEECCEEEEEEEEECCCChhhhh
Confidence 44689999999999999999998653111100100 0000 00111222346678999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChh---------hhHHHHHHHHhh
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPE---------WVVDATFDLFDK 1067 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~---------~v~~~~~~~~~~ 1067 (1527)
....+++.+|++++|+|+++....+.. .++..+... ++|+++|+||+|+.+.+.. -..++.......
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~ 151 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL 151 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH
Confidence 888889999999999999874322222 233333332 7899999999998654311 011222221111
Q ss_pred hcccccccC-CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1068 LCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1068 l~~~~~~~~-~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.. .|++++||++|. |++++++.+.+.+..|
T Consensus 152 -------~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 152 -------IGAPAYIECSSKSQE----------NVKGVFDAAIRVVLQP 182 (182)
T ss_dssp -------HTCSEEEECCTTTCT----------THHHHHHHHHHHHSCC
T ss_pred -------cCCCEEEEEECCCCC----------CHHHHHHHHHHHHhcC
Confidence 12 379999999998 9999999999887654
No 316
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=158.93 Aligned_cols=163 Identities=16% Similarity=0.099 Sum_probs=107.2
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
..+..+|+++|++|+|||||+++|+........ ....+.+. .....+...++.++||||||+.+|
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--------------DPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEY 85 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--------------CCCSEEEE-EEEEC----CEEEEEEEECCCCTT
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--------------CCccceEE-EEEEEECCEEEEEEEEECCCccch
Confidence 345689999999999999999999865221110 01122222 233334456788999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
......+++.+|++++|+|+++....+. ...+..+.. .++|+++|+||+|+...+... ..+.......
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~~------ 158 (201)
T 3oes_A 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQ-AVEGKKLAES------ 158 (201)
T ss_dssp CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSC-HHHHHHHHHH------
T ss_pred HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccC-HHHHHHHHHH------
Confidence 8888888999999999999986422222 222333332 378999999999986433111 1111221111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..+|++.+||++|. |++++++.|.+.+...
T Consensus 159 -~~~~~~~~Sa~~~~----------~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 159 -WGATFMESSARENQ----------LTQGIFTKVIQEIARV 188 (201)
T ss_dssp -HTCEEEECCTTCHH----------HHHHHHHHHHHHHHHC
T ss_pred -hCCeEEEEeCCCCC----------CHHHHHHHHHHHHHhh
Confidence 23579999999998 9999999998877443
No 317
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.51 E-value=3.8e-14 Score=153.48 Aligned_cols=156 Identities=14% Similarity=0.156 Sum_probs=96.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
+..+|+++|++|+|||||+++|+......... ...+.. ....+.+++ +.+.||||||+.+|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~---~~~~~~~~~~~~~~~l~Dt~G~~~~ 82 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD--------------PTIEDS---YRKQVVIDGETCLLDILDTAGQEEY 82 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCC--------------TTCCEE---EEEEEEETTEEEEEEEEECCC----
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccC--------------CccceE---EEEEEEECCEEEEEEEEECCChHHH
Confidence 34689999999999999999998652110000 001111 112334444 56999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
......++..+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+..... ..+++.+....
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~------ 154 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTV--DTKQAHELAKS------ 154 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS--CHHHHHHHHHH------
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccC--CHHHHHHHHHH------
Confidence 9988899999999999999987533222 222233332 3789999999999865221 12233332222
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |+++++++|.+.+.
T Consensus 155 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 182 (190)
T 3con_A 155 -YGIPFIETSAKTRQ----------GVEDAFYTLVREIR 182 (190)
T ss_dssp -HTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred -cCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999987664
No 318
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.51 E-value=1.7e-14 Score=160.12 Aligned_cols=161 Identities=17% Similarity=0.114 Sum_probs=106.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+...-.. ......|.+....... ..++ +.++||||||+.+
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEK--------------NYNATVGAVNHPVTFL-DDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTC--------------EEETTTTEEEEEEEEE-BTTSCEEEEEEEEECSGGG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeeEEEEEE-eCCCcEEEEEEEecCCchh
Confidence 345799999999999999999998542110 0011122322221111 1122 6899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|.......+..+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+...+. ...++..... .
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~-------~ 145 (218)
T 4djt_A 74 KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQK-ISKKLVMEVL-------K 145 (218)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHT-------T
T ss_pred hchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCHHHHHHHH-------H
Confidence 988888889999999999999986443333222 33332 3689999999999865321 1111121111 1
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...++++++||++|. |++++++.+.+.+..
T Consensus 146 ~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 146 GKNYEYFEISAKTAH----------NFGLPFLHLARIFTG 175 (218)
T ss_dssp TCCCEEEEEBTTTTB----------TTTHHHHHHHHHHHC
T ss_pred HcCCcEEEEecCCCC----------CHHHHHHHHHHHHhc
Confidence 235689999999998 999999999987754
No 319
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.4e-14 Score=161.77 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=107.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+....... ..+.++.......+.+++ +.+.||||||+.+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD----------------SKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCcccceeEEEEEEECCEEEEEEEEECCCccc
Confidence 4567999999999999999999986522111 011222223333455555 6899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++|+|+|++++...+. ..++..+... ++|+++|+||+|+...+.. ..++......
T Consensus 75 ~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~------- 146 (223)
T 3cpj_B 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAV-PTEESKTFAQ------- 146 (223)
T ss_dssp TTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCS-CHHHHHHHHH-------
T ss_pred hhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccc-CHHHHHHHHH-------
Confidence 98888888999999999999987533232 2233344433 7899999999998643210 1122222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...+|++++||++|. |+++++++|.+.+..
T Consensus 147 ~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 147 ENQLLFTETSALNSE----------NVDKAFEELINTIYQ 176 (223)
T ss_dssp HTTCEEEECCCC-CC----------CHHHHHHHHHHHHTT
T ss_pred HcCCEEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 124579999999998 999999999988754
No 320
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.51 E-value=1.2e-14 Score=159.44 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=82.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----CeEEEEEeCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----GTRINIIDTPGH 995 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----~~~iniiDTPGh 995 (1527)
....+|+++|++|+|||||+++|+.....+.. +....+.++.....+.++ .+.+.||||||+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK--------------DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEEEC------------------------------------------------CEEEECTTSSEEEEEEEEETTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC--------------CCCCccceEEEEEEEEECCcccEEEEEEEECCCc
Confidence 45579999999999999999999854111110 000111122333455555 468999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH------cCCccEEEEeccCCCC-CChhhhHHHHHHHHhh
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK------LGFKPIVVVNKIDRSN-ARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~------~glp~IvviNKiD~~~-a~~~~v~~~~~~~~~~ 1067 (1527)
.+|...+..+++.+|++|+|+|++++... ....++..+.. .++|+++|+||+|+.. .+. -..+++.+....
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~-v~~~~~~~~~~~ 162 (208)
T 2yc2_C 84 DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ-VRLDMAQDWATT 162 (208)
T ss_dssp HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------C-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhcc-CCHHHHHHHHHH
Confidence 99988888888999999999999875332 22333344443 4789999999999975 221 112233332222
Q ss_pred hcccccccCCcEEEecccc-CCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1068 LCATEEQLDFPVIYTSALH-GYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~-g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..++++++||++ |. |++++++.|.+.+.
T Consensus 163 -------~~~~~~~~Sa~~~~~----------gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 163 -------NTLDFFDVSANPPGK----------DADAPFLSIATTFY 191 (208)
T ss_dssp -------TTCEEEECCC-----------------CHHHHHHHHHHH
T ss_pred -------cCCEEEEeccCCCCc----------CHHHHHHHHHHHHH
Confidence 236899999999 98 99999999987653
No 321
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.51 E-value=8.6e-15 Score=185.01 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=99.9
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEE------EEEe----CCeEEEEEeCCChhhHHHHHHh
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAY------NVVT----NHGSITFLDTPGHEAFTAMRAR 135 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~------~~~~----~~~~i~~iDTPG~e~f~~~~~~ 135 (1527)
..+..+|+++|++|+|||||+++|++..+.....+++..++... .+.. .+..+.+|||||++.|..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 34668999999999999999999999887655555444444322 1111 2458999999999999988888
Q ss_pred hccccCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 136 GAKVTDIVVLVVAADDGVMPQTREAIAHAKIS--GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 136 ~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~--~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
+++.+|++|+|+|+++. .....++..+... +.|+|+|+||+|+.+...... ...... .... ..+++++||
T Consensus 118 ~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~-~~~~~~---~~~~--~~~~~~vSA 189 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ-KKINER---FPAI--ENRFHRISC 189 (535)
T ss_dssp HHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCH-HHHHHH---CGGG--TTCEEECCC
T ss_pred HccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCH-HHHHHH---HHhc--CCceEEEec
Confidence 88999999999999874 3333444444443 599999999999975321111 111111 1111 247999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
++|.||++|++.|...
T Consensus 190 ~~g~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 190 KNGDGVESIAKSLKSA 205 (535)
T ss_dssp -----CTTHHHHHHHH
T ss_pred CcccCHHHHHHHHHHH
Confidence 9999999999999754
No 322
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.51 E-value=4.8e-14 Score=153.57 Aligned_cols=153 Identities=15% Similarity=0.178 Sum_probs=113.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeE--EEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS--ITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~--i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++.. +.+|||||+++|..++..+++.+|++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 34789999999999999999999988877777777877777778888764 5579999999988888888889999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|.++....+.. .++..+. ..+.|+++++||+|+.+... ......+.. . ..++++++||+++.|+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~------~--~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE------K--NGLSFIETSALDSTNV 179 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------H--TTCEEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH------H--cCCEEEEEeCCCCCCH
Confidence 9999874322221 1222222 24678999999999864211 111111211 1 1257899999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++++.|..
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 323
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=6.4e-15 Score=163.53 Aligned_cols=143 Identities=22% Similarity=0.279 Sum_probs=89.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccccc---ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccc----
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVF---SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKV---- 139 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~---~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~---- 139 (1527)
.+.++|+++|++|+|||||+++|.+..+.. +..++++.+. ....+.+|||||++.|...+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999887543 2334333322 45689999999999998888888876
Q ss_pred cCEEEEEEeCC-CC-CcHHHHHHHHHHH-------HcCCCEEEEEEcccCCcchh-HHHHHHHhhhc-ccccccCCCCcE
Q psy1758 140 TDIVVLVVAAD-DG-VMPQTREAIAHAK-------ISGVPLIVAINKIDKLDINL-DRIKQDLISEQ-VIPEEYGGASPF 208 (1527)
Q Consensus 140 aD~~IlVvda~-~g-~~~qt~e~i~~~~-------~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~-~~~~~~~~~~~v 208 (1527)
+|++++|+|++ +. ......+.+..+. ..++|+++|+||+|+..... ......+.... ...... ..++
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~--~~~~ 160 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR--KKSL 160 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH--hccc
Confidence 89999999998 32 2222222222221 25899999999999976533 22222221111 000111 1468
Q ss_pred EEeeccCCCC
Q psy1758 209 ISISAKTGVG 218 (1527)
Q Consensus 209 ~~iSAktg~g 218 (1527)
+++||++|.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 8999998875
No 324
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.50 E-value=3.8e-14 Score=163.58 Aligned_cols=153 Identities=17% Similarity=0.224 Sum_probs=91.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccccc-cc-------CCceeEEEEEEEEEeCCe--EEEEEeCCCh-------hhHHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVF-SE-------AGGITQHIGAYNVVTNHG--SITFLDTPGH-------EAFTA 131 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~-~~-------~~giT~~~~~~~~~~~~~--~i~~iDTPG~-------e~f~~ 131 (1527)
..+|+++|++|+|||||+|+|....... .. .++++.+.....+..++. ++++|||||+ +.|..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 3689999999999999999987766433 32 445556666565655554 8999999997 22333
Q ss_pred HH-------Hhhcc-------------ccCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHH
Q psy1758 132 MR-------ARGAK-------------VTDIVVLVVAADD-GVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIK 189 (1527)
Q Consensus 132 ~~-------~~~~~-------------~aD~~IlVvda~~-g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~ 189 (1527)
+. ..++. .+|+++++++... +..+...+.+..+.. ++|+|+|+||+|+..... ....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~ 166 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 166 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHH
Confidence 32 22222 2779999987665 788888888888776 899999999999875322 1222
Q ss_pred HHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHH
Q psy1758 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
..+.... . ...++++++||+++.|++++++.|.
T Consensus 167 ~~i~~~l---~--~~~i~v~~~sa~~~~~~~~l~~~l~ 199 (274)
T 3t5d_A 167 KQIMKEI---Q--EHKIKIYEFPETDDEEENKLVKKIK 199 (274)
T ss_dssp HHHHHHH---H--HTTCCCCCC-----------CHHHH
T ss_pred HHHHHHH---H--HcCCeEEcCCCCCChhHHHHHHHHh
Confidence 2221111 0 1235788999999999999999885
No 325
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.50 E-value=1.4e-13 Score=155.59 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=105.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCC--ceeEEEEEEEEEeCCeEEEEEeCCC-----------hhhHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAG--GITQHIGAYNVVTNHGSITFLDTPG-----------HEAFTAMR 133 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~--giT~~~~~~~~~~~~~~i~~iDTPG-----------~e~f~~~~ 133 (1527)
.+.++|+++|++|+|||||+++|.+..+.....+ ++|.+.....+.+++..++|||||| .+.+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999999999887655554 7788888888889999999999999 45666777
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHH-----HcCCCEEEEEEcccCCcch-hHHHHHHHh-hhcccccccCCCC
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAK-----ISGVPLIVAINKIDKLDIN-LDRIKQDLI-SEQVIPEEYGGAS 206 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~-----~~~vpiIvviNKiDl~~~~-~~~~~~~l~-~~~~~~~~~~~~~ 206 (1527)
..++..+|++|+|+|++. ......+.+..+. ....|+++|+||+|+.... ..+...... ......+.++.
T Consensus 107 ~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-- 183 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-- 183 (239)
T ss_dssp HHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS--
T ss_pred HhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--
Confidence 777788999999999975 3333333333321 2456999999999986532 111111000 00111223332
Q ss_pred cEEEeeccC-----CCChhHHHHHHHHHH
Q psy1758 207 PFISISAKT-----GVGINKLLENISLQA 230 (1527)
Q Consensus 207 ~v~~iSAkt-----g~gI~eL~~~l~~~~ 230 (1527)
.++.+++.. +.|+.+|++.+....
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 466666554 368999999886543
No 326
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.50 E-value=2.8e-14 Score=154.19 Aligned_cols=157 Identities=24% Similarity=0.275 Sum_probs=102.1
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC------
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA------ 996 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~------ 996 (1527)
.+|+++|++|+|||||+++|+...-. .+..+|+|...... .+. .+++|||||+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR----------------RGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS----------------SSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc----------------cCCCCCccceeEEE--ecC--CEEEEECCCccccccCC
Confidence 58999999999999999999865211 11223555443332 333 68999999953
Q ss_pred -----CchHHHHHHHHh----cCEEEEEEeCCC-----------CCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhh
Q psy1758 997 -----DFGGEVERILSM----VDNVLLLIDAVE-----------GPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEW 1056 (1527)
Q Consensus 997 -----df~~ev~~~l~~----aD~ailVVDa~~-----------G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~ 1056 (1527)
.|...+..+++. +++++.|+|+.. +..+++..++..+...++|+++|+||+|+...+ .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~ 140 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QE 140 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HH
Confidence 344444444443 567777777753 222334445556666799999999999997654 33
Q ss_pred hHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1057 VVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1057 v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+++... ++........+++++||++|. |++++++.+.+.++.
T Consensus 141 ~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 141 VINFLAEK---FEVPLSEIDKVFIPISAKFGD----------NIERLKNRIFEVIRE 184 (190)
T ss_dssp HHHHHHHH---HTCCGGGHHHHEEECCTTTCT----------THHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hhhhhhccCCcEEEEecCCCC----------CHHHHHHHHHHhcch
Confidence 33333332 222111112368999999998 999999999887753
No 327
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.49 E-value=1.6e-14 Score=159.04 Aligned_cols=163 Identities=14% Similarity=0.094 Sum_probs=104.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~d 997 (1527)
.+..+|+++|++|+|||||+++|+.....-.. .+++.......+.++ .+.++||||||+.+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY-----------------IPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C-----------------CCCSEEEEEEEEECC-CEEEEEEEEECCSGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc-----------------CCeecceeEEEEEECCEEEEEEEEECCCchh
Confidence 34579999999999999999999865221111 111111122223333 35677999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHH------hh
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLF------DK 1067 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~------~~ 1067 (1527)
|......+++.+|++++|+|++++...+.. .++..+... ++|+++|+||+|+...+. ..+.+.+.. .+
T Consensus 91 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~ 168 (204)
T 4gzl_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQ 168 (204)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH--HHHHHHHTTCCCCCHHH
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh--hhhhhhccccccccHHH
Confidence 998888889999999999999975433332 233344444 899999999999875431 111111100 00
Q ss_pred hcccccccC-CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1068 LCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1068 l~~~~~~~~-~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
......... .|++++||++|. |++++++.+.+.+
T Consensus 169 ~~~~~~~~~~~~~~~~SA~~g~----------gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 169 GLAMAKEIGAVKYLECSALTQR----------GLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHTTCSEEEECCTTTCT----------THHHHHHHHHHTT
T ss_pred HHHHHHhcCCcEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 000001112 369999999998 9999999998754
No 328
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.49 E-value=3.3e-14 Score=156.99 Aligned_cols=163 Identities=13% Similarity=0.081 Sum_probs=106.3
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df 998 (1527)
...+|+++|++|+|||||+++|+.........+. .|.+. ...+.++ .+.++||||||+.+|
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t--------------~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~ 70 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT--------------VFDNF---SANVAVDGQIVNLGLWDTAGQEDY 70 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCS--------------SCCCE---EEEEECSSCEEEEEEECCCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCc--------------cceeE---EEEEEECCEEEEEEEEECCCcHHH
Confidence 4578999999999999999999864211110000 11111 1122333 368999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChh-------hhHHHHHHHHhh
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPE-------WVVDATFDLFDK 1067 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~-------~v~~~~~~~~~~ 1067 (1527)
......+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+.+.+.. -..++.......
T Consensus 71 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (212)
T 2j0v_A 71 SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ 150 (212)
T ss_dssp CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence 98888889999999999999874322221 233344443 8999999999998654210 012222222222
Q ss_pred hcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC
Q psy1758 1068 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD 1116 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~ 1116 (1527)
++. .+++++||++|. |++++++.+.+.+..+..
T Consensus 151 ~~~------~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 151 IGA------AAYIECSSKTQQ----------NVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp HTC------SEEEECCTTTCT----------THHHHHHHHHHHHHCC--
T ss_pred cCC------ceEEEccCCCCC----------CHHHHHHHHHHHHhhhhh
Confidence 211 378999999998 999999999988865543
No 329
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.49 E-value=4.5e-14 Score=163.00 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=97.7
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF- 998 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df- 998 (1527)
..+|+++|++|+|||||+|+|+.........+.. .....+++++......+.+++ ..++||||||+.++
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~ 79 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP--------SHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV 79 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCc--------ccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccc
Confidence 3689999999999999999997652221111000 011134455555555666665 48999999998654
Q ss_pred ------hHHH-------HHHHHh-------------cCEEEEEEeCC-CCCChhHHHHHHHHHHcCCccEEEEeccCCCC
Q psy1758 999 ------GGEV-------ERILSM-------------VDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 1051 (1527)
Q Consensus 999 ------~~ev-------~~~l~~-------------aD~ailVVDa~-~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~ 1051 (1527)
...+ ..++.. +|+++++||++ ++..+....+++.+.. ++|+|+|+||+|+..
T Consensus 80 ~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 80 DNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLT 158 (274)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCC
Confidence 2222 445554 78899999665 4888888888888777 899999999999864
Q ss_pred CC-hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1052 AR-PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1052 a~-~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.. .....+.+.+.+. ...++++.+||++|. |+..+++.|.+.+|-
T Consensus 159 ~~e~~~~~~~i~~~l~-------~~~i~v~~~sa~~~~----------~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 159 PEECQQFKKQIMKEIQ-------EHKIKIYEFPETDDE----------EENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHHHHHHH-------HTTCCCCCC---------------------CHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHH-------HcCCeEEcCCCCCCh----------hHHHHHHHHhcCCCc
Confidence 21 1222233333221 124568889999998 899999999887763
No 330
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=3.9e-14 Score=156.11 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=106.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
...+|+++|++|+|||||+++|+........ ....+.+.. ..+.+++ ..+.||||||+.+|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~ 86 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--------------VPTVFENYV---ADIEVDGKQVELALWDTAGQEDY 86 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEETTEEEEEEEEECTTCTTC
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--------------CCcccceEE---EEEEECCEEEEEEEEECCCcHHH
Confidence 4569999999999999999999865221100 001111111 1233444 67999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH--HHHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhh------h
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDK------L 1068 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt--~~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~------l 1068 (1527)
......+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+.... ...+.+.+.... .
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~ 164 (207)
T 2fv8_A 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDG 164 (207)
T ss_dssp TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHH
Confidence 8888888899999999999987422121 2233444443 89999999999986542 112221111000 0
Q ss_pred cccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1069 CATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1069 ~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
........+ +++++||++|. |++++++.|.+.+..+.
T Consensus 165 ~~~~~~~~~~~~~~~SA~~g~----------gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 165 RAMAVRIQAYDYLECSAKTKE----------GVREVFETATRAALQKR 202 (207)
T ss_dssp HHHHHHTTCSEEEECCTTTCT----------THHHHHHHHHHHHHSCC
T ss_pred HHHHHhcCCCEEEEeeCCCCC----------CHHHHHHHHHHHHHHHh
Confidence 000011223 78999999998 99999999998876554
No 331
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.48 E-value=6.5e-14 Score=155.33 Aligned_cols=158 Identities=14% Similarity=0.053 Sum_probs=89.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df 998 (1527)
+..+|+++|++|+|||||+++|+...-.... ..++.......+.++ .+.++||||||+.+|
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESY-----------------TPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY 95 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC------------------------CCCCCEEEEEEEEETTEEEEEEEEEC------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC-----------------CCccceeEEEEEEECCEEEEEEEEECCCchhh
Confidence 3468999999999999999999854211000 001111111223333 357999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHH--cCCccEEEEeccCCCCCChh-hhH----------HHHHH
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALK--LGFKPIVVVNKIDRSNARPE-WVV----------DATFD 1063 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~--~glp~IvviNKiD~~~a~~~-~v~----------~~~~~ 1063 (1527)
......+++.+|++++|+|++++...+.. .++..+.. .++|+++|+||+|+...+.. +.+ ++...
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 175 (214)
T 2j1l_A 96 DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE 175 (214)
T ss_dssp ---------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred hHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHH
Confidence 99888899999999999999874322222 22233333 27899999999999754311 000 11111
Q ss_pred HHhhhcccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1064 LFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.. ....+ +++++||++|. |++++++.+.+.+.
T Consensus 176 ~~-------~~~~~~~~~~~SA~~g~----------gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 176 MA-------RSVGAVAYLECSARLHD----------NVHAVFQEAAEVAL 208 (214)
T ss_dssp HH-------HHTTCSEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HH-------HhcCCCEEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 11 11233 79999999998 99999999988764
No 332
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.48 E-value=4.7e-14 Score=154.30 Aligned_cols=162 Identities=17% Similarity=0.069 Sum_probs=104.1
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.....+|+++|++|+|||||+++|+...-... ..+++.......+.+++ +.+.||||||+.
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE-----------------YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEETTEEEEEEEEECCCST
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------CCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 34567999999999999999999986421100 00111111123344555 567899999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChh-----------hhHHHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPE-----------WVVDAT 1061 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~-----------~v~~~~ 1061 (1527)
+|......++..+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+...... ...++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 9988777888999999999999874322222 223333332 8899999999998653110 001111
Q ss_pred HHHHhhhcccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1062 FDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1062 ~~~~~~l~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
...... ..+ +++++||++|. |++++++.+.+.+..+
T Consensus 160 ~~~~~~-------~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 160 KLLAEE-------IKAASYIECSALTQK----------NLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHHHH-------HTCSEEEECCTTTCT----------THHHHHHHHHHHHHHH
T ss_pred HHHHHh-------cCCcEEEEEecCCCC----------CHHHHHHHHHHHHhcc
Confidence 111111 123 79999999998 9999999998876543
No 333
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.48 E-value=2.7e-13 Score=149.35 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=103.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh----------hHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE----------AFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e----------~f~~~~~ 134 (1527)
.+..+|+++|++|+|||||+++|.+..+ ...+.+|+|....... +++ .+.+|||||+. .|.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~--~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE--VAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE--EET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE--ecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4567899999999999999999988763 2344556665544333 333 68899999973 3444333
Q ss_pred hhc---cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH-HHHHhhhcccccccCCCCcEEE
Q psy1758 135 RGA---KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI-KQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 135 ~~~---~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~-~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.++ ..+|++++|+|++++......+....+...++|++++.||+|+.+...... ....... ........++++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~ 177 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREA---VLAFNGDVQVET 177 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHH---HGGGCSCEEEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHH---HHhcCCCCceEE
Confidence 333 578999999999987766555555666678999999999999876322111 1111111 112222357899
Q ss_pred eeccCCCChhHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~ 229 (1527)
+||+++.|++++++.|...
T Consensus 178 ~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHH
T ss_pred EeecCCCCHHHHHHHHHHH
Confidence 9999999999999999754
No 334
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.47 E-value=1.3e-13 Score=164.83 Aligned_cols=167 Identities=22% Similarity=0.191 Sum_probs=108.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF-- 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df-- 998 (1527)
.++.|+|+|++|+|||||+++|++... ..+...+.|++.....+.+++..+.++||||+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~----------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp 241 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ----------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc----------------cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCC
Confidence 456799999999999999999985411 12234577888888889999999999999997431
Q ss_pred ---hH---HHHHHHHhcCEEEEEEeCCCCC--C-hhHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHh
Q psy1758 999 ---GG---EVERILSMVDNVLLLIDAVEGP--M-PQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFD 1066 (1527)
Q Consensus 999 ---~~---ev~~~l~~aD~ailVVDa~~G~--~-~qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~ 1066 (1527)
.. .+...+..+|.+++|+|++++. . .+...+...+.. .+.|+|+|.||+|+.+.......+.+.....
T Consensus 242 ~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~ 321 (364)
T 2qtf_A 242 PQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSK 321 (364)
T ss_dssp GGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHH
Confidence 11 1223467899999999998754 2 222222333333 4689999999999976542222222222112
Q ss_pred hhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC
Q psy1758 1067 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN 1117 (1527)
Q Consensus 1067 ~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~ 1117 (1527)
.+.. ...+++++||++|. |++.|++.|.+.++.|.+.
T Consensus 322 ~l~~----~~~~~~~~SA~~g~----------gi~~L~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 322 ELYS----PIFDVIPISALKRT----------NLELLRDKIYQLATQLSLE 358 (364)
T ss_dssp HHCS----CEEEEEECBTTTTB----------SHHHHHHHHHHHHHHHC--
T ss_pred HhcC----CCCcEEEEECCCCc----------CHHHHHHHHHHHhcccCCC
Confidence 2211 12357999999998 9999999999888766544
No 335
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.47 E-value=3.8e-14 Score=157.32 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=107.1
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
.....+|+++|.+|+|||||+++|+...-..... ...|.+. .....+....+.++||||||+.+|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 88 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYV--------------PTVFENY-TACLETEEQRVELSLWDTSGSPYY 88 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCC--------------CCSEEEE-EEEEEC--CEEEEEEEEECCSGGG
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcC--------------CeeeeeE-EEEEEECCEEEEEEEEECCCCHhH
Confidence 3456799999999999999999998653211100 1112222 122233444578999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH--HHHHHHHHHc--CCccEEEEeccCCCCCCh-----------hhhHHHHHH
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNARP-----------EWVVDATFD 1063 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt--~~~~~~~~~~--glp~IvviNKiD~~~a~~-----------~~v~~~~~~ 1063 (1527)
......+++.+|++|+|+|+++...... ..++..+... ++|+++|.||+|+.+... ....++...
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 8888888999999999999987533222 2333444443 789999999999865210 001111222
Q ss_pred HHhhhcccccccCC-cEEEeccccCCcCCCcccccCC-ChhHHHHHHhhcCCC
Q psy1758 1064 LFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGN-MIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~g-i~~Ll~~i~~~lp~p 1114 (1527)
... ...+ +++.+||++|. | ++.+++.+.+.+..+
T Consensus 169 ~~~-------~~~~~~~~e~SA~~g~----------g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 169 IAK-------QLGAEIYLEGSAFTSE----------KSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HHH-------HHTCSEEEECCTTTCH----------HHHHHHHHHHHHHHHC-
T ss_pred HHH-------HcCCCEEEEeccCCCc----------ccHHHHHHHHHHHHhcc
Confidence 111 1234 79999999998 8 999999998876443
No 336
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.47 E-value=1.1e-13 Score=162.41 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=109.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCCc--
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADF-- 998 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~df-- 998 (1527)
..+|+++|.+|+|||||+++|+..... ......|.|+......+.+ +++.++||||||+.+|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~---------------~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSA---------------FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCT---------------GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC---------------ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh
Confidence 368999999999999999999865211 1123456777777777775 6789999999999988
Q ss_pred ---hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH-HHHH-----cCCccEEEEeccCCCCCChhh-----hHHHHHHH
Q psy1758 999 ---GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR-KALK-----LGFKPIVVVNKIDRSNARPEW-----VVDATFDL 1064 (1527)
Q Consensus 999 ---~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~-~~~~-----~glp~IvviNKiD~~~a~~~~-----v~~~~~~~ 1064 (1527)
.......++.+|++|+|+|+++....+....|. .+.. .++|+++|+||+|+...+... ..+++.+.
T Consensus 68 ~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~ 147 (307)
T 3r7w_A 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSET 147 (307)
T ss_dssp HHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHH
Confidence 455667788999999999999865444433332 2222 289999999999997632211 11222222
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...++. ..+|++.+||+++ ++.+++..++..+
T Consensus 148 ~~~~g~----~~~~~~~tSa~~~-----------~i~e~~~~iv~~l 179 (307)
T 3r7w_A 148 SSEFGF----PNLIGFPTSIWDE-----------SLYKAWSQIVCSL 179 (307)
T ss_dssp HHTTTC----CSCEEEECCTTSS-----------HHHHHHHHHHHTT
T ss_pred HHHcCC----CCeEEEEeeecCC-----------hHHHHHHHHHHHH
Confidence 222211 0368999999994 6777777776654
No 337
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.47 E-value=2.3e-14 Score=169.81 Aligned_cols=156 Identities=18% Similarity=0.228 Sum_probs=112.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCCC---
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD--- 997 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~d--- 997 (1527)
+.+|+++|.+|+|||||+++|+.....+. ...++|+.+....+.+.+ ..+.||||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~----------------~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~ 221 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIA----------------DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 221 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEES----------------STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTT
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccc----------------cCCccccCceEEEEEeCCCceEEEecCCCCccccc
Confidence 56899999999999999999976532221 223456666666777775 8999999999533
Q ss_pred ----chHHHHHHHHhcCEEEEEEeCCC----CCChhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHH
Q psy1758 998 ----FGGEVERILSMVDNVLLLIDAVE----GPMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDL 1064 (1527)
Q Consensus 998 ----f~~ev~~~l~~aD~ailVVDa~~----G~~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~ 1064 (1527)
+.....+.+..+|++|+|+|++. .+..+...++..+.. .++|+++|+||+|+... .+..+++.+.
