RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1758
(1527 letters)
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 810 bits (2094), Expect = 0.0
Identities = 272/472 (57%), Positives = 367/472 (77%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE 127
RAP+VTIMGHVDHGKTSLL+YIR T V EAGGITQHIGAY+V T +G ITFLDTPGH
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHA 62
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
AFT+MRARGA+ TDIVVLVVAADDGVMPQT EAI HAK + VP++VA+NKIDK + + DR
Sbjct: 63 AFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDR 122
Query: 188 IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVI 247
+K +L ++PEE+GG S F+ +SAK G GI++LL+ I LQAE+LELKA A G +
Sbjct: 123 VKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAV 182
Query: 248 IESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQ 307
IES LDKG+GPVATVL++ GTL DIV+ G YGR+R+M NE G+ +LEAGPSIPVEI
Sbjct: 183 IESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEIL 242
Query: 308 GLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNL 367
GL+ VP +G+E+ V+ +EKKARE+ L+RQGKFR+VKL++Q+ K ENMF ++ + +V +
Sbjct: 243 GLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEV 302
Query: 368 LIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVR 427
I++K DV GS E +++SL LSTD+VK+++I + VG I E+D LA AS AI++GFNVR
Sbjct: 303 NIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVR 362
Query: 428 ADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQVILVNKV 487
ADAS RK+ + ++++RY+++IYN+I E+K+ ++ ++ E K+ ++GLAE+R V K
Sbjct: 363 ADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKF 422
Query: 488 SKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
IAGC + EG+++R + IR+LR+ +I+ GEL+SL+RFKD+V EV+ G EC
Sbjct: 423 GAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMEC 474
Score = 65.6 bits (161), Expect = 7e-11
Identities = 47/135 (34%), Positives = 65/135 (48%), Gaps = 24/135 (17%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKER-GIT--IFSKNCSIEYN 983
I+ HVDHGKT+L+++ I + E GIT I + + +E
Sbjct: 9 IMGHVDHGKTSLLEY-----------------IRSTKVASGEAGGITQHIGAYH--VETE 49
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
I +DTPGHA F R D V+L++ A +G MPQT + A K P+VV
Sbjct: 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHA-KAAQVPVVV 108
Query: 1044 -VNKIDRSNARPEWV 1057
VNKID+ A P+ V
Sbjct: 109 AVNKIDKPEADPDRV 123
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 755 bits (1951), Expect = 0.0
Identities = 206/514 (40%), Positives = 304/514 (59%), Gaps = 42/514 (8%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGH 126
R+P+VTIMGHVDHGKT+LLD +RKT V EAGGITQHIGA+ V G ITFLDTPGH
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH 62
Query: 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
AF+AMRARG +VTDIV+LVVAADDGVM QT E+I HAK + VP+++AINK DK + + +
Sbjct: 63 AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE 122
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGV 246
++K++L++ V+ E+YGG + +SA TG + L E AE+LELKA T +G
Sbjct: 123 KVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGT 182
Query: 247 IIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEI 306
+IES DKG+GPV T +IQ GTLR I+VAG S+ ++R M +ENG+ + EA PS+PV I
Sbjct: 183 VIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSMPVGI 242
Query: 307 QGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMF---------- 356
G +P +G+E+ + +E +ARE+ +R+ + K + E
Sbjct: 243 IGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDR 302
Query: 357 ---------------------------NDINKEKVKNLLIIIKTDVYGSREVLTESLKNL 389
+ + L +I+K DV GS E + +
Sbjct: 303 EKYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTY 362
Query: 390 -STDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNI 448
++ + ++ ++H VG+I+E+D+NLA +I GFNV A ++LA + I+ H I
Sbjct: 363 DASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVNAGNVIQQLAAKKGVKIKLHKI 422
Query: 449 IYNIIKEIKSEITNLIPLEKKENLLGLAEIRQVILVN---KVSKIAGCYILEGLIRRDSK 505
IY +I++++ E+++ +P +E+ +G A I + K +AGC + +G I + K
Sbjct: 423 IYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKK 482
Query: 506 IRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
+++RN ++IW G L SLK KD+ VK G +C
Sbjct: 483 FKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDC 516
Score = 68.8 bits (169), Expect = 8e-12
Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 39/140 (27%)
Query: 930 HVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERG-IT--I--FSKNCSIEYNG 984
HVDHGKTTL+D L RK + E G IT I F + +G
Sbjct: 12 HVDHGKTTLLDKL-------RK----------TQVAAMEAGGITQHIGAFLVSLP---SG 51
Query: 985 TRINIIDTPGHADFGGEVERILSM-------VDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
+I +DTPGHA F +M D V+L++ A +G M QT + A
Sbjct: 52 EKITFLDTPGHAAF-------SAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAH 104
Query: 1038 FKPIVVVNKIDRSNARPEWV 1057
++ +NK D++ A PE V
Sbjct: 105 VPIVLAINKCDKAEADPEKV 124
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 559 bits (1442), Expect = 0.0
Identities = 139/555 (25%), Positives = 238/555 (42%), Gaps = 83/555 (14%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS---------- 117
R+PIV+++GHVDHGKT+LLD+IR + V EAGGITQHIGA + +
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKF 63
Query: 118 --------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV 169
+ F+DTPGHEAFT +R RG + D+ +L+V ++G PQT+EA+ ++
Sbjct: 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123
Query: 170 PLIVAINKIDKL--------------------------DINLDRIKQDLISEQVIPEEY- 202
P +VA NKID++ D + + L E E +
Sbjct: 124 PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFD 183
Query: 203 -----GGASPFISISAKTGVGINKLLENISLQAEIL---ELKAPVTTPAKGVIIESRLDK 254
I ISA TG GI +LL + A+ +LK +PA+G I+E + +
Sbjct: 184 RVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEET 243
Query: 255 GKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNI-LEAGPSIPVEIQGLTKVP 313
G G +I G LR D + S I + + K LE + Q + +V
Sbjct: 244 GLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVV 303
Query: 314 FSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKT 373
+ V R V ++ + + DI + +++K
Sbjct: 304 AAAGIKIVAPGIDDVMAG-----SPLRVVTDPEKVREEILSEIEDIKID-TDEAGVVVKA 357
Query: 374 DVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASK------AIIIGFNVR 427
D GS E + + L+ + + + +G+++ D+ A + II FNV+
Sbjct: 358 DTLGSLEAVVKILR-----DMYVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVK 412
Query: 428 ADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKK---ENLLGLAEIRQV--- 481
S + + ++I + N+IY +++E + + + +KK E ++ A IR +
Sbjct: 413 VIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKL 472
Query: 482 ILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECER 541
+ I G +L G+IR+ + + + G ++S++ +N+K G +
Sbjct: 473 VFRQSKPAIGGVEVLTGVIRQGYPLMNDDGETV---GTVESMQDKGENLKSASRGQKVA- 528
Query: 542 LSRIEN-QIQRDISE 555
I++ + I E
Sbjct: 529 -MAIKDAVYGKTIHE 542
Score = 68.5 bits (168), Expect = 1e-11
Identities = 51/139 (36%), Positives = 67/139 (48%), Gaps = 36/139 (25%)
Query: 930 HVDHGKTTLIDHLLRQSG---------TFRKNQNINARIMDSNEIEKERGITIFSKNCSI 980
HVDHGKTTL+DH +R S T Q+I A + + IE G F K SI
Sbjct: 13 HVDHGKTTLLDH-IRGSAVASREAGGIT----QHIGATEIPMDVIEGICG--DFLKKFSI 65
Query: 981 EYNGTRINIIDTPGHADF------GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKAL 1034
+ IDTPGH F GG ++ D +L++D EG PQ T++AL
Sbjct: 66 RETLPGLFFIDTPGHEAFTTLRKRGG------ALADLAILIVDINEGFKPQ----TQEAL 115
Query: 1035 KL--GFK-PIVV-VNKIDR 1049
+ ++ P VV NKIDR
Sbjct: 116 NILRMYRTPFVVAANKIDR 134
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative,
midwest center for structural genomics, GTP-BIN
nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio
parahaemolyticus}
Length = 332
Score = 460 bits (1186), Expect = e-150
Identities = 177/328 (53%), Positives = 240/328 (73%), Gaps = 4/328 (1%)
Query: 1194 ITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRL 1253
TG+ E+ I TIC + LP L++DEPT+T+ F VN SP AG EG F+T+R I RL
Sbjct: 3 ATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERL 62
Query: 1254 DHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNG 1313
+ E+ +N+ LRV Q D + VSGRGELHL+ILIENMRREG+EL+VSRP VI +G
Sbjct: 63 EKELVHNVALRVEQTDDPDK-FRVSGRGELHLSILIENMRREGFELAVSRPEVIIXEEDG 121
Query: 1314 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNE 1373
+L EP+E + +D+ E +QG IM+ + R G+L ++ + K RVR+++ +PSRGLIGFQ E
Sbjct: 122 QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTE 181
Query: 1374 FITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLF 1433
F+TLT G+GL+ H F+ Y P ++G+R NGVLI+ +GKA+ +L+ LQ+RGRLF
Sbjct: 182 FMTLTSGSGLLYHTFDHYGPH---XGGNIGQRVNGVLIANAAGKALTNALFNLQERGRLF 238
Query: 1434 INHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLISPIKITLEYAIEF 1493
I H VYEGM+IGIHSRDNDL VN +K KQLTN+R+SG+D+A L PI +TLE A+EF
Sbjct: 239 IGHGVEVYEGMVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVMTLEQALEF 298
Query: 1494 INDDELVEITPKNIRLRKRFLKENERKK 1521
I+DDELVE+TP++IR+RK FL E++R +
Sbjct: 299 IDDDELVEVTPESIRIRKXFLTESDRXR 326
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop,
lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli}
SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Length = 327
Score = 356 bits (917), Expect = e-112
Identities = 117/276 (42%), Positives = 168/276 (60%), Gaps = 11/276 (3%)
Query: 651 MQFHIKKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCF 710
HI+ I+GVLLLDKP G+SSN+AL+K+K + NA + G+TG LDP ATG+LP+C
Sbjct: 13 SSGHIEGRHMDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 72
Query: 711 GEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGK 770
GEATKFS YL ++DK Y I LG T+T D +G+I++ + + S E + L F G
Sbjct: 73 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGD 131
Query: 771 ISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGT 830
I QIP MYSALKY+G LY+YAR GI + R+ R I +Y++ I + L L IHCSKGT
Sbjct: 132 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 191
Query: 831 YIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISS-------- 882
YIR + +D+G+ LGCGAH+ YLRR+ + K +++ + ++ + + E
Sbjct: 192 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 251
Query: 883 --LIPIDILLSSFGIIYLSDLLSKRFLHGQNLFLSD 916
L+P+D S + ++ L S F +G + S
Sbjct: 252 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG 287
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 344 bits (884), Expect = e-110
Identities = 113/175 (64%), Positives = 136/175 (77%)
Query: 63 AESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLD 122
+ + R P+VTIMGHVDHGKT+LLD IR + V EAGGITQHIGAY V N ITFLD
Sbjct: 2 SHMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLD 61
Query: 123 TPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD 182
TPGHEAFT MRARGA+VTDIV+LVVAADDGVMPQT EAI HAK + VP+IVAINK+DK +
Sbjct: 62 TPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121
Query: 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKA 237
N DR+ Q+L+ ++PEE+GG + F +SAKT G++ LLE I L +E+ ELKA
Sbjct: 122 ANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELKA 176
Score = 75.0 bits (185), Expect = 2e-15
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERG-ITIFSKNCSIEYNGT 985
I+ HVDHGKTTL+D I S E+E G IT + N
Sbjct: 13 IMGHVDHGKTTLLD-----------------AIRHSKVTEQEAGGITQHIGAYQVTVNDK 55
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
+I +DTPGH F R + D V+L++ A +G MPQT A IV +N
Sbjct: 56 KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAIN 115
Query: 1046 KIDRSNARPEWV 1057
K+D+ A P+ V
Sbjct: 116 KMDKPEANPDRV 127
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation,
lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima}
SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Length = 309
Score = 344 bits (886), Expect = e-108
Identities = 85/256 (33%), Positives = 139/256 (54%), Gaps = 4/256 (1%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
+ HG+L+ KP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ +
Sbjct: 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFY 60
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
+ K Y + LG+ TET DI G++++ + + E I + + +F G+ Q+PP YSA
Sbjct: 61 KDLKKVYWVKMRLGLITETFDITGEVVE-ERECNVTEEEIREAIFSFVGEYDQVPPAYSA 119
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
KYKG LYK AR G I + +KI+KI ++ ++ R+ S GTYIR L DIG
Sbjct: 120 KKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIG 179
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSD 900
LGCGA L R + T+++ LN+ + E + +IP++ L + +
Sbjct: 180 YKLGCGATAVELVRESVGPHTIEESLNVFEA---APEEIENRIIPLEKCLEWLPRVVVHQ 236
Query: 901 LLSKRFLHGQNLFLSD 916
+K L+G + L
Sbjct: 237 ESTKMILNGSQIHLEM 252
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification,
structural genomics, PSI, structure initiative; 1.90A
{Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Length = 316
Score = 327 bits (840), Expect = e-102
Identities = 80/255 (31%), Positives = 134/255 (52%), Gaps = 8/255 (3%)
Query: 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 721
G++++DKP G++S++ + + + + ++VG+ GTLDP ATG+L + ATK L+
Sbjct: 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64
Query: 722 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSAL 781
A K Y A I LG TT T D EG+++ +IE I+ + G+I Q+P SA+
Sbjct: 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124
Query: 782 KYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT----IPYLTLRIHCSKGTYIRVLSE 837
K G Y+ AR G +++ + R I+I + ++ + + + I CS GTYIR L+
Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184
Query: 838 DIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIY 897
D+G LG G H+ LRR + + LD+ ++D + SL + L F
Sbjct: 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDL----AERPALSLSLDEACLLMFARRD 240
Query: 898 LSDLLSKRFLHGQNL 912
L+ + +G++L
Sbjct: 241 LTAAEASAAANGRSL 255
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex,
box H/ACA, snoRNP, pseudouridine synthase, RNA
modification; 1.95A {Methanocaldococcus jannaschii}
SCOP: b.122.1.1 d.265.1.2
Length = 357
Score = 270 bits (692), Expect = 4e-81
Identities = 71/264 (26%), Positives = 114/264 (43%), Gaps = 43/264 (16%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I +GV+++DKP G +S+ +K +LN K G+ GTLDP TG+LP+ ATK
Sbjct: 64 IKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMW 123
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
K Y ++HL D I ++ F G+I Q PP+ +A
Sbjct: 124 HIPPKEYVCLMHLHRDASEED------------------ILRVFKEFTGRIYQRPPLKAA 165
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
+ KR+LR KI+++ ++D + R+ C GTYIR L EDIG
Sbjct: 166 V-----------------KRRLRIRKIHELELLDKDGKDVLFRVKCQSGTYIRKLCEDIG 208
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIK----YSEYERISSL----IPIDILLSS 892
+ LG AH++ LRR + + ++ + E L P++ L
Sbjct: 209 EALGTSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRH 268
Query: 893 FGIIYLSDLLSKRFLHGQNLFLSD 916
+ + D HG ++++
Sbjct: 269 LKKVVVKDSAVDAICHGADVYVRG 292
>2aus_C Pseudouridine synthase; isomerase, structural protein,
isomerase-structural protein; 2.10A {Pyrococcus abyssi}
PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A*
2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Length = 334
Score = 264 bits (676), Expect = 4e-79
Identities = 79/265 (29%), Positives = 117/265 (44%), Gaps = 44/265 (16%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I +GV+ LDKP G +S+ + IK +LN +K G+ GTLDP +G+LP+ AT+ L
Sbjct: 44 IQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQAL 103
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
A K Y A++HL GD+ + I ++ F G+I Q PP+ SA
Sbjct: 104 LPAGKEYVALMHLH-----GDVPE-------------DKIRAVMKEFEGEIIQRPPLRSA 145
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
+ KR+LR K+Y I I++ + R+ GTYIR L IG
Sbjct: 146 V-----------------KRRLRTRKVYYIEILEIDGRDVLFRVGVEAGTYIRSLIHHIG 188
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLN-----IDTIIKYSEYERISSL----IPIDILLS 891
LG GAH+ LRR D+ L +D + E + P++ +
Sbjct: 189 LALGVGAHMAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEEYIRKAIQPMEKAVE 248
Query: 892 SFGIIYLSDLLSKRFLHGQNLFLSD 916
I++ D HG NL +
Sbjct: 249 HLPKIWIKDSAVAAVAHGANLTVPG 273
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase,
pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
cerevisiae} PDB: 3uai_A
Length = 400
Score = 245 bits (628), Expect = 5e-72
Identities = 68/267 (25%), Positives = 108/267 (40%), Gaps = 45/267 (16%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I GV+ LDKP SS+ + IK +L +K G++GTLDP TG L +C AT+
Sbjct: 57 ISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQ 116
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
A K Y I+ L + + + L N G + Q PP+ SA
Sbjct: 117 QGAGKEYVCIVRLHDALKDEK-----------------DLGRSLENLTGALFQRPPLISA 159
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP--YLTLRIHCSKGTYIRVLSED 838
+KR+LR IY+ +I++ C GTY+R L
Sbjct: 160 -----------------VKRQLRVRTIYESNLIEFDNKRNLGVFWASCEAGTYMRTLCVH 202
Query: 839 IGKMLGCGAHLKYLRRIGIDKLTL-DKCLNIDTIIKYSEYERISS--------LIPIDIL 889
+G +LG G H++ LRR+ L+ D + + ++ + + P++ L
Sbjct: 203 LGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVYDNTRDESYLRSIIQPLETL 262
Query: 890 LSSFGIIYLSDLLSKRFLHGQNLFLSD 916
L + I + D +G L +
Sbjct: 263 LVGYKRIVVKDSAVNAVCYGAKLMIPG 289
>1z9b_A Translation initiation factor IF-2; protein synthesis translation
intiation IF2 FMet-tRNA structure; NMR {Geobacillus
stearothermophilus}
Length = 135
Score = 175 bits (445), Expect = 5e-51
Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Query: 324 NEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLT 383
NE + G R + S + +++F I + ++K L +I+K DV GS E L
Sbjct: 1 NEFELGTRGSSRVDLQE--QRSVKTRVSLDDLFEQIKQGEMKELNLIVKADVQGSVEALV 58
Query: 384 ESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINI 443
+L+ + + V++++IH AVG I ESDI+LA AS AI+IGFNVR DA+ ++ A+ ++I
Sbjct: 59 AALQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVIGFNVRPDANAKRAAESEKVDI 118
Query: 444 RYHNIIYNIIKEIKS 458
R H IIYN+I+EI++
Sbjct: 119 RLHRIIYNVIEEIEA 133
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET:
SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1
c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T
2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A*
1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A*
3b78_A* 3b8h_A*
Length = 842
Score = 156 bits (395), Expect = 7e-39
Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 19/165 (11%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
++IAHVDHGK+TL D L++++G + AR D+ + E+ERGITI S S+ +
Sbjct: 23 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 82
Query: 986 R----------------INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFV 1029
IN+ID+PGH DF EV L + D L+++D +EG QT V
Sbjct: 83 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 142
Query: 1030 TRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074
R+AL KP+VV+NK+DR+ + + DL+ T E
Sbjct: 143 LRQALGERIKPVVVINKVDRALLELQVSKE---DLYQTFARTVES 184
Score = 83.5 bits (206), Expect = 3e-16
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 32/153 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------------GIT------------ 103
++++ HVDHGK++L D + + + S A GIT
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 104 --QHIGAYNVVTNHGS--ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTRE 159
+ + T+ S I +D+PGH F++ +VTD ++VV +GV QT
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 141
Query: 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDL 192
+ A + +V INK+D+ + L K+DL
Sbjct: 142 VLRQALGERIKPVVVINKVDRALLELQVSKEDL 174
Score = 62.3 bits (151), Expect = 1e-09
Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 1117 NSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMN-----GPDDKPNKAKIN 1170
+ L L + + +S G+ GR+ +G +KS Q V I G D I
Sbjct: 373 DPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQ 432
Query: 1171 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGS-TICDPSKPNGL-PMLNIDEPTLTIN 1228
++ + G +++ +G+I+ + GI++ + + T+ + + M P + +
Sbjct: 433 RVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVA 492
Query: 1229 FMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 1288
V N A K + + ++ D + + + + V+G GELHL I
Sbjct: 493 VEVKN---ANDLPKLVEGLKRLSKSDPCVLTYM--------SESGEHIVAGTGELHLEIC 541
Query: 1289 IENMRRE--GYELSVSRPRVIFK 1309
++++ + G L +S P V ++
Sbjct: 542 LQDLEHDHAGVPLKISPPVVAYR 564
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 144 bits (365), Expect = 1e-35
Identities = 87/298 (29%), Positives = 138/298 (46%), Gaps = 38/298 (12%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---N 983
IIAHVDHGK+TL D LL +G + + +++D+ ++E+ERGIT+ + + Y +
Sbjct: 11 IIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYKAKD 69
Query: 984 GTR--INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
G +++IDTPGH DF EV R L+ + LLLIDA +G QT KA++ I
Sbjct: 70 GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVII 129
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
V+NKID +A + V ++ EE I SA K G I
Sbjct: 130 PVINKIDLPSADVDRVKKQIEEVLG--LDPEE-----AILASA---------KEGIG--I 171
Query: 1102 P-LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160
+ EAI+ +P K + PL+ I Y Y G + RI G +K +++M+
Sbjct: 172 EEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMS-- 229
Query: 1161 DDKPNKAK--INQIRVFKGLDRVLVNEALSGDI-VLITGIEEIC---IGSTICDPSKP 1212
+ + ++ ++ +GD+ + I+++ IG TI P
Sbjct: 230 ----TGKEYEVTEVGAQT-PKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNP 282
Score = 70.6 bits (174), Expect = 2e-12
Identities = 75/296 (25%), Positives = 123/296 (41%), Gaps = 74/296 (25%)
Query: 74 IMGHVDHGKTSLLD-YIRKTNVVFS---------------EAGGITQHIGAYNVVTNHGS 117
I+ HVDHGK++L D + T + E G IT + V + +
Sbjct: 11 IIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERG-IT--VKMQAVRMFYKA 67
Query: 118 -------ITFLDTPGHEAFT-----AMRA-RGAKVTDIVVLVVAADDGVMPQTR----EA 160
+ +DTPGH F+ A+ A GA +L++ A G+ QT +A
Sbjct: 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGA------LLLIDASQGIEAQTVANFWKA 121
Query: 161 IAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220
+ + +I INKID ++DR+K+ + E+V+ + I SAK G+GI
Sbjct: 122 VEQ----DLVIIPVINKIDLPSADVDRVKKQI--EEVLGLD---PEEAILASAKEGIGIE 172
Query: 221 KLLENISLQAEILELKAPV---TTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVA 277
++LE I + + P P K +I +S D +G VA V I G ++ D
Sbjct: 173 EILEAI-----VNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGD---- 223
Query: 278 GASYGRIRSMLNENGKNILEAGPSIP--VEIQGLTKVPFSGEELFVILNEKKAREI 331
+I M + E G P + L+ +G+ ++ + K R+I
Sbjct: 224 -----KIMLMSTGKEYEVTEVGAQTPKMTKFDKLS----AGDVGYIAASIKDVRDI 270
Score = 32.4 bits (75), Expect = 1.2
