RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1758
(1527 letters)
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 199 bits (506), Expect = 2e-58
Identities = 73/218 (33%), Positives = 122/218 (55%), Gaps = 4/218 (1%)
Query: 663 HGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSE 722
G++++DKP G++S++ + + + + ++VG+ GTLDP ATG+L + ATK L+
Sbjct: 4 PGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTA 63
Query: 723 ADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALK 782
A K Y A I LG TT T D EG+++ +IE I+ + G+I Q+P SA+K
Sbjct: 64 APKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIK 123
Query: 783 YKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT----IPYLTLRIHCSKGTYIRVLSED 838
G Y+ AR G +++ + R I+I + ++ + + + I CS GTYIR L+ D
Sbjct: 124 VGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARD 183
Query: 839 IGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSE 876
+G LG G H+ LRR + + LD+ ++D + +
Sbjct: 184 LGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPA 221
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB
{Thermotoga maritima [TaxId: 2336]}
Length = 228
Score = 188 bits (479), Expect = 8e-55
Identities = 81/230 (35%), Positives = 127/230 (55%), Gaps = 4/230 (1%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
+ HG+L+ KP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ +
Sbjct: 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFY 60
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
+ K Y + LG+ TET DI G + + + E I + + +F G+ Q+PP YSA
Sbjct: 61 KDLKKVYWVKMRLGLITETFDITG-EVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSA 119
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
KYKG LYK AR G I + +KI+KI ++ ++ R+ S GTYIR L DIG
Sbjct: 120 KKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIG 179
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILL 890
LGCGA L R + T+++ LN+ + E + +IP++ L
Sbjct: 180 YKLGCGATAVELVRESVGPHTIEESLNVFEA---APEEIENRIIPLEKCL 226
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Cow (Bos taurus), mitochondrial [TaxId:
9913]}
Length = 196
Score = 179 bits (456), Expect = 4e-52
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 5/190 (2%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
I HVDHGKTTL + + + +D+ E+ RGITI + +
Sbjct: 7 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV- 1044
D PGHAD+ + + +D +L++ A +GPMPQTR A ++G + +VV
Sbjct: 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYV 126
Query: 1045 NKID--RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 1102
NK D + + E V +L + E + P+I SAL + + ++
Sbjct: 127 NKADAVQDSEMVELVELEIRELLTEFGYKGE--ETPIIVGSALCALEQRDPELGLKSVQK 184
Query: 1103 LFEAILKYVP 1112
L +A+ Y+P
Sbjct: 185 LLDAVDTYIP 194
Score = 131 bits (331), Expect = 2e-35
Identities = 52/184 (28%), Positives = 75/184 (40%), Gaps = 29/184 (15%)
Query: 72 VTIMGHVDHGKTSLLDYIRKT----------------NVVFSEAGGITQHIGAYNVVTNH 115
V +GHVDHGKT+L I K N A GIT + T
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65
Query: 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV-PLIVA 174
D PGH + G D +LVVAA+DG MPQTRE + A+ GV ++V
Sbjct: 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVY 125
Query: 175 INKIDKLD--INLDRIKQDLISEQVIPEEYGGASPFISISAKTGV----------GINKL 222
+NK D + ++ ++ ++ G +P I SA + + KL
Sbjct: 126 VNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKL 185
Query: 223 LENI 226
L+ +
Sbjct: 186 LDAV 189
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB
{Escherichia coli [TaxId: 562]}
Length = 242
Score = 181 bits (459), Expect = 6e-52
Identities = 107/228 (46%), Positives = 152/228 (66%), Gaps = 1/228 (0%)
Query: 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 721
I+GVLLLDKP G+SSN+AL+K+K + NA + G+TG LDP ATG+LP+C GEATKFS YL
Sbjct: 3 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 62
Query: 722 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSAL 781
++DK Y I LG T+T D +G+I+ + + S E + L F G I QIP MYSAL
Sbjct: 63 DSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 121
Query: 782 KYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGK 841
KY+G LY+YAR GI + R+ R I +Y++ I + L L IHCSKGTYIR + +D+G+
Sbjct: 122 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 181
Query: 842 MLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDIL 889
LGCGAH+ YLRR+ + K +++ + ++ + + E + ++L
Sbjct: 182 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 229
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 171 bits (435), Expect = 3e-49
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 10/197 (5%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNI-NARIMDSNEIEKERGITIFSKNCSIEYNG 984
I HVDHGKTTL L + N + + +D E+ RGITI + + E
Sbjct: 7 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 66
Query: 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV-V 1043
+ +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G IV
Sbjct: 67 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 126
Query: 1044 VNKIDR--SNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQG--- 1098
+NK+D + V DL ++ +++ + N K R+G
Sbjct: 127 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 186
Query: 1099 ---NMIPLFEAILKYVP 1112
+ L +AI +Y+P
Sbjct: 187 WVDKIWELLDAIDEYIP 203
Score = 143 bits (363), Expect = 2e-39
Identities = 52/168 (30%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 72 VTIMGHVDHGKTSLLDYIRKT-----------------NVVFSEAGGITQHIGAYNVVTN 114