T Consensus 222 ~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~~~~l~~~ 299 (342)
T 1lnz_A 222 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFKEK 299 (342)
T ss_dssp CTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHHHHHHHHH
Confidence 55666677788999999999975 222333444455554 37899999999999753 2223333332
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+ .. .++++++||+++. |+++|++.|.+.+..
T Consensus 300 l---~~-----~~~v~~iSA~tg~----------gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 300 L---TD-----DYPVFPISAVTRE----------GLRELLFEVANQLEN 330 (342)
T ss_dssp C---CS-----CCCBCCCSSCCSS----------TTHHHHHHHHHHHTS
T ss_pred h---hc-----CCCEEEEECCCCc----------CHHHHHHHHHHHHhh
Confidence 2 11 1578999999998 999999999988854
No 338
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.47 E-value=1.5e-13 Score=148.68 Aligned_cols=153 Identities=20% Similarity=0.161 Sum_probs=101.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
.+..+|+++|.+|+|||||+++|+...-... .. .. +... ...+.+++ +.++||||||+.+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~~-------------~t-~~~~---~~~~~~~~~~~~l~i~Dt~G~~~ 79 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQE-ES-------------PE-GGRF---KKEIVVDGQSYLLLIRDEGGPPE 79 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-CC-------------TT-CEEE---EEEEEETTEEEEEEEEECSSSCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cC-------------CC-cceE---EEEEEECCEEEEEEEEECCCChh
Confidence 4457899999999999999999986421100 00 00 1111 13344555 5678899999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhh-hHHHHHHHHhhhccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEW-VVDATFDLFDKLCAT 1071 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~-v~~~~~~~~~~l~~~ 1071 (1527)
|. +++.+|++++|+|+++....+. ..++..+.. .++|+++|.||+|+....... ..++.......++
T Consensus 80 ~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-- 152 (184)
T 3ihw_A 80 LQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK-- 152 (184)
T ss_dssp HH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT--
T ss_pred hh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC--
Confidence 87 7788999999999997543333 333344443 368999999999984321111 1222232222221
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.++++.+||++|. |++++++.+.+.+
T Consensus 153 ----~~~~~e~Sa~~~~----------gv~~lf~~l~~~i 178 (184)
T 3ihw_A 153 ----RCTYYETCATYGL----------NVERVFQDVAQKV 178 (184)
T ss_dssp ----TCEEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred ----CCeEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 2578999999998 9999999998764
No 339
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=1.8e-13 Score=149.25 Aligned_cols=159 Identities=20% Similarity=0.214 Sum_probs=103.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+......... ...+.+. .....+....+.+.||||||+.+ .
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~ 89 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD--------------PTLESTY-RHQATIDDEVVSMEILDTAGQED-T 89 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC--------------TTCCEEE-EEEEEETTEEEEEEEEECCCCCC-C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccC--------------CCCCceE-EEEEEECCEEEEEEEEECCCCCc-c
Confidence 455799999999999999999998652211100 1111111 11122222346799999999998 7
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
......++.+|++++|+|+++... .....++..+.. .++|+++|+||+|+...+.. ..++.......
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~~------- 161 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQV-STEEGEKLATE------- 161 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCS-CHHHHHHHHHH-------
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccccccc-CHHHHHHHHHH-------
Confidence 777888999999999999987321 122223333332 48899999999998653211 11222222111
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++++||++|. .|++++++.|.+.+
T Consensus 162 ~~~~~~~~Sa~~g~---------~gi~~l~~~l~~~i 189 (196)
T 2atv_A 162 LACAFYECSACTGE---------GNITEIFYELCREV 189 (196)
T ss_dssp HTSEEEECCTTTCT---------TCHHHHHHHHHHHH
T ss_pred hCCeEEEECCCcCC---------cCHHHHHHHHHHHH
Confidence 24689999999985 17889999988765
No 340
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.46 E-value=1e-13 Score=152.03 Aligned_cols=162 Identities=16% Similarity=0.075 Sum_probs=104.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
...+|+++|++|+|||||+++|+........... .+.+.. ..+.+++ +.+.||||||+.+|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t--------------~~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT--------------VFENYI---ADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCS--------------SCCCCE---EEEEETTEEEEEEEECCCCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCc--------------ccceEE---EEEEECCEEEEEEEEECCCchhH
Confidence 4568999999999999999999865321110000 111111 1233333 58999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH--HHHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHh------hh
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFD------KL 1068 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt--~~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~------~l 1068 (1527)
......+++.+|++++|+|+++....+. ..++..+... ++|+++|+||+|+..... ..+.+..... +.
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~ 164 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH--TRRELAKMKQEPVRSEEG 164 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH--HHHHHHTTTCCCCCHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc--chhhhcccccCcCCHHHH
Confidence 8888888899999999999987322221 2333444444 899999999999976421 1111110000 00
Q ss_pred cccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1069 CATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1069 ~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
........+ +++++||++|. |++++++.|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~SA~~g~----------gi~~l~~~i~~~~ 198 (201)
T 2gco_A 165 RDMANRISAFGYLECSAKTKE----------GVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHTTCSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 000011233 78999999998 9999999987754
No 341
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.45 E-value=2.3e-13 Score=145.49 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=97.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|.+|+|||||+++|+...-. .. ....|.+. ...+.+++ ..++||||||+.+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~--~~-------------~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~-- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQ--VL-------------EKTESEQY---KKEMLVDGQTHLVLIREEAGAPD-- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCC--CC-------------SSCSSSEE---EEEEEETTEEEEEEEEECSSSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC--Cc-------------CCCcceeE---EEEEEECCEEEEEEEEECCCCch--
Confidence 468999999999999999999865211 10 01112111 12233333 5789999999987
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH------cCCccEEEEeccCCCCCChh-hhHHHHHHHHhhhccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK------LGFKPIVVVNKIDRSNARPE-WVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~------~glp~IvviNKiD~~~a~~~-~v~~~~~~~~~~l~~~ 1071 (1527)
..+++.+|++|+|+|+++....+....| ..+.. .++|+++|.||+|+...... -..++.........
T Consensus 67 ---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-- 141 (178)
T 2iwr_A 67 ---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK-- 141 (178)
T ss_dssp ---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS--
T ss_pred ---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc--
Confidence 4577889999999999874322222222 12222 37899999999998421111 11222222222111
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++.+||++|. |++++++.+.+.+
T Consensus 142 ----~~~~~~~Sa~~~~----------~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 142 ----RCSYYETXATYGL----------NVDRVFQEVAQKV 167 (178)
T ss_dssp ----SEEEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred ----CCeEEEEeccccC----------CHHHHHHHHHHHH
Confidence 3579999999998 9999999998765
No 342
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.44 E-value=1.6e-13 Score=172.11 Aligned_cols=159 Identities=12% Similarity=0.096 Sum_probs=115.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+|+|.+|+|||||+++|+..... . ...|+......+.++++.++||||||+.+|.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~-----------------~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV--T-----------------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 380 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC--C-----------------CCCCSSEEEEEEESSSCEEEEEEECCCGGGS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC--C-----------------cCCccceeEEEEEeCCEEEEEEECCCcHHHH
Confidence 34578999999999999999999865311 0 0114444456688899999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.....+++.+|++|+|+|+++....+. ...+..... .++|+|+|+||+|+.+... .+++...+... ....
T Consensus 381 ~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---~~~~~~~~~~~--~~~~ 455 (497)
T 3lvq_E 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKLGLT--RIRD 455 (497)
T ss_dssp GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC---HHHHHHHTTCT--TCCS
T ss_pred HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC---HHHHHHHhchh--hhhc
Confidence 988889999999999999997533222 223333332 4799999999999976532 22333322111 1112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..++++++||++|. |+++++++|.+.+.
T Consensus 456 ~~~~~~~~SA~~g~----------gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 456 RNWYVQPSCATSGD----------GLYEGLTWLTSNYK 483 (497)
T ss_dssp SCEEEEECBTTTTB----------THHHHHHHHHHHCC
T ss_pred CCeEEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 35689999999998 99999999998874
No 343
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.44 E-value=2.7e-13 Score=150.74 Aligned_cols=161 Identities=23% Similarity=0.270 Sum_probs=105.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|..++|||||+++++... +.. .....-|.....+...+....++++||||||+.+|..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~--f~~------------~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~ 77 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDS--FDN------------TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS 77 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC--CC----------------------CEEEEEECSSCEEEEEEECCSCTTTCGG
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCC--CCC------------CcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh
Confidence 34589999999999999999998542 110 0011122222222222333346889999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....+++.+|++++|+|.+.... ......|..+.. .++|+++|.||+|+.+.+.- ..++......+ ..
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V-~~~e~~~~a~~-------~~ 149 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV-SIEEGERKAKE-------LN 149 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCS-CHHHHHHHHHH-------HT
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcc-cHHHHhhHHHH-------hC
Confidence 99999999999999999986322 222334444433 46889999999998654311 11222222111 24
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
++++.+||++|. |++++|+.|++.++.
T Consensus 150 ~~~~e~SAktg~----------nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 150 VMFIETSAKAGY----------NVKQLFRRVAAALPG 176 (216)
T ss_dssp CEEEEEBTTTTB----------SHHHHHHHHHHHC--
T ss_pred CeeEEEeCCCCc----------CHHHHHHHHHHHHHh
Confidence 578999999998 999999999988864
No 344
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.17 E-value=8.2e-15 Score=161.00 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=103.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+...-.-...+ +. +.+. .....+....+.++||||||+.+|.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 92 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP----TV----------FDNY-SANVMVDGKPVNLGLWDTAGQEDYD 92 (204)
Confidence 3456899999999999999999975421100000 00 0000 1111222334677899999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHH------Hhhhc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDL------FDKLC 1069 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~------~~~l~ 1069 (1527)
.....+++.+|++++|+|++++...+.. .++..+... ++|+++|+||+|+...+. ..+.+.+. .....
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~ 170 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGL 170 (204)
Confidence 9888899999999999999876433332 233333333 789999999999965421 11111000 00011
Q ss_pred ccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1070 ATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1070 ~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
.......+ |++++||++|. |++++++.|.+.
T Consensus 171 ~~~~~~~~~~~~~vSA~~g~----------gi~~l~~~l~~~ 202 (204)
T 3th5_A 171 AMAKEIGAVKYLECSALTQR----------GLKTVFDEAIRA 202 (204)
Confidence 11122334 78999999998 999999988754
No 345
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=148.06 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=100.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|.+|+|||||+++|+...-..... ...|.+. .....+....+.+.||||||+.+|.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYD--------------PNLEDTY-SSEETVDHQPVHLRVMDTADLDTPR 83 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCC--------------TTCCEEE-EEEEEETTEEEEEEEEECCC---CC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccC--------------CCcccee-eEEEEECCEEEEEEEEECCCCCcch
Confidence 345789999999999999999998653110000 1112222 1112233344688999999999887
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
. +.++++.+|++++|+|+++....+ ...++..+.. .++|+++|+||+|+.+.+.. ..++.......
T Consensus 84 ~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~----- 156 (187)
T 3c5c_A 84 N-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQV-TKAEGVALAGR----- 156 (187)
T ss_dssp C-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS-CHHHHHHHHHH-----
T ss_pred h-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc-CHHHHHHHHHH-----
Confidence 6 467889999999999998632222 2223333333 48999999999998643211 11222222222
Q ss_pred cccCCcEEEecc-ccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1073 EQLDFPVIYTSA-LHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1073 ~~~~~pvi~~SA-~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..++++.+|| ++|. |++++++.+.+.+
T Consensus 157 --~~~~~~e~Sa~~~g~----------gv~~lf~~l~~~i 184 (187)
T 3c5c_A 157 --FGCLFFEVSACLDFE----------HVQHVFHEAVREA 184 (187)
T ss_dssp --HTCEEEECCSSSCSH----------HHHHHHHHHHHHH
T ss_pred --cCCcEEEEeecCccc----------cHHHHHHHHHHHH
Confidence 2357999999 8998 9999999998765
No 346
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.44 E-value=6.4e-14 Score=151.19 Aligned_cols=161 Identities=14% Similarity=0.072 Sum_probs=101.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+......... ...+.+. .....+....+.+.||||||+.+|.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV--------------PTVFENY-TASFEIDTQRIELSLWDTSGSPYYD 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC--------------CCSEEEE-EEEEECSSCEEEEEEEEECCSGGGT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------------CccceeE-EEEEEECCEEEEEEEEECCCChhhh
Confidence 345789999999999999999998652110000 0011111 1111222234689999999999998
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHH-HHH-HHHHH--cCCccEEEEeccCCCCCChh-----------hhHHHHHHH
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTR-FVT-RKALK--LGFKPIVVVNKIDRSNARPE-----------WVVDATFDL 1064 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~-~~~~~--~glp~IvviNKiD~~~a~~~-----------~v~~~~~~~ 1064 (1527)
.....+++.+|++|+|+|+++....+.. ..| ..+.. .+.|+++|.||+|+.+.... -..++....
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 8777788999999999999874322221 223 33333 37899999999998642100 001112221
Q ss_pred HhhhcccccccCCcEEEeccc-cCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1065 FDKLCATEEQLDFPVIYTSAL-HGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~-~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...++ ..|++.+||+ +|. |++++++.+.+.+
T Consensus 150 ~~~~~------~~~~~e~Sa~~~~~----------gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 150 AKQIG------AATYIECSALQSEN----------SVRDIFHVATLAC 181 (184)
T ss_dssp HHHHT------CSEEEECBTTTBHH----------HHHHHHHHHHHHH
T ss_pred HHHcC------CcEEEEeeecCCCc----------CHHHHHHHHHHHH
Confidence 11111 2479999999 677 8999999987754
No 347
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.43 E-value=3.8e-13 Score=158.22 Aligned_cols=159 Identities=20% Similarity=0.223 Sum_probs=102.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccc------cCCceeEEEE---------------------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFS------EAGGITQHIG--------------------------------- 107 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~------~~~giT~~~~--------------------------------- 107 (1527)
...|+|+|+|++|+|||||+|+|.+..+... ..++.++...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4568999999999999999999998875211 1221111111
Q ss_pred --------------------EEE-EEeCCeEEEEEeCCChhh-------------HHHHHHhhccccCEEEEEEeC-CCC
Q psy1758 108 --------------------AYN-VVTNHGSITFLDTPGHEA-------------FTAMRARGAKVTDIVVLVVAA-DDG 152 (1527)
Q Consensus 108 --------------------~~~-~~~~~~~i~~iDTPG~e~-------------f~~~~~~~~~~aD~~IlVvda-~~g 152 (1527)
... ....+..++||||||+.. +..+...++..+|++++|+|+ +.+
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 000 112345799999999643 667777889999999999997 445
Q ss_pred CcHHH-HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccccccc-CCCCcEEEeeccC---CCChhHHHHHHH
Q psy1758 153 VMPQT-REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEY-GGASPFISISAKT---GVGINKLLENIS 227 (1527)
Q Consensus 153 ~~~qt-~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~iSAkt---g~gI~eL~~~l~ 227 (1527)
...+. ...+..+...+.|+++|+||+|+...... ....+. .... .+ .+..+++.+||.+ +.|+.++++.+.
T Consensus 182 ~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~-~~~~~~-~~~~--~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 182 LANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD-AMEVLT-GRVI--PLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp STTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC-CHHHHT-TSSS--CCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH-HHHHHh-CCCc--cCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 54333 46666777778999999999999764321 122221 1111 11 1223455556666 789999999886
Q ss_pred HH
Q psy1758 228 LQ 229 (1527)
Q Consensus 228 ~~ 229 (1527)
..
T Consensus 258 ~~ 259 (315)
T 1jwy_B 258 LY 259 (315)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 348
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.39 E-value=1.8e-13 Score=150.98 Aligned_cols=158 Identities=15% Similarity=0.073 Sum_probs=101.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe--cCeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--NGTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~--~~~~iniiDTPGh~df 998 (1527)
...+|+++|.+|+|||||+++|+......... ...+.+. ...+.+ ..+.+.||||||+.+|
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--------------~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~ 89 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYV--------------PTVFENY---TASFEIDTQRIELSLWDTSGSPYY 89 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC--------------CCSEEEE---EEEEESSSSEEEEEEEEECCSGGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--------------CccceeE---EEEEEECCEEEEEEEEeCCCcHhh
Confidence 45789999999999999999998652210000 0111111 112233 3468999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHH-HHHHH--cCCccEEEEeccCCCCCChh----------h-hHHHHHH
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTR-FVT-RKALK--LGFKPIVVVNKIDRSNARPE----------W-VVDATFD 1063 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~-~~~~~--~glp~IvviNKiD~~~a~~~----------~-v~~~~~~ 1063 (1527)
......+++.+|++|+|+|+++....+.. ..| ..+.. .+.|+++|.||+|+...... . ..++...
T Consensus 90 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 88777788999999999999874222221 222 33333 37899999999998642100 0 0111222
Q ss_pred HHhhhcccccccCCcEEEeccc-cCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSAL-HGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~-~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
....++ .++++++||+ +|. |++++++.+.+.+
T Consensus 170 ~~~~~~------~~~~~e~SAk~~~~----------gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 170 MAKQIG------AATYIECSALQSEN----------SVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHT------CSEEEECCTTTCHH----------HHHHHHHHHHHHH
T ss_pred HHHHcC------CCEEEEeeeccCCc----------CHHHHHHHHHHHH
Confidence 111111 2478999999 677 8999999987653
No 349
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=3.8e-13 Score=161.13 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=98.8
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe--EEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT--RINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~--~iniiDTPGh~df~ 999 (1527)
..+|+++|++|+|||||+++|+.. +.+.. ..++....+..+++++......+.+.+. .+++|||||+.|+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~-~~~~~------~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~ 109 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLT-DLYPE------RVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAI 109 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTC-CC---------------------CEEEEEEEEC----CEEEEEEEEC--------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCC-CCCCC------CcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccC
Confidence 358999999999999999999754 11111 1111122223344555444444555554 78999999995543
Q ss_pred H-------HHH-------HHHHhc-------------CEEEEEEeC-CCCCChhHHHHHHHHHHcCCccEEEEeccCCCC
Q psy1758 1000 G-------EVE-------RILSMV-------------DNVLLLIDA-VEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 1051 (1527)
Q Consensus 1000 ~-------ev~-------~~l~~a-------------D~ailVVDa-~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~ 1051 (1527)
. .+. .+++.+ |+++++|++ .++..+....++..+ ..++|+|+|+||+|+..
T Consensus 110 ~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 110 NCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp ------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCC
Confidence 3 222 444443 468888887 445544444444433 46799999999999875
Q ss_pred CChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeec
Q psy1758 1052 ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY 1131 (1527)
Q Consensus 1052 a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~ 1131 (1527)
.+ ++ ..+.+.... .....++|++++||++|.. ...+..+++.|.+.+|.+....+.++.+
T Consensus 189 ~~--ev-~~~k~~i~~---~~~~~~i~~~~~Sa~~~~~-------~e~~~~l~~~i~~~ip~~vv~s~~~~~~------- 248 (361)
T 2qag_A 189 LK--ER-ERLKKRILD---EIEEHNIKIYHLPDAESDE-------DEDFKEQTRLLKASIPFSVVGSNQLIEA------- 248 (361)
T ss_dssp HH--HH-HHHHHHHHH---HTTCC-CCSCCCC----------------CHHHHHHHHHTCSCEECCCSEEC---------
T ss_pred HH--HH-HHHHHHHHH---HHHHCCCCEEeCCCcCCCc-------chhHHHHHHHHHhcCCCCEeCCCCcccc-------
Confidence 32 22 221111111 1223457899999999972 1256788888988888765544443321
Q ss_pred cccCceEEEEEeec-CccccC
Q psy1758 1132 SSYLGKIGIGRILS-GRIKSL 1151 (1527)
Q Consensus 1132 d~~~G~v~~grV~s-G~lk~G 1151 (1527)
.|+.+.||.|. |.+.+-
T Consensus 249 ---~g~~~~gr~ypwg~~~ve 266 (361)
T 2qag_A 249 ---KGKKVRGRLYPWGVVEVE 266 (361)
T ss_dssp -------CEEECCSSCCEESS
T ss_pred ---CCeEEEEEecCCceEecC
Confidence 47777788775 665543
No 350
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.38 E-value=3.9e-13 Score=158.19 Aligned_cols=119 Identities=10% Similarity=0.086 Sum_probs=78.2
Q ss_pred cCeEEEEEeCCCCCC-------------chHHHHHHHHhcCEEEEEEeC-CCCCChhH-HHHHHHHHHcCCccEEEEecc
Q psy1758 983 NGTRINIIDTPGHAD-------------FGGEVERILSMVDNVLLLIDA-VEGPMPQT-RFVTRKALKLGFKPIVVVNKI 1047 (1527)
Q Consensus 983 ~~~~iniiDTPGh~d-------------f~~ev~~~l~~aD~ailVVDa-~~G~~~qt-~~~~~~~~~~glp~IvviNKi 1047 (1527)
.+..++||||||+.+ |...+..++..+|++++|+|+ ..+...+. ..++..+...+.|.++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999864 556677789999999999997 55655444 367777777899999999999
Q ss_pred CCCCCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1048 DRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1048 D~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
|+...+. ...+.+.. .......+++++|+.++.... ...|+.++++.+.+++|.
T Consensus 209 Dl~~~~~-~~~~~~~~-------~~~~~~~~~~~v~~~sa~~~~----~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDKGT-DAMEVLTG-------RVIPLTLGFIGVINRSQEDII----AKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCSSC-CCHHHHTT-------SSSCCTTCEEECCCCCHHHHS----SSCCHHHHHHHHHHHHHT
T ss_pred ccCCcch-HHHHHHhC-------CCccCCCCeEEEecCChhhhc----cCCCHHHHHHHHHHHHhC
Confidence 9975432 12222221 001112334455554432100 012889999999998875
No 351
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.38 E-value=2.9e-12 Score=165.84 Aligned_cols=164 Identities=16% Similarity=0.179 Sum_probs=110.1
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCce--------------eEEE------------------------
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGI--------------TQHI------------------------ 106 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~gi--------------T~~~------------------------ 106 (1527)
..++++|+|+|++|+|||||+|+|.+..+ ..+..+++ |++.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 45678999999999999999999998875 44444444 3322
Q ss_pred ---------------EEEEEEeCC----eEEEEEeCCChhh---HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHH-H
Q psy1758 107 ---------------GAYNVVTNH----GSITFLDTPGHEA---FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIA-H 163 (1527)
Q Consensus 107 ---------------~~~~~~~~~----~~i~~iDTPG~e~---f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~-~ 163 (1527)
....+.++. ..++||||||... .......++..+|++|+|+|++++......+.|. .
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 001111111 3589999999765 3455667788999999999999988777776664 4
Q ss_pred HHHcCCCEEEEEEcccCCcch---hH----------HHHHHHhhhcccccc---c-CCCCcEEEeecc------------
Q psy1758 164 AKISGVPLIVAINKIDKLDIN---LD----------RIKQDLISEQVIPEE---Y-GGASPFISISAK------------ 214 (1527)
Q Consensus 164 ~~~~~vpiIvviNKiDl~~~~---~~----------~~~~~l~~~~~~~~~---~-~~~~~v~~iSAk------------ 214 (1527)
+...+.|+++|+||+|+.... .+ .+...+......... + ....+++++||+
T Consensus 226 l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~ 305 (695)
T 2j69_A 226 IKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQA 305 (695)
T ss_dssp TTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTC
T ss_pred HHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchh
Confidence 455688999999999986532 11 011111110000000 0 112479999999
Q ss_pred --CCCChhHHHHHHHHH
Q psy1758 215 --TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 --tg~gI~eL~~~l~~~ 229 (1527)
+|.|+++|++.|...
T Consensus 306 ~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 306 DLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp CCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHH
Confidence 999999999998643
No 352
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.38 E-value=8.6e-13 Score=157.89 Aligned_cols=160 Identities=18% Similarity=0.250 Sum_probs=105.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc------cccCCceeEEEE---------------------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV------FSEAGGITQHIG--------------------------------- 107 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~------~~~~~giT~~~~--------------------------------- 107 (1527)
...|+|+++|++|+|||||+|+|.+..+. .+..|+.++...
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999987763 223344222111
Q ss_pred ------------EEEEEeC-CeEEEEEeCCCh-------------hhHHHHHHhhcccc-CEEEEEEeCCCCCcHHHH-H
Q psy1758 108 ------------AYNVVTN-HGSITFLDTPGH-------------EAFTAMRARGAKVT-DIVVLVVAADDGVMPQTR-E 159 (1527)
Q Consensus 108 ------------~~~~~~~-~~~i~~iDTPG~-------------e~f~~~~~~~~~~a-D~~IlVvda~~g~~~qt~-e 159 (1527)
...+... ...++||||||. +.+..+...++..+ +++++|+|++.+...+.. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0111122 457999999994 25677777777655 455667777776655443 4
Q ss_pred HHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 160 ~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
.+..+...+.|+++|+||+|+.+.... ....+ ........ .+..+++++||++|.|++++++.+...
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~-~~~~~~l~-~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVL-ENKLLPLR-RGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHH-TTCSSCCT-TCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHhCcCCCceEEEeccccccCcchh-HHHHH-hCCccccc-CCceEEEeCCcccccccccHHHHHHHH
Confidence 666666678999999999999753221 11111 11111111 123578899999999999999999753
No 353
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.37 E-value=8.4e-13 Score=151.32 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=84.9
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|++|+|||||+++|++..... .....++|.......+.+++..++||||||+.+|..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~ 99 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR---------------VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY 99 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC---------------CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc---------------cCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc
Confidence 35789999999999999999999753211 122356677777888899999999999999998865
Q ss_pred HHHHHHH---------hcCEEEEEEeCCCC-CChhHHHHHHHHHHc-C----CccEEEEeccCCCC
Q psy1758 1001 EVERILS---------MVDNVLLLIDAVEG-PMPQTRFVTRKALKL-G----FKPIVVVNKIDRSN 1051 (1527)
Q Consensus 1001 ev~~~l~---------~aD~ailVVDa~~G-~~~qt~~~~~~~~~~-g----lp~IvviNKiD~~~ 1051 (1527)
....+++ .+|++++|+|.... .......++..+.+. + .|+++|+||+|+..
T Consensus 100 ~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 100 VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred chHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 4444332 78999999887653 334444555555543 3 38899999999853
No 354
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.36 E-value=8.9e-13 Score=153.74 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=107.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCc------cccccc-cc----------------ceecchhh----hh----c--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGT------FRKNQN-IN----------------ARIMDSNE----IE----K-- 967 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~------~~~~~~-~~----------------~~~~D~~~----~E----~-- 967 (1527)
...+|+++|.+|+|||||+++|++.... ...... +. ..+.+... .+ +
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999976421 111110 00 00011110 10 0
Q ss_pred --ccceeEeeeeEEEEec-CeEEEEEeCCCCCC-------------chHHHHHHHHhcCEEE-EEEeCCCCCChhHH-HH
Q psy1758 968 --ERGITIFSKNCSIEYN-GTRINIIDTPGHAD-------------FGGEVERILSMVDNVL-LLIDAVEGPMPQTR-FV 1029 (1527)
Q Consensus 968 --erGiTi~~~~~~~~~~-~~~iniiDTPGh~d-------------f~~ev~~~l~~aD~ai-lVVDa~~G~~~qt~-~~ 1029 (1527)
..|++.......+... ...++||||||+.+ +...+..+++.+|.++ +|+|++.+...+.. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 1333332222223332 47899999999742 4455667788888777 69999988777764 45
Q ss_pred HHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC-CcEEEeccccCCcCCCcccccCCChhHHHHHH
Q psy1758 1030 TRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAIL 1108 (1527)
Q Consensus 1030 ~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~-~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~ 1108 (1527)
++.+...+.|.++|+||+|+.+.+.. ..+.+.. .+. ..... .|++++||++|. |++.|++.+.
T Consensus 185 ~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~---~~~--~~~~~~~~v~~~SA~~~~----------gi~~l~~~l~ 248 (299)
T 2aka_B 185 AKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLEN---KLL--PLRRGYIGVVNRSQKDID----------GKKDITAALA 248 (299)
T ss_dssp HHHHCTTCSSEEEEEECGGGSCTTCC-CHHHHTT---CSS--CCTTCEEECCCCCCBCTT----------SCBCHHHHHH
T ss_pred HHHhCCCCCeEEEEEEccccCCCCch-HHHHHhC---CcC--cCCCCcEEEECCChhhcc----------ccccHHHHHH
Confidence 66666678999999999999754321 1121111 010 00112 378899999998 8889999887
Q ss_pred hhc
Q psy1758 1109 KYV 1111 (1527)
Q Consensus 1109 ~~l 1111 (1527)
+..
T Consensus 249 ~~~ 251 (299)
T 2aka_B 249 AER 251 (299)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 355
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.36 E-value=7.9e-13 Score=151.56 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=86.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH-------Hhhc-
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR-------ARGA- 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~-------~~~~- 137 (1527)
.+.++|+++|++|+|||||+++|.+..+ .....+++|.......+.+++..++||||||+++|.... .+.+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 3568999999999999999999998875 456667788888888888999999999999987663222 2222
Q ss_pred -cccCEEEEEEeCCC-CCcHHHHHHHHHHHH---c--CCCEEEEEEcccCCc
Q psy1758 138 -KVTDIVVLVVAADD-GVMPQTREAIAHAKI---S--GVPLIVAINKIDKLD 182 (1527)
Q Consensus 138 -~~aD~~IlVvda~~-g~~~qt~e~i~~~~~---~--~vpiIvviNKiDl~~ 182 (1527)
..+|++++|+|++. .........+..+.. . ..|+++|+||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 37899999999876 333333344444332 2 248999999999853
No 356
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.36 E-value=1.5e-12 Score=156.01 Aligned_cols=156 Identities=21% Similarity=0.163 Sum_probs=106.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|++|+|||||+++|+...... ....+.|.......+.+++..+.+|||||+.++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 229 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEI----------------ASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEE----------------ECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc----------------CCCCCeeeceeEEEEEecCceEEEEeCCCccccch
Confidence 44689999999999999999997652111 11234555555566777889999999999876531
Q ss_pred --------HHHHH-HHhcCEEEEEEeCCCCC--ChhH-HHHHHHHHH-c-CCccEEEEeccCCCCCChhhhHHHHHHHHh
Q psy1758 1001 --------EVERI-LSMVDNVLLLIDAVEGP--MPQT-RFVTRKALK-L-GFKPIVVVNKIDRSNARPEWVVDATFDLFD 1066 (1527)
Q Consensus 1001 --------ev~~~-l~~aD~ailVVDa~~G~--~~qt-~~~~~~~~~-~-glp~IvviNKiD~~~a~~~~v~~~~~~~~~ 1066 (1527)
....+ ...+|++++|+|++.+. ..+. ..++..+.. . +.|+++|+||+|+.... . +++....+.