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 25/107 (23%)
Query: 1281 GELHLTILIENMRREGYELSV--SRPRVIFK---TLNGELYE---PYE--NLFVDIEEIN 1330
G LH+ I+ E + RE Y + + + P VI++ E+ E P + + IE +
Sbjct: 346 GLLHMEIVQERLERE-YGVKIITTAPNVIYRVKKKFTDEVIEVRNPMDFPDNAGLIEYVE 404
Query: 1331 Q--------------GIIMQKLNYRGGDLKNIEINEKERVRLEYRIP 1363
+ G I+Q + G KN+ + V LEY +P
Sbjct: 405 EPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMP 451
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia coli}
PDB: 3deg_C*
Length = 599
Score = 144 bits (365), Expect = 1e-35
Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 38/298 (12%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---N 983
IIAH+DHGK+TL D +++ G + + A+++DS ++E+ERGITI +++ +++Y +
Sbjct: 9 IIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYKASD 67
Query: 984 GTR--INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
G +N IDTPGH DF EV R L+ + LL++DA +G QT A+++ + +
Sbjct: 68 GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVV 127
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
V+NKID A PE V + D+ + + SA K G +
Sbjct: 128 PVLNKIDLPAADPERVAEEIEDIVG--IDATD-----AVRCSA---------KTGVG--V 169
Query: 1102 P-LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160
+ E +++ +P + + PLQ II + +YLG + + RI +G ++ V +M+
Sbjct: 170 QDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMS-- 227
Query: 1161 DDKPNKAK--INQIRVFKGLDRVLVNEALSGDI-VLITGIEEIC---IGSTICDPSKP 1212
+++ +F +V E G++ L+ I++I +G T+ P
Sbjct: 228 ----TGQTYNADRLGIFT-PKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNP 280
Score = 70.2 bits (173), Expect = 3e-12
Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 72/295 (24%)
Query: 74 IMGHVDHGKTSLLD-YIRKTNVVFS-EAG-------------GITQHIGAYNVVTNHGS- 117
I+ H+DHGK++L D I+ + E GIT I A +V ++ +
Sbjct: 9 IIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT--IKAQSVTLDYKAS 66
Query: 118 ------ITFLDTPGHEAFT-----AMRA-RGAKVTDIVVLVVAADDGVMPQTR----EAI 161
+ F+DTPGH F+ ++ A GA +LVV A GV QT A+
Sbjct: 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGA------LLVVDAGQGVEAQTLANCYTAM 120
Query: 162 AHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221
+ ++ +NKID + +R+ +++ E ++ + A+ + SAKTGVG+
Sbjct: 121 EM----DLEVVPVLNKIDLPAADPERVAEEI--EDIVGID---ATDAVRCSAKTGVGVQD 171
Query: 222 LLENISLQAEILELKAPV---TTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAG 278
+LE + + ++ P P + +II+S D G V+ + I++GTLR D
Sbjct: 172 VLERL-----VRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGD----- 221
Query: 279 ASYGRIRSMLNENGKNILEAGPSIP--VEIQGLTKVPFSGEELFVILNEKKAREI 331
+++ M N G P V+ L GE +++ K
Sbjct: 222 ----KVKVMSTGQTYNADRLGIFTPKQVDRTELK----CGEVGWLVCAIKDIHGA 268
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus
stearothermophilus} SCOP: b.43.3.1
Length = 99
Score = 119 bits (300), Expect = 7e-32
Identities = 37/71 (52%), Positives = 55/71 (77%)
Query: 469 KENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKD 528
+E ++G AE+RQ V+KV IAGCY+ +G I RDSK+R++R +++ GE+DSLKR+KD
Sbjct: 2 EEKVIGQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKD 61
Query: 529 NVKEVKAGFEC 539
+V+EV G+EC
Sbjct: 62 DVREVAQGYEC 72
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 120
Score = 119 bits (300), Expect = 1e-31
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 467 EKKENLLGLAEIRQVILVN---KVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSL 523
+G A I V K +A C + +G + R K +++RN +IW G L SL
Sbjct: 4 GSSGYPIGEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSL 63
Query: 524 KRFKDNVKEVKAGFECERLSRIENQIQRDISE---IIAFDIQNPIINIITITEVKITLDY 580
K KD++ +K G +C ++ + + + +I ++ +V +
Sbjct: 64 KHHKDDISVIKTGMDCG--LSLDEE-KVEFKPGDQVICYEEN----------KVPTKTSW 110
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant
homology, BSGC structure funded by NIH, protein
structure initiative, PSI; NMR {Mycoplasma pneumoniae}
SCOP: d.52.7.1
Length = 116
Score = 118 bits (299), Expect = 1e-31
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNIL 600
+ R+EN I R I+ + +I N + +T VK++ D + ++ +N++ I ++
Sbjct: 5 KKERLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNRE-QIDRVV 63
Query: 601 DNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIK 648
++AK L+ L++ ++F D +I+NAM I +I+ +K
Sbjct: 64 GAFNQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNAMRIESIINSLK 111
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2
function project, S2F, structural genomics; 1.70A
{Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Length = 128
Score = 118 bits (297), Expect = 5e-31
Identities = 35/110 (31%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFN--KDISIKN 598
R R+ +IQ++I+ I+ ++++P I ++T+++V+++ D SYAKIF T +++I+
Sbjct: 7 RSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQ 66
Query: 599 ILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIK 648
+ L KA YIR L K + + +P + F YD S+ M +S L+ +
Sbjct: 67 GMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNLVTNVV 116
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 121 bits (306), Expect = 6e-29
Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 25/221 (11%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------GITQHIGAYNVVTNHGSITF 120
+ I GH+DHGKT+L + + + S + GIT IG + IT
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTE---IASTSAHDKLPESQKRGITIDIGFSAFKLENYRITL 77
Query: 121 LDTPGHEAFT-AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKID 179
+D PGH A+ + A + D+ ++VV A +G QT E + +P+IV I K D
Sbjct: 78 VDAPGHADLIRAVVS-AADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSD 136
Query: 180 KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPV 239
+ + ++ + S I ISAKTG G+++L I E+
Sbjct: 137 NAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNT 196
Query: 240 TTPAKGVI-----IESRLDKGKGPVATVLIQSGTLRCSDIV 275
+ K + I KG G V T I G ++ D +
Sbjct: 197 ESYFKMPLDHAFPI-----KGAGTVVTGTINKGIVKVGDEL 232
Score = 110 bits (276), Expect = 4e-25
Identities = 69/299 (23%), Positives = 112/299 (37%), Gaps = 57/299 (19%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRI 987
H+DHGKTTL L + + D ++RGITI + + RI
Sbjct: 25 FGHIDHGKTTLSKVL---TEIASTSA------HDKLPESQKRGITIDIGFSAFKLENYRI 75
Query: 988 NIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
++D PGHAD I ++V D L+++DA EGP QT I
Sbjct: 76 TLVDAPGHADL------IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 129
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
VV+ K D A E + + L +T + +I SA G+ +
Sbjct: 130 VVITKSDN--AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDE--------- 178
Query: 1102 PLFEAILKYV--PVHKDNSNNPLQLQI-----ISLEYSSYLGKIGIGRILSGRIKSLQDV 1154
L I+ + N+ + ++ + I G + G I G +K ++
Sbjct: 179 -LKNLIITTLNNAEIIRNTESYFKMPLDHAFPI-----KGAGTVVTGTINKGIVKVGDEL 232
Query: 1155 VIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIGSTICDP 1209
++ K+ I+ F + V EA +GD V I G+ ++I G +
Sbjct: 233 KVLPINM----STKVRSIQYF----KESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSK 283
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics,
NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1wdt_A*
Length = 665
Score = 120 bits (303), Expect = 9e-28
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYN 983
A++ H GKTTL + LL ++G + + D K T+ + + +
Sbjct: 13 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR 72
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
G R+ ++D PG+ DF GE+ L D L+ + A G T A +LG +VV
Sbjct: 73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVV 132
Query: 1044 VNKIDR 1049
V K+D+
Sbjct: 133 VTKLDK 138
Score = 66.0 bits (162), Expect = 6e-11
Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 51/224 (22%)
Query: 1102 PLFEAILKYVPVHKDNSNN-P---LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157
PL E IL+ +P + + P ++ ++G++ R+ GR+K +
Sbjct: 263 PLLELILEALPSPTERFGDGPPLAKVFKVQV---DPFMGQVAYLRLYRGRLKP--GDSLQ 317
Query: 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPM 1217
+ + + ++ + V G D + V EA +G ++ + E + G + KP +
Sbjct: 318 S----EAGQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEV 373
Query: 1218 LNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGL----------RVTQ 1267
P + + P K R D + L ++ +
Sbjct: 374 PFARLPDPNVPVAL--HP--------------KGRTDEA-RLGEALRKLLEEDPSLKLER 416
Query: 1268 NKHDDSIYE-----VSGRGELHLTILIENMRREGYELSVSRPRV 1306
+ E + G GELHL E ++ G E+ S P+V
Sbjct: 417 QE------ETGELLLWGHGELHLATAKERLQDYGVEVEFSVPKV 454
Score = 55.6 bits (135), Expect = 1e-07
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 22/127 (17%)
Query: 74 IMGHVDHGKTSL----LDY---IRKTNVVFSEAG-------------GITQHIGAYNVVT 113
++GH GKT+L L + V E G T G ++
Sbjct: 14 LVGHAGSGKTTLTEALLYKTGAKERRGRV--EEGTTTTDYTPEAKLHRTTVRTGVAPLLF 71
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
+ LD PG+ F + D ++ V+A+ GV T A A+ G+P +V
Sbjct: 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMV 131
Query: 174 AINKIDK 180
+ K+DK
Sbjct: 132 VVTKLDK 138
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural
genomics, PSI-biology, protein structure initiative; NMR
{Thermotoga maritima}
Length = 106
Score = 104 bits (262), Expect = 1e-26
Identities = 23/100 (23%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIIN--IITITEVKITLDYSYAKIFFTTFNKDISIKN 598
R + +E++IQ+ + E + +++P + +T + V+++ D YA ++ + K
Sbjct: 7 RKAMLESEIQKLLMEAL-QQLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERKE 65
Query: 599 ILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAM 638
++ L++AK + R ++K L ++ P + F+ D IE ++
Sbjct: 66 TVEILNRAKGFFRTFIAKNLRLYVAPEIRFYEDKGIEASV 105
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y*
3uoq_W*
Length = 529
Score = 114 bits (286), Expect = 3e-26
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 32/168 (19%)
Query: 926 AIIAHVDHGKTTLIDHLL------RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS 979
AII+H D GKTT+ + +L + +GT + + D E+EK+RGI+I +
Sbjct: 17 AIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQ 76
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
Y+ +N++DTPGH DF + R L+ VD L++IDA +G +TR KL +
Sbjct: 77 FPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR-------KL-ME 128
Query: 1040 -------PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
PI+ +NK+DR P +L D++ E +L
Sbjct: 129 VTRLRDTPILTFMNKLDRDIRDP-------MELLDEV---ENELKIGC 166
Score = 48.2 bits (115), Expect = 2e-05
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
+ LDTPGHE F+ R D ++V+ A GV +TR+ + ++ P++ +NK
Sbjct: 84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNK 143
Query: 178 IDK-----LDINLDRIKQDL 192
+D+ +++ LD ++ +L
Sbjct: 144 LDRDIRDPMEL-LDEVENEL 162
Score = 31.2 bits (71), Expect = 3.2
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 1142 RILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 1201
R++SG+ + + + K I+ F DR V EA GDI+ + I
Sbjct: 319 RVVSGKYEKGMKLRQVRT--AKD--VVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQ 374
Query: 1202 IGSTICDPSKPN--GLP 1216
IG T G+P
Sbjct: 375 IGDTFTQGEMMKFTGIP 391
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation;
HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 113 bits (285), Expect = 4e-26
Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 32/168 (19%)
Query: 926 AIIAHVDHGKTTLIDHLL------RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS 979
AII+H D GKTTL + LL + +GT + + D E+EK+RGI++ +
Sbjct: 17 AIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQ 76
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
Y IN++DTPGHADF + R L+ VD+ L++IDA +G P+T KL +
Sbjct: 77 FPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-------KL-ME 128
Query: 1040 -------PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
PI+ +NK+DR +L D++ E L
Sbjct: 129 VCRLRHTPIMTFINKMDRDTRPS-------IELLDEI---ESILRIHC 166
Score = 48.5 bits (116), Expect = 1e-05
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
I LDTPGH FT R D ++V+ A GV P+T + + ++ P++ INK
Sbjct: 84 INLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINK 143
Query: 178 IDK-----LDINLDRIKQDL 192
+D+ +++ LD I+ L
Sbjct: 144 MDRDTRPSIEL-LDEIESIL 162
Score = 31.2 bits (71), Expect = 2.7
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 1142 RILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 1201
RI SG+ + + K +IN F R EA GDI+ + I
Sbjct: 318 RIASGQYQKGMKAYHVRL--KKE--IQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQ 373
Query: 1202 IGSTICDPSKPN--GLP 1216
IG T + G+P
Sbjct: 374 IGDTFTQGERFKFTGIP 390
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Length = 129
Score = 100 bits (251), Expect = 6e-25
Identities = 14/111 (12%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIIN--IITITEVKITLDYSYAKIFFTTFNKDISIKN 598
RL + + + +++++ + + + +++V +T D+S + ++ T +
Sbjct: 14 RLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQNAH 73
Query: 599 ILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIKY 649
+ L ++ ++R L + + +P + F D + +L+
Sbjct: 74 MEAVLQRSAAHMRHLLMSQQTLRNVPPIVFVQDKGNAALAELDQLLAVADS 124
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 104 bits (262), Expect = 6e-24
Identities = 46/259 (17%), Positives = 85/259 (32%), Gaps = 59/259 (22%)
Query: 38 GHVAHASKLNDPESFLLNEYNKNITAESLVRA--PIVTI--MGHVDHGKTSLLDYIRKTN 93
H H S LV + + +G G+TSL + K
Sbjct: 5 HHHHHHSS-------------------GLVPRGSHMANVAIIGTEKSGRTSLAANLGK-- 43
Query: 94 VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT-AMRARGAKVTDIVVLVVAADDG 152
G + I YN ++ F+D + ++ ++DI VL + G
Sbjct: 44 ------KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLIT-ALNISDIAVLCIPPQ-G 95
Query: 153 VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYG---GASPF 208
+ T E I + G I+A+ + D ++ D + ++ G
Sbjct: 96 LDAHTGECIIALDLLGFKHGIIALTRSDSTHMHA----IDELKAKLKVITSGTVLQDWEC 151
Query: 209 ISISAKTGV-----GINKLLENISLQAEILELKAPVTTPAKGVI---IESRLD----KGK 256
IS++ G+++L I+ AE +++A I+ GK
Sbjct: 152 ISLNTNKSAKNPFEGVDELKARINEVAE--KIEAENAELNSLPARIFID---HAFNVTGK 206
Query: 257 GPVATVLIQSGTLRCSDIV 275
G V +++ G + D
Sbjct: 207 GCVVLGVVKQGISKDKDKT 225
Score = 97.3 bits (243), Expect = 2e-21
Identities = 46/303 (15%), Positives = 94/303 (31%), Gaps = 70/303 (23%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AII G+T+L ++G + + + G
Sbjct: 25 AIIGTEKSGRTSLA------------------------ANLGKKGTSSDITMYNNDKEGR 60
Query: 986 RINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
+ +D + + S++ D +L I +G T LGFK
Sbjct: 61 NMVFVDAHSYPKT------LKSLITALNISDIAVLCIPP-QGLDAHTGECIIALDLLGFK 113
Query: 1040 PIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQG 1098
++ + D + + L T Q D+ I + N +
Sbjct: 114 HGIIALTRSDS--THMHAIDELKAKLKVITSGTVLQ-DWECISLNTNKSAKNPFEGVDE- 169
Query: 1099 NMIPLFEAILKYVPV-HKDNSNNPLQLQI-----ISLEYSSYLGK--IGIGRILSGRIKS 1150
+ + + + + + ++ P ++ I ++ GK + +G + G K
Sbjct: 170 -LKARINEVAEKIEAENAELNSLPARIFIDHAFNVT-------GKGCVVLGVVKQGISKD 221
Query: 1151 LQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIGSTI 1206
I P D+ +I I+ V ++ A +G V + + ++I G I
Sbjct: 222 KDKTKIF--PLDR--DIEIRSIQSH----DVDIDSAPAGTRVGMRLKNVQAKDIERGFII 273
Query: 1207 CDP 1209
D
Sbjct: 274 SDK 276
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A
{Staphylococcus aureus}
Length = 693
Score = 107 bits (270), Expect = 8e-24
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 11/150 (7%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNI-----NARIMDSNEIEKERGITIFSKNCSIE 981
I+AH+D GKTT + +L +G + I A MD E E++RGITI S +
Sbjct: 15 IMAHIDAGKTTTTERILYYTG---RIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA 71
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
+ G R+NIIDTPGH DF EVER L ++D + ++DA G PQT V R+A G I
Sbjct: 72 WEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI 131
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071
V VNK+D+ A E+ V L D+L A
Sbjct: 132 VFVNKMDKLGANFEYSVS---TLHDRLQAN 158
Score = 46.7 bits (112), Expect = 6e-05
Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 45/192 (23%)
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193
Y+GK+ R+ SG + S V N K + ++ ++ R ++ SGDI
Sbjct: 321 YVGKLTFFRVYSGTMTSGSYV--KNSTKGK--RERVGRLLQMHANSRQEIDTVYSGDIAA 376
Query: 1194 ITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRL 1253
G+++ G T+C L + EP I+ V P K++
Sbjct: 377 AVGLKDTGTGDTLCGEKNDIILESMEFPEPV--IHLSV--EP--------------KSKA 418
Query: 1254 DHEIKNNIGL----------RVTQNKHDDSIYE-----VSGRGELHLTILIENMRRE-GY 1297
D + K L ++ E + G GELHL IL++ M++E
Sbjct: 419 DQD-KMTQALVKLQEEDPTFHAHTDE------ETGQVIIGGMGELHLDILVDRMKKEFNV 471
Query: 1298 ELSVSRPRVIFK 1309
E +V P V ++
Sbjct: 472 ECNVGAPMVSYR 483
Score = 43.3 bits (103), Expect = 6e-04
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT----REAIAHAKISGVPLIVAINK 177
DTPGH FT R +V D V V+ A GV PQT R+A + GVP IV +NK
Sbjct: 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY----GVPRIVFVNK 136
Query: 178 IDKL 181
+DKL
Sbjct: 137 MDKL 140
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 107 bits (270), Expect = 9e-24
Identities = 55/150 (36%), Positives = 81/150 (54%), Gaps = 11/150 (7%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNIN-----ARIMDSNEIEKERGITIFSKNCSIE 981
I AH+D GKTT + +L +G + I A MD E E+ERGITI + +
Sbjct: 17 IAAHIDAGKTTTTERILYYTG---RIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
+ RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071
NK+D++ A V+ + ++L A
Sbjct: 134 AFANKMDKTGADLWLVIR---TMQERLGAR 160
Score = 43.6 bits (104), Expect = 6e-04
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT----REAIAHAKISGVPLIVAINK 177
DTPGH FT R +V D ++V + GV PQ+ R+A + VP I NK
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY----KVPRIAFANK 138
Query: 178 IDKL 181
+DK
Sbjct: 139 MDKT 142
Score = 37.9 bits (89), Expect = 0.033
Identities = 13/34 (38%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 1277 VSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 1309
+SG GELHL I+++ ++RE + +V +P+V ++
Sbjct: 451 ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484
Score = 35.2 bits (82), Expect = 0.19
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193
Y+G++ R+ SG + S V N + K ++ ++ R V E +GD+
Sbjct: 321 YVGRLTFIRVYSGTLTSGSYV--YNTTKGR--KERVARLLRMHANHREEVEELKAGDLGA 376
Query: 1194 ITGIEEICIGSTICDPSKP 1212
+ G++E G T+ P
Sbjct: 377 VVGLKETITGDTLVGEDAP 395
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S
subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 106 bits (267), Expect = 2e-23
Identities = 62/157 (39%), Positives = 81/157 (51%), Gaps = 18/157 (11%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNIN-----ARIMDSNEIEKERGITIFS------ 975
I AH+D GKTT + +L +G N I A MD E E+ERGITI S
Sbjct: 15 ISAHIDAGKTTTTERILFYTG---VNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF 71
Query: 976 -KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKAL 1034
+ +Y RINIIDTPGH DF EVER + ++D +++ AV G PQ+ V R+A
Sbjct: 72 WSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN 131
Query: 1035 KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071
K I VNK+DR A VV+ + +L A
Sbjct: 132 KYKVPRIAFVNKMDRMGANFLKVVN---QIKTRLGAN 165
Score = 46.0 bits (110), Expect = 1e-04
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 45/192 (23%)
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193
++G + R+ SG + S V +N + + +I R + E +GDI
Sbjct: 329 FVGNLTFFRVYSGVVNSGDTV--LNSVKAA--RERFGRIVQMHANKREEIKEVRAGDIAA 384
Query: 1194 ITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRL 1253
G++++ G T+CDP P L + EP I+ V P K +
Sbjct: 385 AIGLKDVTTGDTLCDPDAPIILERMEFPEPV--ISIAV--EP--------------KTKA 426
Query: 1254 DHEIKNNIGL----------RVTQNKHDDSIYE-----VSGRGELHLTILIENMRRE-GY 1297
D E K + L RV ++ E ++G GELHL I+++ M+RE
Sbjct: 427 DQE-KMGLALGRLAKEDPSFRVWTDE------ESNQTIIAGMGELHLDIIVDRMKREFNV 479
Query: 1298 ELSVSRPRVIFK 1309
E +V +P+V ++
Sbjct: 480 EANVGKPQVAYR 491
Score = 43.7 bits (104), Expect = 6e-04
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT----REAIAHAKISGVPLIVAINK 177
DTPGH FT R +V D V+V A GV PQ+ R+A + VP I +NK
Sbjct: 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY----KVPRIAFVNK 143
Query: 178 IDKL 181
+D++
Sbjct: 144 MDRM 147
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain;
1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Length = 95
Score = 90.0 bits (224), Expect = 1e-21
Identities = 20/93 (21%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNIL 600
+ +E Q++R ++E I +++P + ++T+ V+++ D S ++ F ++ + L
Sbjct: 4 GKAHLEAQLKRALAEEIQ-ALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFREE---EGAL 59
Query: 601 DNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNS 633
LS+A+ + L++++ + LP L F +
Sbjct: 60 RALSRAERRLVAALARRVRMRRLPRLEFLPWRA 92
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 98.2 bits (245), Expect = 2e-21
Identities = 72/323 (22%), Positives = 117/323 (36%), Gaps = 47/323 (14%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSG-----TFRKNQNINAR----------IMDSNEIEKERG 970
I HVD GK+TL ++L +G T K + +DS E+E+G
Sbjct: 47 VFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG 106
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PM 1023
T+ E R +++D PGH + + S D +L+I A G
Sbjct: 107 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG 166
Query: 1024 PQTRFVTRKALKLGFK-PIVVVNKIDR-----SNARPEWVVDATFDLFDKLCATEEQLDF 1077
QTR A G +VV+NK+D S R + VD ++ + D
Sbjct: 167 GQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDV 226
Query: 1078 PVIYTSALHGYANENSKARQGNM-----IPLFEAILKYVPVHKDNSNNPLQLQIISLEYS 1132
+ SA G N + L E + + + N P + I S Y
Sbjct: 227 KYMPVSAYTG-QNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERK-VNAPFIMPIASK-YK 283
Query: 1133 SYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV 1192
LG I G+I +G IK +V++M P + ++ ++ ++ GD V
Sbjct: 284 D-LGTILEGKIEAGSIKKNSNVLVM------PINQTL-EVTAIYDEADEEISSSICGDQV 335
Query: 1193 LIT---GIEEICIGSTICDPSKP 1212
+ ++ G + P
Sbjct: 336 RLRVRGDDSDVQTGYVLTSTKNP 358
Score = 69.3 bits (170), Expect = 4e-12
Identities = 61/291 (20%), Positives = 106/291 (36%), Gaps = 71/291 (24%)
Query: 74 IMGHVDHGKTSL---LDY---------IRKTNVVFSEAG-------------------GI 102
+GHVD GK++L + + + K EAG G
Sbjct: 48 FIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGK 107
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM-------P 155
T +G T H + LD PGH+ + GA DI VLV++A G
Sbjct: 108 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 167
Query: 156 QTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP--EEYGG-----ASP 207
QTRE A+ G+ L+V INK+D+ + + +++ G
Sbjct: 168 QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVK 227
Query: 208 FISISAKTGVGINK--------------LLENI-SLQAEILELKAPVTTPAKGVIIESRL 252
++ +SA TG + LLE + S+ ++ AP P
Sbjct: 228 YMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKY----- 282