V +GHVDHGKT+L + A GIT + T
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIV 173
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP ++V
Sbjct: 66 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 125
Query: 174 AINKIDKLDI--NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+NK+D +D LD ++ ++ E G P I SA +
Sbjct: 126 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQ 173
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 245
Score = 159 bits (402), Expect = 3e-44
Identities = 69/240 (28%), Positives = 108/240 (45%), Gaps = 44/240 (18%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I GV+ LDKP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+ L
Sbjct: 40 IQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQAL 99
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
A K Y A++HL + I +++ F G+I Q PP+ SA
Sbjct: 100 LPAGKEYVALMHLHGDVPE------------------DKIIQVMKEFEGEIIQRPPLRSA 141
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
+KR+LR K+Y I +++ + R+ GTYIR L IG
Sbjct: 142 -----------------VKRRLRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIG 184
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCL-NIDTIIKYSEYERISS--------LIPIDILLS 891
LG GAH+ LRR D+ L + ++ Y + + + P++ +
Sbjct: 185 LALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVE 244
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 230
Score = 154 bits (391), Expect = 6e-43
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 43/238 (18%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I +GV+++DKP G +S+ +K +LN K G+ GTLDP TG+LP+ ATK
Sbjct: 27 IKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMW 86
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
K Y ++HL D I ++ F G+I Q PP+ +A
Sbjct: 87 HIPPKEYVCLMHLHRDASEED------------------ILRVFKEFTGRIYQRPPLKAA 128
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
+KR+LR KI+++ ++D + R+ C GTYIR L EDIG
Sbjct: 129 -----------------VKRRLRIRKIHELELLDKDGKDVLFRVKCQSGTYIRKLCEDIG 171
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISS--------LIPIDILL 890
+ LG AH++ LRR + + ++ + + + P++ L
Sbjct: 172 EALGTSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGL 229
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 144 bits (364), Expect = 3e-39
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 28/188 (14%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNI---------------NARIMDSNEIEKERG 970
+I HVD GK+T HL+ + G K A ++D + E+ERG
Sbjct: 10 VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERG 69
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM------- 1023
ITI E ++ +ID PGH DF + S D +L+I G
Sbjct: 70 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKD 129
Query: 1024 PQTRFVTRKALKLGFKPIVV-VNKIDRSN---ARPEWVVDATFDLFDKLCATEEQLDFPV 1079
QTR A LG + ++V VNK+D +R + +V T + K+ + + F
Sbjct: 130 GQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPF-- 187
Query: 1080 IYTSALHG 1087
+ S +G
Sbjct: 188 VPISGWNG 195
Score = 110 bits (277), Expect = 1e-27
Identities = 48/198 (24%), Positives = 71/198 (35%), Gaps = 42/198 (21%)
Query: 72 VTIMGHVDHGKTSLL------------DYIRKTNVVFSEAGG------------------ 101
V ++GHVD GK++ I K +E G
Sbjct: 9 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER 68
Query: 102 -ITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM------ 154
IT I + T +T +D PGH F G D +L++A G
Sbjct: 69 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK 128
Query: 155 -PQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYG---GASPFI 209
QTRE A GV LIVA+NK+D + + R ++ + ++ G PF+
Sbjct: 129 DGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFV 188
Query: 210 SISAKTGVGINKLLENIS 227
IS G + + N
Sbjct: 189 PISGWNGDNMIEATTNAP 206
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G)
domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 145 bits (366), Expect = 4e-39
Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 5/170 (2%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNI--NARIMDSNEIEKERGITIFSKNCSIEYN 983
I AH+D GKTT + +L +G K + A MD E E+ERGITI + + +
Sbjct: 10 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 69
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
RINIID PGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 70 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 129
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENS 1093
NK+D++ A V + ++L A + P+ G +
Sbjct: 130 ANKMDKTGADLWLV---IRTMQERLGARPVVMQLPIGREDTFSGIIDVLR 176
Score = 120 bits (301), Expect = 2e-30
Identities = 33/139 (23%), Positives = 49/139 (35%), Gaps = 18/139 (12%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFS-----EAGGITQHIGAYNV-------------VT 113
+ I H+D GKT+ + I G T
Sbjct: 9 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 68
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
I +D PGH FT R +V D ++V + GV PQ+ A+ VP I
Sbjct: 69 KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 128
Query: 174 AINKIDKLDINLDRIKQDL 192
NK+DK +L + + +
Sbjct: 129 FANKMDKTGADLWLVIRTM 147
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 142 bits (358), Expect = 1e-38
Identities = 57/220 (25%), Positives = 82/220 (37%), Gaps = 37/220 (16%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERG 970
+I HVDHGK+TL+ LL G + A ++D + E+ERG
Sbjct: 7 IVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG 66
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-------M 1023