T Consensus 230 ~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~--~-~~~~~~~~~ 306 (357)
T 2e87_A 230 SERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEE--N-IKRLEKFVK 306 (357)
T ss_dssp TTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHH--H-HHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChH--H-HHHHHHHHH
Confidence 11112 24689999999987643 2222 333444333 3 89999999999986532 1 233332221
Q ss_pred hhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1067 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1067 ~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |+++|++++.+.+.
T Consensus 307 -------~~~~~~~~iSA~~g~----------gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 307 -------EKGLNPIKISALKGT----------GIDLVKEEIIKTLR 335 (357)
T ss_dssp -------HTTCCCEECBTTTTB----------THHHHHHHHHHHHH
T ss_pred -------hcCCCeEEEeCCCCc----------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999988764
No 357
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.35 E-value=8.1e-13 Score=149.21 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=97.9
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 996 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~ 996 (1527)
.+....++|+++|++|+|||||+++|++...... .....++|.......+.+++..++||||||+.
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~ 89 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHS--------------GTAAKSITKKCEKRSSSWKETELVVVDTPGIF 89 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEETTEEEEEEECCSCC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCcc--------------CCCCCceeeeEEEEEEEeCCceEEEEECCCcc
Confidence 3445678999999999999999999986522111 11223677777778888999999999999987
Q ss_pred Cch-------HHHHHHH----HhcCEEEEEEeCCCCCChhHHHHHHHHH-----HcCCccEEEEeccCCCCCC-hhhhHH
Q psy1758 997 DFG-------GEVERIL----SMVDNVLLLIDAVEGPMPQTRFVTRKAL-----KLGFKPIVVVNKIDRSNAR-PEWVVD 1059 (1527)
Q Consensus 997 df~-------~ev~~~l----~~aD~ailVVDa~~G~~~qt~~~~~~~~-----~~glp~IvviNKiD~~~a~-~~~v~~ 1059 (1527)
+.. .++.+.+ +.+|++|+|+|++.. .......+..+. ....|+++|+||+|+...+ .++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~ 168 (239)
T 3lxx_A 90 DTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLR 168 (239)
T ss_dssp -----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC----------
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHH
Confidence 642 3344443 346999999999753 333333333332 2346899999999986542 222221
Q ss_pred ----HHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1060 ----ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1060 ----~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.++++....+ ..+++.++..+.+ ....++.+|++.+.+.+.
T Consensus 169 ~~~~~l~~l~~~~~-------~~~~~~~~~~~~~-----~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 169 EAPEDIQDLMDIFG-------DRYCALNNKATGA-----EQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp --CHHHHHHHHHHS-------SSEEECCTTCCHH-----HHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHcC-------CEEEEEECCCCcc-----ccHHHHHHHHHHHHHHHH
Confidence 2333332222 2355555543310 001277889988877663
No 358
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.34 E-value=7.5e-13 Score=156.48 Aligned_cols=164 Identities=15% Similarity=0.117 Sum_probs=105.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|.+|+|||||+++|+...-.-. ..+++.......+..++ +.++||||||+.+|.
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 217 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD 217 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCS-----------------CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcc-----------------cCCcccceeEEEEEECCEEEEEEEEeCCCchhhh
Confidence 46899999999999999999986421111 01112222223344444 456699999999998
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHH------hhhc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLF------DKLC 1069 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~------~~l~ 1069 (1527)
.....+++.+|++++|+|++++...+.. .++..+... ++|+++|+||+|+..... ..+.+.+.. ....
T Consensus 218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~ 295 (332)
T 2wkq_A 218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGL 295 (332)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHH--HHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccc--hhhhccccccccccHHHHH
Confidence 8888889999999999999875333322 222344443 899999999999865321 111111100 0000
Q ss_pred ccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1070 ATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1070 ~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.......+ |++++||++|. |++++++.+.+.+..|
T Consensus 296 ~~~~~~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 296 AMAKEIGAVKYLECSALTQR----------GLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HHHHHTTCSEEEECCTTTCT----------THHHHHHHHHHHHHC-
T ss_pred HHHHHcCCcEEEEecCCCCc----------CHHHHHHHHHHHHhcC
Confidence 00011233 79999999998 9999999998877544
No 359
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.33 E-value=6.3e-13 Score=144.24 Aligned_cols=110 Identities=23% Similarity=0.299 Sum_probs=74.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccccc---ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccc----
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVF---SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKV---- 139 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~---~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~---- 139 (1527)
.+.++|+++|++|+|||||+++|.+..+.. +..++++.+ +.+..+.||||||++.|...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------CCCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ecCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence 567899999999999999999999877533 233333332 255689999999998886666666554
Q ss_pred cCEEEEEEeCC-CCCc-HHHHHHHHHH---H----HcCCCEEEEEEcccCCcc
Q psy1758 140 TDIVVLVVAAD-DGVM-PQTREAIAHA---K----ISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 140 aD~~IlVvda~-~g~~-~qt~e~i~~~---~----~~~vpiIvviNKiDl~~~ 183 (1527)
+|++++|+|++ +... .....++..+ . ..++|+++|+||+|+.+.
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999998 4211 1111222211 1 148999999999999763
No 360
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.32 E-value=3.4e-12 Score=140.45 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=105.1
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
.....+|+++|++|+|||||+++|++.... .......|.|.... .+.+++ .+.++||||+.++
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~--------------~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSL--------------ARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYA 85 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEE--EEEEET-TEEEEECCCCC--
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCcc--------------ccccCCCccceeeE--EEEecC-CEEEEECcCCccc
Confidence 345568999999999999999999754210 01122345555432 334444 6889999998642
Q ss_pred ----------hHHHHHHH---HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhh-hHHHHHHH
Q psy1758 999 ----------GGEVERIL---SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEW-VVDATFDL 1064 (1527)
Q Consensus 999 ----------~~ev~~~l---~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~-v~~~~~~~ 1064 (1527)
...+..++ ..+|++++++|+..+.......+...+...++|.+++.||+|+....... .++.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 86 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREA 165 (210)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHH
Confidence 22233333 46899999999998876666666667777899999999999986532111 13344433
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+.+. ...++++++||+++. |++.+++.|.+.++.
T Consensus 166 ~~~~-----~~~~~~~~~Sal~~~----------~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 166 VLAF-----NGDVQVETFSSLKKQ----------GVDKLRQKLDTWFSE 199 (210)
T ss_dssp HGGG-----CSCEEEEECBTTTTB----------SHHHHHHHHHHHHC-
T ss_pred HHhc-----CCCCceEEEeecCCC----------CHHHHHHHHHHHHhh
Confidence 3221 123568899999998 999999999887653
No 361
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.32 E-value=8.6e-13 Score=142.48 Aligned_cols=164 Identities=17% Similarity=0.180 Sum_probs=99.6
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEE---EecCeEEEEEeCCCCCCch
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI---EYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~---~~~~~~iniiDTPGh~df~ 999 (1527)
.+|+++|.+|+|||||+++|+.....+.. ......|+........+ ......+.+|||||+.+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~------------~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG------------MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFY 70 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------------------CSEEEEEEEC---------CEEEEEEECSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC------------CcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHH
Confidence 47999999999999999999864211110 00111222222211111 1145789999999998887
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCC--ChhHHHHHHHHHH--cCCccEEEEeccCCCCCChh-hhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGP--MPQTRFVTRKALK--LGFKPIVVVNKIDRSNARPE-WVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~--~~qt~~~~~~~~~--~glp~IvviNKiD~~~a~~~-~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.....+++.+|++++|+|.+++. .......+..+.. .+.|+++|.||+|+...+.. ....+.... +. ..
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~ 144 (184)
T 2zej_A 71 STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKE---LL---NK 144 (184)
T ss_dssp TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHH---TT---TC
T ss_pred HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHH---HH---Hh
Confidence 77777889999999999998752 1122233333333 37888999999999653211 011111111 11 12
Q ss_pred cCCc----EEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFP----VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~p----vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+| ++++||++|. .+++.|++.|.+.++.
T Consensus 145 ~~~~~~~~~~~~Sa~~~~---------~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 145 RGFPAIRDYHFVNATEES---------DALAKLRKTIINESLN 178 (184)
T ss_dssp TTSCEEEEEEECCTTSCC---------HHHHHHHHHHHHHHHC
T ss_pred cCCcchhheEEEecccCc---------hhHHHHHHHHHHHHhc
Confidence 3444 8999999993 1788999999887754
No 362
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.32 E-value=1.5e-12 Score=157.39 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=48.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEE---------------------eCC---eEEEEEeCCC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVV---------------------TNH---GSITFLDTPG 125 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~---------------------~~~---~~i~~iDTPG 125 (1527)
.+|+++|++|+|||||+|+|++.....+..+++|++....... +++ .++.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 3699999999999999999999886667788888876555422 122 4799999999
Q ss_pred hhhH----HHHHH---hhccccCEEEEEEeCCCC
Q psy1758 126 HEAF----TAMRA---RGAKVTDIVVLVVAADDG 152 (1527)
Q Consensus 126 ~e~f----~~~~~---~~~~~aD~~IlVvda~~g 152 (1527)
+..+ ..+.. .+++.+|++++|+|++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8643 22222 456899999999999875
No 363
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.32 E-value=1.4e-12 Score=164.74 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=106.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeee------EEE--EecCeEEEEEe
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKN------CSI--EYNGTRINIID 991 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~------~~~--~~~~~~iniiD 991 (1527)
....+|+++|.+|+|||||+++|+...-.-. .....|.++..+. ..+ ...+..++|||
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~--------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~D 104 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPK--------------ESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWD 104 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEEC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCccceEEEEeccccccceeecCCCceEEEEEEE
Confidence 3457899999999999999999986521100 0111222222110 001 12368999999
Q ss_pred CCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC--CccEEEEeccCCCCCChhhhHHHHHHHHhhhc
Q psy1758 992 TPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG--FKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 1069 (1527)
Q Consensus 992 TPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~g--lp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~ 1069 (1527)
|||+..|.......++.+|++|+|+|++.. .....++..+.+++ .|+|+|+||+|+...+.. ..+++...+..
T Consensus 105 t~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v-~~~~~~~~~~~-- 179 (535)
T 3dpu_A 105 FGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNI-EQKKINERFPA-- 179 (535)
T ss_dssp CCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCC-CHHHHHHHCGG--
T ss_pred CCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccccccc-CHHHHHHHHHh--
Confidence 999999998888889999999999999864 45555666666655 999999999999754321 12333333322
Q ss_pred ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1070 ~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
...|++++||++|. |+++|++.+.+.+...
T Consensus 180 -----~~~~~~~vSA~~g~----------gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 180 -----IENRFHRISCKNGD----------GVESIAKSLKSAVLHP 209 (535)
T ss_dssp -----GTTCEEECCC---------------CTTHHHHHHHHHTCT
T ss_pred -----cCCceEEEecCccc----------CHHHHHHHHHHHHhcc
Confidence 34579999999998 9999999999988654
No 364
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.31 E-value=1.7e-12 Score=143.96 Aligned_cols=146 Identities=19% Similarity=0.251 Sum_probs=89.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+....... . .....+++. .+.+..++||||||+.+|.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~----~---------~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~ 69 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----V---------VSQEPLSAA-------DYDGSGVTLVDFPGHVKLR 69 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB----C---------CCSSCEEET-------TGGGSSCEEEECCCCGGGT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe----e---------eecCceEEE-------EeeCceEEEEECCCcHHHH
Confidence 4557999999999999999999986531100 0 000111111 1256789999999999999
Q ss_pred HHHHHHHHh----cCEEEEEEeCC-CC-CChhHHHHHHHHHH-------cCCccEEEEeccCCCCCCh-hhhHHHHHHHH
Q psy1758 1000 GEVERILSM----VDNVLLLIDAV-EG-PMPQTRFVTRKALK-------LGFKPIVVVNKIDRSNARP-EWVVDATFDLF 1065 (1527)
Q Consensus 1000 ~ev~~~l~~----aD~ailVVDa~-~G-~~~qt~~~~~~~~~-------~glp~IvviNKiD~~~a~~-~~v~~~~~~~~ 1065 (1527)
..+..+++. +|++|+|+|++ .. ........+..... .++|+++|+||+|+...+. .++.+.+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~ 149 (218)
T 1nrj_B 70 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 149 (218)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHH
Confidence 988888877 99999999998 32 23333333333322 4899999999999987653 33333333333
Q ss_pred hhhcccccccCCcEEEeccccCC
Q psy1758 1066 DKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1066 ~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
..+... ...+++.+||++|.
T Consensus 150 ~~~~~~---~~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 150 QKVIER---RKKSLNEVERKINE 169 (218)
T ss_dssp HHHHHH---HHHHHHC-------
T ss_pred HHHHHH---Hhcccccccccccc
Confidence 222211 12467889999886
No 365
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.31 E-value=9e-13 Score=156.86 Aligned_cols=114 Identities=21% Similarity=0.164 Sum_probs=76.0
Q ss_pred ecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-ChhhhHHH
Q psy1758 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVDA 1060 (1527)
Q Consensus 982 ~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~v~~~ 1060 (1527)
|+++.++||||||+.++... ....+|++++|+|+..+...|.... ...++|.++|+||+|+.++ +.....++
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHH
Confidence 67899999999999987665 3689999999999987643332111 1235789999999999754 23334445
Q ss_pred HHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1061 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1061 ~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+++.+..+.........|++++||++|. |++.|++.|.+.++
T Consensus 219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~----------gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 219 YESALHILRRKYDEWQPRVLTCSALEKR----------GIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTB----------SHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCcEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 5544332221111113478999999998 99999999988764
No 366
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.30 E-value=4e-12 Score=164.46 Aligned_cols=118 Identities=17% Similarity=0.217 Sum_probs=80.2
Q ss_pred eEEEEEeCCCCCC---chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH-HHHHcCCccEEEEeccCCCCCC---hh--
Q psy1758 985 TRINIIDTPGHAD---FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR-KALKLGFKPIVVVNKIDRSNAR---PE-- 1055 (1527)
Q Consensus 985 ~~iniiDTPGh~d---f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~-~~~~~glp~IvviNKiD~~~a~---~~-- 1055 (1527)
..++||||||+.+ +...+..++..+|++|+|+|++.+........|. .+...+.|+++|+||+|+.... ++
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 4699999999765 4556667889999999999999887777666664 4455689999999999985432 11
Q ss_pred ----hhHHHHHHHHhh-hccccc-----ccCCcEEEeccc--------------cCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1056 ----WVVDATFDLFDK-LCATEE-----QLDFPVIYTSAL--------------HGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1056 ----~v~~~~~~~~~~-l~~~~~-----~~~~pvi~~SA~--------------~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+.+.+...+.. +..... ....+++++||+ +|. |++.|++.+.+.+
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~----------Gi~~L~~~L~~~l 323 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGT----------GFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTS----------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhcc----------CHHHHHHHHHHHH
Confidence 111223222111 111000 123479999999 555 8999999988776
Q ss_pred C
Q psy1758 1112 P 1112 (1527)
Q Consensus 1112 p 1112 (1527)
.
T Consensus 324 ~ 324 (695)
T 2j69_A 324 T 324 (695)
T ss_dssp H
T ss_pred H
Confidence 4
No 367
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=2.9e-12 Score=141.90 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=98.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
....+|+++|.+|+|||||+++++.....+.... ...|.+... ..+.+++ +.+.+|||+|...
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-------------~~~g~d~~~--~~i~~~~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-------------EVLGEDTYE--RTLMVDGESATIILLDMWENKG 99 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTEEE--EEEEETTEEEEEEEECCTTTTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-------------CccceeeEE--EEEEECCeeeEEEEeecCCCcc
Confidence 3457899999999999999999985432221100 001222211 2334444 4578899999876
Q ss_pred c-hHHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 998 F-GGEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 998 f-~~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
. ......+++.+|++|+|+|.++... .....++..+.. .++|+|+|.||+|+...+.- ..++... +.
T Consensus 100 ~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v-~~~e~~~-~a----- 172 (211)
T 2g3y_A 100 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV-SVSEGRA-CA----- 172 (211)
T ss_dssp HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-CHHHHHH-HH-----
T ss_pred hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceE-eHHHHHH-HH-----
Confidence 3 2222223467899999999986311 122233333432 37899999999998643211 0111111 11
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
....++++++||++|. |++++|+.+.+.+.
T Consensus 173 -~~~~~~~~e~SAk~g~----------~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 173 -VVFDCKFIETSAAVQH----------NVKELFEGIVRQVR 202 (211)
T ss_dssp -HHHTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -HHcCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 1124579999999998 99999999988763
No 368
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=3.2e-12 Score=153.16 Aligned_cols=155 Identities=15% Similarity=0.202 Sum_probs=79.7
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccC--------CceeEEEEEEEEEeCCe--EEEEEeCCCh-------hhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEA--------GGITQHIGAYNVVTNHG--SITFLDTPGH-------EAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~--------~giT~~~~~~~~~~~~~--~i~~iDTPG~-------e~f 129 (1527)
...+|+++|++|+|||||+++|.+... ..... ++++.+.....+...+. .+++|||||+ +.|
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 346799999999999999999866543 22221 34444444444444554 7899999998 555
Q ss_pred HHHHH-------hhccc-------------cCEEEEEEeC-CCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH
Q psy1758 130 TAMRA-------RGAKV-------------TDIVVLVVAA-DDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI 188 (1527)
Q Consensus 130 ~~~~~-------~~~~~-------------aD~~IlVvda-~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~ 188 (1527)
..+.. .+++. +|+++++++. ..+......+++..+ ..++|+|+|+||+|+........
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCCHHHHHH
Confidence 44433 33322 2467777775 445666555555554 36799999999999976322111
Q ss_pred -HHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 189 -KQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 189 -~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
...+... ...+ .++++++||++|.| ++.|..+...
T Consensus 195 ~k~~i~~~---~~~~--~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 195 LKKRILDE---IEEH--NIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp HHHHHHHH---TTCC---CCSCCCC----------CHHHHHH
T ss_pred HHHHHHHH---HHHC--CCCEEeCCCcCCCc-chhHHHHHHH
Confidence 1111111 1112 35899999999999 8877777643
No 369
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.29 E-value=2.6e-12 Score=154.18 Aligned_cols=155 Identities=19% Similarity=0.286 Sum_probs=104.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEE---------------------------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIG--------------------------------------- 107 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~--------------------------------------- 107 (1527)
..-|.|+++|++|+|||||+++|.+..+.....+.+|....
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 35569999999999999999999997763322222221100
Q ss_pred ---------------EEEEE-eCCeEEEEEeCCChhhH-------------HHHHHhhccccCEEEEEEeCCC-C-CcHH
Q psy1758 108 ---------------AYNVV-TNHGSITFLDTPGHEAF-------------TAMRARGAKVTDIVVLVVAADD-G-VMPQ 156 (1527)
Q Consensus 108 ---------------~~~~~-~~~~~i~~iDTPG~e~f-------------~~~~~~~~~~aD~~IlVvda~~-g-~~~q 156 (1527)
...+. .....++||||||...+ ..+...+++.+|++|+|+|+.+ . ...+
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 11111 12346899999997766 6777788999999999998754 2 2345
Q ss_pred HHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHH
Q psy1758 157 TREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 157 t~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
+...+..+...+.|+|+|+||+|+.+.... ....+ ... ......+++++|++++.++++.++...
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~~~~~-~~~----~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTD-AVEIL-EGR----SFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCC-SHHHH-TTS----SSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCccc-HHHHH-cCc----cccccCCeEEEEECChHHhccCCCHHH
Confidence 566666666678899999999999753221 11111 111 112235899999999999988776654
No 370
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.28 E-value=1.8e-11 Score=140.78 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=82.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch--
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG-- 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~-- 999 (1527)
..+|+++|++|+|||||+++|++.... ......|.|.......+.+++..++||||||+.+|.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~ 103 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVV---------------SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI 103 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcc---------------cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccc
Confidence 468999999999999999999865211 111224556556666778889999999999998875
Q ss_pred -HHHHHHHH------hcCEEEEEEeCCC-CCChhHHHHHHHHHHc-C----CccEEEEeccCCCCC
Q psy1758 1000 -GEVERILS------MVDNVLLLIDAVE-GPMPQTRFVTRKALKL-G----FKPIVVVNKIDRSNA 1052 (1527)
Q Consensus 1000 -~ev~~~l~------~aD~ailVVDa~~-G~~~qt~~~~~~~~~~-g----lp~IvviNKiD~~~a 1052 (1527)
......+. .+|++|+|+|+.. ........++..+... + .|+++|+||+|+...
T Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 104 NDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 23333332 6999999988764 3444445555555432 4 588999999998643
No 371
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.27 E-value=1.1e-11 Score=142.60 Aligned_cols=116 Identities=19% Similarity=0.108 Sum_probs=86.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH-------HHHHhh--c
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT-------AMRARG--A 137 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~-------~~~~~~--~ 137 (1527)
+.++|+++|++|+|||||+|+|.+..+ ..+..+++|.+.....+...+..++||||||+++|. ....++ .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 467999999999999999999998875 455667777777677778888899999999986553 222222 3
Q ss_pred cccCEEEEEEeCCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEcccCCcc
Q psy1758 138 KVTDIVVLVVAADD-GVMPQTREAIAHAKIS-G----VPLIVAINKIDKLDI 183 (1527)
Q Consensus 138 ~~aD~~IlVvda~~-g~~~qt~e~i~~~~~~-~----vpiIvviNKiDl~~~ 183 (1527)
..+|++++|+|++. .......+.+..+... + .|+++|+||+|+...
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 57999999999876 3444444555544322 2 699999999999653
No 372
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.27 E-value=2e-12 Score=154.80 Aligned_cols=172 Identities=21% Similarity=0.210 Sum_probs=105.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhh------------------hhcccceeEeeeeE----
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNE------------------IEKERGITIFSKNC---- 978 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~------------------~E~erGiTi~~~~~---- 978 (1527)
+.+.|+|+|++|+|||||+++|...... ....+ .++|..+ .....+..+.....
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~--~g~kV--~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~ 153 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE--RGHRV--AVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTL 153 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCE--EEEEEC----------------CHHHHTCTTEEEECCC--CCH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh--CCCce--EEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccc
Confidence 4578999999999999999999754100 00000 0011110 00112232221111
Q ss_pred ------------EEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEec
Q psy1758 979 ------------SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNK 1046 (1527)
Q Consensus 979 ------------~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNK 1046 (1527)
.+.+.++.+.||||||... .....+..+|.+|+|+|+..+...+... .....+|.++|+||
T Consensus 154 ~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK 226 (355)
T 3p32_A 154 GGVTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNK 226 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEEC
T ss_pred cchhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEEC
Confidence 1234678999999999654 3334568999999999998765443321 11134699999999
Q ss_pred cCCCCC-ChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1047 IDRSNA-RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1047 iD~~~a-~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+|+.+. ..+...+++...+..+.........|++++||++|. |+++|+++|.++++.
T Consensus 227 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~----------Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGR----------GLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB----------SHHHHHHHHHHHHHH
T ss_pred CCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCC----------CHHHHHHHHHHHHHH
Confidence 998643 123334444444433322222234689999999998 999999999988754
No 373
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.27 E-value=7.1e-12 Score=136.51 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=96.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC-
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d- 997 (1527)
...+|+++|.+|+|||||+++|++....+.... ...|.+.. ...+.+++ ..+.+|||+|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-------------~~~~~~~~--~~~~~~~~~~~~l~~~Dt~~~~~~ 69 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-------------EVLGEDTY--ERTLMVDGESATIILLDMWENKGE 69 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----------------GGGCTTEE--EEEEEETTEEEEEEEECCCCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-------------cccceeEE--EEEEEECCeEEEEEEEEeccCcch
Confidence 346899999999999999999986433221100 00122221 22344444 4567899999765
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+......+++.+|++++|+|.++....+ ...++..+.. .++|+++|.||+|+...+.- ..++.. .+.
T Consensus 70 ~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v-~~~~~~-~~a------ 141 (192)
T 2cjw_A 70 NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREV-SVSEGR-AXA------ 141 (192)
T ss_dssp -CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCS-CHHHHH-HHH------
T ss_pred hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccc-cHHHHH-HHH------
Confidence 2222344578899999999998632111 2223333332 37899999999998542211 111111 111
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
....++++++||++|. |++++++.+.+.+.
T Consensus 142 ~~~~~~~~e~SA~~g~----------~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 142 VVFDXKFIETSAAVQH----------NVKELFEGIVRQVR 171 (192)
T ss_dssp HHTTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HHhCCceEEeccccCC----------CHHHHHHHHHHHHH
Confidence 1123578999999998 99999999988763
No 374
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=1.3e-12 Score=157.87 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=46.8
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEE---------------------e
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE---------------------Y 982 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~---------------------~ 982 (1527)
+|+|+|++|+|||||+|+|++..... ...+++|+....+.+. +
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~----------------~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~ 65 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEI----------------ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR 65 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcc----------------cCCCCcccCCceEEEeeccCCchHHhhhhccccccccc
Confidence 79999999999999999998763111 1123344433333221 1
Q ss_pred c---CeEEEEEeCCCCCCchH-------HHHHHHHhcCEEEEEEeCCCC
Q psy1758 983 N---GTRINIIDTPGHADFGG-------EVERILSMVDNVLLLIDAVEG 1021 (1527)
Q Consensus 983 ~---~~~iniiDTPGh~df~~-------ev~~~l~~aD~ailVVDa~~G 1021 (1527)
+ ..+++||||||+.++.. .....++.+|++++|+|++++
T Consensus 66 ~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 66 NGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp TTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 2 36799999999865321 112346889999999999875
No 375
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.25 E-value=2.1e-11 Score=147.72 Aligned_cols=155 Identities=21% Similarity=0.215 Sum_probs=105.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC-eEEEEEeCCChhh-------HHHHHHhhccc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-GSITFLDTPGHEA-------FTAMRARGAKV 139 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-~~i~~iDTPG~e~-------f~~~~~~~~~~ 139 (1527)
....|+|+|++|+|||||+++|++........+.+|.......+.+++ ..+++|||||+.. +.....+.+..
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 346799999999999999999998876556666677666666677765 6899999999632 11222334567
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHH-----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAK-----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~-----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
+|.+++|+|+++....+.......+. ..+.|.++++||+|+... .....+.... .. ...+++++||+
T Consensus 236 a~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l---~~--~g~~vi~iSA~ 307 (416)
T 1udx_A 236 TRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADAL---AR--EGLAVLPVSAL 307 (416)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHH---HT--TTSCEEECCTT
T ss_pred HHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHH---Hh--cCCeEEEEECC
Confidence 99999999997211111111111111 236899999999999764 1122221111 01 12589999999
Q ss_pred CCCChhHHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQA 230 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~~ 230 (1527)
+++|+++|++.|....
T Consensus 308 ~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 308 TGAGLPALKEALHALV 323 (416)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHH
Confidence 9999999999997654
No 376
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.25 E-value=1.3e-11 Score=143.64 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=102.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH---
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG--- 1000 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~--- 1000 (1527)
+|.++|..++|||||+.++.... ... . ...-+.|+......+. ...+++||||||+.+|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~--~~~-~------------~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM--QPL-D------------TLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC--CSG-G------------GTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCC--CCC-c------------cceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhh
Confidence 47899999999999998765331 100 0 0012334433333332 347899999999999964
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHH----HH--cCCccEEEEeccCCCCCCh-hhhHHHHHHHHh-hhccc-
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKA----LK--LGFKPIVVVNKIDRSNARP-EWVVDATFDLFD-KLCAT- 1071 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~----~~--~glp~IvviNKiD~~~a~~-~~v~~~~~~~~~-~l~~~- 1071 (1527)
....+++.++++|+|+|+++. .......|... .. .++|+++|.||+|+...+. .+...++...-. ++...
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~ 143 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG 143 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence 457789999999999999987 54555444332 22 3789999999999976432 111222222111 12211
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.++.+++++.+||++. ++.+.|..+++.+.
T Consensus 144 ~~~~~i~f~eTSAkd~-----------nV~eAFs~iv~~li 173 (331)
T 3r7w_B 144 LDGVQVSFYLTSIFDH-----------SIYEAFSRIVQKLI 173 (331)
T ss_dssp CSCCCEEEECCCSSSS-----------HHHHHHHHHHTTSS
T ss_pred ccccCceEEEeccCCC-----------cHHHHHHHHHHHHH
Confidence 1125678999999974 67777777776654
No 377
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.24 E-value=1.9e-11 Score=156.54 Aligned_cols=161 Identities=19% Similarity=0.257 Sum_probs=109.9
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCcee------------------------------------------
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGIT------------------------------------------ 103 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT------------------------------------------ 103 (1527)
....|+|+++|++++|||||+|+|.+..+.....+.+|
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 35678999999999999999999998765211111111
Q ss_pred ---------EEEEEEEEEeCC-eEEEEEeCCCh-------------hhHHHHHHhhc-cccCEEEEEEeCCCCCcHHHH-
Q psy1758 104 ---------QHIGAYNVVTNH-GSITFLDTPGH-------------EAFTAMRARGA-KVTDIVVLVVAADDGVMPQTR- 158 (1527)
Q Consensus 104 ---------~~~~~~~~~~~~-~~i~~iDTPG~-------------e~f~~~~~~~~-~~aD~~IlVvda~~g~~~qt~- 158 (1527)
.+.....+...+ ..++|+||||. +.+..++..++ ..+|++++|+|++.+...+..
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 112222222322 36899999992 24555666665 578999999999998776665
Q ss_pred HHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 159 EAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 159 e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
..+..+...+.|+|+|+||+|+.+..... ..+........ ..+..+++++||++|.|+++|++.+...
T Consensus 208 ~ll~~L~~~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l-~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDPQGQRTIGVITKLDLMDEGTDA--RDVLENKLLPL-RRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCTTCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCC-SSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEeCcccCCcchhh--HHHHHHHhhhh-hccCCceEEecccccccchhHHHHHHHH
Confidence 67777777889999999999997643211 11111111111 1134578999999999999999999754
No 378
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.24 E-value=1.4e-11 Score=134.69 Aligned_cols=158 Identities=21% Similarity=0.223 Sum_probs=104.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
...+|+++|+.|+|||||+++|++...... ..+.++.......+.+++ ..+.||||||+..|
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~----------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 67 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 67 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCccceeEEEEEEEECCEEEEEEEEECCCchhh
Confidence 457899999999999999999986522111 011122223334555665 46788999999988
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.......+..+|++++|+|+++....+. ..++..+.. .+.|+++++||+|+...+.. ..++.+.+.. .
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~~~~a~~l~~-------~ 139 (199)
T 2f9l_A 68 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV-PTDEARAFAE-------K 139 (199)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHH-------H
T ss_pred hhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCc-CHHHHHHHHH-------H
Confidence 8777777889999999999987432222 233333332 36788999999998643211 1122222221 1
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..++++.+||+++. |++.+++.+.+.+.