Query: 253 DKGKGPVATVLIQSGTLRCSDIVV---AGASYGRIRSMLNENGKNILEAGP 300
K G + I++G+++ + V+ + + ++ +E + I +
Sbjct: 283 -KDLGTILEGKIEAGSIKKNSNVLVMPINQT-LEVTAIYDEADEEISSSIC 331
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 98.1 bits (245), Expect = 2e-21
Identities = 83/334 (24%), Positives = 131/334 (39%), Gaps = 71/334 (21%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSG-----TFRKNQN----------INARIMDSNEIEKERG 970
+I HVDHGK+TL+ LL G T ++ + A ++D + E+ERG
Sbjct: 10 IVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG 69
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEG--- 1021
+TI E IID PGH DF + +M+ D +L++ A +G
Sbjct: 70 VTINLTFMRFETKKYFFTIIDAPGHRDF------VKNMITGASQADAAILVVSAKKGEYE 123
Query: 1022 ----PMPQTRFVTRKALKLGFK-PIVVVNKIDR-----SNARPEWVVDATFDLFDKLCAT 1071
QTR A +G IV VNK+D R + +VD
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN 183
Query: 1072 EEQLDF-PVIYTSALHGYANENSKARQGNMIP------LFEAILKYVPVHKDNSNNPLQL 1124
++ F PV A G +N + NM L E + + K + PL++
Sbjct: 184 TNKVRFVPV---VAPSG---DNITHKSENM-KWYNGPTLEEYLDQLELPPKP-VDKPLRI 235
Query: 1125 QIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRVFKGLDRVL 1182
I + S +G + +GR+ SG +K +V M P ++ I
Sbjct: 236 PIQDVYSISGVGTVPVGRVESGVLKVGDKIVFM------PAGKVGEVRSIE----THHTK 285
Query: 1183 VNEALSGDIVLIT--GIE--EICIGSTICDPSKP 1212
+++A GD + G+E +I G + P+ P
Sbjct: 286 MDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 319
Score = 65.0 bits (159), Expect = 9e-11
Identities = 67/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 72 VTIMGHVDHGKTSL---LDY---------IRKTNVVFSEAG------------------- 100
+ ++GHVDHGK++L L +++ + G
Sbjct: 9 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 68
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------V 153
G+T ++ T T +D PGH F GA D +LVV+A G V
Sbjct: 69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSV 128
Query: 154 MPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP--EEYG---GASP 207
QTRE I AK G+ LIVA+NK+D + D + I +QV YG
Sbjct: 129 EGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVR 188
Query: 208 FISISAKTGVGINKLLENIS-------LQA--EILELKAPVTTPAKGVIIESRLDKGKGP 258
F+ + A +G I EN+ + ++ PV P + I + G G
Sbjct: 189 FVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGT 248
Query: 259 VATVLIQSGTLRCSDIVV 276
V ++SG L+ D +V
Sbjct: 249 VPVGRVESGVLKVGDKIV 266
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta
barrel, switch domain, heterodimer, pyrophosphate, G
protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 93.9 bits (234), Expect = 4e-20
Identities = 76/328 (23%), Positives = 132/328 (40%), Gaps = 60/328 (18%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ----------------NIN-ARIMDSNE 964
+++ +VD GK+TLI LL S ++ +++ A ++D +
Sbjct: 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQ 83
Query: 965 IEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP 1024
E+E+GITI + I DTPGH + + S D ++L+DA G
Sbjct: 84 AEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT 143
Query: 1025 QTR---FVTRKALKLGFKPIVV-VNKIDR---SNARPEWVVDATFDLFDKLCATEEQLDF 1077
QTR ++ +L LG K IVV +NK+D E + + + + F
Sbjct: 144 QTRRHSYIA--SL-LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAF 200
Query: 1078 -PVIYTSALHGYANENSKARQGNM-----IPLFEAILKYVPVHKDNSNNPLQLQI----- 1126
P+ SAL G +N + L E IL+ V + D + L+ +
Sbjct: 201 VPM---SALKG---DNVVNKSERSPWYAGQSLME-ILETVEIASDRNYTDLRFPVQYVNR 253
Query: 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEA 1186
+L + + G + SG + ++V++ P K +++ I F+G + +A
Sbjct: 254 PNLNFRGFA-----GTLASGIVHKGDEIVVL--PSGK--SSRVKSIVTFEG----ELEQA 300
Query: 1187 LSGDIVLITGIEEICI--GSTICDPSKP 1212
G V +T +EI I G +
Sbjct: 301 GPGQAVTLTMEDEIDISRGDLLVHADNV 328
Score = 71.9 bits (177), Expect = 6e-13
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 46/179 (25%)
Query: 41 AHASKLNDPESFLLNEYNKNITAESLVRAPIVTIMGHVDHGKTSL--------------- 85
+H S L + + Y + ++R +T G+VD GK++L
Sbjct: 2 SHQSDLISED---ILAYLGQHERKEMLR--FLTC-GNVDDGKSTLIGRLLHDSKMIYEDH 55
Query: 86 LDYIRKTNVVFSEAG------------------GITQHIGAYNVVTNHGSITFLDTPGHE 127
L+ I + + G GIT + T DTPGHE
Sbjct: 56 LEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHE 115
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS---GVP-LIVAINKIDKLD 182
+T A GA D+ +++V A GV QTR H+ I+ G+ ++VAINK+D
Sbjct: 116 QYTRNMATGASTCDLAIILVDARYGVQTQTRR---HSYIASLLGIKHIVVAINKMDLNG 171
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 93.5 bits (233), Expect = 5e-20
Identities = 70/247 (28%), Positives = 100/247 (40%), Gaps = 52/247 (21%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVV-FSE--AGGITQHIG----------------AYNV 111
I + GHVDHGKT+L + SE GIT IG V
Sbjct: 13 IGMV-GHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 71
Query: 112 VTNHGS-------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAH 163
G ++F+D PGHEA GA + D +LV+AA++ PQTRE +
Sbjct: 72 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 131
Query: 164 AKISGVP-LIVAINKIDKLDINLDRIKQDLISEQV------IPEEYGGASPFISISAKTG 216
+I G +I+A NKI+ +D K+ + E I +P I ISA G
Sbjct: 132 LQIIGQKNIIIAQNKIELVD------KEKAL-ENYRQIKEFIEGTVAENAPIIPISALHG 184
Query: 217 VGINKLLENISLQAEILELKAPVTTPAKGVIIES--------RLDKGKGPVATVLIQSGT 268
I+ L++ I + I K P K +++ S +K G V I G
Sbjct: 185 ANIDVLVKAI--EDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGK 242
Query: 269 LRCSDIV 275
L+ D +
Sbjct: 243 LKVGDEI 249
Score = 78.8 bits (195), Expect = 3e-15
Identities = 81/353 (22%), Positives = 126/353 (35%), Gaps = 113/353 (32%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI-------------- 973
+ HVDHGKTTL L +G S E RGITI
Sbjct: 16 VGHVDHGKTTLTKAL---TGV----WTDTH----SE--ELRRGITIKIGFADAEIRRCPN 62
Query: 974 --------FSKNCSIEYNGTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDA 1018
C E R ++ ID PGH + +M+ D +L+I A
Sbjct: 63 CGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEAL------MTTMLAGASLMDGAILVIAA 116
Query: 1019 VEG-PMPQTRFVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQL- 1075
E P PQTR +G K I++ NKI+ +VD +K Q+
Sbjct: 117 NEPCPRPQTREHLMALQIIGQKNIIIAQNKIE--------LVDK-----EKALENYRQIK 163
Query: 1076 ---------DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI 1126
+ P+I SALHG N+ L +AI ++P K + N P ++ +
Sbjct: 164 EFIEGTVAENAPIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKMLV 213
Query: 1127 ISL--------EYSSYLGKIGIGRILSGRIKSLQDVVI--------MNGPDDKPNKAKIN 1170
+ +G + G I+ G++K ++ I +P +I
Sbjct: 214 LRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIV 273
Query: 1171 QIRVFKGLDRVLVNEALSGDIV-LITGI------EEICIGSTICDPSKPNGLP 1216
++ V EA G +V + T + ++ G+ + KP LP
Sbjct: 274 SLQAG----GQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG---KPGKLP 319
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 92.7 bits (231), Expect = 8e-20
Identities = 64/247 (25%), Positives = 94/247 (38%), Gaps = 52/247 (21%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVV-FSE--AGGITQHIG----------------AYNV 111
I + GHVDHGKTSL + SE GI+ +G
Sbjct: 11 IGMV-GHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPR 69
Query: 112 VTNHGSIT-------FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAH 163
N + T F+D+PGHE A GA + D +LV+AA++ PQT+E +
Sbjct: 70 CPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA 129
Query: 164 AKISGVP-LIVAINKIDKLDINLDRIKQDLISEQV------IPEEYGGASPFISISAKTG 216
+I G+ +I+ NKID +D ++ E + +P I ISA
Sbjct: 130 LEILGIDKIIIVQNKIDLVD------EKQAE-ENYEQIKEFVKGTIAENAPIIPISAHHE 182
Query: 217 VGINKLLENISLQAEILELKAPVTTPAKGVIIES--------RLDKGKGPVATVLIQSGT 268
I+ LL+ I Q I K + + S + KG V I G
Sbjct: 183 ANIDVLLKAI--QDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGV 240
Query: 269 LRCSDIV 275
+ D +
Sbjct: 241 FKVGDEI 247
Score = 82.3 bits (204), Expect = 2e-16
Identities = 76/353 (21%), Positives = 119/353 (33%), Gaps = 113/353 (32%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI-------------- 973
+ HVDHGKT+L L +G S E RGI+I
Sbjct: 14 VGHVDHGKTSLTKAL---TGV----WTDRH----SE--ELRRGISIRLGYADCEIRKCPQ 60
Query: 974 --------FSKNCSIEYNGTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDA 1018
NC E R ++ +D+PGH + +M+ D +L+I A
Sbjct: 61 CGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETL------MATMLSGASLMDGAILVIAA 114
Query: 1019 VEG-PMPQTRFVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQL- 1075
E P PQT+ LG I++V NKID +VD + EQ+
Sbjct: 115 NEPCPQPQTKEHLMALEILGIDKIIIVQNKID--------LVDE-----KQAEENYEQIK 161
Query: 1076 ---------DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI 1126
+ P+I SA H N+ L +AI ++P K + + ++ +
Sbjct: 162 EFVKGTIAENAPIIPISAHHEA----------NIDVLLKAIQDFIPTPKRDPDATPRMYV 211
Query: 1127 ISL--------EYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDK--------PNKAKIN 1170
E G + G I+ G K ++ I G P KI
Sbjct: 212 ARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIV 271
Query: 1171 QIRVFKGLDRVLVNEALSGDIV-----LITGI--EEICIGSTICDPSKPNGLP 1216
+ ++ +A G ++ L + + GS + P LP
Sbjct: 272 SLAAG----NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVG---LPGTLP 317
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 92.1 bits (229), Expect = 4e-19
Identities = 71/336 (21%), Positives = 130/336 (38%), Gaps = 74/336 (22%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSG-----TFRKN----QNIN------ARIMDSNEIEKERG 970
+ HVD GK+T++ ++ + G + +K N A ++D+ E E+ RG
Sbjct: 181 VVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARG 240
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPM- 1023
+T+ + + E + I D PGH DF I M+ D +L++D+ +
Sbjct: 241 VTMDVASTTFESDKKIYEIGDAPGHRDF------ISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 1024 ------PQTRFVTRKALKLGFK-PIVVVNKIDR---SNARPEWVVDATFDLFDKLCA-TE 1072
QTR LG +V VNK+D S R + + + D K+
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKT 354
Query: 1073 EQLDF-PVIYTSALHGYANENSKARQGNMI-------PLFEAILKYVPVHKDNSNNPLQL 1124
+ F P+ SA+ G N + + + L A+ + VP K PL+L
Sbjct: 355 SNVHFVPI---SAISG---TNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKP-YRKPLRL 407
Query: 1125 QIISLEYSSYLGKIGI--GRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRVFKGLDR 1180
I + Y S + GR+ +G ++ Q + + ++ A + +
Sbjct: 408 SIDDV-YRS--PRSVTVTGRVEAGNVQVNQVLYDV------SSQEDAYVKNVIRN---SD 455
Query: 1181 VLVNEALSGDIVLIT----GIEEICIGSTICDPSKP 1212
A++GD V + + ++ G + + P
Sbjct: 456 PSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENP 491
Score = 59.4 bits (144), Expect = 7e-09
Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 57/202 (28%)
Query: 74 IMGHVDHGKTSL---LDY---------IRKTNVVFSEAG-------------------GI 102
+ GHVD GK+++ + + ++K + + +G G+
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGV 241
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAF-----TAMRARGAKVTDIVVLVVAADDGVM--- 154
T + + ++ D PGH F GA D VLVV +
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIA-----GASSADFAVLVVDSSQNNFERG 296
Query: 155 ----PQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGAS--- 206
QTRE + G+ ++V++NK+D + + DR ++ I V
Sbjct: 297 FLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQE--IKNIVSDFLIKMVGFKT 354
Query: 207 ---PFISISAKTGVGINKLLEN 225
F+ ISA +G + + +
Sbjct: 355 SNVHFVPISAISGTNLIQKDSS 376
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 92.1 bits (229), Expect = 5e-19
Identities = 65/342 (19%), Positives = 115/342 (33%), Gaps = 73/342 (21%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSG-----TFRKN----QNIN------ARIMDSNEIEKERG 970
++ HVD GK+TL+ LL RK + + A IMD E+ERG
Sbjct: 171 VVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERG 230
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPM- 1023
+T+ + I+D PGH DF + + + D +L +D
Sbjct: 231 VTVSICTSHFSTHRANFTIVDAPGHRDF------VPNAIMGISQADMAILCVDCSTNAFE 284
Query: 1024 ------PQTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLFDKLCATEE 1073
QT+ A LG I+ +NK+D S R E + + E+
Sbjct: 285 SGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFED 344
Query: 1074 QLDF-PVIYTSALHGYANENSKARQGNMIP------LFEAI-----LKYVPVHKDNSNNP 1121
+++ P+ S G + L + N ++P
Sbjct: 345 NINWVPI---SGFSG-EGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 400
Query: 1122 LQLQIISLEYSSYLGKIG---IGRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRVFK 1176
++ + S G++ SG I+ + + I P++ +++I+V
Sbjct: 401 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIY------PSEQSCIVDKIQVGS 454
Query: 1177 GLDRVL----VNEALSGDIVLIT----GIEEICIGSTICDPS 1210
+ + A+ GD V + E+I G
Sbjct: 455 QQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVD 496
Score = 60.5 bits (147), Expect = 3e-09
Identities = 55/273 (20%), Positives = 99/273 (36%), Gaps = 77/273 (28%)
Query: 74 IMGHVDHGKTSL---LDY---------IRKTNVVFSEAG-------------------GI 102
++GHVD GK++L L Y +RK G G+
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 231
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAF-----TAMRARGAKVTDIVVLVVAADDGVM--- 154
T I + T+ + T +D PGH F G D+ +L V
Sbjct: 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIM-----GISQADMAILCVDCSTNAFESG 286
Query: 155 ----PQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP--EEYG---G 204
QT+E + A G+ LI+A+NK+D +D + R ++ I +++P + G
Sbjct: 287 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE--IKSKLLPYLVDIGFFED 344
Query: 205 ASPFISISAKTGVGINKL------------------LENISLQAEILELKAPVTTPAKGV 246
++ IS +G G+ K+ LEN + + P
Sbjct: 345 NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFS 404
Query: 247 IIESRLDKGKGPVATVL---IQSGTLRCSDIVV 276
++E K ++ ++SG+++ + +
Sbjct: 405 VLEIIPSKKTSNDLALVSGKLESGSIQPGESLT 437
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 93.0 bits (230), Expect = 6e-19
Identities = 101/635 (15%), Positives = 196/635 (30%), Gaps = 190/635 (29%)
Query: 280 SYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKARE-----IGLF 334
Y I S+ + + + ++Q + K S EE+ I+ K A
Sbjct: 17 QYKDILSVFEDAFVDNFDCK-----DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 335 RQG------KFRDVKLSK------QKLHKT---------------ENMFNDINKEKVKNL 367
KF + L + + ++ND
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ------- 124
Query: 368 LIIIKTDVYGSRE----VLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIG 423
+ K +V SR L ++L L K + +I +G+ S +
Sbjct: 125 -VFAKYNV--SRLQPYLKLRQALLELRPAK-NV-LIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 424 F-------NVRADASTRK-LAQINNINIR-----------YHNIIYNIIKEIKSEITNLI 464
N++ S L + + + NI I I++E+ L+
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELRRLL 238
Query: 465 PLEKKEN-LLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSL 523
+ EN LL L ++ N + C IL L R ++ T L +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFN--LSCKIL--LTTRFKQV----------TDFLSAA 284
Query: 524 KRFKDNVKEVKAGF---ECERL-SRIENQIQRDISEIIAFDIQNP-IINII--TITEVKI 576
++ E + L + + +D+ NP ++II +I +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTT-NPRRLSIIAESIRDGLA 342
Query: 577 TLDYSYAKIFFTTFNKDISIKNILDNLSKA---KNYIRFK-LSKKLHI--HTLPILNFFY 630
T D + + I++ L+ L A K + R HI L ++ +F
Sbjct: 343 TWDN-WKHVNCDKLTT--IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFD 398
Query: 631 DNSIENAMMISKLIDGIKYCMQFHIKKNKN----IIHGVLL----------------LDK 670
+ ++++KL KY + ++K I + L +D
Sbjct: 399 VIKSDVMVVVNKL---HKYSL---VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 671 ---PYGLSSNNA----------------LKKI----------KYLLN----AKKVGYTGT 697
P S++ LK I L+ +K+ + T
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 698 LDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSI 757
+ +L + + Y+ + D YE ++ I+DF +P I
Sbjct: 513 AWNASGSILNT-LQQLKFYKPYICDNDPKYERLV------------NAILDF---LPK-I 555
Query: 758 EIIEKILINFHGKISQIPPMYSALKYKGIPLYKYA 792
E E ++ + + + +I AL + +++ A
Sbjct: 556 E--ENLICSKYTDLLRI-----ALMAEDEAIFEEA 583
Score = 78.7 bits (193), Expect = 1e-14
Identities = 110/726 (15%), Positives = 212/726 (29%), Gaps = 200/726 (27%)
Query: 336 QGKFRDVKLSKQKLHKTENMFNDI--------NKEKVKNLLIIIKTDVYGSREVLTESLK 387
Q +++D+ + D+ +KE++ ++++ K V G+ L +L
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-KDAVSGTL-RLFWTLL 72
Query: 388 NLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHN 447
+ + V+ V + + + S ++ + R+ + + + I +
Sbjct: 73 SKQEEMVQ-----KFVEEVLRINYKF-LMSP-------IKTE--QRQPSMMTRMYIEQRD 117
Query: 448 IIYNIIKEI-KSEITNLIPLEK-KENLLGLAEIRQVILVNKVSKIAGC--YILEGLIRRD 503
+YN + K ++ L P K ++ LL L + V++ G + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSGKTWVALDVCLS 173
Query: 504 SKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIENQIQRDISEIIAFDIQN 563
K++ + I W + C + +Q+ + +I
Sbjct: 174 YKVQCKMDFKIFW----------------LNLK-NCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 564 PIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHIHTL 623
D+S NI + + +R L K + + L
Sbjct: 217 S--------------DHSS---------------NIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 624 PILNFFYDNSIENAMMIS----------KLIDGIKYCMQFHIKKNKNIIHGVLLLDKPYG 673
+L + NA +S ++ D + HI L
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS----------LDHHSMT 297
Query: 674 LSSNNALKKIKYLLNAKKVGY-TGTLDPFATGLLPLC---FGEATK-----FSNYLSEAD 724
L+ + LL K + L P E+ + + N+
Sbjct: 298 LTPDEVKS----LL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 725 KYYEAIIHLGITT-ETGDIEGKIIDFNKNI-PNSIEIIEKILINFHGKISQIPPMYSALK 782
II + E + ++ P S I +L + + M K
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 783 YKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKM 842
L+KY S + + K I I I YL L++ +
Sbjct: 411 -----LHKY--SLVEKQPKESTISIPSI--------YLELKVKLENEYAL---------- 445
Query: 843 LGCGAHLKYLRRIGIDKLTLDKCLNIDTIIK-----YSEYERIS---SLIPIDILLSSFG 894
H R I +D + K + D +I Y Y I I ++ F
Sbjct: 446 -----H----RSI-VDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPERMTLFR 494
Query: 895 IIYLSDLLSKRFLHGQNLFLSDENIYILIKSAIIAHVDHGKT--TLIDHLLRQSGTFRKN 952
+++L D RFL + I+ A G TL L N
Sbjct: 495 MVFL-DF---RFLEQK------------IRHDSTAWNASGSILNTLQQ-LKFYKPYICDN 537
Query: 953 QNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNV 1012
R++ N I F N+I + + D + L M ++
Sbjct: 538 DPKYERLV--NAILD------FLPKIE-------ENLICSK-YTDL---LRIAL-MAEDE 577
Query: 1013 LLLIDA 1018
+ +A
Sbjct: 578 AIFEEA 583
Score = 67.2 bits (163), Expect = 4e-11
Identities = 104/689 (15%), Positives = 205/689 (29%), Gaps = 194/689 (28%)
Query: 578 LDYSYAKI---FFTTFNKDISIKNILDNLSKAKNYIRFKLSKKL--HIHTLPILNFFYDN 632
Y Y I F F + K++ D + LSK+ HI +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQD-------MPKSILSKEEIDHIIMSK-------D 59
Query: 633 SIENAMMISKLIDGIKYCMQFHIKKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKV 692
++ + +L LL K ++ K++ ++
Sbjct: 60 AVSGTL---RLFW--------------------TLLSKQ-----EEMVQ--KFVEEVLRI 89
Query: 693 GYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKN 752
Y + P T + Y+ + D+ Y D + +N +
Sbjct: 90 NYKFLMSPIKT----EQRQPSMMTRMYIEQRDRLY------------NDNQ-VFAKYNVS 132
Query: 753 IPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITI--KRKLRYIKIYKI 810
+ + L ++ P K + + SG T K+
Sbjct: 133 RLQPYLKLRQAL-------LELRPA------KNVLIDGVLGSGKTWVALDVCLSYKV--Q 177
Query: 811 TIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDT 870
+D+ I +L L+ +C+ E + +ML L ID
Sbjct: 178 CKMDFKIFWLNLK-NCNS-------PETVLEML----------------QKL--LYQIDP 211
Query: 871 IIKYSEYERISSLIPIDILLSSFGIIYLSDLLSKRFLHGQNLFLSDENIYILIKSAIIAH 930
++ SS I + I L LL + + L + N+ +
Sbjct: 212 --NWTSRSDHSSNIKLRI---HSIQAELRRLLKSK-PYENCLLVLL-NVQ---NAKAWNA 261
Query: 931 VDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI----EKERGITIFSK--NCSIE--- 981
+ L+ R + + + ++ K +C +
Sbjct: 262 FNLSCKILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 982 -----YNGTRINII-----DTPGHADFGGEV--ERILSMVDNVLLLIDAVEGPMPQTRF- 1028
N R++II D D V +++ +++++ L +++ E + F
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE---YRKMFD 376
Query: 1029 ----------VTRKALKL------GFKPIVVVNKIDRSNARPEWVVDATF---DLFDKLC 1069
+ L L +VVVNK+ + + + ++T ++ +L
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 1070 ATEEQLDFPVIYTSALH-----GYANENSKARQGNMIPLFEA--ILKYVPVHKDNSNNPL 1122
E ALH Y N ++IP + ++ H N +P
Sbjct: 437 VKLENE-------YALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 1123 QLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKG--LDR 1180
++ + + + + R L +I+ D N N + Q++ +K D
Sbjct: 489 RMTLFRMVFLDF-------RFLEQKIR--HDSTAWNASGSILN--TLQQLKFYKPYICDN 537
Query: 1181 VLVNEALSGDIV-LITGIEEICIGSTICD 1208
E L I+ + IEE I S D
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTD 566
Score = 61.8 bits (149), Expect = 2e-09
Identities = 109/759 (14%), Positives = 212/759 (27%), Gaps = 266/759 (35%)
Query: 720 LSEADKYYEAIIHLGITTETGDIEGK-IIDFNKNIPNSIEIIEKILINFHGKISQIPPMY 778
E Y+ I+ + + + K + D K+I + EI + I+++ +S ++
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKD-AVSGTLRLF 68
Query: 779 SALKYKGIPLYK----------Y------------ARSGITIKRKLRYI----KIYKIT- 811
L K + + Y S +T YI ++Y
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR----MYIEQRDRLYNDNQ 124
Query: 812 -IIDYTI----PYLTLRIHCSK---GTYIRVLSEDIGKMLGCGAHLKYLRRIGIDK--LT 861
Y + PYL LR + + + G +LG G K +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLID----G-VLGSG------------KTWVA 167
Query: 862 LDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDLLSKRFLHGQNLFLSDENIYI 921
LD CL+ K F I +L+ L S E + +
Sbjct: 168 LDVCLSYKVQCKMD-----------------FKIFWLN--LKNCN--------SPETV-L 199
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
+ ++ +D T+ DH NI RI + I+ E + SK
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHS----------SNIKLRI---HSIQAELRRLLKSK----P 242
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
Y N LL++ V+ + A L K I
Sbjct: 243 YE---------------------------NCLLVLLNVQNA----KAW--NAFNLSCK-I 268
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
++ + + D T LD + K+
Sbjct: 269 LLTTR-FKQVT----------DFLSAATTTHISLDHH------SMTLTPDEVKS------ 305
Query: 1102 PLFEAILKYVPVHKDN------SNNPLQLQIIS---------LEYSSYLGKIGIGRILSG 1146
L LKY+ + + NP +L II+ + ++ + I+
Sbjct: 306 -LL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 1147 RIKSL---------QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGI 1197
+ L + + P A I + ++ + + D++++ +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVF--PPS----AHI-PTILLS----LIWFDVIKSDVMVV--V 408
Query: 1198 EEICIGSTI-CDPSKPN-GLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDH 1255
++ S + P + +P + ++ V + I D
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLE-------LKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 1256 EIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGEL 1315
+ + D Y H+ G+ L + E
Sbjct: 462 D-------DLIPPYLDQYFYS-------HI----------GHHLK--------NIEHPER 489
Query: 1316 YEPYENLFVDIEEINQGIIMQKLNYRG--------GDLKN----IEINEKERVRLEYRIP 1363
+ +F+D + Q I + LK I N+ + RL