T Consensus 140 ~~~~~~d~Sal~~~----------~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 140 NNLSFIETSALDST----------NVEEAFKNILTEIY 167 (199)
T ss_dssp TTCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23578889999998 99999998887663
No 379
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.21 E-value=1.2e-11 Score=147.96 Aligned_cols=157 Identities=22% Similarity=0.222 Sum_probs=93.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-------ccccCCceeEEE-----------------EEEE------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-------VFSEAGGITQHI-----------------GAYN------------ 110 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-------~~~~~~giT~~~-----------------~~~~------------ 110 (1527)
.+.++|+++|++|+|||||+++|...-. .....++.+... ..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 4567999999999999999999864311 000011111100 0000
Q ss_pred ----------EEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccC
Q psy1758 111 ----------VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180 (1527)
Q Consensus 111 ----------~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl 180 (1527)
+...+..+.||||||...- ....+..+|++++|+|+..+...+... ....+.|.++|+||+|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKADG 229 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCCG
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCCC
Confidence 0224578999999994321 122348899999999988754333221 01134699999999999
Q ss_pred Ccchh-HHHHHHHhhhcc-c-ccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 181 LDINL-DRIKQDLISEQV-I-PEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 181 ~~~~~-~~~~~~l~~~~~-~-~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
..... ......+..... . ....+...|++++||++|.|+++|++.|....
T Consensus 230 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 230 EHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp GGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 75321 122222221110 0 00011136899999999999999999997553
No 380
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.20 E-value=2e-11 Score=145.23 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=92.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcc------cc-ccccCCceeEEE-----------------EEEE------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKT------NV-VFSEAGGITQHI-----------------GAYN------------ 110 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~------~~-~~~~~~giT~~~-----------------~~~~------------ 110 (1527)
.+..+|+++|++|+|||||+++|... .+ .....++.|..- ..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 46678999999999999999998632 11 111112111100 0000
Q ss_pred ----------EEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccC
Q psy1758 111 ----------VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180 (1527)
Q Consensus 111 ----------~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl 180 (1527)
+.+.+..++||||||...+... ....+|++++|+|+..+...++... ...+.|.++|+||+|+
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl 206 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDG 206 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCT
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCC
Confidence 0144678999999997665543 3588999999999986533222111 1125689999999999
Q ss_pred Ccc-hhHHHHHHHhhh----cccccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 181 LDI-NLDRIKQDLISE----QVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 181 ~~~-~~~~~~~~l~~~----~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
.+. +.......+... ......| ..+++++||++|.|+++|++.|....
T Consensus 207 ~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 207 DNHTNVAIARHMYESALHILRRKYDEW--QPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCSBTTB--CCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhccccccCC--CCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 763 222222222211 1000112 24789999999999999999997643
No 381
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.20 E-value=4.7e-11 Score=144.64 Aligned_cols=158 Identities=22% Similarity=0.288 Sum_probs=108.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCCC--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD-- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~d-- 997 (1527)
....|+|+|++|+|||||+++|+.....+. ....+|+.+....+.+++ ..++++||||+.+
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~----------------~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a 219 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIA----------------PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 219 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEEC----------------CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCG
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCcccc----------------CcccceecceeeEEEecCcceEEEEeccccccch
Confidence 345799999999999999999976532111 122345555556677775 7899999999854
Q ss_pred -----chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHHhh
Q psy1758 998 -----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 998 -----f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~ 1067 (1527)
+.....+.+..+|.+++++|++..+..+....++.... ...|.++|+||+|.... ..++++.+.+..
T Consensus 220 ~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~ 296 (416)
T 1udx_A 220 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAR 296 (416)
T ss_dssp GGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHh
Confidence 33445556677999999999972222222222233222 36899999999998753 334444443321
Q ss_pred hcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1068 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..++++++||+++. |+++|++.|.+.+...
T Consensus 297 -------~g~~vi~iSA~~g~----------gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 297 -------EGLAVLPVSALTGA----------GLPALKEALHALVRST 326 (416)
T ss_dssp -------TTSCEEECCTTTCT----------THHHHHHHHHHHHHTS
T ss_pred -------cCCeEEEEECCCcc----------CHHHHHHHHHHHHHhc
Confidence 23579999999998 9999999999887543
No 382
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.18 E-value=9.7e-12 Score=148.23 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=87.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc------cc-ccccCCceeE-------------------------EEEEEE-----
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT------NV-VFSEAGGITQ-------------------------HIGAYN----- 110 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~------~~-~~~~~~giT~-------------------------~~~~~~----- 110 (1527)
..+.|+|+|.+|+|||||+|+|.+. .+ .....++... ......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3689999999999999999999852 11 1111111110 000000
Q ss_pred ---------EEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC
Q psy1758 111 ---------VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181 (1527)
Q Consensus 111 ---------~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~ 181 (1527)
+...+..+.|+||||..... ......+|++++|+|+.++...+... . .....|.++|+||+|+.
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~---~-~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK---R-GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH---H-HHHhcCCEEEEeeecCC
Confidence 01255689999999942111 22356899999999998754322211 1 12457889999999996
Q ss_pred cchh-HHHHHHHhhhcc--cccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 182 DINL-DRIKQDLISEQV--IPEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 182 ~~~~-~~~~~~l~~~~~--~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
+... ......+..... .+.......+++++||++|.|+++|+++|....
T Consensus 226 ~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 226 LIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp GHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 5321 111122211110 110001135789999999999999999997543
No 383
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.2e-11 Score=134.00 Aligned_cols=127 Identities=22% Similarity=0.307 Sum_probs=82.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+....... ......+++. .+.+..+++|||||+.+|.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-------------~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-------------VVSQEPLSAA-------DYDGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-------------cccCCCceee-------eecCCeEEEEECCCCchHH
Confidence 3457999999999999999999986521100 0001112221 2256789999999999998
Q ss_pred HHHHHHHHh----cCEEEEEEeCCCCCCh--hHHHHHHHHHH-------cCCccEEEEeccCCCCCC-hhhhHHHHHHHH
Q psy1758 1000 GEVERILSM----VDNVLLLIDAVEGPMP--QTRFVTRKALK-------LGFKPIVVVNKIDRSNAR-PEWVVDATFDLF 1065 (1527)
Q Consensus 1000 ~ev~~~l~~----aD~ailVVDa~~G~~~--qt~~~~~~~~~-------~glp~IvviNKiD~~~a~-~~~v~~~~~~~~ 1065 (1527)
..+..++.. +|++|+|+|++..... .....+..... .++|+++|+||+|+.+.+ .+++.+.+...+
T Consensus 106 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l 185 (193)
T 2ged_A 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 185 (193)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHH
Confidence 777777766 8999999999822111 12222222221 389999999999997654 455555555444
Q ss_pred h
Q psy1758 1066 D 1066 (1527)
Q Consensus 1066 ~ 1066 (1527)
.
T Consensus 186 ~ 186 (193)
T 2ged_A 186 Q 186 (193)
T ss_dssp H
T ss_pred H
Confidence 3
No 384
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.16 E-value=2.1e-11 Score=135.53 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=92.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc------cccCCceeEE--------EEEEEE------------------EeCC
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV------FSEAGGITQH--------IGAYNV------------------VTNH 115 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~------~~~~~giT~~--------~~~~~~------------------~~~~ 115 (1527)
+.++|+++|++|+|||||+++|...... ....++.+.+ .....+ .+.+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 5678999999999999999999765211 1111111100 000111 1234
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc---hhHHHHHHH
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI---NLDRIKQDL 192 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~---~~~~~~~~l 192 (1527)
..+.+|||||+-.-. ......++.+++|+|+.++....+ ......+.|.++|+||+|+.+. +.......+
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 181 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDVVE----KHPEIFRVADLIVINKVALAEAVGADVEKMKADA 181 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTHHH----HCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchhhh----hhhhhhhcCCEEEEecccCCcchhhHHHHHHHHH
Confidence 578999999951100 011135689999999998754332 2223346899999999998642 222222222
Q ss_pred hhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 193 ISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 193 ~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
.. .+...+++++||++|.|++++++.|...
T Consensus 182 ~~-------~~~~~~i~~~Sa~~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 182 KL-------INPRAKIIEMDLKTGKGFEEWIDFLRGI 211 (221)
T ss_dssp HH-------HCTTSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HH-------hCCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 21 1234689999999999999999999754
No 385
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.15 E-value=3.1e-11 Score=144.44 Aligned_cols=172 Identities=15% Similarity=0.207 Sum_probs=101.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCc------cccccc-cc----------------ceecchhhhh--------cc--
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGT------FRKNQN-IN----------------ARIMDSNEIE--------KE-- 968 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~------~~~~~~-~~----------------~~~~D~~~~E--------~e-- 968 (1527)
..+|+++|.+|+|||||+|+|++..-. ..+... +. ..+.+...+. +-
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999875321 111010 00 0001221111 11
Q ss_pred --cceeEeeeeEEEEec-CeEEEEEeCCCCCC-------------chHHHHHHHHhcC-EEEEEEeCCCCCChhHHH-HH
Q psy1758 969 --RGITIFSKNCSIEYN-GTRINIIDTPGHAD-------------FGGEVERILSMVD-NVLLLIDAVEGPMPQTRF-VT 1030 (1527)
Q Consensus 969 --rGiTi~~~~~~~~~~-~~~iniiDTPGh~d-------------f~~ev~~~l~~aD-~ailVVDa~~G~~~qt~~-~~ 1030 (1527)
.|+........+... +..++||||||..+ +...+..++..++ .+++|+|+..+...+... ++
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 344333333333333 57899999999643 3344555665555 555677887766666543 66
Q ss_pred HHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC-CcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1031 RKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1031 ~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~-~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
+.+...+.|.++|+||+|+.+...+ ..+.+.. .. ...... ++++++||++|. |++.|++++.+
T Consensus 191 ~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~---~~--~~l~~~~~~v~~~SA~~~~----------~i~~l~~~l~~ 254 (353)
T 2x2e_A 191 KEVDPQGQRTIGVITKLDLMDEGTD-ARDVLEN---KL--LPLRRGYIGVVNRSQKDID----------GKKDITAALAA 254 (353)
T ss_dssp HHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTT---CS--SCCTTCEEECCCCCHHHHH----------TTCCHHHHHHH
T ss_pred HHhCcCCCceEEEeccccccCcchh-HHHHHhC---Cc--ccccCCceEEEeCCccccc----------ccccHHHHHHH
Confidence 6666678999999999999754321 1111110 00 011122 367889999998 77788887765
No 386
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.15 E-value=1.2e-11 Score=137.43 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=100.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc---eecchhhhhcccceeEee-ee---EEE----------Ee
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA---RIMDSNEIEKERGITIFS-KN---CSI----------EY 982 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~---~~~D~~~~E~erGiTi~~-~~---~~~----------~~ 982 (1527)
.+.++|+++|++|+|||||+++|+.......+...+.. .-.|....+ ..|+++.. .. +.+ .+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 45689999999999999999999976322111111110 011222222 12443211 11 111 34
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
.+..+.||||||..+...... ...+.+++|+|+..+... .+..+...+.|.++|+||+|+.+.. ....+++.
T Consensus 107 ~~~d~iiidt~G~~~~~~~~~---~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~~ 178 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPVDFD---LGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAV-GADVEKMK 178 (221)
T ss_dssp TTCSEEEEEEEEBSSGGGGCC---CSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHH-TCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCCchhc---cccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcch-hhHHHHHH
Confidence 567899999999422111100 146889999999887432 2333344578999999999985320 01122333
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+.+..+. ...|++++||++|. |+++|++.+.+.+..
T Consensus 179 ~~~~~~~-----~~~~i~~~Sa~~g~----------gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAKLIN-----PRAKIIEMDLKTGK----------GFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHC-----TTSEEEECBTTTTB----------THHHHHHHHHHHHC-
T ss_pred HHHHHhC-----CCCeEEEeecCCCC----------CHHHHHHHHHHHHHH
Confidence 3232221 13579999999998 999999999887653
No 387
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.14 E-value=1.2e-10 Score=126.47 Aligned_cols=158 Identities=21% Similarity=0.219 Sum_probs=104.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe--EEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT--RINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~--~iniiDTPGh~d 997 (1527)
+...+|+|+|+.|+|||||+++|+....... ..+.++.+.....+.+++. .+.+|||||+..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~----------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCS----------------CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 3457899999999999999999986522111 0112233333445666664 456799999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+...++.+|++++|+|.++.... .....+..+.. .+.|+++++||+|+.+.... ..++.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~~~~a~~l~~------- 162 (191)
T 1oix_A 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV-PTDEARAFAE------- 162 (191)
T ss_dssp SSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHH-------
T ss_pred hhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc-CHHHHHHHHH-------
Confidence 988888888899999999998764221 22223333332 36788999999998642211 1122222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...++++.+||+++. |++.+++.+.+.+
T Consensus 163 ~~~~~~ld~Sald~~----------~v~~l~~~l~~~i 190 (191)
T 1oix_A 163 KNGLSFIETSALDST----------NVEAAFQTILTEI 190 (191)
T ss_dssp HTTCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 123568889999998 9999999987654
No 388
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.14 E-value=5.9e-11 Score=149.44 Aligned_cols=116 Identities=24% Similarity=0.353 Sum_probs=90.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc---cccCCceeEEEEEEE---------------------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV---FSEAGGITQHIGAYN--------------------------------- 110 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~---~~~~~giT~~~~~~~--------------------------------- 110 (1527)
...++|+|+|++|+|||||+|+|.+..+. .+..++++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998763 555555543221110
Q ss_pred ---EEeCC---eEEEEEeCCChhh-----------HHHHHHhhccccCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEE
Q psy1758 111 ---VVTNH---GSITFLDTPGHEA-----------FTAMRARGAKVTDIVVLVVAADD-GVMPQTREAIAHAKISGVPLI 172 (1527)
Q Consensus 111 ---~~~~~---~~i~~iDTPG~e~-----------f~~~~~~~~~~aD~~IlVvda~~-g~~~qt~e~i~~~~~~~vpiI 172 (1527)
+.+.+ ..++||||||+.. |......++..+|++++|+|+++ +...+...++..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 01111 3689999999765 77788888899999999999998 577788888888777788999
Q ss_pred EEEEcccCCc
Q psy1758 173 VAINKIDKLD 182 (1527)
Q Consensus 173 vviNKiDl~~ 182 (1527)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999975
No 389
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.13 E-value=3.3e-10 Score=129.26 Aligned_cols=114 Identities=19% Similarity=0.162 Sum_probs=72.6
Q ss_pred eEEEEEeCCChhhHHHHH------HhhccccCEEEEEEeCCCCCcHHHHHH-----HHHHHHcCCCEEEEEEcccCCcch
Q psy1758 116 GSITFLDTPGHEAFTAMR------ARGAKVTDIVVLVVAADDGVMPQTREA-----IAHAKISGVPLIVAINKIDKLDIN 184 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~------~~~~~~aD~~IlVvda~~g~~~qt~e~-----i~~~~~~~vpiIvviNKiDl~~~~ 184 (1527)
..+.||||||+..+.... ...+.. +++++|+|+.....+..... .......+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 379999999987764332 235566 89999999877555443221 122334579999999999987532
Q ss_pred h-HHHHHHHhhh-----cc----------------cccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 185 L-DRIKQDLISE-----QV----------------IPEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 185 ~-~~~~~~l~~~-----~~----------------~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
. ......+... .. ....++...+++++||++|.|+++|+++|....
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 1 1111111000 00 012333345899999999999999999997554
No 390
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.13 E-value=2.5e-10 Score=136.09 Aligned_cols=110 Identities=18% Similarity=0.166 Sum_probs=86.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChh-------hHHHHHHhhccccCE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE-------AFTAMRARGAKVTDI 142 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e-------~f~~~~~~~~~~aD~ 142 (1527)
..|+|+|.||+|||||+|+|++.....+..+++|++.....+.+.+.++.|+||||-- .........++.||+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 4899999999999999999999998889999999999999999999999999999931 122333456688999
Q ss_pred EEEEEeCCCCCcHHHHHHH-HHHHH-----cCCCEEEEEEcccCC
Q psy1758 143 VVLVVAADDGVMPQTREAI-AHAKI-----SGVPLIVAINKIDKL 181 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~e~i-~~~~~-----~~vpiIvviNKiDl~ 181 (1527)
+++|+|+.+... ..+.+ ..+.. ...|.++++||+|..
T Consensus 153 il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 153 LFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999987432 12211 22222 246888999999974
No 391
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.12 E-value=5.3e-11 Score=141.89 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=67.7
Q ss_pred ecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHH
Q psy1758 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDA 1060 (1527)
Q Consensus 982 ~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~ 1060 (1527)
+.++.+.|+||||..+.. ......+|.+++|+|+..|...|... . .-...|.++|+||+|+.+.. ......+
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~~~~~~~~~~~~ 236 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGDLIVPARRIQAE 236 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCCCchhHHHHHHH
Confidence 467899999999965332 33467899999999998764333211 1 12467899999999985321 1112233
Q ss_pred HHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1061 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1061 ~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+...+..+.........|++++||++|. |++.|+++|.+.++
T Consensus 237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~----------Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 237 YVSALKLLRKRSQVWKPKVIRISARSGE----------GISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHTTCC-----CCCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCceEEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 3322221111100113478999999998 99999999988764
No 392
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.09 E-value=8.9e-11 Score=147.79 Aligned_cols=132 Identities=22% Similarity=0.195 Sum_probs=88.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCc---ccccccccc-e-ecchhhhhcccceeEe------------------ee
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGT---FRKNQNINA-R-IMDSNEIEKERGITIF------------------SK 976 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~---~~~~~~~~~-~-~~D~~~~E~erGiTi~------------------~~ 976 (1527)
...++|+|+|++|+|||||+|+|++.... +.....+.. . +......+...|.++. ..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45679999999999999999999987431 111111111 0 1100000011111110 01
Q ss_pred eEEEEecC---eEEEEEeCCCCCC-----------chHHHHHHHHhcCEEEEEEeCCC-CCChhHHHHHHHHHHcCCccE
Q psy1758 977 NCSIEYNG---TRINIIDTPGHAD-----------FGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTRKALKLGFKPI 1041 (1527)
Q Consensus 977 ~~~~~~~~---~~iniiDTPGh~d-----------f~~ev~~~l~~aD~ailVVDa~~-G~~~qt~~~~~~~~~~glp~I 1041 (1527)
...+.+.+ ..++||||||+.+ |...+..++..+|++|+|+|+++ +...++..++..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 11222222 4689999999876 67788888999999999999988 678888888888887889999
Q ss_pred EEEeccCCCC
Q psy1758 1042 VVVNKIDRSN 1051 (1527)
Q Consensus 1042 vviNKiD~~~ 1051 (1527)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999864
No 393
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.07 E-value=1.6e-10 Score=148.15 Aligned_cols=172 Identities=15% Similarity=0.201 Sum_probs=107.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccC------cccccc---------c-c-------cceecchhhh----h--------
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSG------TFRKNQ---------N-I-------NARIMDSNEI----E-------- 966 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g------~~~~~~---------~-~-------~~~~~D~~~~----E-------- 966 (1527)
.++|+++|.+++|||||+|+|++..- ...+.+ . . ...+.|...+ +
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 46899999999999999999997531 111000 0 0 0001111111 0
Q ss_pred cccceeEeeeeEEEEec-CeEEEEEeCCCCCC-------------chHHHHHHH-HhcCEEEEEEeCCCCCChhHH-HHH
Q psy1758 967 KERGITIFSKNCSIEYN-GTRINIIDTPGHAD-------------FGGEVERIL-SMVDNVLLLIDAVEGPMPQTR-FVT 1030 (1527)
Q Consensus 967 ~erGiTi~~~~~~~~~~-~~~iniiDTPGh~d-------------f~~ev~~~l-~~aD~ailVVDa~~G~~~qt~-~~~ 1030 (1527)
...|++-+.....+.+. ...+.||||||... +...+..++ ..+|.+++|+||+.++..+.. .++
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll 210 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 210 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence 11344433333444443 35799999999654 223334444 478999999999998887776 677
Q ss_pred HHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC-CcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1031 RKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1031 ~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~-~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
..+...+.|.|+|+||+|+...... ...+.. .... ..... .|++++||++|. |++.|++++.+
T Consensus 211 ~~L~~~g~pvIlVlNKiDlv~~~~~--~~~il~--~~~~--~l~lg~~~VV~iSA~~G~----------GvdeL~eaI~~ 274 (772)
T 3zvr_A 211 KEVDPQGQRTIGVITKLDLMDEGTD--ARDVLE--NKLL--PLRRGYIGVVNRSQKDID----------GKKDITAALAA 274 (772)
T ss_dssp HHHCTTCSSEEEEEECTTSSCTTCC--SHHHHT--TCSS--CCSSCEEECCCCCCEESS----------SSEEHHHHHHH
T ss_pred HHHHhcCCCEEEEEeCcccCCcchh--hHHHHH--HHhh--hhhccCCceEEecccccc----------cchhHHHHHHH
Confidence 7787889999999999999754311 111110 0000 00112 368899999998 88888888876
No 394
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.07 E-value=7.9e-11 Score=134.31 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=56.5
Q ss_pred hcCEEEEEEeCCCC--CC-hhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1008 MVDNVLLLIDAVEG--PM-PQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1008 ~aD~ailVVDa~~G--~~-~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+|++|+|+|+++. .. ......+..+. ..++|+++|.||+|+...+ .+++....... ...+|++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~---~v~~~~~~~~~------~~~~~~~ 232 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER---YIRDAHTFALS------KKNLQVV 232 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH---HHHHHHHHHHT------SSSCCEE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH---HHHHHHHHHHh------cCCCeEE
Confidence 58999999999875 22 22233333332 2479999999999985422 22333332211 1246899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+||++|. |++++++.|.+.+
T Consensus 233 e~SAk~g~----------gv~elf~~l~~~l 253 (255)
T 3c5h_A 233 ETSARSNV----------NVDLAFSTLVQLI 253 (255)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEECCCCC----------CHHHHHHHHHHHh
Confidence 99999998 9999999998764
No 395
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.05 E-value=2.1e-10 Score=133.95 Aligned_cols=154 Identities=14% Similarity=0.192 Sum_probs=78.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc-ccccccC--------CceeEEEEEEEEEeC--CeEEEEEeCCCh-------hhHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT-NVVFSEA--------GGITQHIGAYNVVTN--HGSITFLDTPGH-------EAFT 130 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~-~~~~~~~--------~giT~~~~~~~~~~~--~~~i~~iDTPG~-------e~f~ 130 (1527)
..+|+++|++|+|||||+++|.+. .+..+.. +++......+.+... ...+++|||||+ +.|.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 467899999999999999998765 3322211 111111112222222 237899999997 4443
Q ss_pred HHHH-------hhcc-------------ccCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-H
Q psy1758 131 AMRA-------RGAK-------------VTDIVVLVVAADD-GVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-I 188 (1527)
Q Consensus 131 ~~~~-------~~~~-------------~aD~~IlVvda~~-g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~ 188 (1527)
.+.. .+++ .+++++++++.+. ++.+...+.+..+. .++|+++|+||+|+....... .
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~ 176 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERL 176 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHHH
Confidence 3332 2222 2345666666554 57776666666553 467999999999997532111 1
Q ss_pred HHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 189 KQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 189 ~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
...... ....+ .++++++||++| |++++|+.+...
T Consensus 177 ~~~~~~---~~~~~--~~~~~e~Sa~~~-~v~e~f~~l~~~ 211 (301)
T 2qnr_A 177 KKRILD---EIEEH--NIKIYHLPDAES-DEDEDFKEQTRL 211 (301)
T ss_dssp HHHHHH---HHHHT--TCCCCCCC----------CHHHHHH
T ss_pred HHHHHH---HHHHc--CCeEEecCCccc-cccHHHHHHHHH
Confidence 111111 11122 258999999999 999999988754
No 396
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.03 E-value=1.8e-10 Score=136.56 Aligned_cols=82 Identities=20% Similarity=0.135 Sum_probs=62.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC-----------------eEEEEEeCCChhhHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-----------------GSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-----------------~~i~~iDTPG~e~f~~~ 132 (1527)
.+|+++|.+|+|||||+|+|++..+..+..+++|++.....+.+++ ..+.||||||+..+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 5799999999999999999999887777778888776665666655 46999999998776432
Q ss_pred -------HHhhccccCEEEEEEeCCC
Q psy1758 133 -------RARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 133 -------~~~~~~~aD~~IlVvda~~ 151 (1527)
....++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2234688999999999986
No 397
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.01 E-value=2.4e-10 Score=137.15 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=65.3
Q ss_pred CeEEEEEeCCCCCCc-------------hHHHHHHHHhcCEEEEEEeCCC-CCCh-hHHHHHHHHHHcCCccEEEEeccC
Q psy1758 984 GTRINIIDTPGHADF-------------GGEVERILSMVDNVLLLIDAVE-GPMP-QTRFVTRKALKLGFKPIVVVNKID 1048 (1527)
Q Consensus 984 ~~~iniiDTPGh~df-------------~~ev~~~l~~aD~ailVVDa~~-G~~~-qt~~~~~~~~~~glp~IvviNKiD 1048 (1527)
...+.||||||..++ ...+..++..+|++|+|+|+.. .... +...+++.+...+.|.|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999998887 5566778899999999998753 2222 223344444456889999999999
Q ss_pred CCCCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCC
Q psy1758 1049 RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1049 ~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
+...... .. +.+ ......+..|++.+|++++.
T Consensus 215 l~~~~~~-~~----~~~---~~~~~~~~~~~~~v~~~s~~ 246 (360)
T 3t34_A 215 LMDKGTD-AV----EIL---EGRSFKLKYPWVGVVNRSQA 246 (360)
T ss_dssp GCCTTCC-SH----HHH---TTSSSCCSSCCEEECCCCHH
T ss_pred cCCCccc-HH----HHH---cCccccccCCeEEEEECChH
Confidence 8754321 11 111 11223455788899999875
No 398
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.99 E-value=4.7e-10 Score=133.71 Aligned_cols=113 Identities=17% Similarity=0.312 Sum_probs=86.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC---
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD--- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d--- 997 (1527)
..-+|+|+|.||+|||||+|+|++.... +...+++|+++..+.+.+.+.++.|+||||..+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~----------------v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~ 134 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESE----------------AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK 134 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCC----------------GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC--
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCc----------------ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch
Confidence 3468999999999999999999865322 233467899999999999999999999999754
Q ss_pred ----chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCccEEEEeccCCC
Q psy1758 998 ----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL-----GFKPIVVVNKIDRS 1050 (1527)
Q Consensus 998 ----f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~-----glp~IvviNKiD~~ 1050 (1527)
.+..+...++.||++++|||++++. .+...+...+... ..|.++++||+|+.
T Consensus 135 ~~~~~g~~~l~~i~~ad~il~vvD~~~p~-~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 135 DGRGRGKQVIAVARTCNLLFIILDVNKPL-HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp ---CHHHHHHHHHHHCSEEEEEEETTSHH-HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hhhHHHHHHHHHHHhcCccccccccCccH-HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 3345667789999999999998742 2223333344433 46889999999974
No 399
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.99 E-value=1e-09 Score=128.93 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=86.3
Q ss_pred eEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC-----------CCcHHHHHHHHHHHH----c
Q psy1758 103 TQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD-----------GVMPQTREAIAHAKI----S 167 (1527)
Q Consensus 103 T~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~-----------g~~~qt~e~i~~~~~----~ 167 (1527)
|..+....+..++..+.+|||+||+.|...+..+++.++++|+|+|+++ .-...+...+..+.. .
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 3344556677778899999999999999999999999999999999982 112334444444332 4
Q ss_pred CCCEEEEEEcccCCcch------------------hHHHHHHHhhhc------c-cccccC-----------CCCcEEEe
Q psy1758 168 GVPLIVAINKIDKLDIN------------------LDRIKQDLISEQ------V-IPEEYG-----------GASPFISI 211 (1527)
Q Consensus 168 ~vpiIvviNKiDl~~~~------------------~~~~~~~l~~~~------~-~~~~~~-----------~~~~v~~i 211 (1527)
++|+++++||+|+.... .++....+.... . ...... ..+.++++
T Consensus 228 ~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~T 307 (340)
T 4fid_A 228 GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPT 307 (340)
T ss_dssp TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEE
T ss_pred CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEE
Confidence 78999999999986421 111111111111 0 000001 24678999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++..||..+|+.+...
T Consensus 308 sA~dt~nv~~vF~~v~~~ 325 (340)
T 4fid_A 308 NATDGSNIKRVFMLAVDV 325 (340)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred EeeCcHHHHHHHHHHHHH
Confidence 999999999999998754
No 400
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.92 E-value=6.9e-10 Score=132.45 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=60.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC---------------------CeEEEEEeCCChhh
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN---------------------HGSITFLDTPGHEA 128 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~---------------------~~~i~~iDTPG~e~ 128 (1527)
.+|+++|.+|+|||||+++|++........+++|++.....+... +..+.||||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 469999999999999999998876545555555554433333322 34799999999765
Q ss_pred H-------HHHHHhhccccCEEEEEEeCCC
Q psy1758 129 F-------TAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 129 f-------~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
+ .......++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4 2333456789999999999986
No 401
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.92 E-value=2.1e-09 Score=119.60 Aligned_cols=149 Identities=21% Similarity=0.236 Sum_probs=86.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEE--------------EEEEEeC------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIG--------------AYNVVTN------------------ 114 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~--------------~~~~~~~------------------ 114 (1527)
.+.++|+++|++|+|||||+++|....+.....+.+..++. ...+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35689999999999999999999876543222222222221 1111111
Q ss_pred --CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc---hhHHHH
Q psy1758 115 --HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI---NLDRIK 189 (1527)
Q Consensus 115 --~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~---~~~~~~ 189 (1527)
+..+.++||+|.-.- ....-...+..+.++|+..+...... .....+.|.++|+||+|+.+. ......
T Consensus 116 ~~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 188 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLADAVGADIKKME 188 (226)
T ss_dssp GGGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred cCCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCchhHHHHHHHH
Confidence 115677777773100 01111344667788886543211110 011246889999999998642 122222
Q ss_pred HHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
..+. .+....+++++||++|.|++++++.|...
T Consensus 189 ~~~~-------~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 189 NDAK-------RINPDAEVVLLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp HHHH-------HHCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHH-------HhCCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 2111 11234689999999999999999999754
No 402
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=1.6e-09 Score=131.22 Aligned_cols=153 Identities=19% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccC--------CceeEEEEEEEEEeCC--eEEEEEeCCChhhHH-------H
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEA--------GGITQHIGAYNVVTNH--GSITFLDTPGHEAFT-------A 131 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~--------~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~-------~ 131 (1527)
..+|+|+|++|+|||||+++|.+..+..... +++..+...+.+...+ ..+++|||||...+. .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 3578999999999999999999876521111 1122222222222222 268999999976642 1
Q ss_pred HH------------------Hhhccc--cCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHH
Q psy1758 132 MR------------------ARGAKV--TDIVVLVVAAD-DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIK 189 (1527)
Q Consensus 132 ~~------------------~~~~~~--aD~~IlVvda~-~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~ 189 (1527)
+. ...+.. +|+++++++.+ .++.+...+++..+.. ++|+|+|+||+|+..... ....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k 189 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 189 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHH
Confidence 10 112233 34566666665 5777777777776654 899999999999975321 1111
Q ss_pred HHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHH
Q psy1758 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
..+... ...+ .++++++||+++.++++++..+.
T Consensus 190 ~~i~~~---~~~~--~i~~~~~sa~~~~~v~~~~~~l~ 222 (418)
T 2qag_C 190 KQIMKE---IQEH--KIKIYEFPETDDEEENKLVKKIK 222 (418)
T ss_dssp HHHHHH---HHHH--TCCCCCCC---------------
T ss_pred HHHHHH---HHHc--CCeEEeCCCCCCcCHHHHHHHHH
Confidence 111111 1111 25788999999999998777664
No 403
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.88 E-value=5.9e-09 Score=123.58 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=59.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-----------------e
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----------------T 985 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----------------~ 985 (1527)
.+|+|+|++|+|||||+++|+...... ...+++|+.+..+.+.+.+ .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v----------------~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEA----------------ANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcc----------------cCCCCceECceEEEEecCCcccceeeeeecccceeee
Confidence 479999999999999999998753111 1223445555555555544 5
Q ss_pred EEEEEeCCCCCCchH-------HHHHHHHhcCEEEEEEeCCC
Q psy1758 986 RINIIDTPGHADFGG-------EVERILSMVDNVLLLIDAVE 1020 (1527)
Q Consensus 986 ~iniiDTPGh~df~~-------ev~~~l~~aD~ailVVDa~~ 1020 (1527)
.++||||||+.++.. .....++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 799999999988742 34556899999999999986
No 404
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.86 E-value=1.2e-09 Score=124.75 Aligned_cols=115 Identities=23% Similarity=0.176 Sum_probs=72.9
Q ss_pred CeEEEEEeCCCCCCchH------HHHHHHHhcCEEEEEEeCCCCCChhHHH-H----HHHHHHcCCccEEEEeccCCCCC
Q psy1758 984 GTRINIIDTPGHADFGG------EVERILSMVDNVLLLIDAVEGPMPQTRF-V----TRKALKLGFKPIVVVNKIDRSNA 1052 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~------ev~~~l~~aD~ailVVDa~~G~~~qt~~-~----~~~~~~~glp~IvviNKiD~~~a 1052 (1527)
++.+.||||||..++.. .+..++.. +.+++++|+.....+.... . +......++|.++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 36899999999877532 22234455 8999999998766554422 1 12233458999999999998653
Q ss_pred ChhhhHHHHHHHHh-------hhc----------------ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1053 RPEWVVDATFDLFD-------KLC----------------ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1053 ~~~~v~~~~~~~~~-------~l~----------------~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
.. .+++.+.+. .+. ........|++++||++|. |+++|+++|.+
T Consensus 187 ~~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~----------gi~~l~~~i~~ 253 (262)
T 1yrb_A 187 EE---KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE----------GFEDLETLAYE 253 (262)
T ss_dssp HH---HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT----------THHHHHHHHHH
T ss_pred cc---HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc----------cHHHHHHHHHH
Confidence 21 111111111 100 0011112478999999998 99999999988
Q ss_pred hcC
Q psy1758 1110 YVP 1112 (1527)
Q Consensus 1110 ~lp 1112 (1527)
.++
T Consensus 254 ~~~ 256 (262)
T 1yrb_A 254 HYC 256 (262)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 405
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.85 E-value=2.4e-09 Score=127.22 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=88.2
Q ss_pred EEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-----------cHHHHHHHHHHHH----cC
Q psy1758 104 QHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-----------MPQTREAIAHAKI----SG 168 (1527)
Q Consensus 104 ~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-----------~~qt~e~i~~~~~----~~ 168 (1527)
..+....+..++..+.+|||+||+.|...+..+++.++++|+|+|+++.. ...+..++..+.. .+
T Consensus 181 ~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~ 260 (353)
T 1cip_A 181 TGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 260 (353)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred eceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC
Confidence 33445567778889999999999999999999999999999999999721 2344444444432 47
Q ss_pred CCEEEEEEcccCCcc------------------hhHHHHHHHhhh--cccccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 169 VPLIVAINKIDKLDI------------------NLDRIKQDLISE--QVIPEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 169 vpiIvviNKiDl~~~------------------~~~~~~~~l~~~--~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
+|+||++||+|+... +.++....+... ..........++++++||++|.||.++|+++..
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 899999999998531 112222211111 000000123468999999999999999999975
Q ss_pred HH
Q psy1758 229 QA 230 (1527)
Q Consensus 229 ~~ 230 (1527)
..
T Consensus 341 ~i 342 (353)
T 1cip_A 341 VI 342 (353)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 406
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.83 E-value=1.4e-09 Score=134.50 Aligned_cols=176 Identities=16% Similarity=0.131 Sum_probs=98.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccc-cccccc-----eecch-hhhhcccceeEeeeeE-------------E
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRK-NQNINA-----RIMDS-NEIEKERGITIFSKNC-------------S 979 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~-~~~~~~-----~~~D~-~~~E~erGiTi~~~~~-------------~ 979 (1527)
.+.++|+|+|++|+|||||+++|......-.+ ...+.. ...|. .......|+++..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999854211000 000000 00011 1112233454433211 1
Q ss_pred EEecCeEEEEEeCCCCCC----chHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCC
Q psy1758 980 IEYNGTRINIIDTPGHAD----FGGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA 1052 (1527)
Q Consensus 980 ~~~~~~~iniiDTPGh~d----f~~ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a 1052 (1527)
+.|+++.+.||||||... +..++..... .+|.+++||||..|.. ....+....+ .+|+ ++|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc-
Confidence 234788999999999764 3444443332 7899999999998753 2222333322 2675 89999999863
Q ss_pred ChhhhHHHHHHHHhh----h--ccccc--ccCCcEEEeccccCCcCCCcccccCC-ChhHHHHHHhh
Q psy1758 1053 RPEWVVDATFDLFDK----L--CATEE--QLDFPVIYTSALHGYANENSKARQGN-MIPLFEAILKY 1110 (1527)
Q Consensus 1053 ~~~~v~~~~~~~~~~----l--~~~~~--~~~~pvi~~SA~~g~~~~~~~~~~~g-i~~Ll~~i~~~ 1110 (1527)
+....++ +...+.. + +.... ....|..++|++.|. | +..|++.+.+.
T Consensus 255 ~~g~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~----------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGGALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGM----------GDIEGLIDKVNEL 310 (504)
T ss_dssp CCTHHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTT----------TTTTTTHHHHTTT
T ss_pred chHHHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCC----------CcHHHHHHHHHHH
Confidence 3333333 2222210 0 00000 001245667888886 7 89999999765
No 407
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.82 E-value=9e-09 Score=122.81 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=57.1
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEE---------------------
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE--------------------- 981 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~--------------------- 981 (1527)
.+|+|+|++|+|||||+++|++....+... ++.|+.+..+.+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~----------------p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~ 65 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANY----------------PFATIDKNVGVVPLEDERLYALQRTFAKGERVPP 65 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSC----------------CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCC----------------CCceeccceeeEecChHHHHHHHHHhcccccccc
Confidence 469999999999999999998763211111 1112222222221
Q ss_pred ecCeEEEEEeCCCCCCc-------hHHHHHHHHhcCEEEEEEeCCC
Q psy1758 982 YNGTRINIIDTPGHADF-------GGEVERILSMVDNVLLLIDAVE 1020 (1527)
Q Consensus 982 ~~~~~iniiDTPGh~df-------~~ev~~~l~~aD~ailVVDa~~ 1020 (1527)
+.+..++||||||+.++ .......++.+|++++|+|+++
T Consensus 66 ~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 66 VVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 23568999999998765 3456677899999999999986
No 408
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.81 E-value=1.2e-09 Score=127.60 Aligned_cols=134 Identities=21% Similarity=0.199 Sum_probs=92.3
Q ss_pred HHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHH-HHH
Q psy1758 84 SLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQT-REA 160 (1527)
Q Consensus 84 SLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt-~e~ 160 (1527)
+|+.++....|. ..+.+++..++. ..+..+ .++.+||| |++|..++..+++.+|++|+|+|+++.. .... ..+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~-~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~ 107 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDET-GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKF 107 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCS-SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCC-CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHH
Confidence 677777777776 556666653332 222222 37999999 9999999999999999999999999854 3332 233
Q ss_pred HHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHH
Q psy1758 161 IAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 161 i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
+..+...++|+++|+||+|+.+.........+... +....+++++||++|.|++++|+.+.
T Consensus 108 l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~------~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 108 LVLAEKNELETVMVINKMDLYDEDDLRKVRELEEI------YSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHH------HTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHH------HhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 34455578999999999999763221111111111 11005899999999999999998774
No 409
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.78 E-value=1.7e-09 Score=128.14 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=67.6
Q ss_pred EecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCCh--hhhH
Q psy1758 981 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP--EWVV 1058 (1527)
Q Consensus 981 ~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~--~~v~ 1058 (1527)
.+.++.+.||||||..+-.. .....+|.+++|+|+..+...+. +.... ..++.++++||+|+..... ....
T Consensus 144 ~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 144 EAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp HHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTTCCHHHHHHHH
T ss_pred hcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhccCchhHHHHHH
Confidence 34688999999999865332 23578999999999875422110 00001 1346788899999743211 1112
Q ss_pred HHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1059 DATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1059 ~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+++...+..+.........|++++||++|. |++.|++.|.+..+
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~----------gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGK----------GLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 222222211111000112478999999998 99999999887664
No 410
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.75 E-value=9.3e-09 Score=122.60 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=78.8
Q ss_pred EEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-----------cHHHHHHHHHHHH----cCC
Q psy1758 105 HIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-----------MPQTREAIAHAKI----SGV 169 (1527)
Q Consensus 105 ~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-----------~~qt~e~i~~~~~----~~v 169 (1527)
.+....+..++..+.+|||||++.|...+..+++.++++|+|+|+++-. ......++..+.. .++
T Consensus 190 Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~ 269 (362)
T 1zcb_A 190 GIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 269 (362)
T ss_dssp SEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred ceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence 3444566778889999999999999999999999999999999999721 2233334443322 468
Q ss_pred CEEEEEEcccCCcc-------------------hhHHHHHHHhhhc-cccccc-CCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 170 PLIVAINKIDKLDI-------------------NLDRIKQDLISEQ-VIPEEY-GGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 170 piIvviNKiDl~~~-------------------~~~~~~~~l~~~~-~~~~~~-~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
|+|+++||+|+... +.++....+.... ...... ...+.++++||+++.||+++|+++..
T Consensus 270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 99999999998531 1112211111100 000100 23467899999999999999999975
Q ss_pred HH
Q psy1758 229 QA 230 (1527)
Q Consensus 229 ~~ 230 (1527)
..
T Consensus 350 ~i 351 (362)
T 1zcb_A 350 TI 351 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 411
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.72 E-value=1.2e-08 Score=120.87 Aligned_cols=157 Identities=21% Similarity=0.211 Sum_probs=87.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHc------ccc-ccccCCce-----------------eEEEEEEE------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRK------TNV-VFSEAGGI-----------------TQHIGAYN------------ 110 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~------~~~-~~~~~~gi-----------------T~~~~~~~------------ 110 (1527)
.++..|+|+|++|+|||||++.|.+ ..+ ..+..++. .++...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999973 222 11111100 01111111
Q ss_pred ----------EEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccC
Q psy1758 111 ----------VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180 (1527)
Q Consensus 111 ----------~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl 180 (1527)
+...+..+.|+||||...-.. .....+|.+++|+|+..+...+. +.. .....|.++++||+|+
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~---i~~-~i~~~~~ivvlNK~Dl 205 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG---IKK-GIFELADMIAVNKADD 205 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC---------CCT-THHHHCSEEEEECCST
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH---HHH-HHhccccEEEEEchhc
Confidence 123567899999999432111 12368899999999865321111 000 0012466788899997
Q ss_pred Ccchh--HHHHHHHhhhcccccc--cCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 181 LDINL--DRIKQDLISEQVIPEE--YGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 181 ~~~~~--~~~~~~l~~~~~~~~~--~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
..... ....+.+......... .....+++++||++|.|+++|++.|....
T Consensus 206 ~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 206 GDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 54211 1112222211111110 00124799999999999999999997653
No 412
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.69 E-value=3.7e-08 Score=115.37 Aligned_cols=124 Identities=12% Similarity=0.092 Sum_probs=85.3
Q ss_pred EEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC-------CCC----cHHHHHHHHHHHH----cCCC
Q psy1758 106 IGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD-------DGV----MPQTREAIAHAKI----SGVP 170 (1527)
Q Consensus 106 ~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~-------~g~----~~qt~e~i~~~~~----~~vp 170 (1527)
+....+..++.++.+|||+||+.|...+..+++.++++|+|+|.+ +.. ...+...+..+.. .++|
T Consensus 157 i~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 157 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 455667778889999999999999999999999999999999876 211 2234444444432 4689
Q ss_pred EEEEEEcccCCcc-------------------hhHHHHHHHhhhcc-cccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 171 LIVAINKIDKLDI-------------------NLDRIKQDLISEQV-IPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 171 iIvviNKiDl~~~-------------------~~~~~~~~l~~~~~-~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
+++++||+|+... +.++....+..... ....-...+.++++||+++.||+.+|+.+...
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 9999999998642 11222211111100 00011233578899999999999999999754
No 413
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.66 E-value=3.1e-08 Score=120.04 Aligned_cols=164 Identities=17% Similarity=0.178 Sum_probs=74.3
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~ 1000 (1527)
.+|+|+|++|+|||||+++|++........+.. ..+. ...+.+......+...+ ..+++|||||..++..
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~---~~~~-----~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~ 103 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP---SHRI-----KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD 103 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC---C----------CCEEEEEECC------CEEEEEEECC-------
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCc---ccCC-----ccceeeeeEEEEEecCCcccceeeeechhhhhhcc
Confidence 468999999999999999998653211111000 0000 00011111111111122 3689999999877532
Q ss_pred ------HH--------HHHH-------------HhcCEEEEEEeCC-CCCChhHHHHHHHHHHcCCccEEEEeccCCCCC
Q psy1758 1001 ------EV--------ERIL-------------SMVDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 1052 (1527)
Q Consensus 1001 ------ev--------~~~l-------------~~aD~ailVVDa~-~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a 1052 (1527)
.+ ..++ ..++++|++++++ .+..+....++..+. .++|+|+|+||+|+...
T Consensus 104 ~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 104 NSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp ----CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-TTSEEEEEEESTTSSCH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-ccCcEEEEEEcccCccH
Confidence 11 1111 1244577777776 688887766666554 48999999999998642
Q ss_pred C-hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1053 R-PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1053 ~-~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+ .....+++.+.+.. ..++++.+||+++. ++..++..+.+.+|
T Consensus 183 ~ev~~~k~~i~~~~~~-------~~i~~~~~sa~~~~----------~v~~~~~~l~~~iP 226 (418)
T 2qag_C 183 EECQQFKKQIMKEIQE-------HKIKIYEFPETDDE----------EENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHH-------HTCCCCCCC---------------------------CC
T ss_pred HHHHHHHHHHHHHHHH-------cCCeEEeCCCCCCc----------CHHHHHHHHHhhCC
Confidence 1 11111233332221 24568889999886 66667777665554
No 414
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.62 E-value=5e-08 Score=113.82 Aligned_cols=163 Identities=18% Similarity=0.257 Sum_probs=76.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCC-----
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGH----- 995 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh----- 995 (1527)
.+|+++|+.|+|||||+++|.... .....+ +. .+..+.. +++.+......+... ...+++|||||+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~-~~~~~g-i~---~~g~~~~--~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~ 91 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTD-LYPERV-IS---GAAEKIE--RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN 91 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---CCEEEEEEEEC-------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-ccCCCC-cc---cCCcccC--CcceEeeEEEEecCCCcccCcchhhhhhhhhhcC
Confidence 578999999999999999987531 111111 00 0000000 011111111112212 357899999998
Q ss_pred --CCchHHHH-------HHHHhc-------------CEEEEEEeCCC-CCChhHHHHHHHHHHcCCccEEEEeccCCCCC
Q psy1758 996 --ADFGGEVE-------RILSMV-------------DNVLLLIDAVE-GPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 1052 (1527)
Q Consensus 996 --~df~~ev~-------~~l~~a-------------D~ailVVDa~~-G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a 1052 (1527)
..|...+. ..++.+ ++++++++.+. |..+.....++.+. .+.|+++|+||.|+...
T Consensus 92 ~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 92 CRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCH
Confidence 44443333 444433 33666666554 57776655554443 36789999999998652
Q ss_pred Ch-hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1053 RP-EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1053 ~~-~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+. ....+++.+... ...++++.+||++| |++++++.+.+.+
T Consensus 171 ~e~~~~~~~~~~~~~-------~~~~~~~e~Sa~~~-----------~v~e~f~~l~~~i 212 (301)
T 2qnr_A 171 KERERLKKRILDEIE-------EHNIKIYHLPDAES-----------DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHHHHH-------HTTCCCCCCC--------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HcCCeEEecCCccc-----------cccHHHHHHHHHh
Confidence 21 111223333222 12457899999998 4556666665555
No 415
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.61 E-value=4.7e-08 Score=120.91 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=89.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHH------ccccc-ccc---CC-------------ceeEEEEEE-------------E
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIR------KTNVV-FSE---AG-------------GITQHIGAY-------------N 110 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~------~~~~~-~~~---~~-------------giT~~~~~~-------------~ 110 (1527)
.++.+|+++|++|+|||||+++|. +.++. +.. .+ ++....... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999997 33221 100 00 111100000 0
Q ss_pred EEeCCeEEEEEeCCChh----hHHHHHHhh--ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCE-EEEEEcccCCcc
Q psy1758 111 VVTNHGSITFLDTPGHE----AFTAMRARG--AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPL-IVAINKIDKLDI 183 (1527)
Q Consensus 111 ~~~~~~~i~~iDTPG~e----~f~~~~~~~--~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpi-IvviNKiDl~~~ 183 (1527)
+.+.+..+.||||||.. .+....... +..+|.+++|+|+..+.. ....+..+... +|+ ++|+||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccc
Confidence 01256789999999953 232222211 237899999999998753 23333333332 785 899999998642
Q ss_pred hhHHHHHHHhhhcc---------cccccCCCCcEEEeeccCCCC-hhHHHHHHH
Q psy1758 184 NLDRIKQDLISEQV---------IPEEYGGASPFISISAKTGVG-INKLLENIS 227 (1527)
Q Consensus 184 ~~~~~~~~l~~~~~---------~~~~~~~~~~v~~iSAktg~g-I~eL~~~l~ 227 (1527)
. ............ ....+..+.|.+.+|+.+|.| +++|++.+.
T Consensus 256 ~-g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~ 308 (504)
T 2j37_W 256 G-GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVN 308 (504)
T ss_dssp C-THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHT
T ss_pred h-HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHH
Confidence 2 111111111100 011112234667789999999 999999885
No 416
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.59 E-value=4.5e-08 Score=107.34 Aligned_cols=85 Identities=28% Similarity=0.447 Sum_probs=70.0
Q ss_pred CCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--e
Q psy1758 1118 SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--T 1195 (1527)
Q Consensus 1118 ~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~ 1195 (1527)
.++||+|+|.+++. +.|++..|||.+|++++||.|.++|. + ...+|.+|+.+. .++++|.|||+|++ .
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~--~--~~~~V~~I~~~~----~~~~~A~aGd~V~l~L~ 72 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPN--K--HNVEVLGILSDD----VETDTVAPGENLKIRLK 72 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTT--T--EEEEEEEECSSS----SCBSEECTTSEEEEEEE
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCC--C--CEEEEEEEEECC----EEeEEECCCCEEEEEEc
Confidence 47899999999965 68999999999999999999999876 3 467899987764 57999999999987 7
Q ss_pred cce--ecccCCeeeCCCCC
Q psy1758 1196 GIE--EICIGSTICDPSKP 1212 (1527)
Q Consensus 1196 gl~--~~~iGdTi~~~~~~ 1212 (1527)
|++ ++..||+||+++++
T Consensus 73 gi~~~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 73 GIEEEEILPGFILCDPNNL 91 (204)
T ss_dssp ESSSSCCCTTCEEBCSSSC
T ss_pred CCCHHHCccceEEECCCCC
Confidence 775 68889999998764
No 417
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.59 E-value=4.1e-08 Score=117.91 Aligned_cols=125 Identities=11% Similarity=0.050 Sum_probs=83.4
Q ss_pred EEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC----------CC-cHHHHHHHHHHHH----cCC
Q psy1758 105 HIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD----------GV-MPQTREAIAHAKI----SGV 169 (1527)
Q Consensus 105 ~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~----------g~-~~qt~e~i~~~~~----~~v 169 (1527)
.+....+..++..+.+|||+|++.|...+..+++.++++|+|+|+++ .- ...+..++..+.. .++
T Consensus 206 Gi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~ 285 (402)
T 1azs_C 206 GIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 285 (402)
T ss_dssp SEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSC
T ss_pred eeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCC
Confidence 33445667788899999999999999999999999999999999997 11 2233344444332 368
Q ss_pred CEEEEEEcccCCcchhH--------------------------------HHHHHHhhhccccc-----ccCCCCcEEEee
Q psy1758 170 PLIVAINKIDKLDINLD--------------------------------RIKQDLISEQVIPE-----EYGGASPFISIS 212 (1527)
Q Consensus 170 piIvviNKiDl~~~~~~--------------------------------~~~~~l~~~~~~~~-----~~~~~~~v~~iS 212 (1527)
|++||+||+|+...... .............. .-...+.++++|
T Consensus 286 piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TS 365 (402)
T 1azs_C 286 SVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTC 365 (402)
T ss_dssp CEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECC
T ss_pred eEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEE
Confidence 99999999998532110 00000000000000 001235678999
Q ss_pred ccCCCChhHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQ 229 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~ 229 (1527)
|+++.||+++|+.+...
T Consensus 366 A~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 366 AVDTENIRRVFNDCRDI 382 (402)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred eecCcCHHHHHHHHHHH
Confidence 99999999999998643
No 418
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.56 E-value=3.5e-08 Score=118.10 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=54.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC-----------------eEEEEEeCCChhhH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-----------------GSITFLDTPGHEAF 129 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-----------------~~i~~iDTPG~e~f 129 (1527)
..+.+|+++|.+|+|||||+|+|++..+..+..+++|++.....+.+.+ ..+.||||||...+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 4567899999999999999999999888778888999888777776654 24999999998776
Q ss_pred HH-------HHHhhccccCEEEEEEeCCC
Q psy1758 130 TA-------MRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 130 ~~-------~~~~~~~~aD~~IlVvda~~ 151 (1527)
.. ....+++.+|++++|+|+.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 54 34567789999999999986
No 419
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.54 E-value=2.1e-08 Score=119.10 Aligned_cols=116 Identities=11% Similarity=0.097 Sum_probs=75.9
Q ss_pred CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC----------CC-CcHHHHHHHHHHHH----cCCCEEEEEEccc
Q psy1758 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD----------DG-VMPQTREAIAHAKI----SGVPLIVAINKID 179 (1527)
Q Consensus 115 ~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~----------~g-~~~qt~e~i~~~~~----~~vpiIvviNKiD 179 (1527)
...+.+|||+|++.|..++..+++.++++|+|+|.+ +. -...+...+..+.. .++|++||+||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 357999999999999999999999999999999997 21 12333444444332 4689999999999
Q ss_pred CCcchh------------------------HHHHHHHhhhcc-c------ccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 180 KLDINL------------------------DRIKQDLISEQV-I------PEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 180 l~~~~~------------------------~~~~~~l~~~~~-~------~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
+..... ++.......... . .........++++||+++.||+++|+.+..
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 853211 001000010000 0 000012345789999999999999999975
Q ss_pred HH
Q psy1758 229 QA 230 (1527)
Q Consensus 229 ~~ 230 (1527)
..
T Consensus 342 ~I 343 (354)
T 2xtz_A 342 TL 343 (354)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 420
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.54 E-value=4.1e-08 Score=116.68 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=96.4
Q ss_pred cceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-----------CChhHHHHHHHHHH--
Q psy1758 969 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-----------PMPQTRFVTRKALK-- 1035 (1527)
Q Consensus 969 rGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-----------~~~qt~~~~~~~~~-- 1035 (1527)
+..|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++- -+......|.....
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 34455555567888899999999999999999999999999999999999862 12334444554443
Q ss_pred --cCCccEEEEeccCCCC------------------CChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc
Q psy1758 1036 --LGFKPIVVVNKIDRSN------------------ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 1095 (1527)
Q Consensus 1036 --~glp~IvviNKiD~~~------------------a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~ 1095 (1527)
.+.|+|+|.||+|+.. .+.++..+.+...|..+........++++.+||++|.
T Consensus 257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~------- 329 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK------- 329 (353)
T ss_dssp GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH-------
T ss_pred cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch-------
Confidence 3689999999999842 2344444445555544433212345678999999998
Q ss_pred ccCCChhHHHHHHhhc
Q psy1758 1096 RQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1096 ~~~gi~~Ll~~i~~~l 1111 (1527)
|+..+|+++.+.+
T Consensus 330 ---nV~~vF~~v~~~i 342 (353)
T 1cip_A 330 ---NVQFVFDAVTDVI 342 (353)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHH
Confidence 8999999887765
No 421
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.53 E-value=8.3e-08 Score=106.66 Aligned_cols=168 Identities=18% Similarity=0.201 Sum_probs=91.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc---eecchhhhhcc--cceeEeee-eEE------------EEe
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA---RIMDSNEIEKE--RGITIFSK-NCS------------IEY 982 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~---~~~D~~~~E~e--rGiTi~~~-~~~------------~~~ 982 (1527)
+.++|+|+|++|+|||||+++|+.....-.+...+.. ...|....+.. .-+.+... ... +.+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4579999999999999999999976321111111110 01122112111 11111100 000 011
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
.+..+.++||||....... .-...+..+.|+|+..+...... .....+.|.++|+||+|+.+.+ +...+++.
T Consensus 117 ~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~~ 188 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLADAV-GADIKKME 188 (226)
T ss_dssp GGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHHHH-TCCHHHHH
T ss_pred CCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCchh-HHHHHHHH
Confidence 2347899999995321110 01234677888997654322211 1122478999999999985321 01123333
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+..+. ...|++++||++|. |+++|++.+.+.+
T Consensus 189 ~~~~~~~-----~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 189 NDAKRIN-----PDAEVVLLSLKTME----------GFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHC-----TTSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHHhC-----CCCeEEEEEecCCC----------CHHHHHHHHHHHH
Confidence 3332221 13579999999998 9999999987765
No 422
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=98.52 E-value=1.1e-07 Score=115.09 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=84.0
Q ss_pred CCCcEEEEEEEECccccCCCCcccEEeecCCCCCCHHHHHHHHHhccc-cccccCccccccccCChhhHHHHhcCCcccc
Q psy1758 722 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHG-KISQIPPMYSALKYKGIPLYKYARSGITIKR 800 (1527)
Q Consensus 722 ~~~K~Y~~~~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g-~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~ 800 (1527)
...|+|+|.+.+. .+++.++++++.. |.| .|.|.||.-++.+ +..
T Consensus 410 ~~~K~Y~alv~~~------------------~~v~~e~l~~~~~-l~~l~I~QrtP~RV~hR---------------R~~ 455 (530)
T 2v9k_A 410 EKTKTYSALIWTN------------------KAIQKKDIEFLND-IKDLKIDQKTPLRVLHR---------------RPL 455 (530)
T ss_dssp HCCEEEEEEEEES------------------SCCCHHHHGGGGG-CCSEEEEEECCGGGTTT---------------SCC
T ss_pred cCCeEEEEEEEEc------------------CCCCHHHHHHHHh-cCCceeeccCCeEEEEe---------------cCC
Confidence 5689999999973 2467899987766 999 9999999999941 223
Q ss_pred cceeEEEEEEEEEEEeCCeEEEEEEecccccHHHHHH-H-------HHHHhCChhhhHHH
Q psy1758 801 KLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSE-D-------IGKMLGCGAHLKYL 852 (1527)
Q Consensus 801 ~~r~~~i~~~~~~~~~~~~~~~~v~cs~gtYirsl~~-d-------ig~~l~~~a~~~~L 852 (1527)
..|..+||++++...+...|.|++.|+.|||||-|+| | ||..||++|+|.+|
T Consensus 456 ~~R~R~I~~i~~~~~~~~~~~l~i~~eaGtYIKelvhGD~GRT~Psl~~lLg~~a~i~eL 515 (530)
T 2v9k_A 456 AVRARVIHFMETQYVDEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILEL 515 (530)
T ss_dssp CEEEEEEEEEEEEEEETTEEEEEEEECTTCCHHHHHHCTTTTEESCHHHHHTSCEEEEEE
T ss_pred CccceEEEEEEEEEecCCEEEEEEEecCCCEEEEEEcCCCCCcCCcHHHHhCCCcEEEEe
Confidence 3499999999999999999999999999999999999 7 99999999988765
No 423
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.43 E-value=1.2e-07 Score=112.97 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=85.9
Q ss_pred ceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-----------CChhHHHHHHHHHH---
Q psy1758 970 GITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-----------PMPQTRFVTRKALK--- 1035 (1527)
Q Consensus 970 GiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-----------~~~qt~~~~~~~~~--- 1035 (1527)
..|+......+.+++..+.||||||+..|...+..++..++++|+|+|.++- -+......|.....
T Consensus 186 ~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 3344444567888899999999999999999888889999999999999872 12233444544443
Q ss_pred -cCCccEEEEeccCCCC-------------------CChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc
Q psy1758 1036 -LGFKPIVVVNKIDRSN-------------------ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 1095 (1527)
Q Consensus 1036 -~glp~IvviNKiD~~~-------------------a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~ 1095 (1527)
.+.|+|+|+||+|+.. .+.++..+.+...|..+........++++++||++|.
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~------- 338 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE------- 338 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH-------
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch-------
Confidence 3689999999999742 2334444444444444433111335678999999998
Q ss_pred ccCCChhHHHHHHhhc
Q psy1758 1096 RQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1096 ~~~gi~~Ll~~i~~~l 1111 (1527)
|+..+|+++.+.+
T Consensus 339 ---nV~~vF~~v~~~i 351 (362)
T 1zcb_A 339 ---NIRLVFRDVKDTI 351 (362)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHH
Confidence 8999998887654
No 424
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.41 E-value=1e-08 Score=123.06 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=75.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc------ccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH-------HHHHh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT------NVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT-------AMRAR 135 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~------~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~-------~~~~~ 135 (1527)
..+|+++|.+|+|||||+|+|.+. ....+..+|+|++...+.+ + ..+.++||||-.... .....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 457999999999999999999886 4567788899988766543 2 238999999932111 01111
Q ss_pred hc---cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc
Q psy1758 136 GA---KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 136 ~~---~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~ 183 (1527)
.+ ...|.+++++++...........+..+...+.|+++++||+|....