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV---- 545
Query: 1364 SRGLIGF---QNEFITLTRGTGLI-SHVFEEYAPFYNKS 1398
++ F E + ++ T L+ + E + ++
Sbjct: 546 -NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 61.0 bits (147), Expect = 3e-09
Identities = 104/672 (15%), Positives = 207/672 (30%), Gaps = 183/672 (27%)
Query: 900 DLLSKRFLHGQNLFLSD---ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN 956
D+LS ++ F+ + +++ + KS + IDH++ + +
Sbjct: 20 DILS----VFEDAFVDNFDCKDVQDMPKSIL-------SKEEIDHIIMSKD--AVSGTL- 65
Query: 957 ARIMDSNEIEKERGITIFSKNC-SIEYN--GTRI---NIIDTPGHADFGGEVERILSMVD 1010
R+ + ++E + F + I Y + I + + + +R+ + D
Sbjct: 66 -RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--D 122
Query: 1011 NVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVN------KIDRSNARPEWVVDATFD 1063
N + V Q R+AL +L V+++ K WV
Sbjct: 123 NQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--------TWVALDV-- 170
Query: 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK-----YVPVHKDNS 1118
+ ++DF + + + N NS E +L+ + + +
Sbjct: 171 CLSY--KVQCKMDFKIFWLN----LKNCNSP----------ETVLEMLQKLLYQIDPNWT 214
Query: 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRI--KSLQDVVIMNGPDDKPNKAKINQIRVFK 1176
+ I L S + + R+L + L +++ + + + +
Sbjct: 215 SRSDHSSNIKLRIHS--IQAELRRLLKSKPYENCL---LVL---LN------VQNAKAWN 260
Query: 1177 GLD---RVL-------VNEALSGDIVLITGIEEICIGSTICDPSKPNGLPM----LNIDE 1222
+ ++L V + LS ++ + T + L+
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-----PDEVKSLLLKYLDCRP 315
Query: 1223 PTLTINFMVNNSPLA-GREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRG 1281
L ++ +P + I R D+ V +K I E S
Sbjct: 316 QDLPRE-VLTTNPRRLSIIAESI--RDGLATWDNW------KHVNCDKLTTII-ESS--- 362
Query: 1282 ELHLTILIENMRREGYE-LSVSRPRV-I-FKTLNGELYEPYENLFVDIEEINQGIIMQKL 1338
L +L R+ ++ LSV P I L ++ D+ + + +++ KL
Sbjct: 363 ---LNVLEPAEYRKMFDRLSVFPPSAHIPTILL--------SLIWFDVIKSDVMVVVNKL 411
Query: 1339 NYRG---GDLKN--IEI------------NEKE---RVRLEYRIPSRGLIGFQNEFITLT 1378
+ K I I NE + Y IP F ++ +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK----TFDSDDLIPP 467
Query: 1379 RGTGLI-SHV---------FEEYAPFYNKSKY-DLGKRRNGVLISQYSGKAVAYSLWKLQ 1427
SH+ E F + + D + + A L LQ
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLF--RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 1428 D--RGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLISPIKI 1485
+ +I ND YE ++ I D L E+ L I S +D ++ I
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAI----LDFLPKI--EENL--ICSKYTD-LLR------I 570
Query: 1486 TLEYAIEFINDD 1497
L E I ++
Sbjct: 571 ALMAEDEAIFEE 582
Score = 45.6 bits (107), Expect = 1e-04
Identities = 43/292 (14%), Positives = 85/292 (29%), Gaps = 75/292 (25%)
Query: 1251 NRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL----IENMRREGYELSVSRPRV 1306
++ K+ + + + +V ++ +IL I+++ VS
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEIDHIIMSKDA--VSGTLR 66
Query: 1307 IFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRG 1366
+F TL + E + ++ IN +M ++ E R PS
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLM------------------SPIKTEQRQPSMM 108
Query: 1367 LIGFQNEFITLTRGTGLISHVFEEY----APFYNKSKYDLGKRRNGVLISQY----SGKA 1418
+ + L + VF +Y Y K + L + R + SGK
Sbjct: 109 TRMYIEQRDRLYND----NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 1419 V----AYSLWKLQDR--GRLF-INHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSS 1471
+K+Q + ++F +N + + +L + L +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLN----------LKNCNSPETVL------EMLQKLLYQ 208
Query: 1472 GSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKKL 1523
++ I I LR R LK + L
Sbjct: 209 IDPNWTSRSDHSS-NIKLRIHSIQA-----------ELR-RLLKSKPYENCL 247
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 89.6 bits (223), Expect = 8e-19
Identities = 58/243 (23%), Positives = 89/243 (36%), Gaps = 50/243 (20%)
Query: 71 IVTIMGHVDHGKTSLL----------------DYIRKTNVVFSE---AGGIT---QHIGA 108
I + GHVDHGKT+L+ I +
Sbjct: 11 IGVV-GHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDD 69
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKIS 167
I+F+D PGHE A GA + D +LVVAA++ PQTRE I
Sbjct: 70 EPKFLRR--ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII 127
Query: 168 GVP-LIVAINKIDKLDINLDRIKQDLISEQV------IPEEYGGASPFISISAKTGVGIN 220
GV LI+ NK+D + K++ + Q + P I +SA + I+
Sbjct: 128 GVKNLIIVQNKVDVVS------KEEAL-SQYRQIKQFTKGTWAENVPIIPVSALHKINID 180
Query: 221 KLLENISLQAEILELKAPVTTPAKGVIIES--------RLDKGKGPVATVLIQSGTLRCS 272
L+E I + I ++ ++I S + ++ KG V I G +
Sbjct: 181 SLIEGI--EEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVD 238
Query: 273 DIV 275
+
Sbjct: 239 QEI 241
Score = 88.1 bits (219), Expect = 3e-18
Identities = 74/337 (21%), Positives = 121/337 (35%), Gaps = 87/337 (25%)
Query: 928 IAHVDHGKTTLIDHLLRQSG--TFRKNQNINARI----MDSNEIEKERGITIFSKNCSIE 981
+ HVDHGKTTL+ + +G T +K I + S E
Sbjct: 14 VGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDE 70
Query: 982 YNGTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEG-PMPQTRFVTRKA 1033
R I+ ID PGH + +M+ D +L++ A E P PQTR
Sbjct: 71 PKFLRRISFIDAPGHEVL------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL 124
Query: 1034 LKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQL----------DFPVIYT 1082
+G K +++V NK+D VV ++ + Q+ + P+I
Sbjct: 125 GIIGVKNLIIVQNKVD--------VVSK-----EEALSQYRQIKQFTKGTWAENVPIIPV 171
Query: 1083 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII--------SLEYSSY 1134
SALH N+ L E I +Y+ + + + +I +++
Sbjct: 172 SALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNEL 221
Query: 1135 LGKIGIGRILSGRIKSLQDVVIMNGPDD--------KPNKAKINQIRVFKGLDRVLVNEA 1186
G + G I+ G K Q++ ++ G +P KI+ IR EA
Sbjct: 222 KGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDE----EFKEA 277
Query: 1187 LSGDIVLI-TGI------EEICIGSTICDPSKPNGLP 1216
G +V I T + + +GS I +
Sbjct: 278 KPGGLVAIGTYLDPSLTKADNLLGSIIT---LADAEV 311
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural genomics;
2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 90.0 bits (224), Expect = 1e-18
Identities = 66/348 (18%), Positives = 116/348 (33%), Gaps = 85/348 (24%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSG-----TFRKN----QNIN------ARIMDSNEIEKERG 970
++ HVD GK+TL+ LL RK + + A IMD E+ERG
Sbjct: 37 VVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERG 96
Query: 971 ITI------FSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDA 1018
+T+ F + I+D PGH DF + + + D +L +D
Sbjct: 97 VTVSICTSHF------STHRANFTIVDAPGHRDF------VPNAIMGISQADMAILCVDC 144
Query: 1019 VEGPM-------PQTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLFDK 1067
QT+ A LG I+ +NK+D S R E +
Sbjct: 145 STNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVD 204
Query: 1068 LCATEEQLDF-PVIYTSALHGYANENSKARQGNMIP------LFEAI-----LKYVPVHK 1115
+ E+ +++ P+ S G + L +
Sbjct: 205 IGFFEDNINWVPI---SGFSG-EGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEG 260
Query: 1116 DNSNNPLQLQIISLEYSSYLGKIG---IGRILSGRIKSLQDVVIMNGPDDKPNK--AKIN 1170
N ++P ++ + S G++ SG I+ + + I P++ ++
Sbjct: 261 INKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIY------PSEQSCIVD 314
Query: 1171 QIRVFKGLDRVL----VNEALSGDIVLIT----GIEEICIGSTICDPS 1210
+I+V + + A+ GD V + E+I G
Sbjct: 315 KIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVD 362
Score = 60.7 bits (148), Expect = 2e-09
Identities = 55/273 (20%), Positives = 99/273 (36%), Gaps = 77/273 (28%)
Query: 74 IMGHVDHGKTSL---LDY---------IRKTNVVFSEAG-------------------GI 102
++GHVD GK++L L Y +RK G G+
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 97
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAF-----TAMRARGAKVTDIVVLVVAADDGVM--- 154
T I + T+ + T +D PGH F G D+ +L V
Sbjct: 98 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIM-----GISQADMAILCVDCSTNAFESG 152
Query: 155 ----PQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP--EEYG---G 204
QT+E + A G+ LI+A+NK+D +D + R ++ I +++P + G
Sbjct: 153 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE--IKSKLLPYLVDIGFFED 210
Query: 205 ASPFISISAKTGVGINKL------------------LENISLQAEILELKAPVTTPAKGV 246
++ IS +G G+ K+ LEN + + P
Sbjct: 211 NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFS 270
Query: 247 IIESRLDKGKGPVATVL---IQSGTLRCSDIVV 276
++E K ++ ++SG+++ + +
Sbjct: 271 VLEIIPSKKTSNDLALVSGKLESGSIQPGESLT 303
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A
{Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 88.6 bits (220), Expect = 3e-18
Identities = 77/337 (22%), Positives = 124/337 (36%), Gaps = 67/337 (19%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERG 970
+I HVD GK+T HL+ + G K A ++D + E+ERG
Sbjct: 11 VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERG 70
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PM 1023
ITI E ++ +ID PGH DF + S D +L+I G
Sbjct: 71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKD 130
Query: 1024 PQTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLFDKLCATEEQLDF-P 1078
QTR A LG + IV VNK+D +R + +V T + K+ + + F P
Sbjct: 131 GQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVP 190
Query: 1079 VIYTSALHGYANENSKARQGNM-----------------IPLFEAILKYVPVHKDNSNNP 1121
+ S +G +N N L EAI + ++ P
Sbjct: 191 I---SGWNG---DNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRP-TDKP 243
Query: 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRVFKGLD 1179
L+L + + +G + +GR+ +G IK V P ++ + +
Sbjct: 244 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFA------PAGVTTEVKSVE----MH 293
Query: 1180 RVLVNEALSGDIVLIT----GIEEICIGSTICDPSKP 1212
+ + + GD V ++EI G+ D
Sbjct: 294 HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKND 330
Score = 67.4 bits (165), Expect = 2e-11
Identities = 43/147 (29%), Positives = 56/147 (38%), Gaps = 39/147 (26%)
Query: 72 VTIMGHVDHGKTSL---LDY---------IRKTNVVFSEAG------------------- 100
V ++GHVD GK++ L Y I K +E G
Sbjct: 10 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER 69
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM------ 154
GIT I + T +T +D PGH F G D +L++A G
Sbjct: 70 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK 129
Query: 155 -PQTREAIAHAKISGVP-LIVAINKID 179
QTRE A GV LIVA+NK+D
Sbjct: 130 DGQTREHALLAFTLGVRQLIVAVNKMD 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 82.6 bits (205), Expect = 2e-16
Identities = 87/315 (27%), Positives = 138/315 (43%), Gaps = 67/315 (21%)
Query: 928 IAHVDHGKTTL---IDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNCS 979
I HVDHGKTTL I +L + G A+ EI E+ RGITI N +
Sbjct: 9 IGHVDHGKTTLTAAITKILAEGG--------GAKFKKYEEIDNAPEERARGITI---NAA 57
Query: 980 -IEYN-GTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVT 1030
+EY+ R D PGHAD+ + +M+ D +L++ A +GPMPQTR
Sbjct: 58 HVEYSTAARHYAHTDCPGHADY------VKNMITGTAPLDGCILVVAANDGPMPQTREHL 111
Query: 1031 RKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL--------DFPV 1079
A ++G + +VV VNK D V D+ ++ + L E E L + P+
Sbjct: 112 LLARQIGVEHVVVYVNKADA-------VQDS--EMVE-LVELEIRELLTEFGYKGEETPI 161
Query: 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIG 1139
I SAL + + ++ L +A+ Y+PV + P L + S+ G +
Sbjct: 162 IVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVV 221
Query: 1140 IGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVF-KGLDRVLVNEALSGDIV--LITG 1196
G + G +K + + + + + I +F K LD A +GD + L+ G
Sbjct: 222 TGTLERGILKKGDECEFLGHSKNI--RTVVTGIEMFHKSLD-----RAEAGDNLGALVRG 274
Query: 1197 I--EEICIGSTICDP 1209
+ E++ G + P
Sbjct: 275 LKREDLRRGLVMAKP 289
Score = 74.9 bits (185), Expect = 5e-14
Identities = 69/253 (27%), Positives = 101/253 (39%), Gaps = 70/253 (27%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAG-------------------GIT---QHIGA 108
+ TI GHVDHGKT+L I K + +E G GIT H+
Sbjct: 6 VGTI-GHVDHGKTTLTAAITK---ILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE- 60
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
Y+ H + D PGH + G D +LVVAA+DG MPQTRE + A+ G
Sbjct: 61 YSTAARHYA--HTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG 118
Query: 169 VP-LIVAINKIDKLD----INLDRIK-QDLISEQVIPEEYGGASPFISISAKTGVGINKL 222
V ++V +NK D + + L ++ ++L++E G +P I SA
Sbjct: 119 VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK---GEETPIIVGSAL------CA 169
Query: 223 LENISLQ---AEILELKAPV----TTPAKGVIIESRLDK-------------GKGPVATV 262
LE + + +L V P L+K G+G V T
Sbjct: 170 LEQRDPELGLKSVQKLLDAVDTYIPVP------TRDLEKPFLLPVESVYSIPGRGTVVTG 223
Query: 263 LIQSGTLRCSDIV 275
++ G L+ D
Sbjct: 224 TLERGILKKGDEC 236
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 82.7 bits (204), Expect = 8e-16
Identities = 95/320 (29%), Positives = 140/320 (43%), Gaps = 79/320 (24%)
Query: 928 IAHVDHGKTTL---IDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNCS 979
I HVDHGKTTL I +L ++ ++I EK RGITI N S
Sbjct: 302 IGHVDHGKTTLTAAITTVLAKTY--------GGAARAFDQIDNAPEEKARGITI---NTS 350
Query: 980 -IEYN-GTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVT 1030
+EY+ TR +D PGHAD+ + +M+ D +L++ A +GPMPQTR
Sbjct: 351 HVEYDTPTRHYAHVDCPGHADY------VKNMITGAAQMDGAILVVAATDGPMPQTREHI 404
Query: 1031 RKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL--------DFPV 1079
++G I+V +NK D V D +L + L E E L D P+
Sbjct: 405 LLGRQVGVPYIIVFLNKCDM-------VDDE--ELLE-LVEMEVRELLSQYDFPGDDTPI 454
Query: 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI-----ISLEYSSY 1134
+ SAL A E + ++ L + Y+P + + P L I IS
Sbjct: 455 VRGSALK--ALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGR---- 508
Query: 1135 LGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVF-KGLDRVLVNEALSGDIV- 1192
G + GR+ G IK ++V I+ + + K+ + +F K LD E +G+ V
Sbjct: 509 -GTVVTGRVERGIIKVGEEVEIVGIKETQ--KSTCTGVEMFRKLLD-----EGRAGENVG 560
Query: 1193 -LITGI--EEICIGSTICDP 1209
L+ GI EEI G + P
Sbjct: 561 VLLRGIKREEIERGQVLAKP 580
Score = 77.7 bits (191), Expect = 3e-14
Identities = 75/251 (29%), Positives = 107/251 (42%), Gaps = 68/251 (27%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAG-------------------GIT---QHIGA 108
+ TI GHVDHGKT+L I V ++ GIT H+
Sbjct: 299 VGTI-GHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHV-E 353
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
Y+ T H + +D PGH + GA D +LVVAA DG MPQTRE I + G
Sbjct: 354 YDTPTRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 411
Query: 169 VP-LIVAINKIDKLD----INLDRIK-QDLISEQVIPEEYGGASPFISISAKTGVGINKL 222
VP +IV +NK D +D + L ++ ++L+S+ P G +P + SA K
Sbjct: 412 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSAL------KA 462
Query: 223 LENISLQAE-ILELKAPV----TTPAKGVIIESRLDK-------------GKGPVATVLI 264
LE + ILEL + P E +DK G+G V T +
Sbjct: 463 LEGDAEWEAKILELAGFLDSYIPEP------ERAIDKPFLLPIEDVFSISGRGTVVTGRV 516
Query: 265 QSGTLRCSDIV 275
+ G ++ + V
Sbjct: 517 ERGIIKVGEEV 527
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 77.6 bits (192), Expect = 7e-15
Identities = 91/328 (27%), Positives = 140/328 (42%), Gaps = 83/328 (25%)
Query: 928 IAHVDHGKTTL---IDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNCS 979
I HVDHGKTTL + ++ N + D +I E+ RGITI N +
Sbjct: 17 IGHVDHGKTTLTAALTYVAAAENP-------NVEVKDYGDIDKAPEERARGITI---NTA 66
Query: 980 -IEYN-GTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVT 1030
+EY R + +D PGHAD+ I +M+ D +L++ A +GPMPQTR
Sbjct: 67 HVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 1031 RKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL--------DFPV 1079
A ++G IVV +NK+D V D +L D L E + L + PV
Sbjct: 121 LLARQVGVPYIVVFMNKVDM-------VDDP--ELLD-LVEMEVRDLLNQYEFPGDEVPV 170
Query: 1080 IYTSALHGYANENSKARQGNMIP--------LFEAILKYVPVHKDNSNNPLQLQI----- 1126
I SAL + + L +AI +Y+P + + P + +
Sbjct: 171 IRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230
Query: 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVF-KGLDRVLVNE 1185
I+ G + GRI G++K +V I+ G + K + + + K L E
Sbjct: 231 ITGR-----GTVATGRIERGKVKVGDEVEIV-GLAPETRKTVVTGVEMHRKTLQ-----E 279
Query: 1186 ALSGDIV--LITGI--EEICIGSTICDP 1209
++GD V L+ G+ EE+ G + P
Sbjct: 280 GIAGDNVGVLLRGVSREEVERGQVLAKP 307
Score = 72.6 bits (179), Expect = 3e-13
Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 27/134 (20%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-----SITF----- 120
+ TI GHVDHGKT+L + V + + Y + IT
Sbjct: 14 VGTI-GHVDHGKTTLTAALTY---VAAAENPNVEVK-DYGDIDKAPEERARGITINTAHV 68
Query: 121 -----------LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV 169
+D PGH + GA D +LVV+A DG MPQTRE I A+ GV
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 170 P-LIVAINKIDKLD 182
P ++V +NK+D +D
Sbjct: 129 PYIVVFMNKVDMVD 142
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 68.1 bits (167), Expect = 8e-12
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 28/191 (14%)
Query: 46 LNDPESFLLNEYNKNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQ 104
L DP + + + + + G + GK+S ++ + NV + S+ G T
Sbjct: 18 LEDPRRYTMRLPDAG-------FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTT 70
Query: 105 H--IGAYNVVTNHGSITFLDTPG-HEAFTAMRARGAKV------TDIVVLVVAADDGVMP 155
+ + G +T +DTPG + R R K D +LV D P
Sbjct: 71 DPVYKSMEL-HPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVT--DSAPTP 127
Query: 156 QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKT 215
+ + K +P +V +NKID L + +K + E A + +SA
Sbjct: 128 YEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKG-------LYESRYEA-KVLLVSALQ 179
Query: 216 GVGINKLLENI 226
G + + + I
Sbjct: 180 KKGFDDIGKTI 190
Score = 54.3 bits (131), Expect = 2e-07
Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 47/188 (25%)
Query: 934 GKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIID 991
GK++ ++ L+ Q S + S E+ +T ++D
Sbjct: 46 GKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVT----------------LVD 89
Query: 992 TPGHADFG--GE-----VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 1044
TPG D G G R+ D +L+ D+ P V ++ +VVV
Sbjct: 90 TPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYE--DDVVNLFKEMEIPFVVVV 147
Query: 1045 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLF 1104
NKID + E + E + + V+ SAL +
Sbjct: 148 NKIDVLGEKAEELKG----------LYESRYEAKVLLVSALQKK----------GFDDIG 187
Query: 1105 EAILKYVP 1112
+ I + +P
Sbjct: 188 KTISEILP 195
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10,
RNA modification, thump domai; HET: EPE; 2.0A {Homo
sapiens}
Length = 530
Score = 58.7 bits (141), Expect = 1e-08
Identities = 26/164 (15%), Positives = 43/164 (26%), Gaps = 41/164 (25%)
Query: 703 TGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEK 762
L + E K Y A+I N + IE
Sbjct: 391 RDLQLVTREAIGHMKEGEEEKTKTYSALIWT------------------NKAIQKKDIEF 432
Query: 763 ILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTL 822
+ KI Q P+ + R +R I+ + + L
Sbjct: 433 LNDIKDLKIDQKTPLRVLHR----------RP-----LAVRARVIHFMETQYVDEHHFRL 477
Query: 823 RIHCSKGTYIRVL--------SEDIGKMLGCGAHLKYLRRIGID 858
+ GTYI+ +IG ++ A + L +D
Sbjct: 478 HLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVD 521
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 54.8 bits (133), Expect = 1e-07
Identities = 35/166 (21%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 81 GKTSLLDYIRKTN--VVFSEAG----GITQHIGAYNVVTNHG-SITFLDTPG-------- 125
GK+SL++ + +V + AG + T + +DT G
Sbjct: 187 GKSSLVNAMLGEERVIVSNVAGTTRDAV------DTSFTYNQQEFVIVDTAGMRKKGKVY 240
Query: 126 --HEAFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD 182
E ++ +RA A +++V +V+ ++G++ Q + +A +G +++ +NK D +D
Sbjct: 241 ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD 300
Query: 183 INLDRIKQ--DLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ +K+ + I + +Y +P + +SA T I+ L+ I
Sbjct: 301 KDESTMKEFEENIRDHFQFLDY---APILFMSALTKKRIHTLMPAI 343
Score = 45.2 bits (108), Expect = 2e-04
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 980 IEYNGTRINIIDTPG-----HADFGGE---VERILSMVDN---VLLLIDAVEGPMPQTRF 1028
YN I+DT G E V R L +D V +++D EG + Q +
Sbjct: 218 FTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR 277
Query: 1029 VTRKALKLGFKPIV-VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALH 1086
+ A + G K +V VVNK D + + + ++ D + LD+ P+++ SAL
Sbjct: 278 IAGYAHEAG-KAVVIVVNKWDAVDKDESTMKEFEENIRDHF----QFLDYAPILFMSALT 332
Query: 1087 G 1087
Sbjct: 333 K 333
Score = 40.9 bits (97), Expect = 0.003
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
D+++ +V +GV E + P+++A+NK+D + I +
Sbjct: 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE-----------MRANIYD 132
Query: 201 EYG-GASPFISISAKTGVGINKLLENI 226
Y G IS G+G+ LL+ +
Sbjct: 133 FYSLGFGEPYPISGTHGLGLGDLLDAV 159
Score = 39.0 bits (92), Expect = 0.011
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 981 EYNGTRINIIDTPGHADFGGEVERILSMV-----------DNVLLLIDAVEGPMPQTRFV 1029
E+ N+IDT G E L+ + D ++ +++ EG V
Sbjct: 47 EWLNYDFNLIDTGG---IDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEV 103
Query: 1030 TRKALKLGFKP-IVVVNKIDRSNARPE 1055
+ + KP ++ VNK+D + R
Sbjct: 104 AKILYRTK-KPVVLAVNKLDNTEMRAN 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 54.0 bits (131), Expect = 1e-07
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 24/122 (19%)
Query: 118 ITFLDTPG-HEAFTAM------RARGA-KVTDIVVLVVAADDGVMPQTREAIAHAK--IS 167
I F+DTPG H+ A+ A + VV VV P+ K +
Sbjct: 57 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG 116
Query: 168 GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF---ISISAKTGVGINKLLE 224
VP+++ NK+D + + Y P +SA + +L
Sbjct: 117 KVPILLVGNKLDAAK-----------YPEEAMKAYHELLPEAEPRMLSALDERQVAELKA 165
Query: 225 NI 226
++
Sbjct: 166 DL 167
Score = 45.5 bits (109), Expect = 8e-05
Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 55/194 (28%)
Query: 934 GKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINII- 990
GK+TL+++LL + + Q R+ RGI R I+
Sbjct: 19 GKSTLLNNLLGVKVAPISPRPQTTRKRL---------RGI----------LTEGRRQIVF 59
Query: 991 -DTPG---HADFGGE-----VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP- 1040
DTPG D GE V L+ V+ V+ ++D P P+ V R L K
Sbjct: 60 VDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP 119
Query: 1041 -IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQG 1098
++V NK+D + E + A E L SAL
Sbjct: 120 ILLVGNKLDAAKYPEE-----------AMKAYHELLPEAEPRMLSALDER---------- 158
Query: 1099 NMIPLFEAILKYVP 1112
+ L +L +P
Sbjct: 159 QVAELKADLLALMP 172
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 1e-07
Identities = 68/417 (16%), Positives = 119/417 (28%), Gaps = 167/417 (40%)
Query: 27 QETAMILVEEMGHVAHASK-----------LNDPESFLLNEYNKNITAESLVRAPIVTIM 75
+ +A L E + A K L +P + +Y L+ PI
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--------LLSIPI---- 236
Query: 76 GHVDHGKTSL-LDYIRKTNVVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEAFTAMR 133
S L I G+ Q + Y V G TPG E + ++
Sbjct: 237 --------SCPL--I-----------GVIQ-LAHYVVTAKLLGF-----TPG-ELRSYLK 268
Query: 134 ARGAKVTDIVV-LVVAADD-------------------GV-----MPQT-------REAI 161
+V + +A D GV P T +++
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 162 AHAK--------ISGVPLIVAINKIDKLDINLDRIKQDLIS-----EQVI----PEE-YG 203
+ + IS + + ++K + +L KQ IS + ++ P+ YG
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 204 GASPFISISAKTGVGINK------------------------LLE-------------NI 226
A +G+ ++ LL N+
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 227 SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSD---IVVAGASYGR 283
S A+ +++ PV G S L G ++ ++ A++
Sbjct: 449 SFNAK--DIQIPVYDTFDG----SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH-- 500
Query: 284 IRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVI----LNEKKAREIGLFRQ 336
IL+ GP + LT G + VI L+ + G F+Q
Sbjct: 501 -----------ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG-FKQ 545
Score = 54.7 bits (131), Expect = 3e-07
Identities = 98/662 (14%), Positives = 200/662 (30%), Gaps = 199/662 (30%)
Query: 569 ITIT----EVKI---TLDYSYAKIFFTTFNKDI---SIKNILDN--LSKAKNYIRF---- 612
+T++ E + T + A FNK + + D+ + A+ +F
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 613 --KLSKKLHIHTLPIL---------NFFYDNSIENAMMISKLIDGIKYCMQFHIKKNKNI 661
+ +L + N I +A+ L + + K K +
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQE-----NDTTLVKTKEL 122
Query: 662 I----HGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFG-----E 712
I ++ +P+ SN+A L A G A FG +
Sbjct: 123 IKNYITARIMAKRPFDKKSNSA------LFRAVG---EGNAQLVA------IFGGQGNTD 167
Query: 713 ATKFSNYLSE-ADKY--YEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHG 769
+Y E D Y Y ++ D I+ + L
Sbjct: 168 -----DYFEELRDLYQTYHVLVG---------------DL-------IKFSAETLSELIR 200
Query: 770 KISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKG 829
+++ +G+ + ++ + Y + I + P + +
Sbjct: 201 TTLDAEKVFT----QGLNILEWLENPSN-TPDKDY-----LLSIPISCPLIGV---IQLA 247
Query: 830 TYIRVLSEDIGKMLGC--GAHLKYLRRIGIDKLTLDKCLNIDTIIKYS----EYERISSL 883
Y+ K+LG G YL+ G + L I + +
Sbjct: 248 HYVVTA-----KLLGFTPGELRSYLK--GA--TGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 884 IPIDILLSSFGIIYLSDLLSKRFLHGQNLFLSDENIYILIKSAIIAHVDHGKTTLIDHLL 943
I +L F I + + L S + +++ + +L
Sbjct: 299 A-ITVL---FFI----------GVRCYEAY----PNTSLPPSILEDSLENNEGVP-SPML 339
Query: 944 RQSGTFRKNQNINARIMDSN-EIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002
S ++ + + +N + + + I S+ NG + ++ + G
Sbjct: 340 SISNLTQE--QVQDYVNKTNSHLPAGKQVEI-----SL-VNGAKNLVV-S-GPP------ 383
Query: 1003 ERILSMVDNVLLLIDAVEGPMPQTR--FVTRK-ALKLGFKPIVVVNKIDRSNARP---EW 1056
+ L ++ L A G + Q+R F RK F P+ P
Sbjct: 384 -QSLYGLNLTLRKAKAPSG-LDQSRIPFSERKLKFSNRFLPVAS----------PFHSHL 431
Query: 1057 VVDAT----FDLF-DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP-LFEAILKY 1110
+V A+ DL + + + + PV Y + + + G++ + + I++
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPV-Y----DTFDGSDLRVLSGSISERIVDCIIR- 485
Query: 1111 VPVHKDNSNNPLQLQIISLE--YSSYLGKI--------GIGRILSGRIKSLQDVVIMNGP 1160
+PV + + I+ +S LG + G+ I++G +L P
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG---TLD-----INP 537
Query: 1161 DD 1162
DD
Sbjct: 538 DD 539
Score = 53.9 bits (129), Expect = 5e-07
Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 64/228 (28%)
Query: 496 LEGLIRR-------DSKIRI-LRN--KNIIWTGELDSLKRFKDNVKEVKAGFECERLSRI 545
++ + + ++ I L N KN++ +G SL +++ KA ++ SRI
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRI 407
Query: 546 ENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKI---FFTTFNKDISIKNILDN 602
+R K+ + + F + + I +
Sbjct: 408 PFS-ER-----------------------KLKFSNRFLPVASPFHSHLLVP-ASDLINKD 442
Query: 603 LSKAKNYIRFKLSKKLHIHTLPILNFF--YDNSIENAMMISKLIDGIKYCMQFHIKK--N 658
L KN + F +K + I P+ + F D + + + +++D I + +
Sbjct: 443 L--VKNNVSFN-AKDIQI---PVYDTFDGSDLRVLSGSISERIVDCI-IRLPVKWETTTQ 495
Query: 659 KNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGY------TGTLDP 700
H +L P G S + L + K G GTLD
Sbjct: 496 FKATH-ILDFG-PGGASG------LGVLTHRNKDGTGVRVIVAGTLDI 535
Score = 48.9 bits (116), Expect = 2e-05
Identities = 88/546 (16%), Positives = 165/546 (30%), Gaps = 204/546 (37%)
Query: 878 ERISSLIPIDILLSSFGIIYLSD------------LLSKRFLHGQNLFLSDENIYILIKS 925
+ ++ P + L+ F + Y+S +L+ +N +L +I
Sbjct: 52 DEPTT--PAE-LVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI------ 101
Query: 926 AIIAHVDHGKTTLIDHLLRQS-GTFRKNQNI-----NARIMDSNEIEKERGITIFSKNCS 979
H L LL+++ T K + + ARIM +K+ +F +
Sbjct: 102 ----H------ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR---A 148
Query: 980 IEYNGTRINIIDTPGHADFGG---------E-----------VERILSMVDNVLL----- 1014
+ ++ A FGG E V ++ L
Sbjct: 149 VGEGNAQL-------VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 1015 -------------LIDAVEGP---------------MPQ---TRF----VTRKALKLGFK 1039
+++ +E P P + VT K LGF
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL--LGFT 259
Query: 1040 PIVVVNKIDRSNARPEWVVDA-------TFDLFDKLCAT----------EEQLDFPVIY- 1081
P + + + + + +V A +++ F +P
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 1082 TSALHGYANENSKARQGNMIPLF-------EAILKYVPVHKDNSNNPLQLQI-ISLEYSS 1133
++ + EN+ +G P+ E + Y V+K NS+ P Q+ ISL
Sbjct: 320 PPSILEDSLENN---EGVPSPMLSISNLTQEQVQDY--VNKTNSHLPAGKQVEISL---- 370
Query: 1134 YLGKIGI-GR---ILSGRIKSLQDVV-----IMNGPDDKPNKAKINQIRVFKGLDRVL-- 1182
+ G ++SG +SL + ++ ++ R K +R L
Sbjct: 371 ------VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RKLKFSNRFLPV 423
Query: 1183 ---------------VNEALSGDIVLITGIEEICI-------GSTICDPSKPNGLPMLNI 1220
+N+ L + V ++I I GS + S + + +
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNA-KDIQIPVYDTFDGSDLRVLSG-SISERI-V 480
Query: 1221 DE-PTLTINFMVNNSPLA------GREGKFITTRQIKNRLDHEIKNNIGLRV----TQNK 1269
D L + + A G G + L H K+ G+RV T +
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGG----ASGL-GVLTHRNKDGTGVRVIVAGTLDI 535
Query: 1270 HDDSIY 1275
+ D Y
Sbjct: 536 NPDDDY 541
Score = 46.6 bits (110), Expect = 8e-05
Identities = 44/265 (16%), Positives = 79/265 (29%), Gaps = 95/265 (35%)
Query: 280 SYG-RIRSMLNENGKN--ILEAGPS--------IPVEIQGLTKVPFSGEELFVILNEKKA 328
+YG I ++ N N I G + + + E++F +NE
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 329 REIGLFRQGKFRDVKLSKQKLHKTEN-----------MFNDINKEKVKNLLIIIKTDVY- 376
FR K L T+ F D+ + +I D
Sbjct: 1716 SYT-------FRS---EKGLLSATQFTQPALTLMEKAAFEDLKSKG------LIPADATF 1759
Query: 377 -----GSRE---------VLTESLKNLSTDKVKI-----QVIHNAV--GNINESDINL-A 414
G E V+ S++ V++ + AV + S+ + A
Sbjct: 1760 AGHSLG--EYAALASLADVM--SIE----SLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 415 IASKAIIIGFNV--------RADASTRKLAQINNINIRYHNII-----------YNIIKE 455
I + F+ R T L +I N N+ + N++
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 456 IKSEITNLIPLEK-------KENLL 473
IK + ++I L+K + +L
Sbjct: 1872 IKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 45.8 bits (108), Expect = 1e-04
Identities = 79/511 (15%), Positives = 146/511 (28%), Gaps = 165/511 (32%)
Query: 519 ELDSLKRF----KDNVKEVKAGFECERLSRIENQIQRDI---SEIIAFDIQNPIINIITI 571
EL + +F V+ K G + L+ + + ++I A + N T+
Sbjct: 59 EL--VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 572 TEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHIHTL-----PIL 626
+ K + D + L + +
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSAL--FRAVG-------EGNAQLVAIFGGQGNTD 167
Query: 627 NFF------YDNSIENAMMISKLIDGI----KYCMQFHIKKNKNIIHGVLLL-------- 668
++F Y +++ LI ++ + K G+ +L
Sbjct: 168 DYFEELRDLYQTY---HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 669 --DKPYGLSSNNALKKI------KYLLNAKKVGYT-GTLDPFATGLL--------PLCFG 711
DK Y LS + I Y++ AK +G+T G L + G +
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 712 EATKFSNYLSEADKYYEAIIHLGI------------------TTETGD--------IEG- 744
E + ++ K + +G+ + E + I
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 745 ------KIID-FNKNIPNS--IEIIEKILINFHGKISQI---PPMYSALKYKGIPLYKY- 791
++ N ++P +EI L+N G + + PP +L + L K
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEI---SLVN--GAKNLVVSGPP--QSLYGLNLTLRKAK 397
Query: 792 ARSGITI------KRKL----RYIKIYKITIIDYTIPYLTLRIHCS--KGTYIRVLSEDI 839
A SG+ +RKL R++ + P+ H + + +
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPV--------ASPF-----HSHLLVPASDLINKDLV 444
Query: 840 GKMLGC-GAHLK---YLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLI---PID----- 887
+ ++ Y G D L ++ ERI I P+
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS----------ERIVDCIIRLPVKWETTT 494
Query: 888 ------ILLSSFGIIYLSDL--LSKRFLHGQ 910
IL FG S L L+ R G
Sbjct: 495 QFKATHILD--FGPGGASGLGVLTHRNKDGT 523
Score = 45.0 bits (106), Expect = 2e-04
Identities = 93/506 (18%), Positives = 157/506 (31%), Gaps = 187/506 (36%)
Query: 1118 SNNPLQLQIISLEYS------SYLGKIGIGRILSGR-IKSLQDVVIMNGPDDKPNKAKIN 1170
S PL L SLE+ S+ I L + K L + DD+P
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFF----IASQLQEQFNKILPEPTEGFAADDEP-TTPAE 59
Query: 1171 QIRVFKGL--DRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTIN 1228
+ F G V ++ D VL + E
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-------------------------FENC 94
Query: 1229 FMVNNSP--LAGREGKFITTRQIKNRLDHEIKN-----NIGLRVTQNKHDDSIYEVSGRG 1281
++ N LA + + T +K + IKN + R K + +++ G G
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTK--ELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 1282 ELHLTILI-----ENMRREGY--ELSVSRPRVIFKTLNGELYEPYENLFVDI-------- 1326
L + I + Y EL +LY+ Y L D+
Sbjct: 153 NAQL-VAIFGGQGNT---DDYFEELR-------------DLYQTYHVLVGDLIKFSAETL 195
Query: 1327 -EEINQGIIMQKLNYRGGDLKN-IEINEKERVRLEY--RIP-SRGLIG-FQ--------- 1371
E I + +K+ +G ++ +E N +Y IP S LIG Q
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 1372 ------NEFITLTRGT-----GLISHVF----EEYAPFYNKSKYDL------GKRRNGVL 1410
E + +G GL++ V + + F+ + + G R
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR----- 309
Query: 1411 ISQ--YSGKAVAYSLWKLQDRGRLFINHNDLVYEG----MIIGIHSRDNDLLVNPIKEKQ 1464
Y ++ S+ L+D + +N EG M L ++ + ++Q
Sbjct: 310 -CYEAYPNTSLPPSI--LED----SLENN----EGVPSPM----------LSISNLTQEQ 348
Query: 1465 L------TNIRSSGSDEAIQLISPIKITLEYAIEFIN-DDELVEIT--PK-----NIRLR 1510
+ TN ++I+L +N LV ++ P+ N+ LR
Sbjct: 349 VQDYVNKTNSHLPAG-------KQVEISL------VNGAKNLV-VSGPPQSLYGLNLTLR 394
Query: 1511 KRFLKEN---------ERKKKL-HKF 1526
K ERK K ++F
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRF 420
Score = 42.7 bits (100), Expect = 0.001
Identities = 62/353 (17%), Positives = 101/353 (28%), Gaps = 148/353 (41%)
Query: 27 QETAMILVEEMGHVAHASKL-NDPESFLLNEYNKNITAESLVR-API-VTIMGHVDHGK- 82
QE M + + A + N ++ + Y +I +V P+ +TI + GK
Sbjct: 1627 QEQGMGM-DLYKTSKAAQDVWNRADNHFKDTYGFSILD--IVINNPVNLTIHFGGEKGKR 1683
Query: 83 ----------TSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLD-T----P--- 124
+++D KT +F E I +H +Y T L T P
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKE---INEHSTSY---TFRSEKGLLSATQFTQPALT 1737
Query: 125 --GHEAFTAMRARGAKVTDIVV----------LVVAADDGVMP--------QTR-EAIAH 163
AF ++++G D L A VM R +
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA--DVMSIESLVEVVFYRGMTMQV 1795
Query: 164 AKISGVPL---------IVAINKIDKLDINLDRIKQDLISEQV--IPEEYGGASPFISIS 212
A VP ++AIN R+ E + + E +
Sbjct: 1796 A----VPRDELGRSNYGMIAINP--------GRVAASFSQEALQYVVER---------VG 1834
Query: 213 AKTGVGINKLLE----NIS-LQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSG 267
+TG L+E N+ Q + +G
Sbjct: 1835 KRTG----WLVEIVNYNVENQQ----------------YVA-----------------AG 1857
Query: 268 TLRCSDIVVAGASYGRIRSMLNENG-KNILEAGPSIPVEIQGLTKVPFSGEEL 319
LR D V ++LN + I +I L + S EE+
Sbjct: 1858 DLRALDTVT---------NVLNFIKLQKI---------DIIEL-QKSLSLEEV 1891
Score = 39.6 bits (92), Expect = 0.010
Identities = 57/325 (17%), Positives = 99/325 (30%), Gaps = 120/325 (36%)
Query: 528 DNVKEVKAGFECERLSRIENQIQRD----ISEIIAFDIQNPIINIITITEVK---ITLDY 580
K + + R +N + I +I+ NP+ I K I +Y
Sbjct: 1637 KTSKAAQDVWN-----RADNHFKDTYGFSILDIVI---NNPVNLTIHFGGEKGKRIRENY 1688
Query: 581 SYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIEN---A 637
S A IF T + + + I +++ F+ K L T + A
Sbjct: 1689 S-AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT------------QFTQPA 1735
Query: 638 MM-ISKLIDGIKYCMQFHIKKNKNIIHGVLLLDKPY-GLS----SNNALKKIKYLLNAKK 691
+ + K F K+K G++ D + G S + AL
Sbjct: 1736 LTLMEKAA--------FEDLKSK----GLIPADATFAGHSLGEYA--AL----------- 1770
Query: 692 VGYTGTLDPFATGLLPLCF--GEATKF---------SNY-----------LSEADKYYEA 729
+ + L+ + F G + SNY S + + +
Sbjct: 1771 ASLADVM-SIES-LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 730 IIHLGITTETGDI-EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPL 788
++ + TG + E I+ N N+ N + G + AL
Sbjct: 1829 VVE-RVGKRTGWLVE--IV--NYNVENQQYVAA-------GDLR-------ALD------ 1863
Query: 789 YKYARSGITIKRKLRYIKIYKITII 813
T+ L +IK+ KI II
Sbjct: 1864 --------TVTNVLNFIKLQKIDII 1880
Score = 37.3 bits (86), Expect = 0.047
Identities = 48/334 (14%), Positives = 93/334 (27%), Gaps = 133/334 (39%)
Query: 84 SLLDYIRKTN-----VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAK 138
S+LD I N + F G + I N+ ++ F +T +
Sbjct: 1660 SILD-IVINNPVNLTIHFGGEKG--KRIRE-----NYSAMIF-ETIVDGKLKTEKIFKEI 1710
Query: 139 VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI 198
++ G++ T P + + K +DL S+ +I
Sbjct: 1711 NEHSTSYTFRSEKGLLSAT--QFTQ------PALTLMEKA---------AFEDLKSKGLI 1753
Query: 199 PE----------EYGGASPFISISAKTGVGINKLLENISL--QAEILELKAPVTTPAKGV 246
P EY +A L A+++ +++ V
Sbjct: 1754 PADATFAGHSLGEY---------AA--------------LASLADVMSIESLVE------ 1784
Query: 247 IIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEI 306
++ R G V + L S+ + + GR+ + ++ EA + +
Sbjct: 1785 VVFYR-----GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ------EALQYVVERV 1833
Query: 307 QGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKN 366
T G + EI V N +N V+N
Sbjct: 1834 GKRT-----GWLV----------EI----------V-----------N-YN------VEN 1850
Query: 367 LLIII---KTDVYGSREVLTESLKNLSTDKVKIQ 397
+ + + +T L + K+ I
Sbjct: 1851 QQYVAAGDLRAL----DTVTNVLNFIKLQKIDII 1880
Score = 31.9 bits (72), Expect = 2.4
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 26/111 (23%)
Query: 1412 SQ--------YSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDN--DLLVNP-- 1459
SQ Y A +W D H Y I+ I +N +L ++
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADN------HFKDTYGFSILDI-VINNPVNLTIHFGG 1678
Query: 1460 -----IKEKQLTNIRSSGSDEAIQLISPIKITLEYA--IEFINDDELVEIT 1503
I+E I + D ++ K E++ F ++ L+ T
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 54.8 bits (133), Expect = 2e-07
Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 34/169 (20%)
Query: 81 GKTSLLDYI----RKTNVVFSEAG----GITQHIGAYNVVTNHG-SITFLDTPG------ 125
GK++L + I R +V G + + V G F+DT G
Sbjct: 192 GKSTLFNAILNKER--ALVSPIPGTTRDPV------DDEVFIDGRKYVFVDTAGLRRKSR 243
Query: 126 -----HEAFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKID 179
E ++ R + + D+VV+V+ A G+ Q + + G +V NK D
Sbjct: 244 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD 303
Query: 180 KLDINLDRIKQ--DLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ R + L E++ +Y SP I SA G I+++++ +
Sbjct: 304 LVVHREKRYDEFTKLFREKLYFIDY---SPLIFTSADKGWNIDRMIDAM 349
Score = 43.3 bits (103), Expect = 6e-04
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 23/124 (18%)
Query: 980 IEYNGTRINIIDTPG------HADFGGE---VERILSMVDN---VLLLIDAVEGPMPQTR 1027
+ +G + +DT G E R++ ++ V++++DA +G Q +
Sbjct: 223 VFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ 282
Query: 1028 FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF----PVIYTS 1083
+ + G +VV NK D R + +D F K E+L F P+I+TS
Sbjct: 283 RMAGLMERRGRASVVVFNKWDLVVHR-----EKRYDEFTK--LFREKLYFIDYSPLIFTS 335
Query: 1084 ALHG 1087
A G
Sbjct: 336 ADKG 339
Score = 42.5 bits (101), Expect = 0.001
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
D+V+ VV G+ + + S V I+ NK + L +V PE
Sbjct: 83 DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL---------REFEREVKPE 133
Query: 201 EYG-GASPFISISAKTGVGINKLLENI 226
Y G I +SA+ + ++ +LE I
Sbjct: 134 LYSLGFGEPIPVSAEHNINLDTMLETI 160
Score = 36.7 bits (86), Expect = 0.066
Identities = 27/144 (18%), Positives = 45/144 (31%), Gaps = 35/144 (24%)
Query: 981 EYNGTRINIIDTPGHADFGGE----------VERILSMVDNVLLLIDAVEGPMPQTRFVT 1030
E+ G ++DT G + ++ D VL ++D G + +
Sbjct: 45 EWYGKTFKLVDTCGV-FDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLA 103
Query: 1031 RKALKLGFKP-IVVVNKIDRSNARPEWVVDATFDL-FDKLCATEEQLDFPVIYTSALHGY 1088
K I+V NK + V + L F + PV SA H
Sbjct: 104 DFLRKST-VDTILVANKAENLREFEREVKPELYSLGFGEP--------IPV---SAEHNI 151
Query: 1089 ANENSKARQGNMIPLFEAILKYVP 1112
N+ + E I+K +
Sbjct: 152 ----------NLDTMLETIIKKLE 165
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 53.2 bits (129), Expect = 3e-07
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPG-HEAFTAMR--------ARGA-KVTDIVVLVVAADDGVMPQTREAIAHA-KI 166
I FLDTPG +E + A+ + + D+++ ++ A +G P+ E + K
Sbjct: 61 IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP 120
Query: 167 SGVPLIVAINKIDKLDINLDRIKQDLISE-QVIPEEYGGASPFISISAKTGVGINKLLEN 225
P+IV INKIDK+ ++++ I +++ + + ISA G +++L++
Sbjct: 121 LNKPVIVVINKIDKIG-----PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKT 175
Query: 226 I 226
I
Sbjct: 176 I 176
Score = 49.0 bits (118), Expect = 6e-06
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 990 IDTPG-----HADFGGE-----VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
+DTPG +D G ++ L D +L +IDA EG P+ + + +K K
Sbjct: 64 LDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK 123
Query: 1040 P-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQ 1097
P IVV+NKID+ L D++ ++ + ++ SAL G
Sbjct: 124 PVIVVINKIDKIGPA-----KNVLPLIDEI--HKKHPELTEIVPISALKGA--------- 167
Query: 1098 GNMIPLFEAILKYVPVH 1114
N+ L + ILKY+P
Sbjct: 168 -NLDELVKTILKYLPEG 183
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 52.2 bits (125), Expect = 7e-07
Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 28/175 (16%)
Query: 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG--- 125
P V I GH + GK++LL + + T+ I + +DTPG
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLD 226
Query: 126 ----------HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAH---AKISGVPLI 172
+A A+R G + I + + G + + + + +P +
Sbjct: 227 RPISERNEIEKQAILALRYLGNLI--IYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFL 284
Query: 173 VAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
V INKID D N+ R+++ + + + I ISA G GI+ + E I
Sbjct: 285 VVINKIDVADEENIKRLEKFVKEKGL---------NPIKISALKGTGIDLVKEEI 330
Score = 38.3 bits (89), Expect = 0.018
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 24/122 (19%)
Query: 980 IEYNGTRINIIDTPG---HADFG---GEVERILSMV---DNVLLLIDAVE--GPMPQTRF 1028
E R IIDTPG E + IL++ + ++ + D E G + +
Sbjct: 209 FEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQI 268
Query: 1029 VTRKALKLGF--KP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSAL 1085
+ + F P +VV+NKID ++ + +L ++ I SAL
Sbjct: 269 HLFEEVHGEFKDLPFLVVINKIDVADE----------ENIKRLEKFVKEKGLNPIKISAL 318
Query: 1086 HG 1087
G
Sbjct: 319 KG 320
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 48.7 bits (117), Expect = 2e-06
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 16/89 (17%)
Query: 141 DIVVLVVAADDGVMPQTRE---AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQV 197
D V+ +V E + +P+ V NK D + E +
Sbjct: 85 DRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD------------ITGETL 132
Query: 198 IPEEYGGASPFISISAKTGVGINKLLENI 226
E G I +SA+TG G++ L ++
Sbjct: 133 GMSEVNGH-ALIRLSARTGEGVDVLRNHL 160
Score = 42.5 bits (101), Expect = 2e-04
Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 26/120 (21%)
Query: 979 SIEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVT 1030
I +G ++IIDT G + EVERI + D VL ++D +
Sbjct: 46 HIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW 105
Query: 1031 RKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
+ + VV NK D + E +I SA G
Sbjct: 106 PEFIARLPAKLPITVVRNKADITGETLG---------------MSEVNGHALIRLSARTG 150
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 51.0 bits (123), Expect = 2e-06
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
DIV+ V+ A + + R+ + +I +V INK+D ++ I+E+ I
Sbjct: 325 DIVLFVLDASSPLDEEDRKILE--RIKNKRYLVVINKVDVVE---------KINEEEIKN 373
Query: 201 EYGGASPFISISAKTGVGINKLLENIS 227
+ G + ISA G G+ KL E+I
Sbjct: 374 KLGTDRHMVKISALKGEGLEKLEESIY 400
Score = 43.3 bits (103), Expect = 6e-04
Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 32/153 (20%)
Query: 979 SIEYNGTRINIIDTPG-HADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFV 1029
I G I+DT G ++ VER+ + D VL ++DA + R +
Sbjct: 285 EIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI 344
Query: 1030 TRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYA 1089
+ +VV+NK+D E + + D ++ SAL G
Sbjct: 345 --LERIKNKRYLVVINKVDVVEKINE-----------EEIKNKLGTDRHMVKISALKGE- 390
Query: 1090 NENSKARQGNMIPLFEAILKYVPVHKDNSNNPL 1122
+ L E+I + + ++ L
Sbjct: 391 ---------GLEKLEESIYRETQEIFERGSDSL 414
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 50.3 bits (121), Expect = 3e-06
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 22/134 (16%)
Query: 111 VVTNHGSITFLDTPG------H---EAF--TAMRARGAKVTDIVVLVV------AADDGV 153
+ N+ I +DT G +AF T A+ + D ++LV+
Sbjct: 221 IPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYS---DALILVIDSTFSENLLIET 277
Query: 154 MPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISA 213
+ + E + +SG P++V +NKIDK++ D K+ + E++ E Y I ISA
Sbjct: 278 LQSSFEILREIGVSGKPILVTLNKIDKIN--GDLYKKLDLVEKLSKELYSPIFDVIPISA 335
Query: 214 KTGVGINKLLENIS 227
+ L + I
Sbjct: 336 LKRTNLELLRDKIY 349
Score = 31.1 bits (71), Expect = 3.3
Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 31/104 (29%)
Query: 1009 VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068
+L I P+ +V +NKID+ + DL +KL
Sbjct: 281 SFEILREIGVSGKPI-----------------LVTLNKIDKI----NGDLYKKLDLVEKL 319
Query: 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112
F VI SAL N+ L + I +
Sbjct: 320 SKELYSPIFDVIPISALKRT----------NLELLRDKIYQLAT 353
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 49.4 bits (119), Expect = 4e-06
Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 21/121 (17%)
Query: 118 ITFLDTPG---------HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
++DTPG + + ++V+ VV P + +
Sbjct: 58 AIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW-TPDDEMVLNKLREGK 116
Query: 169 VPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF---ISISAKTGVGINKLLEN 225
P+I+A+NK+D + ++ + + + F + ISA+TG+ ++ +
Sbjct: 117 APVILAVNKVDNVQ------EKADLLPHL--QFLASQMNFLDIVPISAETGLNVDTIAAI 168
Query: 226 I 226
+
Sbjct: 169 V 169
Score = 47.4 bits (114), Expect = 2e-05
Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 52/193 (26%)
Query: 934 GKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINII- 990
GK+TL++ LL Q S T RK Q RI+ GI + I
Sbjct: 20 GKSTLLNKLLGQKISITSRKAQTTRHRIV---------GI----------HTEGAYQAIY 60
Query: 991 -DTPG-HADFGGE--------VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 1040
DTPG H + + V+ V+ +++ P V K +
Sbjct: 61 VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT-PDDEMVLNKLREGKAPV 119
Query: 1041 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGN 1099
I+ VNK+D + + L L Q++F ++ SA G N
Sbjct: 120 ILAVNKVDNVQEKAD--------LLPHLQFLASQMNFLDIVPISAETGL----------N 161
Query: 1100 MIPLFEAILKYVP 1112
+ + + K++P
Sbjct: 162 VDTIAAIVRKHLP 174
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 48.1 bits (115), Expect = 4e-06
Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 42/157 (26%)
Query: 101 GITQHIGAYNVVTNHGSI---TFLDTPG-----------HEAFTAM-------RARGAKV 139
G+T+ I +D PG E A+ V
Sbjct: 33 GVTRKI-------IEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDV 85
Query: 140 TDIVVLV----------VAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
V++V G +P E + +P IVA+NK+DK+ N+ +
Sbjct: 86 --AVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK-NVQEVI 142
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ ++E+ FI ISAK G I +L I
Sbjct: 143 -NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 178
Score = 41.9 bits (99), Expect = 5e-04
Identities = 31/159 (19%), Positives = 51/159 (32%), Gaps = 40/159 (25%)
Query: 980 IEYNGTRINIIDTPG-----------HADFGGEVERILS----MVDNVLLLIDAVEGPMP 1024
IE IID PG E+ + +D +L++D P
Sbjct: 39 IEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEI 98
Query: 1025 QTRFVTRKALKL-----------GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073
R+ R + + IV VNK+D+ + V++ L +K
Sbjct: 99 IKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK-NVQEVINF---LAEKFEVPLS 154
Query: 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112
++D I SA G N+ L I + +
Sbjct: 155 EIDKVFIPISAKFGD----------NIERLKNRIFEVIR 183
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 48.2 bits (115), Expect = 5e-06
Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 32/180 (17%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQ----------HIGAYNVVTNHG---S 117
IV G GKT+ L +I + ++ ++ G
Sbjct: 17 IV-YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTR 75
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIA---------HAKISG 168
PG + A R + D +V V + + E++ +
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD 135
Query: 169 VPLIVAINKIDKLD-INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
VP+++ +NK D D + ++ ++ + + G P + A G G+ + L+ +S
Sbjct: 136 VPIVIQVNKRDLPDALPVEMVRAVV--------DPEGKFPVLEAVATEGKGVFETLKEVS 187
Score = 37.0 bits (86), Expect = 0.022
Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 31/168 (18%)
Query: 934 GKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIF-----SKNCSIEYNGTRIN 988
GKTT + + ++ R + + E T+F ++ TR +
Sbjct: 26 GKTTNLKWI--------YSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFH 77
Query: 989 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTR--------FVTRKALKLGFKP 1040
+ PG + + IL VD ++ + D+ + + L L P
Sbjct: 78 LYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP 137
Query: 1041 IVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
IV+ VNK D +A P +V A D FPV+ A G
Sbjct: 138 IVIQVNKRDLPDALPVEMVRAVVDPEG---------KFPVLEAVATEG 176
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 48.5 bits (115), Expect = 1e-05
Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 32/234 (13%)
Query: 64 ESLVRAPI-VTIMGHVDHGKTSLLDYIRKTNVVFSEAG-----GITQHIGAYNVVTNHGS 117
+ + + + V + G GK+S ++ +R A +T Y N +
Sbjct: 63 KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPN 121
Query: 118 ITFLDTPGHEAFTA---MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ F D PG + K + ++ + + +
Sbjct: 122 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFV 181
Query: 175 INKIDKLDINLDRIKQDLISEQVIPEE-----------YGGASP---FISISAKTGVGIN 220
K+D N + ++ + ++ G A P +S
Sbjct: 182 RTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFP 241
Query: 221 KLLENI-----SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTL 269
L++ + + + P T + +IE + K + + +
Sbjct: 242 VLMDKLISDLPIYKRHNFMVSLPNITDS---VIEKKRQFLKQRIWLEGFAADLV 292
Score = 47.0 bits (111), Expect = 4e-05
Identities = 39/265 (14%), Positives = 76/265 (28%), Gaps = 39/265 (14%)
Query: 934 GKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTP 993
GK++ I+ L N+ A E+ ER N + D P
Sbjct: 81 GKSSFINTLRG-----IGNEEEGAAKTGVVEVTMERHPYKHP-------NIPNVVFWDLP 128
Query: 994 GHADFGGEVERILSMVDN---VLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS 1050
G + L + +I + + + + + V K+D
Sbjct: 129 GIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSD 188
Query: 1051 NARPEWVVDATFDLFDKLCAT---------EEQLDFPVIYTSALHGYANENSKARQGNMI 1101
TFD L E + P I+ + +K
Sbjct: 189 ITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS--------NKNVCHYDF 240
Query: 1102 P-LFEAILKYVPVHKDNSNNPLQLQIISLE-----YSSYLGKIGIGRILSGRIKSLQDVV 1155
P L + ++ +P++K N + L I+ +I + + + + +
Sbjct: 241 PVLMDKLISDLPIYK-RHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLT 299
Query: 1156 IMNGPDDKPNKAKINQIRVFKGLDR 1180
+ D + K + R G+D
Sbjct: 300 FLLDSDLETLKKSMKFYRTVFGVDE 324
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding, nucleotide-
binding, potassium; HET: GDP FON; 2.95A {Chlorobium
tepidum} PDB: 3gei_A*
Length = 476
Score = 47.9 bits (115), Expect = 2e-05
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 21/119 (17%)
Query: 979 SIEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVT 1030
++ T + DT G + G E+E ++ D +L L+D +
Sbjct: 275 CFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEI 334
Query: 1031 RKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
R+ K + V NK+DR+ + + VI SAL+G
Sbjct: 335 RELKAAHPAAKFLTVANKLDRAANADALIRAI-----------ADGTGTEVIGISALNG 382
Score = 47.9 bits (115), Expect = 2e-05
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 141 DIVVLVVAADDGVMPQTREAIAH--AKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI 198
D+++ ++ + I A + NK+D N D + + +
Sbjct: 314 DLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLD-RAANADALIRAI------ 366
Query: 199 PEEYGGASPFISISAKTGVGINKLLENI 226
G + I ISA G GI+ L +++
Sbjct: 367 --ADGTGTEVIGISALNGDGIDTLKQHM 392
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 47.1 bits (113), Expect = 3e-05
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
D+V+L + A G +E ++ PLI+ +NKID L+ +Q+I
Sbjct: 305 DLVLLTIDAATGWTTGDQEIYE--QVKHRPLILVMNKID------------LVEKQLITS 350
Query: 201 --EYGGASPFISISAKTGVGINKLLENI 226
+ + +A GI+ L I
Sbjct: 351 LEYPENITQIVHTAAAQKQGIDSLETAI 378
Score = 41.3 bits (98), Expect = 0.002
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 22/117 (18%)
Query: 979 SIEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVT 1030
+ G + ++DT G + +VE+I + D VLL IDA G + +
Sbjct: 266 QLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEI- 324
Query: 1031 RKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
+ +K I+V+NKID + ++ + +++T+A
Sbjct: 325 YEQVK-HRPLILVMNKIDLVEKQLITSLEYPEN------------ITQIVHTAAAQK 368
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 44.0 bits (104), Expect = 1e-04
Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 23/175 (13%)
Query: 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG---- 125
+ + G + GK+S ++ + + NV T+++ + +DTPG
Sbjct: 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89
Query: 126 -HE--------AFTAMRARGAKVTDIVVLVV--AADDGVMPQTREAIAHA---KISGVPL 171
E TA+ + +++ ++ + G+ + + + ++ S +
Sbjct: 90 AFENRNTIEMTTITALA----HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSI 145
Query: 172 IVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
++ NKIDK +++ I L+ +Q I + F S S TGVG+ +
Sbjct: 146 VIGFNKIDKCNMDSLSIDNKLLIKQ-ILDNVKNPIKFSSFSTLTGVGVEQAKITA 199
Score = 38.6 bits (90), Expect = 0.009
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 17/122 (13%)
Query: 980 IEYNGTRINIIDTPG---HADFG-GEVERI----LSMVDNVLL-LIDAVE--GPMPQTRF 1028
++ + IIDTPG A +E L+ ++ V+L +ID E G + +
Sbjct: 71 FDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQI 130
Query: 1029 VTRKALKLGF--KP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSAL 1085
++K F K ++ NKID + L K + S L
Sbjct: 131 NLFYSIKSVFSNKSIVIGFNKID---KCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTL 187
Query: 1086 HG 1087
G
Sbjct: 188 TG 189
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 42.9 bits (101), Expect = 2e-04
Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 18/161 (11%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGIT---QHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGA 137
GKT LL + N F E T + + V + DT G E + +R
Sbjct: 30 GKTCLL--MSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87
Query: 138 KVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDL 192
+TD+ ++ + V + + VP ++ +ID D + +
Sbjct: 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDDPKTLARLND 146
Query: 193 ISEQVIPEEYG-------GASPFISISAKTGVGINKLLENI 226
+ E+ I E G GA ++ SA T G+ + +
Sbjct: 147 MKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane
protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Length = 550
Score = 43.6 bits (102), Expect = 5e-04
Identities = 41/211 (19%), Positives = 62/211 (29%), Gaps = 45/211 (21%)
Query: 934 GKTTLIDHLLRQ--------------------SGTFRKNQNINARIMDSN---EIEKERG 970
GKT+ I +LL Q G NA ++D G
Sbjct: 77 GKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFG 136
Query: 971 ITIFSKNCSIEYNGTR---INIIDTPGH-----------ADFGGEVERILSMVDNVLLLI 1016
T ++ + I+IIDTPG DF + VD ++LL
Sbjct: 137 NTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLF 196
Query: 1017 DAVEGPMPQ-TRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075
DA + + K VV+NK D + ++ L L
Sbjct: 197 DAHKLEISDEFSEAIGALRGHEDKIRVVLNKADM--VETQQLMRVYGALMWALGKVVGTP 254
Query: 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEA 1106
+ +Y + R+ LFE
Sbjct: 255 EVLRVYIGSFWSQPLLVPDNRR-----LFEL 280
Score = 29.8 bits (66), Expect = 7.6
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 117 SITFLDTPGHEA-----------FTAMRARGAKVTDIVVLVVAADDGVMPQ-TREAIAHA 164
SI+ +DTPG + F A+ A+ D+++L+ A + EAI
Sbjct: 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL 214
Query: 165 KISGVPLIVAINKIDKLD 182
+ + V +NK D ++
Sbjct: 215 RGHEDKIRVVLNKADMVE 232
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 41.6 bits (98), Expect = 7e-04
Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 18/160 (11%)
Query: 81 GKTSLLDYIRKTNVVFSEA---GGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGA 137
GKTSL+ + T + +V + DT G + F +R
Sbjct: 32 GKTSLV--VSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCY 89
Query: 138 KVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDL 192
TDI +L + V + I P+I+ + D + I+ D
Sbjct: 90 TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIILVGTQSDLREDVKVLIELDK 148
Query: 193 ISEQVIPEEYG-------GASPFISISAKTGVGINKLLEN 225
E+ +PEE A+ +I SA T + ++ +
Sbjct: 149 CKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 41.5 bits (98), Expect = 7e-04
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 15/108 (13%)
Query: 143 VVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL-----DINLDRIKQDLISEQV 197
+V+++ + ++ I A S + ++V + K DKL L+ +++ +
Sbjct: 112 LVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV----- 166
Query: 198 IPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKG 245
+ G + S+ G++KL + + PV G
Sbjct: 167 --LAFNGDVQVETFSSLKKQGVDKLRQKL---DTWFSEMQPVEETQDG 209
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 42.3 bits (99), Expect = 9e-04
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
+ F + K +VV +V D + H + +++ NK D + ++
Sbjct: 57 DDFLRILNGIGKSDALVVKIV--DIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVK 114
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
K + ISA G GI +L + I
Sbjct: 115 HDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAI 154
Score = 32.6 bits (74), Expect = 1.1
Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 20/117 (17%)
Query: 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKID--RSNAR 1053
DF + I V+ ++D + + R +G ++V NK D + +
Sbjct: 58 DFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHR---FVGNNKVLLVGNKADLIPKSVK 114
Query: 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110
+ V V SA G L +AI Y
Sbjct: 115 HDKVK----HWMRYSAKQLGLKPEDVFLISAAKGQGIAE----------LADAIEYY 157
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 41.3 bits (97), Expect = 0.001
Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 30/135 (22%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEAFTAMRAR---- 135
GKTSLL T + + G +T +D PGH + R
Sbjct: 60 GKTSLL-----TLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHV-----KLRYKLS 109
Query: 136 -----GAKVTDIVVLVV--AADDGVMPQTRE-------AIAHAKISGVPLIVAINKIDKL 181
AK ++ +V D + T E + +G+ +++A NK +
Sbjct: 110 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169
Query: 182 D-INLDRIKQDLISE 195
+IK L SE
Sbjct: 170 TARPPSKIKDALESE 184
Score = 28.9 bits (65), Expect = 8.2
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 979 SIEYNGTRINIIDTPGH----ADFGGEVERILSMVDNVLLLIDAVEGP--MPQTR----- 1027
+ +Y+G+ + ++D PGH ++ V ++ ++D+ P + T
Sbjct: 85 AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 144
Query: 1028 -FVTRKALKLGFKPIVVV-NKIDRSNARPE 1055
++ I++ NK + ARP
Sbjct: 145 ILSITESSCENGIDILIACNKSELFTARPP 174
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 40.5 bits (96), Expect = 0.001
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 12/87 (13%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
++V+ V + E + + G P+I+ K+D E +
Sbjct: 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK-----------HELYLGP 129
Query: 201 EYG-GASPFISISAKTGVGINKLLENI 226
YG G I S++ G+ +LLE I
Sbjct: 130 LYGLGFGDPIPTSSEHARGLEELLEAI 156
Score = 37.9 bits (89), Expect = 0.007
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 981 EYNGTRINIIDTPGHAD---FGGE----VERILSMVDNVLLLIDAVEGPMPQTRFVTRKA 1033
E + R ++DT G + + V+R L + VL +D V
Sbjct: 45 ETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYL 104
Query: 1034 LKLGFKP-IVVVNKIDRSNARPE 1055
+ G KP I+V K+D
Sbjct: 105 RRKG-KPVILVATKVDDPKHELY 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 41.3 bits (97), Expect = 0.001
Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 30/135 (22%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEAFTAMRAR---- 135
GKTSLL T + + G +T +D PGH + R
Sbjct: 24 GKTSLL-----TLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHV-----KLRYKLS 73
Query: 136 -----GAKVTDIVVLVV--AADDGVMPQTRE-------AIAHAKISGVPLIVAINKIDKL 181
AK ++ +V D + T E + +G+ +++A NK +
Sbjct: 74 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133
Query: 182 D-INLDRIKQDLISE 195
+IK L SE
Sbjct: 134 TARPPSKIKDALESE 148
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 40.5 bits (95), Expect = 0.001
Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 14/158 (8%)
Query: 81 GKTSLL-DYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKV 139
GKT LL Y + V ++ DT G E + +R
Sbjct: 17 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ 76
Query: 140 TDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLIS 194
TD+ ++ + + V + + H P+I+ K+D D K
Sbjct: 77 TDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKK 135
Query: 195 EQVIPEEYG-------GASPFISISAKTGVGINKLLEN 225
I G GA ++ SA T G+ + +
Sbjct: 136 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 39.9 bits (93), Expect = 0.005
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD--IN 184
+ F +M R + +VV +V D + + P+++ NK D L +
Sbjct: 59 DDFLSMLHRIGESKALVVNIVDIFD--FNGSFIPGLPRFAADNPILLVGNKADLLPRSVK 116
Query: 185 LDRIKQ---DLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
++ + + E + +SA G+G+ K++E I
Sbjct: 117 YPKLLRWMRRMAEELGLC-----PVDVCLVSAAKGIGMAKVMEAI 156
Score = 34.2 bits (78), Expect = 0.37
Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 27/139 (19%)
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
C + + + DF + RI V+ ++D + +
Sbjct: 42 CFRLKHYNEVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFD--FNGSFIPGLPRFAAD 98
Query: 1038 FKPIVVVNKID------RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANE 1091
++V NK D + W+ ++ V SA G
Sbjct: 99 NPILLVGNKADLLPRSVKYPKLLRWM--------RRMAEELGLCPVDVCLVSAAKGI--- 147
Query: 1092 NSKARQGNMIPLFEAILKY 1110
M + EAI +Y
Sbjct: 148 -------GMAKVMEAINRY 159
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 39.2 bits (92), Expect = 0.005
Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 26/185 (14%)
Query: 81 GKTSLLDYI--RKTNVVFSEAGGITQHIGAYNVVTNHGSITFL-DTPGH---EAFTAMRA 134
GK++ ++ + +K S+ G TQHI ++V + L D PG+ E A +A
Sbjct: 41 GKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKA 100
Query: 135 RGAKVTD----------IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL--- 181
++ ++L++ A + R I +G P+ + K DKL
Sbjct: 101 HWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQ 160
Query: 182 --DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPV 239
L ++ L + Y G SA G++ I L A
Sbjct: 161 ESINALRATQKSL--DAYRDAGYAGKLTVQLFSALKRTGLDDAHALI---ESWLRPAAAD 215
Query: 240 TTPAK 244
A
Sbjct: 216 EDHAA 220
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 39.4 bits (93), Expect = 0.007
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 141 DIVVLVVAADDGVMPQTRE-----AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISE 195
D V+LVV P+T + A+ + + ++ INK+D D + DL
Sbjct: 86 DQVILVVTVKM---PETSTYIIDKFLVLAEKNELETVMVINKMDLYD------EDDLRKV 136
Query: 196 QVIPEEYGGASPFISISAKTGVGINKLLE 224
+ + E Y G P + SAKTG+GI +L E
Sbjct: 137 RELEEIYSGLYPIVKTSAKTGMGIEELKE 165
Score = 33.7 bits (78), Expect = 0.39
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 1009 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065
VD V+L++ P T + + A K + ++V+NK+D + +
Sbjct: 85 VDQVILVVTVKM-PETSTYIIDKFLVLAEKNELETVMVINKMDLYD-------EDDLRKV 136
Query: 1066 DKLCATEEQLDFPVIYTSALHG 1087
+L L +P++ TSA G
Sbjct: 137 RELEEIYSGL-YPIVKTSAKTG 157
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 38.4 bits (90), Expect = 0.008
Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 27/150 (18%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAK--ISGVPLIVA 174
DT G F AM+ +LV + + + I K + +P+++
Sbjct: 61 TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120
Query: 175 INKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINKLLENISL 228
NK D+ +++ + A F+ SAK + +L + L
Sbjct: 121 GNKCDE-------------TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ--EL 165
Query: 229 QAEILELKAPVTTPAKGVIIESRLDKGKGP 258
+ K + R D+ KG
Sbjct: 166 LTLETRRNMSLNIDGKRSGKQKRTDRVKGK 195
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 38.7 bits (90), Expect = 0.008
Identities = 30/181 (16%), Positives = 54/181 (29%), Gaps = 19/181 (10%)
Query: 81 GKTSLL-DYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKV 139
GKT++L + + ++ DT G + +R
Sbjct: 39 GKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 98
Query: 140 TDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLIS 194
+D V+L D + + R I +++ K D ++
Sbjct: 99 SDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQK 157
Query: 195 EQVIPEEYG-------GASPFISISAKTG-VGINKLLENISLQAEILELKAPVTTPAKGV 246
+ I E G GA ++ SA T I+ + S+ L P P K
Sbjct: 158 QAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC----LNKPSPLPQKSP 213
Query: 247 I 247
+
Sbjct: 214 V 214
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 37.9 bits (89), Expect = 0.008
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 17/69 (24%)
Query: 168 GVPLIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222
G L++A+NK+D ++I++D++++ L G + +SA +GI +L
Sbjct: 108 GANLLLALNKMDLAKSLGIEIDVDKLEKIL-----------GV-KVVPLSAAKKMGIEEL 155
Query: 223 LENISLQAE 231
+ IS+ +
Sbjct: 156 KKAISIAVK 164
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 38.8 bits (91), Expect = 0.010
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 168 GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
G+P+ +A+N ID LD +I D +S + G P ++ SA G++++++ +
Sbjct: 107 GIPVTIALNMIDVLDGQGKKINVDKLSYHL------GV-PVVATSALKQTGVDQVVKKAA 159
Query: 228 LQAEILELKAPVTTPAKGVIIESRLDK 254
+ P +E+ + +
Sbjct: 160 HTTT--STVGDLAFPIYDDRLEAAISQ 184
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 38.1 bits (89), Expect = 0.010
Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 26/157 (16%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHI----GAYNVVTNHG----SITFLDTPGHEAFTAM 132
GKT +L + ++ T +I ++ ++ DT G E ++ +
Sbjct: 21 GKTCML-------ICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL 73
Query: 133 RARGAKVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKID-KLDINLD 186
R + DI VL + + V+ + + VP+++ K+D + D
Sbjct: 74 RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYL 132
Query: 187 RIKQDLISE---QVIPEEYGGASPFISISAKTGVGIN 220
++I+ + + ++ G A+ +I S+KT +
Sbjct: 133 ADHTNVITSTQGEELRKQIG-AAAYIECSSKTQQNVK 168
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding domain;
1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Length = 307
Score = 38.7 bits (91), Expect = 0.012
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 1009 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065
VD +L+ AV+ P T + R +PI+ + K+D T D
Sbjct: 87 VDQAVLVFSAVQ-PSFSTALLDRFLVLVEANDIQPIICITKMDLIED------QDTEDTI 139
Query: 1066 DKLCATEEQLDFPVIYTSALHG 1087
+ + V TS+
Sbjct: 140 QAYAEDYRNIGYDVYLTSSKDQ 161
Score = 37.2 bits (87), Expect = 0.031
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 141 DIVVLVVAADDGVMPQTRE-----AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISE 195
D VLV +A V P + + + + I+ I K+D ++ D+ +D I
Sbjct: 88 DQAVLVFSA---VQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE---DQDTEDTIQA 141
Query: 196 QVIPEEYGGAS-PFISISAKTGVGINKLLENIS 227
E+Y S+K + ++ +
Sbjct: 142 YA--EDYRNIGYDVYLTSSKDQDSLADIIPHFQ 172
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 37.4 bits (87), Expect = 0.017
Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 37/201 (18%)
Query: 49 PESFLLNEYNKNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHI-- 106
S ++ +N+ +S++R +V + G GKT LL +VFS+ ++
Sbjct: 6 HHSSGVDLGTENLYFQSMIRKKLVVV-GDGACGKTCLL-------IVFSKDEFPEVYVPT 57
Query: 107 --GAYNVVTNHG----SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV------- 153
Y + DT G E + +R TD++++ + D
Sbjct: 58 VFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPE 117
Query: 154 --MPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYG-------G 204