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred HHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccc
Confidence 12 6679999999985321111111122334457899999999998753
No 425
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.37 E-value=1.5e-08 Score=121.38 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=71.3
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc-------ccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh-------HHH-HH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT-------NVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA-------FTA-MR 133 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~-------~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~-------f~~-~~ 133 (1527)
..+|+++|.+|+|||||+|+|.+. ....+..+|+|.+...+.+ .. .+.++||||-.. +.. ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~~-~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL--DE-ESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES--SS-SCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe--cC-CeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 467999999999999999999875 2346778899987766543 22 389999999321 111 11
Q ss_pred Hhh--ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch
Q psy1758 134 ARG--AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN 184 (1527)
Q Consensus 134 ~~~--~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~ 184 (1527)
... ....+.+++++++...........+..+...+.|+++++||+|.....
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccc
Confidence 111 366788999998853211111111222344578999999999987643
No 426
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.34 E-value=9e-07 Score=106.80 Aligned_cols=144 Identities=14% Similarity=0.170 Sum_probs=80.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
.+.+++|+|++|+|||||++.|++.. +... . + ....++.+.......+...+ ..++++|+||..+.
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~--l~g~-~----~-----~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK--FEGE-P----A-----THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC--C-----------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc--ccCC-c----C-----CCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 44679999999999999999998652 1000 0 0 00012223221111122222 26899999997653
Q ss_pred h--------------HHHHHHHHh---------------cC-EEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccC
Q psy1758 999 G--------------GEVERILSM---------------VD-NVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKID 1048 (1527)
Q Consensus 999 ~--------------~ev~~~l~~---------------aD-~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD 1048 (1527)
. ..+..++.. +| ++++++|+.++..+....+++.+. .+.|+|+|+||+|
T Consensus 109 ~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD 187 (427)
T 2qag_B 109 INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKAD 187 (427)
T ss_dssp CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGG
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchh
Confidence 1 112222211 12 477788999998888877766665 7899999999999
Q ss_pred CCCCChhhhHHHHHHHHhh-hcccccccCCcEEEecc
Q psy1758 1049 RSNARPEWVVDATFDLFDK-LCATEEQLDFPVIYTSA 1084 (1527)
Q Consensus 1049 ~~~a~~~~v~~~~~~~~~~-l~~~~~~~~~pvi~~SA 1084 (1527)
.... .+ +..+...+.. +.. .+++++++|.
T Consensus 188 ~Lt~--~E-~~~l~~~I~~~L~~----~gi~I~~is~ 217 (427)
T 2qag_B 188 AISK--SE-LTKFKIKITSELVS----NGVQIYQFPT 217 (427)
T ss_dssp GSCH--HH-HHHHHHHHHHHHBT----TBCCCCCCC-
T ss_pred ccch--HH-HHHHHHHHHHHHHH----cCCcEEecCC
Confidence 8642 22 2333333322 322 2457788874
No 427
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.27 E-value=4.1e-07 Score=108.89 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=51.6
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-----------------e
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----------------T 985 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----------------~ 985 (1527)
.+|+|+|.+|+|||||+++|+.... .....+++|+.+....+.+.+ .
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~----------------~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~ 86 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA----------------SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPA 86 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc----------------cccCCCccccCceeEEEEECCccceeeccccCccccccc
Confidence 5799999999999999999986521 112334566666666665543 3
Q ss_pred EEEEEeCCCCCCchH-------HHHHHHHhcCEEEEEEeCCC
Q psy1758 986 RINIIDTPGHADFGG-------EVERILSMVDNVLLLIDAVE 1020 (1527)
Q Consensus 986 ~iniiDTPGh~df~~-------ev~~~l~~aD~ailVVDa~~ 1020 (1527)
.+.+|||||+..+.. .+...++.+|++++|||+++
T Consensus 87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 599999999887554 56677899999999999975
No 428
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.23 E-value=9.8e-07 Score=105.88 Aligned_cols=86 Identities=19% Similarity=0.118 Sum_probs=70.2
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCC-----------------eEEEEEeCCCh-
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNH-----------------GSITFLDTPGH- 126 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~-----------------~~i~~iDTPG~- 126 (1527)
..++.+|+++|++|+|||||+|+|++... ..+..|++|++.....+...+ ..+.+|||||.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34567999999999999999999999887 788889999988887777765 46899999993
Q ss_pred ------hhHHHHHHhhccccCEEEEEEeCCC
Q psy1758 127 ------EAFTAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 127 ------e~f~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
+.+.......++.+|.++.|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2233344556788999999999976
No 429
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.23 E-value=3.2e-06 Score=102.09 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=70.6
Q ss_pred EEEEecCCCChhHHHHHHHccccc----cccCCceeEEEEEEEEEeCC--eEEEEEeCCChhh-----------------
Q psy1758 72 VTIMGHVDHGKTSLLDYIRKTNVV----FSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEA----------------- 128 (1527)
Q Consensus 72 V~IvG~~~~GKTSLl~~L~~~~~~----~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~----------------- 128 (1527)
++|+|++|+|||||++.|.+..+. ....++.++....+.+...+ ..++++|+||...
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~ 124 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA 124 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHH
Confidence 999999999999999999887532 11123445543333333333 2689999998321
Q ss_pred -HHHHHHhh--c-------ccc--C-EEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc
Q psy1758 129 -FTAMRARG--A-------KVT--D-IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 129 -f~~~~~~~--~-------~~a--D-~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~ 183 (1527)
|....... . ..+ | ++++++|+..+..+...+.++.+. .++|+|+|+||+|....
T Consensus 125 q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 125 QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccch
Confidence 11111111 1 122 3 467788888888888888888776 78999999999998763
No 430
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.22 E-value=2.3e-06 Score=92.38 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=89.5
Q ss_pred cCCCEEEEEecC-CCChhHHHHHHHccc--ccc---------ccCCceeEEEEE---EEE-E-e-------C--------
Q psy1758 67 VRAPIVTIMGHV-DHGKTSLLDYIRKTN--VVF---------SEAGGITQHIGA---YNV-V-T-------N-------- 114 (1527)
Q Consensus 67 ~r~~~V~IvG~~-~~GKTSLl~~L~~~~--~~~---------~~~~giT~~~~~---~~~-~-~-------~-------- 114 (1527)
...|++++.|+. ..=+.+|+.++.... +.+ +--+|++..+.. +++ + | +
T Consensus 14 ~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~~ 93 (227)
T 3l82_B 14 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS 93 (227)
T ss_dssp CCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC--------------
T ss_pred CCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhhh
Confidence 456889999983 334458888886654 111 111244433221 111 0 0 0
Q ss_pred -CeEEEEEeCC------ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHH----HHH----cCCCEEEEEEcc-
Q psy1758 115 -HGSITFLDTP------GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAH----AKI----SGVPLIVAINKI- 178 (1527)
Q Consensus 115 -~~~i~~iDTP------G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~----~~~----~~vpiIvviNKi- 178 (1527)
..++..--+| ||+.++.+|..|+..+|++|+|||++|.......+.+.. +.. .++|++|+.||.
T Consensus 94 ~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqq 173 (227)
T 3l82_B 94 AVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQ 173 (227)
T ss_dssp -----------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESS
T ss_pred hhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCc
Confidence 0134445566 799999999999999999999999998533234444422 111 478999999995
Q ss_pred cCCcc-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 179 DKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 179 Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
|++.+ +..++.+.+.-... ...+.+.+|||++|+|+.+-++||..
T Consensus 174 Dlp~Ams~~EI~e~L~L~~l-----~R~W~Iq~csA~TGeGL~EGLdWL~~ 219 (227)
T 3l82_B 174 GDVKRMPCFYLAHELHLNLL-----NHPWLVQDTEAETLTGFLNGIEWILE 219 (227)
T ss_dssp TTSCBCCHHHHHHHTTGGGG-----CSCEEEEEEETTTCTTHHHHHHHHTT
T ss_pred CccCCCCHHHHHHHcCCcCC-----CCCEEEEEeECCCCcCHHHHHHHHHH
Confidence 77654 33444444332221 23458999999999999999999963
No 431
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.14 E-value=3.1e-06 Score=103.16 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=69.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--------ceecchhh-hhcccceeEeeee------------EE
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--------ARIMDSNE-IEKERGITIFSKN------------CS 979 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--------~~~~D~~~-~E~erGiTi~~~~------------~~ 979 (1527)
..++|+++|++|+||||++..|...... ....+. ....+... .....|+.+.... .-
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~--~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l 175 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK--RGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGM 175 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH--HHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHH
Confidence 3468999999999999999999864210 000000 00000000 0011122211110 00
Q ss_pred EEecCeEEEEEeCCCCCCchHHHHHHH------HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCC-c-cEEEEeccCCC
Q psy1758 980 IEYNGTRINIIDTPGHADFGGEVERIL------SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF-K-PIVVVNKIDRS 1050 (1527)
Q Consensus 980 ~~~~~~~iniiDTPGh~df~~ev~~~l------~~aD~ailVVDa~~G~~~qt~~~~~~~~~~gl-p-~IvviNKiD~~ 1050 (1527)
-.+.++.+.||||||...........+ ..+|.+++|+||..|. ........ ...++ | ..+|+||+|..
T Consensus 176 ~~~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~-~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 176 EKFKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKA-FKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp HTTSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHH-HHTTSCSCEEEEEECSSSC
T ss_pred HHhhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHH-HhhcccCCeEEEEeCCCCc
Confidence 012578899999999876544433332 2579999999998763 22222221 22346 7 67889999985
No 432
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.12 E-value=1.1e-05 Score=97.46 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=93.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc----ccc-CCceeEEEEEEEEEeCC-eEEEEEeCCChh----hHHH-HHHh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV----FSE-AGGITQHIGAYNVVTNH-GSITFLDTPGHE----AFTA-MRAR 135 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~----~~~-~~giT~~~~~~~~~~~~-~~i~~iDTPG~e----~f~~-~~~~ 135 (1527)
.+...++++|++|+|||||+|.|.+.... ... ...+|+. .+.+.... ..++++|+||.. .... +...
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~ 144 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM 144 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchHHHHHHHHHHc
Confidence 45668999999999999999999883211 100 0111221 11222222 268999999942 1211 2223
Q ss_pred hccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc----------hhHHHHHHHhhhccc-ccccC-
Q psy1758 136 GAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI----------NLDRIKQDLISEQVI-PEEYG- 203 (1527)
Q Consensus 136 ~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~----------~~~~~~~~l~~~~~~-~~~~~- 203 (1527)
++...|..++ +|... .+.|.......+...+.|+++|.||.|+.-. ...+....+...... ..+.+
T Consensus 145 ~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 145 KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455566555 77654 4677777778787889999999999997521 112222222211000 00111
Q ss_pred CCCcEEEeec--cCCCChhHHHHHHHH
Q psy1758 204 GASPFISISA--KTGVGINKLLENISL 228 (1527)
Q Consensus 204 ~~~~v~~iSA--ktg~gI~eL~~~l~~ 228 (1527)
....+|.+|+ .++.|+++|.+.+..
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHH
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHH
Confidence 1236899999 677789999999964
No 433
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.09 E-value=4.8e-06 Score=95.34 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=72.2
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch---
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG--- 999 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~--- 999 (1527)
.+++|+|+.|+|||||++.|++..... .+.+.-.-.+.......++++.......+ ...++++|+||..+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~~i~~~~~~~~i~~v~q~~~~---~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREEKIPKTVEIKAIGHVIEEGGV---KMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSBCT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCcccCcceeeeeeEEEeecCCC---cCCceEEechhhhhhcccH
Confidence 489999999999999999998752211 11110000000011112233322221111 1368999999965421
Q ss_pred ---HHHHH--------HH--------------HhcCEEEEEEeCC-CCCChhHHHHHHHHHHcCCccEEEEeccCCCCC
Q psy1758 1000 ---GEVER--------IL--------------SMVDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 1052 (1527)
Q Consensus 1000 ---~ev~~--------~l--------------~~aD~ailVVDa~-~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a 1052 (1527)
..+.. .+ ..+.++++++|.. +|..+.....++.+.+. +++|+|+||+|....
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTL 155 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCH
Confidence 11111 11 2258889999954 88999998888888776 999999999998653
No 434
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.08 E-value=1.3e-06 Score=102.65 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=93.7
Q ss_pred cceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCC-------C----CChhHHHHHHHHHH--
Q psy1758 969 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-------G----PMPQTRFVTRKALK-- 1035 (1527)
Q Consensus 969 rGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~-------G----~~~qt~~~~~~~~~-- 1035 (1527)
+..|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++ . -+......|.....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 5556666777888899999999999999999999999999999999999972 1 11233444544443
Q ss_pred --cCCccEEEEeccCCCC------------------CChhhhHHHHHHHH------hhhccccc----------ccCCcE
Q psy1758 1036 --LGFKPIVVVNKIDRSN------------------ARPEWVVDATFDLF------DKLCATEE----------QLDFPV 1079 (1527)
Q Consensus 1036 --~glp~IvviNKiD~~~------------------a~~~~v~~~~~~~~------~~l~~~~~----------~~~~pv 1079 (1527)
.++|+++|.||+|+.. .+.++..+.+...| ..+..... +..+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 3689999999999742 13445555566666 33322111 124678
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.++||+++. +++.+|+.+.+.+
T Consensus 305 h~TsA~dt~----------nv~~vF~~v~~~I 326 (340)
T 4fid_A 305 NPTNATDGS----------NIKRVFMLAVDVI 326 (340)
T ss_dssp EEECTTCHH----------HHHHHHHHHHHHH
T ss_pred EEEEeeCcH----------HHHHHHHHHHHHH
Confidence 899999987 8888887776654
No 435
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.07 E-value=1.9e-06 Score=100.94 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=96.3
Q ss_pred cceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCC-------CCC----ChhHHHHHHHHHH--
Q psy1758 969 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAV-------EGP----MPQTRFVTRKALK-- 1035 (1527)
Q Consensus 969 rGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~-------~G~----~~qt~~~~~~~~~-- 1035 (1527)
+..|+......+.+++.++.||||+|+..|...+..+++.++++|+|+|.+ +.. +......|.....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 555666667788899999999999999999999999999999999999765 221 1223344444433
Q ss_pred --cCCccEEEEeccCCCC-------------------CChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcc
Q psy1758 1036 --LGFKPIVVVNKIDRSN-------------------ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK 1094 (1527)
Q Consensus 1036 --~glp~IvviNKiD~~~-------------------a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~ 1094 (1527)
.+.|+++|.||+|+.. .+.++..+-+...|..+.. .....+.+.++||+++.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~-~~~~~i~~~~TsA~d~~------ 303 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNP-DSDKIIYSHFTCATDTE------ 303 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCT-TTTSCEEEEECCTTCHH------
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcc-cccCCcEEEEEEeecCH------
Confidence 3689999999999742 2445555566666655542 22345677889999998
Q ss_pred cccCCChhHHHHHHhhc
Q psy1758 1095 ARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1095 ~~~~gi~~Ll~~i~~~l 1111 (1527)
+++.+|+.+.+.+
T Consensus 304 ----nV~~vF~~v~~~I 316 (327)
T 3ohm_A 304 ----NIRFVFAAVKDTI 316 (327)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 8888888887655
No 436
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.06 E-value=1.5e-05 Score=96.27 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=96.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhc----cCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCC
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHA 996 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~----~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~ 996 (1527)
...++|+|++|+|||||++.|++. .|.+.-.+ .+..+ +|+ .+.... ..++++|+||..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g---------~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV---------VEVTM-ERH-------PYKHPNIPNVVFWDLPGIG 131 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------------C-CCE-------EEECSSCTTEEEEECCCGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC---------eecce-eEE-------eccccccCCeeehHhhccc
Confidence 348999999999999999999874 23322111 11111 122 111111 258999999964
Q ss_pred CchHHHHHHH-----HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC-------CCC---hhhhHHHH
Q psy1758 997 DFGGEVERIL-----SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-------NAR---PEWVVDAT 1061 (1527)
Q Consensus 997 df~~ev~~~l-----~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~-------~a~---~~~v~~~~ 1061 (1527)
.-...+..++ ...|..++ +|+.. .+.|-..+.+.+...+.|+++|+||.|.. +-| .+++.+.+
T Consensus 132 ~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 132 STNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 2111223332 33455554 78755 56777777777778899999999999863 112 23333333
Q ss_pred HHHHhh-hccccccc-CCcEEEecc--ccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1062 FDLFDK-LCATEEQL-DFPVIYTSA--LHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1062 ~~~~~~-l~~~~~~~-~~pvi~~SA--~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
++...+ +... .. .-.++++|+ +++. |++.|.+.+.+.+|.-
T Consensus 210 ~~l~~~~l~~~--g~~~~~iiliSsh~l~~~----------~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 210 RLNCVNTFREN--GIAEPPIFLLSNKNVCHY----------DFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHHT--TCSSCCEEECCTTCTTST----------THHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHhc--CCCCCcEEEEecCcCCcc----------CHHHHHHHHHHhCccc
Confidence 332210 0000 01 125788999 5665 7999999999999754
No 437
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.06 E-value=3.7e-06 Score=100.92 Aligned_cols=84 Identities=15% Similarity=0.243 Sum_probs=63.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-----------------
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG----------------- 984 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~----------------- 984 (1527)
..+|+|+|++|+|||||+++|++... ......+++|+.+..+.+.+.+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~---------------a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~ 84 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVL---------------GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVP 84 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTT---------------TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc---------------ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccC
Confidence 45899999999999999999987421 0122235566666666666654
Q ss_pred eEEEEEeCCCCCC-------chHHHHHHHHhcCEEEEEEeCCC
Q psy1758 985 TRINIIDTPGHAD-------FGGEVERILSMVDNVLLLIDAVE 1020 (1527)
Q Consensus 985 ~~iniiDTPGh~d-------f~~ev~~~l~~aD~ailVVDa~~ 1020 (1527)
..+.++||||... +.......++.+|++++|+|+.+
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5789999999644 45577788899999999999976
No 438
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.05 E-value=1.8e-06 Score=103.75 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=61.9
Q ss_pred cceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCC----------C-CChhHHHHHHHHHH--
Q psy1758 969 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE----------G-PMPQTRFVTRKALK-- 1035 (1527)
Q Consensus 969 rGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~----------G-~~~qt~~~~~~~~~-- 1035 (1527)
+..|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++ . -+......|.....
T Consensus 201 r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred ccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 3334444456778889999999999999999999999999999999999986 1 11233444444443
Q ss_pred --cCCccEEEEeccCCC
Q psy1758 1036 --LGFKPIVVVNKIDRS 1050 (1527)
Q Consensus 1036 --~glp~IvviNKiD~~ 1050 (1527)
.++|+|+|.||+|+.
T Consensus 281 ~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 281 WLRTISVILFLNKQDLL 297 (402)
T ss_dssp TCSSCCEEEEEECHHHH
T ss_pred cCCCCeEEEEEEChhhh
Confidence 368899999999974
No 439
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.04 E-value=2.9e-06 Score=98.94 Aligned_cols=97 Identities=22% Similarity=0.220 Sum_probs=67.1
Q ss_pred hhhHHHHHHhhccccCEEEEEEeCCCCC-cHHH-HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccC
Q psy1758 126 HEAFTAMRARGAKVTDIVVLVVAADDGV-MPQT-REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYG 203 (1527)
Q Consensus 126 ~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt-~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~ 203 (1527)
+++|..+...+++.+|++++|+|+++.. .... ..++..+...++|+++|+||+|+.+............ ....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~---~~~~~- 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWIS---IYRDA- 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHH---HHHHT-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHH---HHHHC-
Confidence 6777777777899999999999999854 4433 2344455668899999999999976321010111111 11112
Q ss_pred CCCcEEEeeccCCCChhHHHHHHH
Q psy1758 204 GASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 204 ~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
..+++++||++|.|+++|++.+.
T Consensus 142 -g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 -GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHTT
T ss_pred -CCeEEEEECCCCCCHHHHHhhcc
Confidence 24899999999999999998763
No 440
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.01 E-value=5e-06 Score=100.82 Aligned_cols=151 Identities=18% Similarity=0.224 Sum_probs=82.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecch--------h-hhhcccceeEeeee-------------E
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDS--------N-EIEKERGITIFSKN-------------C 978 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~--------~-~~E~erGiTi~~~~-------------~ 978 (1527)
..+.|+++|++|+||||++..|...... ....+.---.|. . ......|+.+.... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 3578999999999999999999743110 000000000000 0 00111233222111 0
Q ss_pred EEEecCeEEEEEeCCCCCC------chHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC
Q psy1758 979 SIEYNGTRINIIDTPGHAD------FGGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS 1050 (1527)
Q Consensus 979 ~~~~~~~~iniiDTPGh~d------f~~ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~ 1050 (1527)
.+.++++.+.||||||... +..++....+ ..|.++||+||..|.. .........+.--+..+|+||+|..
T Consensus 174 ~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc
Confidence 1123478899999999644 4445544333 3599999999987622 2222333332224567889999986
Q ss_pred CCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCc
Q psy1758 1051 NARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYA 1089 (1527)
Q Consensus 1051 ~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~ 1089 (1527)
++....+..... ...|+.|++. |+.
T Consensus 252 -a~~G~als~~~~-----------~g~Pi~fig~--Ge~ 276 (433)
T 3kl4_A 252 -AKGGGALSAVVA-----------TGATIKFIGT--GEK 276 (433)
T ss_dssp -SCHHHHHHHHHH-----------HTCEEEEEEC--CSS
T ss_pred -ccchHHHHHHHH-----------HCCCEEEEEC--CCC
Confidence 444333332221 2468888886 543
No 441
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.98 E-value=1.5e-05 Score=96.66 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=78.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchh---------hhhcccceeEeeeeE-------------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNC------------- 978 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~---------~~E~erGiTi~~~~~------------- 978 (1527)
+.+.|+++|++|+||||++..|...... +...+.-.-.|.. ......|+.+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~--~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK--RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 3578999999999999999999753110 0000000000100 111223443322110
Q ss_pred EEEecCeEEEEEeCCCCCCchHHHHH------HHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCC
Q psy1758 979 SIEYNGTRINIIDTPGHADFGGEVER------ILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSN 1051 (1527)
Q Consensus 979 ~~~~~~~~iniiDTPGh~df~~ev~~------~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~ 1051 (1527)
.+..+++.+.||||||......+... ....+|.++||+||..|- +.........+ .+++ .+|+||+|...
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~-~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKE-ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHH-SCTTEEEEEECCSSCS
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHh-hCCCeEEEEECCCCcc
Confidence 01124588999999996554333222 234579999999998752 22222222222 3444 58899999853
Q ss_pred CChhhhHHHHHHHHhhhcccccccCCcEEEecc
Q psy1758 1052 ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSA 1084 (1527)
Q Consensus 1052 a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA 1084 (1527)
.....+. +. .....|+.|++.
T Consensus 254 -~gG~~ls-~~----------~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALS-AV----------AATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHH-HH----------HTTCCCEEEEEC
T ss_pred -cccHHHH-HH----------HHHCCCEEEEEc
Confidence 2222211 11 113568998886
No 442
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.95 E-value=4.7e-06 Score=97.11 Aligned_cols=129 Identities=19% Similarity=0.145 Sum_probs=86.6
Q ss_pred EEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-Chh-HHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHH
Q psy1758 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQ-TRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFD 1063 (1527)
Q Consensus 986 ~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~q-t~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~ 1063 (1527)
+++|||| +..|......+++.+|++|+|+|+++.. ... ...++..+...++|+++|+||+|+.+.+ . ++++.+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~--~-v~~~~~ 138 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDED--D-LRKVRE 138 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH--H-HHHHHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCch--h-HHHHHH
Confidence 7899999 8888887778899999999999999754 222 2334445556789999999999996532 1 233333
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEe
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRI 1143 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV 1143 (1527)
...... .. ++++++||++|. |++++++.+.. . +.-+.-.++.|+-++.+.
T Consensus 139 ~~~~~~----~~-~~~~~~SAktg~----------gv~~lf~~l~g-----------e----iv~l~G~sG~GKSTll~~ 188 (301)
T 1u0l_A 139 LEEIYS----GL-YPIVKTSAKTGM----------GIEELKEYLKG-----------K----ISTMAGLSGVGKSSLLNA 188 (301)
T ss_dssp HHHHHT----TT-SCEEECCTTTCT----------THHHHHHHHSS-----------S----EEEEECSTTSSHHHHHHH
T ss_pred HHHHHh----hh-CcEEEEECCCCc----------CHHHHHHHhcC-----------C----eEEEECCCCCcHHHHHHH
Confidence 222221 11 679999999998 99999887632 1 112223445666555566
Q ss_pred ecCccc
Q psy1758 1144 LSGRIK 1149 (1527)
Q Consensus 1144 ~sG~lk 1149 (1527)
..|.++
T Consensus 189 l~g~~~ 194 (301)
T 1u0l_A 189 INPGLK 194 (301)
T ss_dssp HSTTCC
T ss_pred hccccc
Confidence 666544
No 443
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.93 E-value=2.4e-05 Score=89.60 Aligned_cols=113 Identities=17% Similarity=0.249 Sum_probs=70.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccc--------cCCceeE-EEEEEEEEeCC--eEEEEEeCCChh-----------
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFS--------EAGGITQ-HIGAYNVVTNH--GSITFLDTPGHE----------- 127 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~--------~~~giT~-~~~~~~~~~~~--~~i~~iDTPG~e----------- 127 (1527)
++++++|++|+|||||++.|.+.....+ ..+..+. ....+.+...+ ..++++|+||..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 5799999999999999999976542211 0111110 00011111111 268999999821
Q ss_pred --h-----HHHHHHh----------hccccCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc
Q psy1758 128 --A-----FTAMRAR----------GAKVTDIVVLVVAAD-DGVMPQTREAIAHAKISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 128 --~-----f~~~~~~----------~~~~aD~~IlVvda~-~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~ 183 (1527)
. |...... .+..++++++++|.. .+..+...+.+..+... +++|+|+||+|....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCH
Confidence 1 1111111 123368889999955 68889998888888776 999999999998764
No 444
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.91 E-value=1.6e-05 Score=89.93 Aligned_cols=101 Identities=15% Similarity=0.050 Sum_probs=70.9
Q ss_pred CChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHH----HH---H-HcCCCEEEEEEc-ccCCcch-hHHHHHHHh
Q psy1758 124 PGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIA----HA---K-ISGVPLIVAINK-IDKLDIN-LDRIKQDLI 193 (1527)
Q Consensus 124 PG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~----~~---~-~~~vpiIvviNK-iDl~~~~-~~~~~~~l~ 193 (1527)
.||+.++.++..|+..+|++|+|||++|.......+.+. .+ . ..++|++|+.|| .|++.+- ..++.+.+.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~ 274 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 274 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence 368999999999999999999999999854322333222 22 1 258999999997 5887643 334444333
Q ss_pred hhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 194 SEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 194 ~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
-... ...+.+.+|||++|+|+.+-+++|...
T Consensus 275 L~~l-----~r~W~Iq~csA~tGeGL~EGldWL~~~ 305 (312)
T 3l2o_B 275 LNLL-----NHPWLVQDTEAETLTGFLNGIEWILEE 305 (312)
T ss_dssp GGGG-----CSCEEEEEEETTTCTTHHHHHHHHHHH
T ss_pred CccC-----CCcEEEEecccCCCcCHHHHHHHHHHH
Confidence 2221 234589999999999999999999744
No 445
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.89 E-value=3.5e-06 Score=102.66 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=83.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc------ccc-cc------------------------cCCceeEEEEE----EEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT------NVV-FS------------------------EAGGITQHIGA----YNVV 112 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~------~~~-~~------------------------~~~giT~~~~~----~~~~ 112 (1527)
++.+|+++|++|+||||+++.|... .+. .. ..++.+.+... ..-.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988642 110 00 00001111100 0000
Q ss_pred eCCeEEEEEeCCChhh----HHHHHH--hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCC-C-EEEEEEcccCCcch
Q psy1758 113 TNHGSITFLDTPGHEA----FTAMRA--RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV-P-LIVAINKIDKLDIN 184 (1527)
Q Consensus 113 ~~~~~i~~iDTPG~e~----f~~~~~--~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~v-p-iIvviNKiDl~~~~ 184 (1527)
+.+..+.|+||||... +..... ..+..+|.+++|+|+..+. .......... ..+ | ..+|+||+|....
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~~- 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGSAK- 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSCST-
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCccc-
Confidence 2456799999999432 222221 2234689999999998763 2233333222 346 6 8899999998542
Q ss_pred hHHHHHHHhhhcc---------cccccCCCCcEEEeeccCCCC-hhHHHHHH
Q psy1758 185 LDRIKQDLISEQV---------IPEEYGGASPFISISAKTGVG-INKLLENI 226 (1527)
Q Consensus 185 ~~~~~~~l~~~~~---------~~~~~~~~~~v~~iSAktg~g-I~eL~~~l 226 (1527)
............. ...+...+.|...+|+..|.| +..|++.+
T Consensus 254 ~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~ 305 (432)
T 2v3c_C 254 GGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKA 305 (432)
T ss_dssp THHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTT
T ss_pred hHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHH
Confidence 1212211111100 001111233455678888887 77777666
No 446
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.88 E-value=0.00013 Score=78.75 Aligned_cols=111 Identities=13% Similarity=-0.003 Sum_probs=66.6
Q ss_pred EEEEEeCC------CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHH---HH--H---cCCccEEEEecc-CCC
Q psy1758 986 RINIIDTP------GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRK---AL--K---LGFKPIVVVNKI-DRS 1050 (1527)
Q Consensus 986 ~iniiDTP------Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~---~~--~---~glp~IvviNKi-D~~ 1050 (1527)
++..--+| |+..+...+..++..+|++|+|||+++......+.-+.. +. . .+.|++|+.||. |.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 44555666 566677788899999999999999987533234443321 11 1 478999999995 787
Q ss_pred CCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1051 NARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1051 ~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++-.. .++.+.+. +... ...+-+..+||++|. |+.+-++++.+.+.
T Consensus 177 ~Ams~---~EI~e~L~-L~~l--~R~W~Iq~csA~TGe----------GL~EGLdWL~~~l~ 222 (227)
T 3l82_B 177 KRMPC---FYLAHELH-LNLL--NHPWLVQDTEAETLT----------GFLNGIEWILEEVE 222 (227)
T ss_dssp CBCCH---HHHHHHTT-GGGG--CSCEEEEEEETTTCT----------THHHHHHHHTTTTT
T ss_pred CCCCH---HHHHHHcC-CcCC--CCCEEEEEeECCCCc----------CHHHHHHHHHHHHH
Confidence 66322 23333221 2211 235678999999998 99999999988764
No 447
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.85 E-value=4.6e-06 Score=99.04 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=76.2
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCC-------CCC----ChhHHHHHHHHHH----cCCccEEEEecc
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAV-------EGP----MPQTRFVTRKALK----LGFKPIVVVNKI 1047 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~-------~G~----~~qt~~~~~~~~~----~glp~IvviNKi 1047 (1527)
+...+.||||+|+..|...+..+++.++++|+|+|.+ +.. +......|..... .+.|+++|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999987 111 1233344444433 368999999999
Q ss_pred CCCCCC------------------------hhhhHHHHHHHHhhh---cccc--cccCCcEEEeccccCCcCCCcccccC
Q psy1758 1048 DRSNAR------------------------PEWVVDATFDLFDKL---CATE--EQLDFPVIYTSALHGYANENSKARQG 1098 (1527)
Q Consensus 1048 D~~~a~------------------------~~~v~~~~~~~~~~l---~~~~--~~~~~pvi~~SA~~g~~~~~~~~~~~ 1098 (1527)
|+.... .++..+-+...|..+ .... ....++++.+||+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~---------- 330 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK---------- 330 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH----------
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch----------
Confidence 973210 111111122222222 0000 0123457899999998
Q ss_pred CChhHHHHHHhhc
Q psy1758 1099 NMIPLFEAILKYV 1111 (1527)
Q Consensus 1099 gi~~Ll~~i~~~l 1111 (1527)
|++.+|+++.+.+
T Consensus 331 nV~~vF~~v~~~I 343 (354)
T 2xtz_A 331 LVKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8999998887654
No 448
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.79 E-value=6e-05 Score=86.83 Aligned_cols=101 Identities=23% Similarity=0.199 Sum_probs=66.2
Q ss_pred EEeCCChh-hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc
Q psy1758 120 FLDTPGHE-AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI 198 (1527)
Q Consensus 120 ~iDTPG~e-~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~ 198 (1527)
+-+.|||. +........+..+|+++.|+|+.++........-..+ .+.|.++|+||+|+.+... .......
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~---~~~~~~~--- 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAV---TQQWKEH--- 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHH---HHHHHHH---
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHH---HHHHHHH---
Confidence 44679986 5667778889999999999999986654432222222 5789999999999986321 1111111
Q ss_pred ccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 199 PEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 199 ~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
.+. ...+++++||++|.|+++|++.+....
T Consensus 75 ~~~--~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 75 FEN--QGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHT--TTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHh--cCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 011 124899999999999999999886543
No 449
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.79 E-value=4e-05 Score=88.90 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=71.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchh-----------hhhcccceeEeeee-------------
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN-----------EIEKERGITIFSKN------------- 977 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~-----------~~E~erGiTi~~~~------------- 977 (1527)
...|+++|+.|+||||++..|...... ..+.+. +.|.. ......|+.+.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~--l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l 173 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVG--LVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV 173 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEE--EEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEE--EEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHH
Confidence 568899999999999999999754210 001110 00100 00112344332211
Q ss_pred EEEEecCeEEEEEeCCCCCC--chHHHH------HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccC
Q psy1758 978 CSIEYNGTRINIIDTPGHAD--FGGEVE------RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKID 1048 (1527)
Q Consensus 978 ~~~~~~~~~iniiDTPGh~d--f~~ev~------~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD 1048 (1527)
..+.++++.+.||||||... ....+. ..+..+|.+++|+|+..| .++....+.... .+| ..+|+||+|
T Consensus 174 ~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D 250 (297)
T 1j8m_F 174 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMD 250 (297)
T ss_dssp HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGG
T ss_pred HHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 01123678899999999877 433332 245678999999999864 233333333332 577 467899999
Q ss_pred CC
Q psy1758 1049 RS 1050 (1527)
Q Consensus 1049 ~~ 1050 (1527)
..
T Consensus 251 ~~ 252 (297)
T 1j8m_F 251 GT 252 (297)
T ss_dssp GC
T ss_pred CC
Confidence 74
No 450
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.77 E-value=4e-05 Score=88.27 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=69.8
Q ss_pred EEeCCCCC-CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh
Q psy1758 989 IIDTPGHA-DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 989 iiDTPGh~-df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~ 1067 (1527)
|-+-|||. .+..++.+.+..+|+++.|+||.++.......+-+.+ .++|.++|+||+|+.+ . +..+...+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~--~-~~~~~~~~~~~~ 77 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD--A-AVTQQWKEHFEN 77 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC--H-HHHHHHHHHHHT
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC--H-HHHHHHHHHHHh
Confidence 44679997 4678899999999999999999987655432222222 5789999999999965 2 223333333321
Q ss_pred hcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1068 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.++|++++||++|. |+..|++.+.+.++
T Consensus 78 -------~g~~~i~iSA~~~~----------gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 78 -------QGIRSLSINSVNGQ----------GLNQIVPASKEILQ 105 (282)
T ss_dssp -------TTCCEEECCTTTCT----------TGGGHHHHHHHHHH
T ss_pred -------cCCcEEEEECCCcc----------cHHHHHHHHHHHHH
Confidence 24579999999998 99999998877664
No 451
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.77 E-value=8e-05 Score=90.30 Aligned_cols=142 Identities=17% Similarity=0.163 Sum_probs=78.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHc------cccc-cc----------------cCCceeEEEEEE-------------EE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRK------TNVV-FS----------------EAGGITQHIGAY-------------NV 111 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~------~~~~-~~----------------~~~giT~~~~~~-------------~~ 111 (1527)
++.+|+++|.+|+||||++..|.. ..+. .. ...++....... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988753 1210 00 001111100000 00
Q ss_pred EeCCeEEEEEeCCCh----hhHHHHHH--hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh
Q psy1758 112 VTNHGSITFLDTPGH----EAFTAMRA--RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185 (1527)
Q Consensus 112 ~~~~~~i~~iDTPG~----e~f~~~~~--~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~ 185 (1527)
...+..+.|+||||. +....... ..+..+|.++||+|+..+- +...........-.+..+++||+|.....
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~~g- 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSAKG- 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCSSH-
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCcccc-
Confidence 013467999999992 12222111 2334579999999999752 23333444443334577999999986421
Q ss_pred HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
........ . ...|+..++. |+++++|.
T Consensus 256 G~~ls~~~-------~--~g~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 256 GGALSAVA-------A--TGAPIKFIGT--GEKIDDIE 282 (443)
T ss_dssp HHHHHHHH-------T--TCCCEEEEEC--SSSTTCEE
T ss_pred cHHHHHHH-------H--HCCCEEEEEc--CCChHHhh
Confidence 11111111 1 1247777775 88776543
No 452
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.68 E-value=3.1e-05 Score=94.38 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=72.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--------ceecchh-hhhcccceeEeeeeE------------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--------ARIMDSN-EIEKERGITIFSKNC------------ 978 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--------~~~~D~~-~~E~erGiTi~~~~~------------ 978 (1527)
...+.|+++|+.|+||||++..|......- ....+- ....+.. ......|+.+.+...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 346789999999999999999998542110 000000 0000000 012234444433210
Q ss_pred -EEEecCeEEEEEeCCCCCCchHHHHHH------HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCC
Q psy1758 979 -SIEYNGTRINIIDTPGHADFGGEVERI------LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRS 1050 (1527)
Q Consensus 979 -~~~~~~~~iniiDTPGh~df~~ev~~~------l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~ 1050 (1527)
.+.+.++.+.||||||...+...+... +..+|.+++|+|+..|. . ........ ..++++ -+|+||+|..
T Consensus 177 ~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~-~-~~~~~~~f-~~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ-D-AANTAKAF-NEALPLTGVVLTKVDGD 253 (433)
T ss_dssp HHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT-T-HHHHHHHH-HHHSCCCCEEEECTTSS
T ss_pred HHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH-H-HHHHHHHH-hccCCCeEEEEecCCCC
Confidence 112357899999999987775554443 33678999999998762 2 22222211 123553 4689999974
No 453
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.65 E-value=3e-05 Score=97.50 Aligned_cols=98 Identities=17% Similarity=0.152 Sum_probs=59.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCcee----EEEEEEEEE---eCCeEEEEEeCCChhhHH------HHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGIT----QHIGAYNVV---TNHGSITFLDTPGHEAFT------AMR 133 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT----~~~~~~~~~---~~~~~i~~iDTPG~e~f~------~~~ 133 (1527)
.+.++|+|+|.+|+|||||+|+|.+..... ..+++| ..+..+... ..+..+.|+||||-.... ...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 345689999999999999999999876432 233333 322222111 245689999999932211 011
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHH
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAK 165 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~ 165 (1527)
..++...-..++|||+..++..+....+..+.
T Consensus 115 ~fala~llss~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 115 IFALAVLLSSTFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp HHHHHHHHCSEEEEEEESCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcCeEEEECCCCccHHHHHHHHHHH
Confidence 11111111126888888888888777665543
No 454
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=97.64 E-value=3.4e-05 Score=88.67 Aligned_cols=140 Identities=23% Similarity=0.258 Sum_probs=92.6
Q ss_pred eeEEEEeCCCCCCHH-------HHHHHHHHHhccccccccCCCCCCCeEEEEEEecc--cccccccccCCCcEEEEEEEE
Q psy1758 663 HGVLLLDKPYGLSSN-------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE--ATKFSNYLSEADKYYEAIIHL 733 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~-------~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~--~tk~~~~~~~~~K~Y~~~~~~ 733 (1527)
.-++++|||+|+.|| .+++.+.. ..++.+.|.||..+||||+++-.. +.+|..--....|+|.+.+.
T Consensus 67 ~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~---~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~~~~~v~K~Y~a~V~- 142 (290)
T 3dh3_A 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD- 142 (290)
T ss_dssp CCEEEEEECTTCBCCCCSSCTTBHHHHHTC---SSCCEESSCCCTTCEEEEEEESCTTHHHHHHCGGGCCCEEEEEEES-
T ss_pred ceEEEEECCCccccCCCCCCCCcHHHHhhc---cCceeeeccCCCCCcceEEEcCCHHHHHHHHHhhCCcCEEEEEEEC-
Confidence 348999999999887 46666654 457899999999999999999865 34454444467999999874
Q ss_pred CccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEE
Q psy1758 734 GITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITII 813 (1527)
Q Consensus 734 G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~ 813 (1527)
| +++.+.++..- .| +.++|. ..++..+ +..
T Consensus 143 ----------G---------~~~~~~i~~l~---~G-----------v~l~~~--------------~~~~~~v---~~~ 172 (290)
T 3dh3_A 143 ----------K---------PITEEFIRGMS---AG-----------VPILGT--------------VTKKCKV---KKE 172 (290)
T ss_dssp ----------S---------CCCHHHHHHHH---TC-----------CBCSSS--------------BCCCCEE---EEC
T ss_pred ----------C---------CCCHHHHHHHh---cC-----------cccCCc--------------ccceEEE---EEc
Confidence 2 23455544211 11 112221 1111111 111
Q ss_pred EEeCCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCcccccc
Q psy1758 814 DYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK 864 (1527)
Q Consensus 814 ~~~~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~ 864 (1527)
+...+.+.++.++--.||..+..+|.. +..|.|+++|+++|++
T Consensus 173 --~~~~l~l~l~tGR~HQIR~~~~~lG~p------V~~L~R~~iG~l~L~~ 215 (290)
T 3dh3_A 173 --APFVFRITLVQGLNRQIRRMCEHFGYE------VKKLERTRIMNVSLSG 215 (290)
T ss_dssp --SSSEEEEEESCCCTTHHHHHHHHTTCC------EEEEEEEEETTEECTT
T ss_pred --CCeEEEEEEeCCCChHHHHHHHHcCCe------EEEeEEEEECCEecCC
Confidence 234566666667777899998876543 7899999999999975
No 455
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.63 E-value=2.3e-05 Score=98.48 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=64.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEE-EecCeEEEEEeCCCCCCc
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI-EYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~-~~~~~~iniiDTPGh~df 998 (1527)
.....|+|+|.+|+|||||+|+|++....+...+.+. ...+|+.... ..+ ...+..+.|+||||..+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~---------~~T~gi~~~~--~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQ---------SHTKGIWMWC--VPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSS---------CCCCSEEEEE--EECSSSTTCEEEEEEECCBCCG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCC---------CceeEEEEee--cccccCCCceEEEecCCCcCcc
Confidence 3457899999999999999999987643222111110 1112221100 000 125678999999997654
Q ss_pred hH-----HHH-HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC
Q psy1758 999 GG-----EVE-RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037 (1527)
Q Consensus 999 ~~-----ev~-~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~g 1037 (1527)
.. .+. .++...-..++|+|+..++..+....+..+.+.+
T Consensus 105 ~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~ 149 (592)
T 1f5n_A 105 EKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELT 149 (592)
T ss_dssp GGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHH
T ss_pred cccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHh
Confidence 32 111 1233322337888998888888887777666544
No 456
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.61 E-value=5.2e-05 Score=90.78 Aligned_cols=100 Identities=22% Similarity=0.235 Sum_probs=66.2
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch--hHHHHHHHhhhccccccc
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN--LDRIKQDLISEQVIPEEY 202 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~ 202 (1527)
.+++|.+.....+..++++++|+|+.+.... +...+... ..+.|+++|+||+|+.+.+ .+.....+... ....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s-~~~~l~~~-l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~---~~~~ 131 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGS-FIPGLPRF-AADNPILLVGNKADLLPRSVKYPKLLRWMRRM---AEEL 131 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGGG-CCSSHHHH-CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHH---HHTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCCc-hhhHHHHH-hCCCCEEEEEEChhcCCCccCHHHHHHHHHHH---HHHc
Confidence 4899999999988999999999999985432 22222221 1378999999999997642 12222221111 0111
Q ss_pred CC-CCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 203 GG-ASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 203 ~~-~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
+. ..+++++||++|.|+++|++.+...
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 21 1378999999999999999998643
No 457
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.58 E-value=4.4e-05 Score=91.38 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=65.8
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhccccccc
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEY 202 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~ 202 (1527)
.+++|..+.....+.+|++++|+|+++.. ..|...+... ..+.|+++|+||+|+.+... +.....+... ....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-~~~~~~l~~~-~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~---~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-GSWLPGLHRF-VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYS---AKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-HHCCTTHHHH-SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHH---HHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-ccHHHHHHHH-hCCCcEEEEEEChhcCCcccCHHHHHHHHHHH---HHHc
Confidence 46899999999999999999999999732 2222222222 13789999999999975331 1222211110 0111
Q ss_pred CC-CCcEEEeeccCCCChhHHHHHHHH
Q psy1758 203 GG-ASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 203 ~~-~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
+. ..+++++||++|.|+++|++.+..
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 11 137999999999999999999864
No 458
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.55 E-value=0.00011 Score=89.09 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=77.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHc------ccccc-c----------------cCCceeEEEEEE-------------EE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRK------TNVVF-S----------------EAGGITQHIGAY-------------NV 111 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~------~~~~~-~----------------~~~giT~~~~~~-------------~~ 111 (1527)
++..|+++|++|+||||++..|.. .++.. . ...++....... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 466889999999999999988852 11100 0 011111100000 00
Q ss_pred EeCCeEEEEEeCCChhh------HHHHHHh--hccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc
Q psy1758 112 VTNHGSITFLDTPGHEA------FTAMRAR--GAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 112 ~~~~~~i~~iDTPG~e~------f~~~~~~--~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~ 183 (1527)
...+..+.|+||||... +...... .....|.+++|+|+..+ .+...........-.+..+++||+|...
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDGTA- 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGGCS-
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecccccc-
Confidence 01255789999999422 2222221 22346999999999875 2233344444433356889999999753
Q ss_pred hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 184 NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
............ ..|+..++. |++++
T Consensus 253 ~~G~als~~~~~---------g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 253 KGGGALSAVVAT---------GATIKFIGT--GEKID 278 (433)
T ss_dssp CHHHHHHHHHHH---------TCEEEEEEC--CSSSS
T ss_pred cchHHHHHHHHH---------CCCEEEEEC--CCChH
Confidence 222222211111 247777775 87775
No 459
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.52 E-value=4.4e-05 Score=88.90 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=63.8
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhH-HHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGP-MPQT-RFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt-~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+..|..-...+++.+|.+++|+|++++. ..+. ...+..+...++|+++|+||+|+.+.+.....++..+.+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~----- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRD----- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-----
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHH-----
Confidence 3344333334689999999999999764 3332 34455666789999999999999643210112333333322
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHH
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAI 1107 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i 1107 (1527)
..+|++++||++|. |+++|++.+
T Consensus 141 --~g~~~~~~SA~~g~----------gi~~L~~~l 163 (302)
T 2yv5_A 141 --AGYDVLKVSAKTGE----------GIDELVDYL 163 (302)
T ss_dssp --TTCEEEECCTTTCT----------THHHHHHHT
T ss_pred --CCCeEEEEECCCCC----------CHHHHHhhc
Confidence 24679999999998 888888765
No 460
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.33 E-value=0.00089 Score=77.57 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=79.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc------cccc--ccC--C-------------ceeEEEEE-------------EEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT------NVVF--SEA--G-------------GITQHIGA-------------YNV 111 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~------~~~~--~~~--~-------------giT~~~~~-------------~~~ 111 (1527)
++..|+++|++|+||||++..|... .+.. ... + ++..-... ..+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999887521 2110 000 0 11100000 000
Q ss_pred EeCCeEEEEEeCCChhh--HHH-HHH-----hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCc
Q psy1758 112 VTNHGSITFLDTPGHEA--FTA-MRA-----RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLD 182 (1527)
Q Consensus 112 ~~~~~~i~~iDTPG~e~--f~~-~~~-----~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~ 182 (1527)
...+..+.|+||||... ... ++. ..+..+|.+++|+|+..+ .+..+.+..... ..| ..+++||+|...
T Consensus 177 ~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 177 LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA 253 (297)
T ss_dssp HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT
T ss_pred HhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc
Confidence 11455799999999554 211 111 234578999999999864 334444444333 467 788999999753
Q ss_pred chhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
....... +.. .+ ..|+..++ +|+++++|.
T Consensus 254 -~~g~~~~-~~~------~~--~~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 254 -KGGGALS-AVA------AT--GATIKFIG--TGEKIDELE 282 (297)
T ss_dssp -THHHHHH-HHH------TT--TCCEEEEE--CSSSTTCEE
T ss_pred -chHHHHH-HHH------HH--CcCEEEEe--CCCChhhcc
Confidence 1111111 111 11 24777766 688887654
No 461
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.22 E-value=0.00014 Score=82.81 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=61.7
Q ss_pred CCCCCch-HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 993 PGHADFG-GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 993 PGh~df~-~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
|||.... .++...+..+|.++.|+||.++.......+ ..+ ++|+++|+||+|+.+. +..++..+.+.+
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~~---~~~~~~~~~~~~---- 73 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIADE---KTTKKWVEFFKK---- 73 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSCH---HHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCCH---HHHHHHHHHHHH----
Confidence 9997644 688899999999999999998755432211 111 8999999999999652 223333333322
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
.++|+ ++||++|. |++.|++.+.+
T Consensus 74 ---~g~~v-~iSa~~~~----------gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ---QGKRV-ITTHKGEP----------RKVLLKKLSFD 97 (262)
T ss_dssp ---TTCCE-EECCTTSC----------HHHHHHHHCCC
T ss_pred ---cCCeE-EEECCCCc----------CHHHHHHHHHH
Confidence 24578 99999998 88888877643
No 462
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.19 E-value=0.00054 Score=87.32 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=43.8
Q ss_pred EEEEEeCCCh-------------hhHHHHHHhhccc-cCEEEEEEeCCCCCcH-HHHHHHHHHHHcCCCEEEEEEcccCC
Q psy1758 117 SITFLDTPGH-------------EAFTAMRARGAKV-TDIVVLVVAADDGVMP-QTREAIAHAKISGVPLIVAINKIDKL 181 (1527)
Q Consensus 117 ~i~~iDTPG~-------------e~f~~~~~~~~~~-aD~~IlVvda~~g~~~-qt~e~i~~~~~~~vpiIvviNKiDl~ 181 (1527)
.+.++|.||. .....+...++.. ..+++++++++..... .....+..+...+.+.|+|+||.|+.
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv 227 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLV 227 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGS
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhc
Confidence 5899999972 2344455555544 3566677776654432 33455555555678999999999997
Q ss_pred cc
Q psy1758 182 DI 183 (1527)
Q Consensus 182 ~~ 183 (1527)
..
T Consensus 228 ~~ 229 (608)
T 3szr_A 228 DK 229 (608)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 463
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.16 E-value=0.00047 Score=80.96 Aligned_cols=148 Identities=19% Similarity=0.278 Sum_probs=77.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc----cCcccccccccceecchhhh------hcccceeEeeeeEEE----------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARIMDSNEI------EKERGITIFSKNCSI---------- 980 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~----~g~~~~~~~~~~~~~D~~~~------E~erGiTi~~~~~~~---------- 980 (1527)
....++++|+.|+|||||+..|.+. .|.+.-.+. ........ -+..|+.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~---D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS---DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE---CCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee---cccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3467999999999999999999754 121110000 00000001 122343222111000
Q ss_pred ---EecCeEEEEEeCCCCCCc----hHHHHHH--HHhcCEEEEEEeCCCCCChhHHHHHHHHH-HcCCccEEEEeccCCC
Q psy1758 981 ---EYNGTRINIIDTPGHADF----GGEVERI--LSMVDNVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVNKIDRS 1050 (1527)
Q Consensus 981 ---~~~~~~iniiDTPGh~df----~~ev~~~--l~~aD~ailVVDa~~G~~~qt~~~~~~~~-~~glp~IvviNKiD~~ 1050 (1527)
...++.+.++||+|.... ..++... .-..|-.++++|+..+- +....++... ..+ ..++++||+|..
T Consensus 205 ~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~-it~iilTKlD~~ 281 (328)
T 3e70_C 205 QHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVK-IDGIILTKLDAD 281 (328)
T ss_dssp HHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSC-CCEEEEECGGGC
T ss_pred HHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcC-CCEEEEeCcCCc
Confidence 013456788999996543 2333221 12479999999988762 2233333322 223 347889999973
Q ss_pred CCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCC
Q psy1758 1051 NARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1051 ~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
+.....+.-+.. ...|+.|++ +|+
T Consensus 282 -a~~G~~l~~~~~-----------~~~pi~~i~--~Ge 305 (328)
T 3e70_C 282 -ARGGAALSISYV-----------IDAPILFVG--VGQ 305 (328)
T ss_dssp -SCCHHHHHHHHH-----------HTCCEEEEE--CSS
T ss_pred -cchhHHHHHHHH-----------HCCCEEEEe--CCC
Confidence 333333322221 245888888 555
No 464
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.09 E-value=0.00016 Score=82.24 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=57.1
Q ss_pred CCChhhH-HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccc
Q psy1758 123 TPGHEAF-TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEE 201 (1527)
Q Consensus 123 TPG~e~f-~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~ 201 (1527)
-|||... .......+..+|+++.|+|+.++........ ..+ +.|.++|+||+|+.+... ....... ...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~~~~---~~~~~~~---~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIADEKT---TKKWVEF---FKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSCHHH---HHHHHHH---HHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCCHHH---HHHHHHH---HHH
Confidence 3888644 3456677899999999999998654432111 111 899999999999986321 1111111 011
Q ss_pred cCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 202 YGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 202 ~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
. ..++ .+||++|.|+++|++.+
T Consensus 74 ~--g~~v-~iSa~~~~gi~~L~~~l 95 (262)
T 3cnl_A 74 Q--GKRV-ITTHKGEPRKVLLKKLS 95 (262)
T ss_dssp T--TCCE-EECCTTSCHHHHHHHHC
T ss_pred c--CCeE-EEECCCCcCHHHHHHHH
Confidence 1 2467 99999999999998876
No 465
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.002 Score=72.89 Aligned_cols=103 Identities=14% Similarity=0.008 Sum_probs=70.7
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH----HH---HH-cCCccEEEEec-cCCCCCChhhhHHHHHHH
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR----KA---LK-LGFKPIVVVNK-IDRSNARPEWVVDATFDL 1064 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~----~~---~~-~glp~IvviNK-iD~~~a~~~~v~~~~~~~ 1064 (1527)
|+..+...+..++..+|++|+|||+++......+.-+. .+ .. .+.|++|+.|| -|.+++-.. .++.+.
T Consensus 196 GQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~---~EI~e~ 272 (312)
T 3l2o_B 196 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLAHE 272 (312)
T ss_dssp -CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH---HHHHHH
T ss_pred CHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH---HHHHHH
Confidence 67778889999999999999999998753222333221 12 22 58999999997 588776422 233332
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+. +... ...+-+..+||++|. |+.+-++++.+.+.
T Consensus 273 L~-L~~l--~r~W~Iq~csA~tGe----------GL~EGldWL~~~l~ 307 (312)
T 3l2o_B 273 LH-LNLL--NHPWLVQDTEAETLT----------GFLNGIEWILEEVE 307 (312)
T ss_dssp TT-GGGG--CSCEEEEEEETTTCT----------THHHHHHHHHHHSC
T ss_pred cC-CccC--CCcEEEEecccCCCc----------CHHHHHHHHHHHHH
Confidence 21 2111 235668999999998 99999999988774
No 466
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=96.83 E-value=0.0024 Score=69.75 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=64.5
Q ss_pred CCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC
Q psy1758 238 PVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP 313 (1527)
Q Consensus 238 ~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~ 313 (1527)
+.+.|++..|.+.+. +.|++++++|.+|++++||.|.+.+ ...+|++|+.++ +.+.+|.||+.+.+ .|++...
T Consensus 2 ~~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~-~~~~~A~aGd~V~l~L~gi~~~d 78 (204)
T 3e1y_E 2 PLGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDD-VETDTVAPGENLKIRLKGIEEEE 78 (204)
T ss_dssp -----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSS-SCBSEECTTSEEEEEEEESSSSC
T ss_pred CCCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECC-EEeEEECCCCEEEEEEcCCCHHH
Confidence 356788999998876 7899999999999999999998865 468999997665 57899999998887 7777554
Q ss_pred -CCCCeEEEe
Q psy1758 314 -FSGEELFVI 322 (1527)
Q Consensus 314 -~~G~~~~~~ 322 (1527)
.+|+++..-
T Consensus 79 i~rG~vl~~~ 88 (204)
T 3e1y_E 79 ILPGFILCDP 88 (204)
T ss_dssp CCTTCEEBCS
T ss_pred CccceEEECC
Confidence 789977643
No 467
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.78 E-value=0.002 Score=69.87 Aligned_cols=64 Identities=9% Similarity=0.034 Sum_probs=52.4
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC-----CccEEEEeccCCC
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG-----FKPIVVVNKIDRS 1050 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~g-----lp~IvviNKiD~~ 1050 (1527)
.|.+.|||||+.. ......++..+|.+|+++.+.... ..+...++.+.+.+ ++..+|+|++|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999976 556778899999999999998776 77777777777553 5778899999954
No 468
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.72 E-value=0.0018 Score=82.53 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=39.6
Q ss_pred eEEEEEeCCCCCC--c-------hHHHHHHHHh-----cCEEEEEEeCCCCCChhH-HHHHHHHHHcCCccEEEEeccCC
Q psy1758 985 TRINIIDTPGHAD--F-------GGEVERILSM-----VDNVLLLIDAVEGPMPQT-RFVTRKALKLGFKPIVVVNKIDR 1049 (1527)
Q Consensus 985 ~~iniiDTPGh~d--f-------~~ev~~~l~~-----aD~ailVVDa~~G~~~qt-~~~~~~~~~~glp~IvviNKiD~ 1049 (1527)
-.+.|+|.||... + ...+...+.. ...+++++++......+. ..+++.+...|.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 4689999998543 1 1233333322 256677777665443222 33444444458899999999998
Q ss_pred CCC
Q psy1758 1050 SNA 1052 (1527)
Q Consensus 1050 ~~a 1052 (1527)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 754
No 469
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.63 E-value=0.0043 Score=71.98 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=64.9
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc----cCccccccccccee--cchh-hhhcccceeEeeeeEE----------E---
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARI--MDSN-EIEKERGITIFSKNCS----------I--- 980 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~----~g~~~~~~~~~~~~--~D~~-~~E~erGiTi~~~~~~----------~--- 980 (1527)
....|+|+|+.|+|||||+..|... .|.+.-.+....+. .+.. ...+.+++.+...... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999754 12111000000000 0000 0001123322111100 0
Q ss_pred EecCeEEEEEeCCCCCCchHHHHH-------HH-----HhcCEEEEEEeCCCCCChhHHHHHH-HHHHcCCccEEEEecc
Q psy1758 981 EYNGTRINIIDTPGHADFGGEVER-------IL-----SMVDNVLLLIDAVEGPMPQTRFVTR-KALKLGFKPIVVVNKI 1047 (1527)
Q Consensus 981 ~~~~~~iniiDTPGh~df~~ev~~-------~l-----~~aD~ailVVDa~~G~~~qt~~~~~-~~~~~glp~IvviNKi 1047 (1527)
...++.+.++||+|..+....... ++ ...+.+++++|+..+.. ....+. .....++ .++++||.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivTh~ 257 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVTKL 257 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEECT
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEECC
Confidence 113456779999997553322211 11 23678899999987632 222222 2233454 57889999
Q ss_pred CCC
Q psy1758 1048 DRS 1050 (1527)
Q Consensus 1048 D~~ 1050 (1527)
|..
T Consensus 258 d~~ 260 (304)
T 1rj9_A 258 DGT 260 (304)
T ss_dssp TSS
T ss_pred ccc
Confidence 864
No 470
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.57 E-value=0.0023 Score=78.33 Aligned_cols=128 Identities=19% Similarity=0.236 Sum_probs=66.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhc----cCcccccccccceec--chh-hhhcccceeEeeeeEEEE-----------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARIM--DSN-EIEKERGITIFSKNCSIE----------- 981 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~----~g~~~~~~~~~~~~~--D~~-~~E~erGiTi~~~~~~~~----------- 981 (1527)
.....|+|+|..|+|||||+..|.+. .|.+.-.+....+.. +.. .....+++.+........
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 34567999999999999999999754 222211000000000 000 011223443332211100
Q ss_pred --ecCeEEEEEeCCCCCCchHHH----H---HHHH-----hcCEEEEEEeCCCCCChhHHHHHHHHH-HcCCccEEEEec
Q psy1758 982 --YNGTRINIIDTPGHADFGGEV----E---RILS-----MVDNVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVNK 1046 (1527)
Q Consensus 982 --~~~~~iniiDTPGh~df~~ev----~---~~l~-----~aD~ailVVDa~~G~~~qt~~~~~~~~-~~glp~IvviNK 1046 (1527)
..++.+.||||+|........ . +.++ ..+-++||+|++.|- .....++... ..++ ..+++||
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~i-tgvIlTK 447 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGL-TGITLTK 447 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCC-SEEEEEC
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCC-CEEEEEc
Confidence 145678899999976543322 1 2222 146789999998762 1112222222 2343 3578999
Q ss_pred cCCC
Q psy1758 1047 IDRS 1050 (1527)
Q Consensus 1047 iD~~ 1050 (1527)
+|..