+P+ + VP+I+ NK D R + + ++ + + G
Sbjct: 118 KWVPEVKH---FCP--NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172
Query: 205 ASPFISISAKTGVGINKLLEN 225
A ++ SAKT G+ ++ E
Sbjct: 173 AYDYLECSAKTKEGVREVFET 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 38.3 bits (90), Expect = 0.019
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 13/66 (19%)
Query: 170 PLIVAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228
P +VA+NK+D L+ + + L E + + +SA TG G+ L E +
Sbjct: 271 PSLVALNKVDLLEEEAVKALADALAREGL---------AVLPVSALTGAGLPALKEAL-- 319
Query: 229 QAEILE 234
++
Sbjct: 320 -HALVR 324
Score = 30.2 bits (69), Expect = 5.2
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Query: 1035 KLGFKP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
L +P +V +NK+D +++ + L + V+ SAL G
Sbjct: 266 ALLRRPSLVALNKVD--------LLEE--EAVKALADALAREGLAVLPVSALTG 309
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 36.8 bits (86), Expect = 0.021
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 168 GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
G L++A+NK+D I D + + + G + +SA +GI +L + IS
Sbjct: 112 GANLLLALNKMDLAKSLGIEIDVDKLEKIL------GV-KVVPLSAAKKMGIEELKKAIS 164
Query: 228 LQAE 231
+ +
Sbjct: 165 IAVK 168
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 37.3 bits (87), Expect = 0.024
Identities = 39/182 (21%), Positives = 64/182 (35%), Gaps = 29/182 (15%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGA----YNVVTNHGSITFL--DTPGHEAFTAMRA 134
GKT+ + R F + T +G TN G I F DT G E F +R
Sbjct: 27 GKTTFV--KRHLTGEFEKKYVAT--LGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD 82
Query: 135 ---RGAKVTDIVVLVVAAD--DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
A+ I+ V + V R+ + +P+++ NK+D D ++K
Sbjct: 83 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD---RKVK 137
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINK----LLENISLQAEILELKAPVTTPAKG 245
V + + ISAK+ K L + + + P P +
Sbjct: 138 AK---SIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 192
Query: 246 VI 247
V+
Sbjct: 193 VM 194
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 37.6 bits (88), Expect = 0.024
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 1009 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065
+D ++++ A+ P + R L +P++V+NKID + D D
Sbjct: 131 IDQIVIVS-AIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD-------DEGMDFV 181
Query: 1066 DKLCATEEQLDFPVIYTSALHG 1087
++ + + V+ S+
Sbjct: 182 NEQMDIYRNIGYRVLMVSSHTQ 203
Score = 36.5 bits (85), Expect = 0.061
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 141 DIVVLVVAADDGVMPQTRE-----AIAHAKISGVPLIVAINKIDKLD-INLDRIKQDLIS 194
D +V+V A P+ + + V ++ +NKID LD +D + + +
Sbjct: 132 DQIVIVSAIL----PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQM-- 185
Query: 195 EQVIPEEYGGAS-PFISISAKTGVGINKLLE 224
+ Y + +S+ T G+ L E
Sbjct: 186 -----DIYRNIGYRVLMVSSHTQDGLKPLEE 211
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 36.8 bits (86), Expect = 0.025
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 26/136 (19%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAKIS-GVPLIVAI 175
LDT G E ++AMR + + + + V A ++ + RE I K S VP+++
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINKLLENISLQ 229
NK D + + + + PFI SAKT G++ +L
Sbjct: 117 NKCD-------------LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY--TLV 161
Query: 230 AEILELKAPVTTPAKG 245
EI + K ++ K
Sbjct: 162 REIRKHKEKMSKDGKK 177
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 36.8 bits (86), Expect = 0.026
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 143 VVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL-----DINLDRIKQDLISEQV 197
V L+V + K +P + + K+DK+ L+ ++
Sbjct: 108 VFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVF----- 162
Query: 198 IPEEYGGASPFISISAKTGVGINKLLENISLQAEILE 234
G I S+ TG GI++LL+ I + +L+
Sbjct: 163 ---SKYGEYTIIPTSSVTGEGISELLDLI---STLLK 193
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 36.8 bits (86), Expect = 0.028
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 158 REAIAHAKISGVPLIVAINKIDKL-----DINLDRIKQDLISEQVIPEEYGGASPFISIS 212
+ K G+P+IV K DK+ D + ++Q L I S
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL--------NIDPEDELILFS 175
Query: 213 AKTGVGINKLLENI 226
++T G ++ I
Sbjct: 176 SETKKGKDEAWGAI 189
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 37.6 bits (88), Expect = 0.028
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 15/67 (22%)
Query: 170 PLIVAINKIDKLDI--NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
P I+ NK+D + NL+ K E+ P ISA T G+ +LL +
Sbjct: 276 PQIIVANKMDMPEAAENLEAFK----------EKLTDDYPVFPISAVTREGLRELLFEV- 324
Query: 228 LQAEILE 234
A LE
Sbjct: 325 --ANQLE 329
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 37.2 bits (87), Expect = 0.031
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 1009 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065
VD V+++ ++ P + +P++V NKID N +
Sbjct: 80 VDRVIIVE-TLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN-------EEEKKEL 131
Query: 1066 DKLCATEEQLDFPVIYTSALHG 1087
++ + + V+ SA G
Sbjct: 132 ERWISIYRDAGYDVLKVSAKTG 153
Score = 36.0 bits (84), Expect = 0.068
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 141 DIVVLVVAADDGVMPQTREA-----IAHAKISGVPLIVAINKIDKLDINLDRIKQDLISE 195
D V++V P+ + + V ++ NKID L+ +++
Sbjct: 81 DRVIIVETLKM---PEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN------EEEKKEL 131
Query: 196 QVIPEEYGGAS-PFISISAKTGVGINKLLE 224
+ Y A + +SAKTG GI++L++
Sbjct: 132 ERWISIYRDAGYDVLKVSAKTGEGIDELVD 161
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Length = 262
Score = 37.1 bits (86), Expect = 0.033
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 979 SIEYNGTRINIIDTPG-------HADFGGEVERILSM--VDNVLLLIDAVEGPM-PQTRF 1028
S G INIIDTPG + ++ L +D +L + + +
Sbjct: 78 SRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQ 137
Query: 1029 VTRKALKL-----GFKPIVVVNKID 1048
V + K ++V+
Sbjct: 138 VVIAITQTFGKEIWCKTLLVLTHAQ 162
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 36.9 bits (86), Expect = 0.033
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 168 GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
+I+A+ ID+ +I + + + + G P + S+ TG G+ +L E I
Sbjct: 110 EKKVILAMTAIDEAKKTGMKIDRYELQKHL------GI-PVVFTSSVTGEGLEELKEKIV 162
Query: 228 LQAE 231
A+
Sbjct: 163 EYAQ 166
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 36.4 bits (85), Expect = 0.035
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 24/112 (21%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAKIS-GVPLIVAI 175
LDT G E ++AMR + + + + V A ++ + RE I K S VP+++
Sbjct: 74 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINK 221
NK D + + + + PFI SAKT G+
Sbjct: 134 NKCD-------------LPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVED 172
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 36.3 bits (84), Expect = 0.040
Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 28/165 (16%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHI----GAYNVVTNHGSITFL----DTPGHEAFTAM 132
GKT LL + ++ ++I Y+ DT G E + +
Sbjct: 42 GKTCLL-------ISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL 94
Query: 133 RARGAKVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
R TD+ ++ + + V + + H P+I+ K+D D
Sbjct: 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTI 153
Query: 188 IKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLEN 225
K I G GA ++ SA T G+ + +
Sbjct: 154 EKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 36.5 bits (85), Expect = 0.042
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 168 GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
G P++VA+N +D + I + + + G I I A +GI L +++
Sbjct: 110 GKPVVVALNMMDIAEHRGISIDTEKLESLL------GC-SVIPIQAHKNIGIPALQQSLL 162
Query: 228 LQAE 231
++
Sbjct: 163 HCSQ 166
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 35.9 bits (83), Expect = 0.053
Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 36/177 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHI-------GAYNVVTNHG-SITFLDT 123
+ I+G GKT LL +VFS+ ++ A V + DT
Sbjct: 28 LVIVGDGACGKTCLL-------IVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 80
Query: 124 PGHEAFTAMRARGAKVTDIVVLVVAADDGV---------MPQTREAIAHAKISGVPLIVA 174
G E + +R TD++++ + D P+ + VP+I+
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH---FCP--NVPIILV 135
Query: 175 INKIDKLDINLDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLE 224
NK D R + + ++ + E G A ++ SAKT G+ ++ E
Sbjct: 136 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 36.2 bits (84), Expect = 0.064
Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 57/181 (31%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT----------NHGSITFLDTPGH---E 127
GKT+L F++ G Q +G + VT +T +D PG
Sbjct: 15 GKTTL----------FNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 128 AFTAMRARGAKVT---------DIVVLVVAADDG--------VMPQTREAIAHAKISGVP 170
++ + ++ D+++ VV D + Q E G+P
Sbjct: 65 TISSQTSLDEQIACHYILSGDADLLINVV---DASNLERNLYLTLQLLEL-------GIP 114
Query: 171 LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230
IVA+N +D + RI+ D +S ++ G P I + + G GI L I
Sbjct: 115 CIVALNMLDIAEKQNIRIEIDALSARL------GC-PVIPLVSTRGRGIEALKLAIDRYK 167
Query: 231 E 231
Sbjct: 168 A 168
Score = 33.5 bits (77), Expect = 0.42
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 31/134 (23%)
Query: 970 GITIFSKNCSIEYNGTRINIIDTPG------HADFGGEVERIL------SMVDNVLLLID 1017
G+T+ K ++ ++D PG + E+I D ++ ++D
Sbjct: 35 GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVD 94
Query: 1018 A--VEGPMPQTR--FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073
A +E R ++T + L+LG IV +N +D + + + ++ D L
Sbjct: 95 ASNLE------RNLYLTLQLLELGIPCIVALNMLDIAEKQ-----NIRIEI-DAL---SA 139
Query: 1074 QLDFPVIYTSALHG 1087
+L PVI + G
Sbjct: 140 RLGCPVIPLVSTRG 153
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 35.5 bits (82), Expect = 0.085
Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 36/178 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHI----GAYNVVTNHG----SITFLDT 123
V ++G GKTSLL +VF++ + Y V + DT
Sbjct: 37 VVLVGDGGCGKTSLL-------MVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDT 89
Query: 124 PGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIA---------HAKISGVPLIVA 174
G + + +R +++L P + + I K VP+IV
Sbjct: 90 AGQDDYDRLRPLFYPDASVLLLCFDVTS---PNSFDNIFNRWYPEVNHFCK--KVPIIVV 144
Query: 175 INKIDKLDINLDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLEN 225
K D K + + G GA ++ SA+ ++ + +
Sbjct: 145 GCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 34.8 bits (81), Expect = 0.090
Identities = 16/128 (12%), Positives = 40/128 (31%), Gaps = 29/128 (22%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAK-ISGVPLIVAI 175
D G D VV V + +D + + + S VP+++
Sbjct: 72 RDEGGPPELQFAAW-----VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG 126
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLENISL 228
+ + R VI + + A G+ + ++ ++++
Sbjct: 127 TQDA-ISAANPR---------VIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA- 175
Query: 229 QAEILELK 236
+++ L+
Sbjct: 176 -QKVVALR 182
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 34.9 bits (81), Expect = 0.093
Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 18/151 (11%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFL--DTPGHEAFTAMRARGA 137
GKT+LL ++ K + + G+I F D GH +
Sbjct: 35 GKTTLL-HMLKND----RLATLQPTWH-PTSEELAIGNIKFTTFDLGGHIQARRLWKDYF 88
Query: 138 KVTDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD-INLDRIKQD 191
+ +V +V AAD + R A++ VP ++ NKID + ++ ++
Sbjct: 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSA 148
Query: 192 LISEQVIPEEYGGASPFISI---SAKTGVGI 219
L + + + S G
Sbjct: 149 LGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 179
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 35.0 bits (81), Expect = 0.094
Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 30/164 (18%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHI-------GAYNVVTNHG-SITFLDTPGHEAFTAM 132
GKT LL + ++ T ++ A VV ++ DT G E + +
Sbjct: 20 GKTCLL-------ISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL 72
Query: 133 RARGAKVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
R + D+ +L + + V + + H GVP+++ K+D D
Sbjct: 73 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFF 131
Query: 188 IKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLE 224
I I G GA +I S+K+ + + +
Sbjct: 132 IDHP--GAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFD 173
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 34.3 bits (77), Expect = 0.095
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 16/108 (14%)
Query: 1431 RLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGS------DEAIQLISPIK 1484
R+ H L+YE I+ I + + + +K + +++ E + I
Sbjct: 15 RVLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEII 74
Query: 1485 ITLEYAI----------EFINDDELVEITPKNIRLRKRFLKENERKKK 1522
+ I E++ D + +NI ++KR E
Sbjct: 75 NGKSFFIHYQGWKSSWDEWVGYDRIRAYNEENIAMKKRLANEAGSTGS 122
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 34.8 bits (81), Expect = 0.11
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 24/114 (21%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAK--ISGVPLIVA 174
DT G F AM+ +LV + + E I K + +P+++
Sbjct: 56 TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLV 115
Query: 175 INKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINKL 222
NK D + + A F+ SAK + +L
Sbjct: 116 GNKC------------DESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKEL 157
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 35.5 bits (82), Expect = 0.13
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 137 AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK--LDINLDRIKQDLIS 194
A +TD ++++ G Q I + ++A+NK D + + +
Sbjct: 166 ADLTDFFLVLMLPGAGDELQG----IKKGIFELADMIAVNKADDGDGERRASAAASEYRA 221
Query: 195 --EQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ P P ++IS G G++ L I
Sbjct: 222 ALHILTPPSATWTPPVVTISGLHGKGLDSLWSRI 255
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 34.5 bits (80), Expect = 0.14
Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 25/147 (17%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAKIS-GVPLIVAI 175
LDT G E + A+R + + + V + + RE I K VP ++
Sbjct: 67 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINKLLENISLQ 229
NK DL ++ + E ++ SAKT ++K+ ++
Sbjct: 127 NKS------------DLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM-- 172
Query: 230 AEILELKAPVTTPAKGVIIESRLDKGK 256
EI K + G L K
Sbjct: 173 REIRARKMEDSKEKNGKKKRKSLAKRI 199
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 34.0 bits (79), Expect = 0.14
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 24/112 (21%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAKIS-GVPLIVAI 175
LDT G E ++AMR + + + + V A ++ + Q RE I K S VP+++
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINK 221
NK D ++ + + P+I SAKT G+
Sbjct: 116 NKSD-------------LAARTVESRQAQDLARSYGIPYIETSAKTRQGVED 154
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 34.2 bits (79), Expect = 0.15
Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 37/162 (22%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFL--DTPGHEAFTAMRARGA 137
GKT++L Y + V + IG +NV T ++ ++ D G +
Sbjct: 30 GKTTIL-YRLQIGEVVT----TKPTIG-FNVETLSYKNLKLNVWDLGGQTSIRPYWRCYY 83
Query: 138 KVTDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD---------- 182
T V+ VV + D M + + ++ L+V NK D+
Sbjct: 84 ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKE 143
Query: 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+NL +K S + SA G GI + L+
Sbjct: 144 LNLVELKDRSWSIV-------------ASSAIKGEGITEGLD 172
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 34.0 bits (79), Expect = 0.15
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 23/112 (20%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAK-ISGVPLIVAI 175
LDT G E F +MR K +LV + + + R+ I K VP+I+
Sbjct: 56 LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINK 221
NK+ DL SE+ + G A PF+ SAK+ +++
Sbjct: 116 NKV------------DLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDE 155
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 34.6 bits (80), Expect = 0.15
Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 23/156 (14%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFL--DTPGHEAFTAMRARGA 137
GKT+LL ++ K + G + +TF D GH +
Sbjct: 37 GKTTLL-HMLKDD----RLGQHVPTLH-PTSEELTIAGMTFTTFDLGGHIQARRVWKNYL 90
Query: 138 KVTDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD-INLDRIKQD 191
+ +V +V AD + +++E + I+ VP+++ NKID+ + I+ +R+++
Sbjct: 91 PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREM 150
Query: 192 LISEQVIPEEYGGASPFI--------SISAKTGVGI 219
+ + + S G
Sbjct: 151 FGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 35.2 bits (81), Expect = 0.17
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 137 AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK-LDINLDRIKQDLIS- 194
A + D+ VL++ G Q I + +VA+ K D L + RI+ + +S
Sbjct: 185 ADMVDMFVLLLPPAGGDELQG----IKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSA 240
Query: 195 -EQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + I ISA++G GI+++ + +
Sbjct: 241 LKLLRKRSQVWKPKVIRISARSGEGISEMWDKM 273
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 34.0 bits (79), Expect = 0.18
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 25/134 (18%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAKIS-GVPLIVAI 175
LDT G E F AMR + + +LV A +D + + I K P+++
Sbjct: 62 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINKLLENISLQ 229
NK DL S++ +P A + SAK + +++ E +
Sbjct: 122 NKA------------DLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV-- 167
Query: 230 AEILELKAPVTTPA 243
+ + + P+
Sbjct: 168 RAVRKYQEQELPPS 181
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 33.6 bits (78), Expect = 0.20
Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 24/113 (21%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAK-ISGVPLIVAI 175
LDT G E FTAMR K LV + + RE I K VP+I+
Sbjct: 56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEE-------YGGASPFISISAKTGVGINK 221
NK D D +R V E+ + F+ SAK+ + +N+
Sbjct: 116 NKCDLED---ER--------VVGKEQGQNLARQWCNC-AFLESSAKSKINVNE 156
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 33.8 bits (78), Expect = 0.23
Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 37/162 (22%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFL--DTPGHEAFTAMRARGA 137
GKT++L +V I+ +G +N+ T H D G ++ +
Sbjct: 30 GKTTILKKFNGEDVD-----TISPTLG-FNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYF 83
Query: 138 KVTDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD---------- 182
+ TD ++ VV +AD M + + +++G L++ NK D
Sbjct: 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEA 143
Query: 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+ LD I+ SA TG + ++
Sbjct: 144 LELDSIRSHHWR-------------IQGCSAVTGEDLLPGID 172
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 33.9 bits (77), Expect = 0.26
Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 24/104 (23%)
Query: 1260 NIGLRVTQNKHDDSIYEVSGRGELHLTILIEN---MRR--EGYELSVSRPR----VIFKT 1310
++G+ + N Y + + + R G ELS ++ + ++
Sbjct: 115 SVGMAIQVN------YSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIA- 167
Query: 1311 LNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNI-EINEK 1353
YEP+EN+ +++ I+ + N + + E+N+K
Sbjct: 168 -----YEPFENIAIELP--PNEILFSENNDMDNNNDGVDELNKK 204
Score = 30.1 bits (67), Expect = 5.1
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 16/67 (23%)
Query: 555 EIIAFDIQN-PIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNY---I 610
E IA ++ I+ T ++ +K Y
Sbjct: 172 ENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAI------------SKLYYVQF 219
Query: 611 RFKLSKK 617
FK +++
Sbjct: 220 FFKQAEQ 226
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.28
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 9/33 (27%)
Query: 219 INKLLENISLQAEILELKAPVTTPAKGV--IIE 249
+ KL + SL+ L A + PA + +E
Sbjct: 22 LKKL-QA-SLK-----LYADDSAPALAIKATME 47
Score = 31.8 bits (71), Expect = 0.82
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 1148 IKSLQDVVIMNGPDDKPNKAKIN 1170
+K LQ + + D P A I
Sbjct: 22 LKKLQASLKLYADDSAPALA-IK 43
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 33.4 bits (77), Expect = 0.33
Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 37/162 (22%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFL--DTPGHEAFTAMRARGA 137
GKTS+L Y V + +G N+ T + +I+F D G
Sbjct: 34 GKTSIL-YRLHLGDVVT----TVPTVG-VNLETLQYKNISFEVWDLGGQTGVRPYWRCYF 87
Query: 138 KVTDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD---------- 182
TD V+ VV + D M + + ++ L++ NK D D
Sbjct: 88 SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQ 147
Query: 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+ + I + + S+KTG G+ + ++
Sbjct: 148 LGVSSIMNRTWT-------------IVKSSSKTGDGLVEGMD 176
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 33.8 bits (77), Expect = 0.36
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE--AGGITQHIGAYNVVTNHGSITFLDTPG 125
+ ++G GK++ + I V S A IT+ + + +DTPG
Sbjct: 32 IVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPG 87
Score = 31.9 bits (72), Expect = 1.5
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLL----IDAVEGPMPQT 1026
IT + S + T + ++DTPG D + +LL A+ +P
Sbjct: 64 ITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLG 123
Query: 1027 RF-----VTRKALKLGFKP------IVVVNKIDRSN 1051
R+ + + F I++ + D
Sbjct: 124 RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 159
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 32.9 bits (76), Expect = 0.36
Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 37/162 (22%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFL--DTPGHEAFTAMRARGA 137
GKT++L Y + V + IG +NV T + ++ F D G +
Sbjct: 19 GKTTIL-YRLQVGEVVT----TIPTIG-FNVETVTYKNLKFQVWDLGGLTSIRPYWRCYY 72
Query: 138 KVTDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD---------- 182
TD V+ VV + D + ++ + ++ L+V NK D
Sbjct: 73 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANS 132
Query: 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+ L +K SA G G+++ +E
Sbjct: 133 LGLPALKDRKWQIF-------------KTSATKGTGLDEAME 161
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 33.3 bits (77), Expect = 0.36
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 28/100 (28%)
Query: 140 TDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD----------IN 184
TDI++ V+ +AD +T + + K+S VP+++ NK D L +N
Sbjct: 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN 143
Query: 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
L I+ + Q S SA TG G+ +
Sbjct: 144 LHTIRDRVWQIQ-------------SCSALTGEGVQDGMN 170
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 32.9 bits (76), Expect = 0.39
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 23/107 (21%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIA-HAKISGVPLIVAI 175
LDT G E F+AMR + + D ++V + D + + + I P+I+
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTG 216
NK+ DL+ + + + G P+I SAK
Sbjct: 131 NKV------------DLMHLRKVTRDQGKEMATKYNIPYIETSAKDP 165
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 33.4 bits (76), Expect = 0.49
Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 28/238 (11%)
Query: 6 SVVIKNLMKLGQ----MVTINQVLDQETAM---ILVEEMGHVAHASKLNDPESFLLNEYN 58
+V + N K G+ + + + DQ+ + I V+ G L+ +
Sbjct: 86 TVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTA 145
Query: 59 KNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSI 118
+NI + V + L+ Y + V ++
Sbjct: 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 205
Query: 119 TFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIA---------HAKISGV 169
DT G E + +R TD+ ++ + P + + H
Sbjct: 206 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS---PASFHHVRAKWYPEVRHHCP--NT 260
Query: 170 PLIVAINKIDKLDINLDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGIN 220
P+I+ K+D D K I G GA ++ SA T G+
Sbjct: 261 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 318
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 33.8 bits (77), Expect = 0.50
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 163 HAKISGVPLIVAINKID---KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
P+IV +NKID +I +I + + + F IS K G G+
Sbjct: 145 EKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIEN---------RFHRISCKNGDGV 195
Query: 220 NKLLENISLQAEILELKAPVTTPAKGVIIESRLDK 254
+ +++ + + ++ +L +
Sbjct: 196 ESIAKSLKSAVLHPDSIYGTPLAPSWIKVKEKLVE 230
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 33.0 bits (76), Expect = 0.50
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 172 IVAINKIDKL---DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
++ INKID ++ +++ D +++ P+ + + +S KT G +K+LE
Sbjct: 168 LIVINKIDLADAVGADIKKMENDA--KRINPD-----AEVVLLSLKTMEGFDKVLE 216
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 33.1 bits (76), Expect = 0.55
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 170 PLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229
+I+ +NK D L +I + +++ G P I +AK G G+ +L I+L
Sbjct: 111 NIILVLNKFDLLKKKGAKIDIKKMRKEL------GV-PVIPTNAKKGEGVEELKRMIALM 163
Query: 230 AEILELKAPVTTPAKGVIIESRLDK 254
AE P+ P IE +
Sbjct: 164 AEGKVTTNPI-IPRYDEDIEREIKH 187
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 33.0 bits (76), Expect = 0.56
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 172 IVAINKIDKL---DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
++ INK+ +++++K D + + I + KTG G + ++
Sbjct: 158 LIVINKVALAEAVGADVEKMKADA-------KLINPRAKIIEMDLKTGKGFEEWID 206
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 32.7 bits (75), Expect = 0.59
Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 27/157 (17%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFL--DTPGHEAFTAMRARGA 137
GKT++L Y K + + IG +NV T + +I F D G + +
Sbjct: 41 GKTTIL-YKLKLGEIVT----TIPTIG-FNVETVEYKNICFTVWDVGGQDKIRPLWRHYF 94
Query: 138 KVTDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD-INLDRIKQD 191
+ T ++ VV + D + ++ + + ++ L+V NK D + + + +
Sbjct: 95 QNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDK 154
Query: 192 L----ISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
L + + + A G G+ L+
Sbjct: 155 LGLQHLRSR--------TWYVQATCATQGTGLYDGLD 183
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 33.3 bits (76), Expect = 0.60
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 137 AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKID-KLDINLDRIKQDLIS- 194
A + D VL+ A G Q + + IV +NK D + ++L +
Sbjct: 190 ANMVDTFVLLTLARTGDQLQG----IKKGVLELADIVVVNKADGEHHKEARLAARELSAA 245
Query: 195 -EQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ P E P +++SA G G+ +L + +
Sbjct: 246 IRLIYPREALWRPPVLTMSAVEGRGLAELWDTV 278
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 33.2 bits (75), Expect = 0.65
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 934 GKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRIN--IID 991
GK+TLI+ L R++ + ER + I + IE G ++ ++D
Sbjct: 30 GKSTLINSLFLTD-------LYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 82
Query: 992 TPGHAD 997
TPG+ D
Sbjct: 83 TPGYGD 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 32.5 bits (75), Expect = 0.70
Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 36/162 (22%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFL--DTPGHEAFTAMRARGA 137
GKT+ + + + + + +G +N+ G++T D G F +M R
Sbjct: 34 GKTTFV-NVIASGQFNED---MIPTVG-FNMRKITKGNVTIKLWDIGGQPRFRSMWERYC 88
Query: 138 KVTDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD---------- 182
+ +V +V AAD + ++ + ++ G+P++V NK D
Sbjct: 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEK 148
Query: 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+NL I+ I SIS K I+ L+
Sbjct: 149 MNLSAIQDREICCY-------------SISCKEKDNIDITLQ 177
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 32.2 bits (74), Expect = 0.71
Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 37/162 (22%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFL--DTPGHEAFTAMRARGA 137
GKT++L VV + IG NV + FL D G E+ +
Sbjct: 28 GKTTILYQFSMNEVVH-----TSPTIG-SNVEEIVINNTRFLMWDIGGQESLRSSWNTYY 81
Query: 138 KVTDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD---------- 182
T+ V++VV + D + TRE +AH + L++ NK D +
Sbjct: 82 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQF 141
Query: 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
+ L IK + A TG G+ + LE
Sbjct: 142 LKLTSIKDHQWH-------------IQACCALTGEGLCQGLE 170
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 32.7 bits (74), Expect = 0.76
Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 34/140 (24%)
Query: 120 FLDTPGHEAFTAMRARGAKVTD-----IVVLVVAADDGVMPQTREAIAHAKIS-----GV 169
+DTPG G ++ + +VV + + P + + G
Sbjct: 113 LIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGA 172
Query: 170 PLIVAINKIDKLD-----------INLDRIKQDLISE------------QVIPEEYGGAS 206
I A+NK+D L ++D + L + ++ E
Sbjct: 173 TTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVR 232
Query: 207 PFISISAKTGVGINKLLENI 226
+ +SAKT G L
Sbjct: 233 -VLYLSAKTREGFEDLETLA 251
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 32.1 bits (74), Expect = 0.86
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 23/112 (20%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAK-ISGVPLIVAI 175
+DT G + ++ + + +LV + V+ + +P+++
Sbjct: 59 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINK 221
NK DL E+VI E G A + F+ SAK
Sbjct: 119 NKK------------DLHMERVISYEEGKALAESWNAAFLESSAKENQTAVD 158
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 31.8 bits (73), Expect = 0.99
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 27/157 (17%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFL--DTPGHEAFTAMRARGA 137
GKT++L VV + IG NV + FL D G E+ +
Sbjct: 33 GKTTILYQFSMNEVVH-----TSPTIG-SNVEEIVINNTRFLMWDIGGQESLRSSWNTYY 86
Query: 138 KVTDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD-INLDRIKQD 191
T+ V++VV + D + TRE +AH + L++ NK D + + + I Q
Sbjct: 87 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQF 146
Query: 192 L----ISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
L I + + A TG G+ + LE
Sbjct: 147 LKLTSIKDH--------QWHIQACCALTGEGLCQGLE 175
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 31.4 bits (72), Expect = 1.0
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 19/153 (12%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFL--DTPGHEAFTAMRARGA 137
GKT++L Y K E IG +NV T + +I+F D G + +
Sbjct: 12 GKTTIL-YKLKLG----EIVTTIPTIG-FNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 65
Query: 138 KVTDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLD-INLDRIKQD 191
+ T ++ VV + D + + RE +A ++ L+V NK D + +N I
Sbjct: 66 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 125
Query: 192 LISEQVIPEEYGGASPFISISAKTGVGINKLLE 224
L + + A +G G+ + L+
Sbjct: 126 LGLHSL----RHRNWYIQATCATSGDGLYEGLD 154
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.8 bits (74), Expect = 1.0
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 14/63 (22%)
Query: 934 GKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRIN--IID 991
GK+TL+D L N + + G+ + S ++ + R+ I+
Sbjct: 54 GKSTLMDTLF------------NTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101
Query: 992 TPG 994
T G
Sbjct: 102 TVG 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 32.3 bits (73), Expect = 1.2
Identities = 25/176 (14%), Positives = 66/176 (37%), Gaps = 27/176 (15%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE-AGGITQHIGA-----YNVVTNHGSITFL--DT 123
+ +MG GK+S+ +++FS + T+ +GA ++ + G++T D
Sbjct: 6 LLLMGRSGSGKSSMR------SIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDC 59
Query: 124 PGHEAF-----TAMRARGAKVTDIVVLVVAADDGVMPQTREAI------AHAKISGVPLI 172
G + F T + ++ +++ V + + + E +
Sbjct: 60 GGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF 119
Query: 173 VAINKIDKLDINLDRIKQDLISEQVIPE--EYGGASPFISISAKTGVGINKLLENI 226
V ++K+D + ++ ++ + + E+G + ++ + K I
Sbjct: 120 VLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQI 175
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 32.0 bits (73), Expect = 1.2
Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 22/128 (17%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEAFTAMRARGA-- 137
GKT L + ++ IT Y V N G S+T +D PGHE R
Sbjct: 19 GKTLLFVRLLTGQYRDTQTS-ITDSSAIYKVNNNRGNSLTLIDLPGHE-----SLRFQLL 72
Query: 138 ----KVTDIVVLVV--AADDGVMPQTRE------AIAHAKISGVPLIVAINKIDKLD-IN 184
VV VV AA + E + A + L++A NK D +
Sbjct: 73 DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS 132
Query: 185 LDRIKQDL 192
I+Q L
Sbjct: 133 AKLIQQQL 140
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation
termination, peptide release, PTC, P biosynthesis,
GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Length = 204
Score = 31.8 bits (73), Expect = 1.2
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 1118 SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRVF 1175
+P++L I+ Y +G + +G++ SG I Q +V+M PNK ++ I
Sbjct: 3 LGSPIRLPIVDK-YKD-MGTVVLGKLESGSICKGQQLVMM------PNKHNVEVLGIL-- 52
Query: 1176 KGLDRVLVNEALSGDIVLIT----GIEEICIGSTICDPSKP 1212
D V + G+ + I EEI G +CDP+
Sbjct: 53 --SDDVETDTVAPGENLKIRLKGIEEEEILPGFILCDPNNL 91
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 31.8 bits (73), Expect = 1.3
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 29/115 (25%)
Query: 121 LDTPGHEAFTAMR---ARGAKVTDIVVLVVAADD----GVMPQTREAIAHAK-ISGVPLI 172
+DT G + ++ + G VLV + V+ + + + VP++
Sbjct: 77 VDTAGQDEYSILPYSFIIGV---HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV 133
Query: 173 VAINKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINK 221
+ NK DL E+ + G + F+ SA+
Sbjct: 134 LVGNKA------------DLSPEREVQAVEGKKLAESWGATFMESSARENQLTQG 176
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 31.6 bits (72), Expect = 1.4
Identities = 24/160 (15%), Positives = 49/160 (30%), Gaps = 36/160 (22%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHI----GAYNVVTNHGSITFL----DTPGHEAFTAM 132
GKT+LL VF++ ++ Y + DT G + +
Sbjct: 19 GKTALL-------HVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 71
Query: 133 RARGAKVTDIVVLVVAADDGVMPQTREAIA---------HAKISGVPLIVAINKIDKLDI 183
R +D V++ P+T +++ +++ K D
Sbjct: 72 RPLSYPDSDAVLICFDISR---PETLDSVLKKWKGEIQEFCP--NTKMLLVGCKSDLRTD 126
Query: 184 NLDRIKQDLISEQVIPEEYG-------GASPFISISAKTG 216
++ + + + G GA+ +I SA
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 166
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 31.3 bits (72), Expect = 1.5
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 23/112 (20%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAK-ISGVPLIVAI 175
LDT G E + A+R + + + V + + RE I K VP ++
Sbjct: 57 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINK 221
NK DL ++ + E ++ SAKT ++K
Sbjct: 117 NKS------------DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDK 156
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 32.1 bits (73), Expect = 1.5
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 137 AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKID-KLDINLDRIKQDLIS- 194
A++ D + + A G Q + + V ++ INK D N+ + S
Sbjct: 167 ARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHMYESA 222
Query: 195 -EQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + ++ SA GI+++ I
Sbjct: 223 LHILRRKYDEWQPRVLTCSALEKRGIDEIWHAI 255
Score = 29.8 bits (67), Expect = 7.1
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 989 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKID 1048
I++T G G + MVD + L A G Q K + ++V+NK D
Sbjct: 153 IVETVG---VGQSETEVARMVDCFISLQIAGGGDDLQGI----KKGLMEVADLIVINKDD 205
Query: 1049 RSNARPEWVVDATFDLFDKLCATEEQLDFP-VIYTSALHG 1087
N + ++ + + P V+ SAL
Sbjct: 206 GDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEK 245
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 31.7 bits (71), Expect = 1.5
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 934 GKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTR--INIID 991
GK+TLI+ L ++ + ++ + + I+ G + + I+D
Sbjct: 20 GKSTLINSLF--------LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVD 71
Query: 992 TPGHAD 997
TPG D
Sbjct: 72 TPGFGD 77
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase,
glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo
sapiens} PDB: 3thc_A*
Length = 654
Score = 32.1 bits (72), Expect = 1.7
Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 1215 LPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSI 1274
L + + + + + P +++ + + + +++
Sbjct: 381 LTFIQVKQHYGFVLYRTTL-PQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVIT 439
Query: 1275 YEVSGRGELHLTILIENMRREGY 1297
++G+ L +L+ENM R Y
Sbjct: 440 LNITGKAGATLDLLVENMGRVNY 462
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 31.0 bits (71), Expect = 1.8
Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 51/182 (28%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGA----YNVVTNHGSITFL---DTPGHEAFTAMR 133
GKTSL+ R N +S+ T IGA V + + + DT G E F ++
Sbjct: 20 GKTSLM--HRYVNDKYSQQYKAT--IGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLG 75
Query: 134 A---RGAKVTDIVVLVVAADDGVMPQT--------REAIAHAKIS---GVPLIVAINKID 179
RGA D VLV + + E + HA ++ P ++ NKID
Sbjct: 76 VAFYRGA---DCCVLVYDVTN---ASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 180 KLDINLDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLENISLQAEI 232
+ S++++ E+ G P SAK + ++ E I+
Sbjct: 130 AEE-----------SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA--RSA 176
Query: 233 LE 234
L+
Sbjct: 177 LQ 178
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 31.5 bits (71), Expect = 1.8
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 17/69 (24%)
Query: 158 REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGAS-----PFISIS 212
+ P++V + K D E+ I + + A + S
Sbjct: 188 SNLYNQLAKTKKPIVVVLTKCD------------EGVERYIRDAHTFALSKKNLQVVETS 235
Query: 213 AKTGVGINK 221
A++ V ++
Sbjct: 236 ARSNVNVDL 244
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 31.8 bits (71), Expect = 1.9
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTR 986
++ GK+TLI+ L R++ + ER + I + IE G +
Sbjct: 42 VVGESGLGKSTLINSLFLT-------DLYPERVIPGAAEKIERTVQIEASTVEIEERGVK 94
Query: 987 IN--IIDTPGHAD 997
+ ++DTPG+ D
Sbjct: 95 LRLTVVDTPGYGD 107
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.9 bits (71), Expect = 2.1
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 987 INIIDTPGHADFGGEVERILSMV---DNVLLLIDAVEGPM-PQTRFVTRKALKLGFKPIV 1042
I I+D+PG D E L V +L ++ A + + R++ G
Sbjct: 176 IEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFF 235
Query: 1043 VVNKIDR 1049
+VN D+
Sbjct: 236 LVNAWDQ 242
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 31.2 bits (70), Expect = 2.2
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE--AGGITQHIGAYNVVTNHGSITFLDTPG 125
+ ++G GK++ + I + S+ + +T+ + I +DTP
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPD 80
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 30.7 bits (70), Expect = 2.8
Identities = 45/173 (26%), Positives = 62/173 (35%), Gaps = 50/173 (28%)
Query: 81 GKTSLLD-YIRKTNVVFSEAGGITQHIGA----YNVVTNHGSITFL--DTPGHEAFTAMR 133
GKTSL++ Y+ K FS T IGA V+ + +T DT G E F ++
Sbjct: 20 GKTSLMNQYVNKK---FSNQYKAT--IGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 134 A---RGAKVTDIVVLVVAADDGVMPQT--------REAIAHAKI---SGVPLIVAINKID 179
RGA D VLV P T E + A P +V NKID
Sbjct: 75 VAFYRGA---DCCVLVFDVTA---PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 180 KLDINLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLLENI 226
L + QV + P+ SAK + + + + I
Sbjct: 129 ------------LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 30.2 bits (69), Expect = 3.0
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 23/117 (19%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAK-ISGVPLIVAI 175
D + + + D V+V + D + R + A+ VP+I+
Sbjct: 54 YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 113
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINKLLENI 226
NK DL+ + + + G A FI SA + L E +
Sbjct: 114 NKS------------DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 30.2 bits (69), Expect = 3.5
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 23/117 (19%)
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAK-ISGVPLIVAI 175
LDT G E + A+R + + + V + + RE I K VP ++
Sbjct: 71 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINKLLENI 226
NK DL ++ + E ++ SAKT ++K+ ++
Sbjct: 131 NKS------------DLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 30.9 bits (70), Expect = 4.3
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 172 IVAINKIDKLDINLDRIKQDLISEQVIPEE-YGGASPFI---SISAKTGV-GINKLLENI 226
+ +++ D+ D K + + + I A+ G I +LL+ +
Sbjct: 409 VSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKEL 468
Query: 227 SLQAEILELKA 237
L+A EL
Sbjct: 469 DLEALEKELLE 479
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 29.6 bits (67), Expect = 5.6
Identities = 34/198 (17%), Positives = 66/198 (33%), Gaps = 39/198 (19%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGA----YNVVTNHGSITFL---DTPGHEAFTAMR 133
GKT+ + R + F + T +GA + + G++ DT G E ++
Sbjct: 23 GKTTYI--NRVLDGRFEKNYNAT--VGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK 78
Query: 134 A---RGAKVTDIVVLVVAAD--DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI 188
GA + V + + +E A + P++V NKID
Sbjct: 79 DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKID--------- 128
Query: 189 KQDLISEQVIPEEYGGAS------PFISISAKTGVGINK----LLENISLQAEILELKAP 238
+ + Q I ++ + ISAKT L + + +++ +
Sbjct: 129 ---IKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNV 185
Query: 239 VTTPAKGVIIESRLDKGK 256
P + ++ K
Sbjct: 186 NLEPTEVNYDYHSPEESK 203
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 30.0 bits (67), Expect = 5.8
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE--AGGITQHIGAYNVVTNHGSITFLDTPG 125
+ ++G GK++ + I FS A +T+ + + + +DTP
Sbjct: 24 LILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPD 79
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta
lactamase, mitochondria; 2.60A {Homo sapiens}
Length = 289
Score = 30.2 bits (68), Expect = 5.8
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 9/119 (7%)
Query: 930 HVDHGKTTLIDHLLRQSG---TFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTR 986
H DH + I + + T+ + + E+ I+ G
Sbjct: 80 HRDH--SGGIGDICKSINNDTTYCIKKLPRNPQREEIIGNGEQQYVYLKDGDVIKTEGAT 137
Query: 987 INIIDTPGHAD----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
+ ++ TPGH D E E + D +L V + ++ LK+ I
Sbjct: 138 LRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTVFEDLYDYMNSLKELLKIKADII 196
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 29.2 bits (65), Expect = 7.3
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 30/146 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE-AGGITQHIGA-----YNVVTNHGSITF--LDT 123
+ +MG GK+S+ VVF + + T + + + ++N + F D
Sbjct: 23 ILLMGLRRSGKSSIQ------KVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDF 76
Query: 124 PGHEAF---TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKI---------SGVPL 171
PG F T + T ++ V+ A D EA+ I +
Sbjct: 77 PGQMDFFDPTFDYEMIFRGTGALIYVIDAQD----DYMEALTRLHITVSKAYKVNPDMNF 132
Query: 172 IVAINKIDKLDINLDRIKQDLISEQV 197
V I+K+D L + Q I ++
Sbjct: 133 EVFIHKVDGLSDDHKIETQRDIHQRA 158
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 29.8 bits (66), Expect = 8.7
Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 17/168 (10%)
Query: 1153 DVVIMNGPDDKPNKAKINQIRVFKGLDRVLVN-EALSGDIVLITGIEEICIGSTICDPSK 1211
VV+ +K KIN+ G+ + L G+ + G E + +
Sbjct: 115 QVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVL---DPTGEE 171
Query: 1212 PNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD 1271
P + +I+ M++++ +G F+ +++ + N+ L +
Sbjct: 172 PRTGMVSDIEPD--GTVTMLDDNRHGLEDGNFVRFSEVEGL---DKLNDGTLFKVEVLGP 226
Query: 1272 DSIYEVSGRGELHLTILIENMRREGYELSVSRPRVI-FKTLNGELYEP 1318
+ + ++ G V PR I FK+L +L P
Sbjct: 227 FAF-------RIGSVKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNP 267
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 29.5 bits (66), Expect = 8.9
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 140 TDIVVLVV-AADDGVMPQTREA----IAHAKISGVPLIVAINKID 179
T ++ VV + D + + RE +A ++ L+V NK D
Sbjct: 233 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 29.3 bits (65), Expect = 9.4
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 718 NYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKIS 772
YL E + +E + ++ + ++D + N+ N ++ + IS
Sbjct: 178 KYLQELHELHEDWLIHQRRPQSCKV--LVLDADLNLENIGTEYQRSESSIFDAIS 230
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.389
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 23,588,903
Number of extensions: 1573493
Number of successful extensions: 3954
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3626
Number of HSP's successfully gapped: 317
Length of query: 1527
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1421
Effective length of database: 3,742,167
Effective search space: 5317619307
Effective search space used: 5317619307
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.3 bits)