T Consensus 448 LD~t 451 (503)
T 2yhs_A 448 LDGT 451 (503)
T ss_dssp GGGC
T ss_pred CCCc
Confidence 9963
No 471
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.57 E-value=0.0026 Score=74.67 Aligned_cols=143 Identities=14% Similarity=0.145 Sum_probs=76.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccc--------cC---------------CceeEEEEEEEE------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFS--------EA---------------GGITQHIGAYNV------------ 111 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~--------~~---------------~giT~~~~~~~~------------ 111 (1527)
.++-.++++|++|+|||||+..|.+.....+ .. -++..-......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 3566899999999999999998864311100 00 010000000000
Q ss_pred -EeCCeEEEEEeCCChh----hHHHHHHh--hccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch
Q psy1758 112 -VTNHGSITFLDTPGHE----AFTAMRAR--GAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN 184 (1527)
Q Consensus 112 -~~~~~~i~~iDTPG~e----~f~~~~~~--~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~ 184 (1527)
...+..+.++||+|.. .+...... .+-..|-.++++|+..+ .+..+.+..+...--..++++||+|-.. .
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~~a-~ 283 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDADA-R 283 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGGCS-C
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCCcc-c
Confidence 0013457789999942 22222111 12347899999998875 2444444444432223578899999633 2
Q ss_pred hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
........... ..|+..++ +|+++++|.
T Consensus 284 ~G~~l~~~~~~---------~~pi~~i~--~Ge~v~dl~ 311 (328)
T 3e70_C 284 GGAALSISYVI---------DAPILFVG--VGQGYDDLR 311 (328)
T ss_dssp CHHHHHHHHHH---------TCCEEEEE--CSSSTTCEE
T ss_pred hhHHHHHHHHH---------CCCEEEEe--CCCCccccc
Confidence 22222211111 14777777 788887653
No 472
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.55 E-value=0.0022 Score=77.71 Aligned_cols=125 Identities=19% Similarity=0.193 Sum_probs=67.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccccccc---ceecchhh------hhcccceeEeeeeE----------EE-
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN---ARIMDSNE------IEKERGITIFSKNC----------SI- 980 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~---~~~~D~~~------~E~erGiTi~~~~~----------~~- 980 (1527)
....|+++|+.|+||||++..|...... ..+.+. ........ .....|+.+.+... .+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHH
Confidence 4567899999999999999999754111 011110 00000000 11123443332210 01
Q ss_pred --EecCeEEEEEeCCCCCCchHHHH----HH--HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCC
Q psy1758 981 --EYNGTRINIIDTPGHADFGGEVE----RI--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRS 1050 (1527)
Q Consensus 981 --~~~~~~iniiDTPGh~df~~ev~----~~--l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~ 1050 (1527)
...++.+.||||||......... .. +..+|.++||+|+..| + ........... .++ .-+|+||+|..
T Consensus 175 ~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg-q-~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 175 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG-Q-EALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT-T-HHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred HHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch-H-HHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 12567899999999765432222 11 2358999999999865 1 22222222121 344 45789999974
No 473
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.44 E-value=0.0029 Score=74.02 Aligned_cols=124 Identities=20% Similarity=0.209 Sum_probs=67.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchh---------hhhc---ccceeEe-eeeE--------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEK---ERGITIF-SKNC-------- 978 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~---------~~E~---erGiTi~-~~~~-------- 978 (1527)
.....|+++|..|+||||++..|...... ..+.+--.-.|.. ..-. ..|+.+. +...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~ 180 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVV 180 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHH
Confidence 34568999999999999999998754110 0111100000100 0001 3344443 1110
Q ss_pred --EEE---ecCeEEEEEeCCCCCCchHHHHHHH------------HhcCEEEEEEeCCCCCChhHHHHHHHHHHc--CCc
Q psy1758 979 --SIE---YNGTRINIIDTPGHADFGGEVERIL------------SMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFK 1039 (1527)
Q Consensus 979 --~~~---~~~~~iniiDTPGh~df~~ev~~~l------------~~aD~ailVVDa~~G~~~qt~~~~~~~~~~--glp 1039 (1527)
.+. ..++.+.||||||...........+ ..+|.+++|+|+..+ ..+ +..+..+ .++
T Consensus 181 ~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~---l~~~~~~~~~~~ 255 (320)
T 1zu4_A 181 FDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNG---VIQAEEFSKVAD 255 (320)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHH---HHHHHHHTTTSC
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHH---HHHHHHHhhcCC
Confidence 000 1478899999999766543322222 137899999999854 222 2223332 244
Q ss_pred c-EEEEeccCCC
Q psy1758 1040 P-IVVVNKIDRS 1050 (1527)
Q Consensus 1040 ~-IvviNKiD~~ 1050 (1527)
+ =+|+||+|..
T Consensus 256 i~GvVltk~d~~ 267 (320)
T 1zu4_A 256 VSGIILTKMDST 267 (320)
T ss_dssp CCEEEEECGGGC
T ss_pred CcEEEEeCCCCC
Confidence 4 3789999964
No 474
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.36 E-value=0.0031 Score=73.17 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=59.0
Q ss_pred HHHhcCEEEEEEeCCCCCChhH--HHHHHHHHHcCCccEEEEeccCCCCCChh-hhHHHHHHHHhhhcccccccCCcEEE
Q psy1758 1005 ILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKLGFKPIVVVNKIDRSNARPE-WVVDATFDLFDKLCATEEQLDFPVIY 1081 (1527)
Q Consensus 1005 ~l~~aD~ailVVDa~~G~~~qt--~~~~~~~~~~glp~IvviNKiD~~~a~~~-~v~~~~~~~~~~l~~~~~~~~~pvi~ 1081 (1527)
.+..+|.+++|+|+.++..... ...+..+...++|+++|+||+|+.+.... +.++++.+.+..+ .+++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-------g~~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-------GYDVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-------TCCEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-------CCeEEE
Confidence 5788999999999997655543 23334445679999999999999754210 2345555555333 357999
Q ss_pred eccccCCcCCCcccccCCChhHHHH
Q psy1758 1082 TSALHGYANENSKARQGNMIPLFEA 1106 (1527)
Q Consensus 1082 ~SA~~g~~~~~~~~~~~gi~~Ll~~ 1106 (1527)
+||.+|. |++.|++.
T Consensus 156 ~sa~~~~----------g~~~L~~~ 170 (307)
T 1t9h_A 156 TSSKDQD----------SLADIIPH 170 (307)
T ss_dssp CCHHHHT----------TCTTTGGG
T ss_pred EecCCCC----------CHHHHHhh
Confidence 9999997 77666543
No 475
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=96.35 E-value=0.012 Score=57.15 Aligned_cols=78 Identities=22% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc
Q psy1758 1120 NPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI 1197 (1527)
Q Consensus 1120 ~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl 1197 (1527)
.|-.+.+..+..--| |.+..|||.+|+|++|+.| +. +. ...+|.+|.. +..++++|.|||.|++ .|.
T Consensus 33 ~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg--~~-~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg~ 101 (116)
T 1xe1_A 33 PAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KG--PS-GIGGIVRIER----NREKVEFAIAGDRIGISIEGK 101 (116)
T ss_dssp CSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---EC--SS-CEEEEEEEEE----TTEEESEEETTCEEEEEEESC
T ss_pred CcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CC--Cc-eEEEEEEEEE----CCcCcCCcCCCCEEEEEEECC
Confidence 355555544222122 7789999999999999998 44 10 2456777664 3468999999999976 454
Q ss_pred e-ecccCCeeeC
Q psy1758 1198 E-EICIGSTICD 1208 (1527)
Q Consensus 1198 ~-~~~iGdTi~~ 1208 (1527)
. +++.||++..
T Consensus 102 ~~~I~~GdVLyv 113 (116)
T 1xe1_A 102 IGKVKKGDVLEI 113 (116)
T ss_dssp CCCCCTTCEEEE
T ss_pred ccccCCCcEEEE
Confidence 3 6777888753
No 476
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.34 E-value=0.0042 Score=71.88 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIR 90 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~ 90 (1527)
.++..|+++|++|+||||++..|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999998774
No 477
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.21 E-value=0.004 Score=72.23 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=57.9
Q ss_pred hhccccCEEEEEEeCCCCCcHHH--HHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEe
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQT--REAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt--~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
..+.++|.+++|+|+.++..... ...+..+...++|.++|+||+|+.+.... .....+... ....+ .+++.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~---y~~~g--~~v~~~ 156 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAED---YRNIG--YDVYLT 156 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHH---HHHHT--CCEEEC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHH---HHhCC--CeEEEE
Confidence 35789999999999997554333 22333445678999999999999864320 111222111 11112 489999
Q ss_pred eccCCCChhHHHHHH
Q psy1758 212 SAKTGVGINKLLENI 226 (1527)
Q Consensus 212 SAktg~gI~eL~~~l 226 (1527)
||++|.|+++|++..
T Consensus 157 sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 157 SSKDQDSLADIIPHF 171 (307)
T ss_dssp CHHHHTTCTTTGGGG
T ss_pred ecCCCCCHHHHHhhc
Confidence 999999999987654
No 478
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.21 E-value=0.0067 Score=73.87 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCChhhH----H-HHHH-hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCC
Q psy1758 114 NHGSITFLDTPGHEAF----T-AMRA-RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKL 181 (1527)
Q Consensus 114 ~~~~i~~iDTPG~e~f----~-~~~~-~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~ 181 (1527)
.++.+.|+||||.-.+ . .+.. ..+..+|.+++|+|+..+. .....+.... ..++ .-+++||+|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~-~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFN-EALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHH-HHSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHh-ccCCCeEEEEecCCCC
Confidence 4567999999995332 1 1111 2245789999999998762 2233333222 2355 35799999964
No 479
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.12 E-value=0.0031 Score=72.99 Aligned_cols=125 Identities=10% Similarity=0.059 Sum_probs=63.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhc----cCc-cc--ccccccceecchhh-hhcccceeEeeee-------EEEEecCeE
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQ----SGT-FR--KNQNINARIMDSNE-IEKERGITIFSKN-------CSIEYNGTR 986 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~----~g~-~~--~~~~~~~~~~D~~~-~E~erGiTi~~~~-------~~~~~~~~~ 986 (1527)
...|+++|+.|+||||++..|... .|. +. ..........+... .....|+.+.... .--...++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 357999999999999999999743 221 00 00000000000000 0011222211100 000125678
Q ss_pred EEEEeCCCCCCchHHHH----HHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcC-Cc-cEEEEeccCCC
Q psy1758 987 INIIDTPGHADFGGEVE----RILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLG-FK-PIVVVNKIDRS 1050 (1527)
Q Consensus 987 iniiDTPGh~df~~ev~----~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~g-lp-~IvviNKiD~~ 1050 (1527)
+.|+||||......... ..+. ..|.+++|+|++.+. + .+.+.+.... ++ .-+++||+|..
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~--~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--E--DMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--H--HHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--H--HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 99999999766543322 2222 257889999998652 1 1222222221 22 24667999975
No 480
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=96.07 E-value=0.0032 Score=69.98 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=55.9
Q ss_pred eeEEEEeCCCCCCHH-------HHHHHHHHHhc-cccccccCCCCCCCeEEEEEEecccc--ccccccc--CCCcEEEEE
Q psy1758 663 HGVLLLDKPYGLSSN-------NALKKIKYLLN-AKKVGYTGTLDPFATGLLPLCFGEAT--KFSNYLS--EADKYYEAI 730 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~-------~~~~~~~~~~~-~~kvgh~gtLdp~a~Gvl~~~~g~~t--k~~~~~~--~~~K~Y~~~ 730 (1527)
+.+++||||+|+.+| .++..++..++ ..+++..|.||..+||||+++-+..+ +|...+. .-.|+|.|.
T Consensus 9 ~~~lvvnKP~G~~~~~~~~~~~~l~~~l~~~~~~~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~ 88 (228)
T 1v9k_A 9 DHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 88 (228)
T ss_dssp SSEEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEEECCCCCeEecCCChHHHHHHHHHHHcCCCCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEE
Confidence 458999999999987 47888877665 35789999999999999999987653 3455443 468999998
Q ss_pred EE
Q psy1758 731 IH 732 (1527)
Q Consensus 731 ~~ 732 (1527)
+.
T Consensus 89 v~ 90 (228)
T 1v9k_A 89 VR 90 (228)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 481
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.04 E-value=0.0061 Score=74.16 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+-..|+|+|.+++|||||+|+|.+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4467999999999999999999753
No 482
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.00 E-value=0.0039 Score=72.38 Aligned_cols=147 Identities=17% Similarity=0.213 Sum_probs=74.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchh---------hhhcccceeEeeeeE----------EE-
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNC----------SI- 980 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~---------~~E~erGiTi~~~~~----------~~- 980 (1527)
....|+|+|++|+||||++..|...... ..+.+.---.|.. ..-...|+.+..... .+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4567999999999999999999754110 0111100000000 001122333321100 00
Q ss_pred --EecCeEEEEEeCCCCCCchHHHHHH-------H-----HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEe
Q psy1758 981 --EYNGTRINIIDTPGHADFGGEVERI-------L-----SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVN 1045 (1527)
Q Consensus 981 --~~~~~~iniiDTPGh~df~~ev~~~-------l-----~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviN 1045 (1527)
...++.+.|+||||.......+... + ..+|.++||+|+..+ .......+...+ ..+ .-+|+|
T Consensus 181 ~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~-~~~i~gvVlT 257 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKE-AVNVTGIILT 257 (306)
T ss_dssp HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHH-HSCCCEEEEE
T ss_pred HHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHh-cCCCCEEEEe
Confidence 1246789999999975544433221 1 137899999999743 111111222222 133 346789
Q ss_pred ccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEEecc
Q psy1758 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSA 1084 (1527)
Q Consensus 1046 KiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA 1084 (1527)
|+|.. +....+++-... ...|+.|++.
T Consensus 258 k~D~~-~~gG~~l~~~~~-----------~~~Pi~~i~~ 284 (306)
T 1vma_A 258 KLDGT-AKGGITLAIARE-----------LGIPIKFIGV 284 (306)
T ss_dssp CGGGC-SCTTHHHHHHHH-----------HCCCEEEEEC
T ss_pred CCCCc-cchHHHHHHHHH-----------HCCCEEEEeC
Confidence 99974 333333322211 2458888754
No 483
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=95.74 E-value=0.016 Score=56.18 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=52.8
Q ss_pred eEeEEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhh
Q psy1758 473 LGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIEN 547 (1527)
Q Consensus 473 ~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~ 547 (1527)
.|.-.|+.+|..-=.+.++| +|..|.|+.|.++ +++- ..|+|.||+..+++|+++.+|+++++.++...
T Consensus 34 P~k~~ilp~~~~vFgpvivG-rVe~G~LK~G~~V----Pg~~-~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~ 102 (116)
T 1xe1_A 34 AGKVVVEEVVNIMGKDVIIG-TVESGMIGVGFKV----KGPS-GIGGIVRIERNREKVEFAIAGDRIGISIEGKI 102 (116)
T ss_dssp SEEEEEEEEEEETTEEEEEE-EEEEEEEETTCEE----ECSS-CEEEEEEEEETTEEESEEETTCEEEEEEESCC
T ss_pred cEEEEEEecCCeEECCeeEE-EEeEEEEcCCCCc----CCCc-eEEEEEEEEECCcCcCCcCCCCEEEEEEECCc
Confidence 35556666322211347889 9999999999997 3331 36889999999999999999999999998743
No 484
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.68 E-value=0.017 Score=70.20 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
.+.--|+|+|.+++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35567999999999999999999975
No 485
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.59 E-value=0.023 Score=65.93 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
++-.|+++|++|+||||++..|..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 445789999999999999987753
No 486
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=95.49 E-value=0.0055 Score=67.97 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=46.1
Q ss_pred eEEEEeCCCCCCHHH-------HHHHHHHHhccccccccCCCCCCCeEEEEEEeccc--ccccccccCCCcEEEEEEE
Q psy1758 664 GVLLLDKPYGLSSNN-------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEA--TKFSNYLSEADKYYEAIIH 732 (1527)
Q Consensus 664 G~~~v~Kp~g~ts~~-------~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~--tk~~~~~~~~~K~Y~~~~~ 732 (1527)
=+|++|||+|+.|+- +++.+.. ..++...|.||-.+||+|+++-... .+|..--....|+|.+.+.
T Consensus 15 ~~lvlnKPaG~vs~~~~~~~~tv~dll~~---~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p~~~v~K~Y~a~V~ 89 (237)
T 2gml_A 15 VLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD 89 (237)
T ss_dssp CEEEEEECTTCBCCSSSSCSSBHHHHSCC---SSCCEEESCCCTTCEEEEEEESCHHHHHHHHHHHHHSCEEEEEEES
T ss_pred EEEEEECCCCCEeCCCCCCCCCHHHHhhc---cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCccCCCCEEEEEEEc
Confidence 379999999996652 3443321 2468899999999999999886432 2233222257899999875
No 487
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.37 E-value=0.054 Score=58.35 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=48.7
Q ss_pred CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEEcccCCc
Q psy1758 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS-----GVPLIVAINKIDKLD 182 (1527)
Q Consensus 115 ~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~-----~vpiIvviNKiDl~~ 182 (1527)
.+.+.++|||+.. .......+..+|.+++++..+... ......+..+... +.++.+|+|++|...
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 3579999999865 234445667799999999998866 6677777766544 467899999999644
No 488
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.36 E-value=0.03 Score=68.59 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
.++-.++|+|..|+|||||+..|.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3456899999999999999998854
No 489
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.33 E-value=0.041 Score=65.02 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=53.5
Q ss_pred hhccccCEEEEEEeCCCCCcHHH-HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQT-REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt-~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
..+.++|.+++|.+..-...... ...+..+...++|.++|+||+|+.+.........+... .... .++++.+||
T Consensus 126 ~i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~---y~~~--G~~v~~~Sa 200 (358)
T 2rcn_A 126 PIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDI---YRNI--GYRVLMVSS 200 (358)
T ss_dssp EEEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHH---HHTT--TCCEEECBT
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHH---HHhC--CCcEEEEec
Confidence 34688999998765432222222 22333445678999999999999864321111122111 1111 257999999
Q ss_pred cCCCChhHHHHHH
Q psy1758 214 KTGVGINKLLENI 226 (1527)
Q Consensus 214 ktg~gI~eL~~~l 226 (1527)
++|.|+++|...+
T Consensus 201 ~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 201 HTQDGLKPLEEAL 213 (358)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHHhc
Confidence 9999999887643
No 490
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.32 E-value=0.011 Score=68.18 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=65.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhcc----Cccccccc-cc-ceecchh-hhhcccceeEeeeeE-----E--------E
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQS----GTFRKNQN-IN-ARIMDSN-EIEKERGITIFSKNC-----S--------I 980 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~----g~~~~~~~-~~-~~~~D~~-~~E~erGiTi~~~~~-----~--------~ 980 (1527)
....++++|+.|+||||++..|.... +.+.-.+. .. ....+.. ....+.|+.+.+... . .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999987541 11100000 00 0000000 011122333332100 0 0
Q ss_pred EecCeEEEEEeCCCCCCchHHHHH----HH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCC
Q psy1758 981 EYNGTRINIIDTPGHADFGGEVER----IL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRS 1050 (1527)
Q Consensus 981 ~~~~~~iniiDTPGh~df~~ev~~----~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~ 1050 (1527)
...++.+.|+||||.......... .. ..+|.+++|+|+..+ ..+....+.... .+++ -+|+||+|..
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGC
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCC
Confidence 014688999999986544322222 11 258999999998753 222222222221 2443 4789999975
No 491
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.10 E-value=0.033 Score=65.00 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=38.0
Q ss_pred CeEEEEEeCCChhhHH----HHHH---hh-----ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCC
Q psy1758 115 HGSITFLDTPGHEAFT----AMRA---RG-----AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKL 181 (1527)
Q Consensus 115 ~~~i~~iDTPG~e~f~----~~~~---~~-----~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~ 181 (1527)
++.+.|+||||.-... .... +. ...+|.+++|+++..+ ....+.+.... ...+ .=+++||+|..
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~-~~~~i~GvVltk~d~~ 267 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFS-KVADVSGIILTKMDST 267 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHT-TTSCCCEEEEECGGGC
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHh-hcCCCcEEEEeCCCCC
Confidence 4579999999943321 1111 11 1347999999999854 33333333322 1234 34789999964
Q ss_pred c
Q psy1758 182 D 182 (1527)
Q Consensus 182 ~ 182 (1527)
.
T Consensus 268 ~ 268 (320)
T 1zu4_A 268 S 268 (320)
T ss_dssp S
T ss_pred C
Confidence 3
No 492
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.00 E-value=0.046 Score=64.57 Aligned_cols=83 Identities=23% Similarity=0.371 Sum_probs=52.9
Q ss_pred HHHhcCEEEEEEeCCCCCChhHHH---HHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEE
Q psy1758 1005 ILSMVDNVLLLIDAVEGPMPQTRF---VTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 1081 (1527)
Q Consensus 1005 ~l~~aD~ailVVDa~~G~~~qt~~---~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~ 1081 (1527)
.+..+|.+++| ||.. +...... .+..+...++|+++|+||+|+.+....+.+++....|. ...+|+++
T Consensus 127 i~anvD~v~iv-~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-------~~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIV-SAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-------NIGYRVLM 197 (358)
T ss_dssp EEECCCEEEEE-EEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-------TTTCCEEE
T ss_pred HHhcCCEEEEE-EeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH-------hCCCcEEE
Confidence 35789999866 5655 3333333 33445567999999999999975321111333333332 23568999
Q ss_pred eccccCCcCCCcccccCCChhHHHH
Q psy1758 1082 TSALHGYANENSKARQGNMIPLFEA 1106 (1527)
Q Consensus 1082 ~SA~~g~~~~~~~~~~~gi~~Ll~~ 1106 (1527)
+||.+|. |++.|...
T Consensus 198 ~Sa~~~~----------gl~~L~~~ 212 (358)
T 2rcn_A 198 VSSHTQD----------GLKPLEEA 212 (358)
T ss_dssp CBTTTTB----------THHHHHHH
T ss_pred EecCCCc----------CHHHHHHh
Confidence 9999998 77766654
No 493
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.64 E-value=0.021 Score=69.09 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=38.7
Q ss_pred CCeEEEEEeCCChhh----HHHHHH--hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCC
Q psy1758 114 NHGSITFLDTPGHEA----FTAMRA--RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKL 181 (1527)
Q Consensus 114 ~~~~i~~iDTPG~e~----f~~~~~--~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~ 181 (1527)
.++.+.|+||||.-. ...... ..+..+|.+++|+|+..+ ......+..... .++ .-+++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 345799999999422 111111 122358999999999865 233333333322 244 56789999964
No 494
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=94.43 E-value=0.0094 Score=66.86 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=49.4
Q ss_pred EEEEeCCCCCCHH-------HHHHHHHHHhccccccccCCCCCCCeEEEEEEecc--cccccccccCCCcEEEEEEE
Q psy1758 665 VLLLDKPYGLSSN-------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE--ATKFSNYLSEADKYYEAIIH 732 (1527)
Q Consensus 665 ~~~v~Kp~g~ts~-------~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~--~tk~~~~~~~~~K~Y~~~~~ 732 (1527)
+++||||+|+.++ .+.+.++..+. .+++..|.||..+||||+++-+. +.+++.--..-.|+|.|.+.
T Consensus 64 ~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~~~~~v~K~Y~a~v~ 139 (243)
T 1vio_A 64 YFMLNKPQGCVCSNDDGDYPTIYQFFDYPLA-GKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLA 139 (243)
T ss_dssp EEEEEECTTCBSSCCC--CCBGGGGSCTTGG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred EEEEECCCCCEeCCCCCCCCcHHHHHhHHhc-CCEeEccCCCCCCeEEEEEEECHHHHHHHhCCCCCCCEEEEEEEe
Confidence 8999999999887 23444433322 36889999999999999999875 34444433357899999875
No 495
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.42 E-value=0.087 Score=60.96 Aligned_cols=133 Identities=19% Similarity=0.211 Sum_probs=70.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc----cCcccccccccceecchh-----h-hhcccceeEeeeeEE-EE--------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARIMDSN-----E-IEKERGITIFSKNCS-IE-------- 981 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~----~g~~~~~~~~~~~~~D~~-----~-~E~erGiTi~~~~~~-~~-------- 981 (1527)
....++++|+.|+|||||+..|.+. .|.+.-.+. ...... . .-..+++.+...... ..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~---d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~ 175 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG---DTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 175 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC---CCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee---cccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHH
Confidence 4567999999999999999999764 222111000 000000 0 001234444332221 10
Q ss_pred -----ecCeEEEEEeCCCCCCchHHHHH-------HH-----HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEE
Q psy1758 982 -----YNGTRINIIDTPGHADFGGEVER-------IL-----SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 1044 (1527)
Q Consensus 982 -----~~~~~iniiDTPGh~df~~ev~~-------~l-----~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~Ivvi 1044 (1527)
..++...++||.|..++...... ++ ...+-++||+|++.|..+... ........++ .++++
T Consensus 176 l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~-t~iii 253 (302)
T 3b9q_A 176 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLIL 253 (302)
T ss_dssp HHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEE
T ss_pred HHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCC-CEEEE
Confidence 12344678999997664432221 11 235677999998877655433 2222234454 46778
Q ss_pred eccCCCCCChhhhHH
Q psy1758 1045 NKIDRSNARPEWVVD 1059 (1527)
Q Consensus 1045 NKiD~~~a~~~~v~~ 1059 (1527)
+|+|-. +.....+.
T Consensus 254 ThlD~~-~~~g~~l~ 267 (302)
T 3b9q_A 254 TKLDGS-ARGGCVVS 267 (302)
T ss_dssp ECCSSC-SCTHHHHH
T ss_pred eCCCCC-CccChhee
Confidence 999864 44444433
No 496
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.42 E-value=0.057 Score=62.55 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
++-.|+++|++|+|||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999998853
No 497
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=94.15 E-value=0.011 Score=66.03 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=50.4
Q ss_pred eeEEEEeCCCCCCHHH-------HHHHHHHHhccccccccCCCCCCCeEEEEEEecc--cccccccccCCCcEEEEEEE
Q psy1758 663 HGVLLLDKPYGLSSNN-------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE--ATKFSNYLSEADKYYEAIIH 732 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~~-------~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~--~tk~~~~~~~~~K~Y~~~~~ 732 (1527)
+-+++||||+|+.+|. +.+.+...++ .+++..|.||-.+||+|+++-+. +.++..--..-.|+|.|.+.
T Consensus 63 ~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~ 140 (234)
T 1ksk_A 63 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLE 140 (234)
T ss_dssp CCEEEEEECTTCBSSSSCSSSCBGGGGCCCTTG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred CEEEEEECCCCCEeCCCCCCCCcHHHHhhhhhc-CCeeEcCCCCCCCeeEEEEEcCHHHHHHHhCCCCCCCeEEEEEEc
Confidence 4589999999998763 3444433322 36889999999999999999875 34454433457899999875
No 498
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=94.00 E-value=0.078 Score=50.07 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=63.4
Q ss_pred eEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCC-cCcceeeeEEEeecCceeEeeeeecCCEEEEe--cceec
Q psy1758 1124 LQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDK-PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIEEI 1200 (1527)
Q Consensus 1124 ~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~-~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl~~~ 1200 (1527)
+.|-.++..+..|.+|-.+|.+|.++.+..+.+++. |. ..+.++.+|..+. .++.++.+|.-|.|. +..|+
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd--~~vI~eG~i~SLkr~K----ddV~EV~~G~ECGi~l~~~~di 82 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQ--GIVVYEGEIDSLKRYK----DDVREVAQGYECGLTIKNFNDI 82 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECS--SSEEEEEECSEEECSS----SCCSCCBTTCEEEEECTTCSSC
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEEC--CEEEEEeEEhhhcccc----cccceECCCcEEEEEEcCcCCC
Confidence 345556666788999999999999999999999986 43 2446788887664 579999999999774 56799
Q ss_pred ccCCeeeC
Q psy1758 1201 CIGSTICD 1208 (1527)
Q Consensus 1201 ~iGdTi~~ 1208 (1527)
+.||.|-.
T Consensus 83 k~GD~Ie~ 90 (99)
T 1d1n_A 83 KEGDVIEA 90 (99)
T ss_dssp SSCSEEEE
T ss_pred CCCCEEEE
Confidence 99999843
No 499
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=93.84 E-value=0.031 Score=61.53 Aligned_cols=70 Identities=21% Similarity=0.351 Sum_probs=53.1
Q ss_pred eeEEEEeCCCCCCHHH---------HHHHHHHHhccccccccCCCCCCCeEEEEEEeccc-c-ccccccc--CCCcEEEE
Q psy1758 663 HGVLLLDKPYGLSSNN---------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEA-T-KFSNYLS--EADKYYEA 729 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~~---------~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~-t-k~~~~~~--~~~K~Y~~ 729 (1527)
+.+++||||+|+-+|. +++.++..+. +++..|.||-..||+|+++-+.. . +|...+. .-.|+|.|
T Consensus 19 ~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~~--~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a 96 (217)
T 2i82_A 19 DHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVA 96 (217)
T ss_dssp SSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHCT--TCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHCC--CCceeecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEE
Confidence 5689999999997652 5666766553 67899999999999999998664 3 3444343 56899999
Q ss_pred EEEECc
Q psy1758 730 IIHLGI 735 (1527)
Q Consensus 730 ~~~~G~ 735 (1527)
.+. |.
T Consensus 97 ~v~-G~ 101 (217)
T 2i82_A 97 RVW-GH 101 (217)
T ss_dssp EEE-SC
T ss_pred EEe-cc
Confidence 876 44
No 500
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.74 E-value=0.048 Score=59.46 Aligned_cols=120 Identities=15% Similarity=0.031 Sum_probs=0.0
Q ss_pred EEEEE-ecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEe----------------------CCeEEEEEeCCCh-
Q psy1758 71 IVTIM-GHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT----------------------NHGSITFLDTPGH- 126 (1527)
Q Consensus 71 ~V~Iv-G~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~----------------------~~~~i~~iDTPG~- 126 (1527)
+|++. +..|+||||+.-.|...-...+ .-.-.|.....-.. ..+.+.++|||+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g--~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~ 79 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG--ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARP 79 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS--CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC--CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCc
Q ss_pred hhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHc-CCCEEEEEEcccCCc-chhHHHHHHHhh
Q psy1758 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS-GVPLIVAINKIDKLD-INLDRIKQDLIS 194 (1527)
Q Consensus 127 e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~-~vpiIvviNKiDl~~-~~~~~~~~~l~~ 194 (1527)
... .....+..+|.+|+++..+..........+..+... +.++.+++|++|... ....+..+.+.+
T Consensus 80 ~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~ 147 (209)
T 3cwq_A 80 EDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTT 147 (209)
T ss_dssp SSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHH
T ss_pred CcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHH
Done!