+TI E IID PGH DF + S D +L++ A +G
Sbjct: 67 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVE 126
Query: 1024 PQTRFVTRKALKLGFKP-IVVVNKID-----RSNARPEWVVDATFDLFDKLCATEEQLDF 1077
QTR A +G IV VNK+D R + +VD ++ F
Sbjct: 127 GQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRF 186
Query: 1078 PVIYTSALHGYANENSKARQGNM----IPLFEAILKYVPV 1113
+ A G +N + NM P E L + +
Sbjct: 187 --VPVVAPSG---DNITHKSENMKWYNGPTLEEYLDQLEL 221
Score = 112 bits (280), Expect = 2e-28
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 50/217 (23%)
Query: 72 VTIMGHVDHGKTSLLD------------YIRKTNVVFSEAG------------------- 100
+ ++GHVDHGK++L+ +++ + G
Sbjct: 6 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 65
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV------- 153
G+T ++ T T +D PGH F GA D +LVV+A G
Sbjct: 66 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSV 125
Query: 154 MPQTREAIAHAKISGVP-LIVAINKIDKLDINLD--RIKQDLISEQVIPEEYG---GASP 207
QTRE I AK G+ LIVA+NK+D + D R K+ + YG
Sbjct: 126 EGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVR 185
Query: 208 FISISAKTGVGINKLLENI------SLQAEILELKAP 238
F+ + A +G I EN+ +L+ + +L+ P
Sbjct: 186 FVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELP 222
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 138 bits (349), Expect = 4e-36
Identities = 62/170 (36%), Positives = 91/170 (53%), Gaps = 19/170 (11%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--- 982
++IAHVDHGK+TL D L++++G + AR D+ + E+ERGITI S S+
Sbjct: 21 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 80
Query: 983 -------------NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFV 1029
N IN+ID+PGH DF EV L + D L+++D +EG QT V
Sbjct: 81 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 140
Query: 1030 TRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
R+AL KP+VV+NK+DR+ + + DL+ T E ++ V
Sbjct: 141 LRQALGERIKPVVVINKVDRALLELQVSKE---DLYQTFARTVESVNVIV 187
Score = 94.0 bits (233), Expect = 5e-21
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 32/153 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------------GITQHIGAYNVVT-- 113
++++ HVDHGK++L D + + + S A GIT A ++ +
Sbjct: 20 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 79
Query: 114 --------------NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTRE 159
N I +D+PGH F++ +VTD ++VV +GV QT
Sbjct: 80 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 139
Query: 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDL 192
+ A + +V INK+D+ + L K+DL
Sbjct: 140 VLRQALGERIKPVVVINKVDRALLELQVSKEDL 172
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 113 bits (284), Expect = 9e-29
Identities = 50/210 (23%), Positives = 77/210 (36%), Gaps = 27/210 (12%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR-----------------IMDSNE 964
+++ +VD GK+TLI LL S ++ ++D +
Sbjct: 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQ 68
Query: 965 IEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP 1024
E+E+GITI + I DTPGH + + S D ++L+DA G
Sbjct: 69 AEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT 128
Query: 1025 QTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA--TEEQLDFPVIYT 1082
QTR + A LG K IVV N E V ++ + K + +
Sbjct: 129 QTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPM 188
Query: 1083 SALHGYANENSKARQGNMI-----PLFEAI 1107
SAL G +N + L E +
Sbjct: 189 SALKG---DNVVNKSERSPWYAGQSLMEIL 215
Score = 98.4 bits (244), Expect = 2e-23
Identities = 43/194 (22%), Positives = 66/194 (34%), Gaps = 38/194 (19%)
Query: 71 IVTIMGHVDHGKTSLLDYI---------------------------------RKTNVVFS 97
+T G+VD GK++L+ + +
Sbjct: 12 FLTC-GNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAE 70
Query: 98 EAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT 157
GIT + T DTPGHE +T A GA D+ +++V A GV QT
Sbjct: 71 REQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT 130
Query: 158 REAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEY---GGASPFISISA 213
R A + G+ ++VAINK+D + + E F+ +SA
Sbjct: 131 RRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSA 190
Query: 214 KTGVGINKLLENIS 227
G + E
Sbjct: 191 LKGDNVVNKSERSP 204
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 112 bits (279), Expect = 4e-28
Identities = 69/215 (32%), Positives = 103/215 (47%), Gaps = 50/215 (23%)
Query: 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGA------------------ 108
+R+PIV+++GHVDHGKT+LLD+IR + V EAGGITQHIGA
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
+++ + F+DTPGHEAFT +R RG + D+ +L+V ++G PQT+EA+ ++
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 169 VPLIVAINKIDKLDINLDRIKQDLISEQV------------------------------- 197
P +VA NKID++ + +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 198 -IPEEYGGASPFISISAKTGVGINKLLENISLQAE 231
++ I ISA TG GI +LL + A+
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217
Score = 89.4 bits (220), Expect = 2e-20
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 3/190 (1%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM--DSNEIEKERGITIFSKNCSIEYN 983
+++ HVDHGKTTL+DH+ + R+ I I + E F K SI
Sbjct: 9 SVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRET 68
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
+ IDTPGH F +R ++ D +L++D EG PQT+ +V
Sbjct: 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVA 128
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPL 1103
NKIDR + + F K + Q + E ++ + + +
Sbjct: 129 ANKIDRIHGWRVHEGRPFMETFSKQDI-QVQQKLDTKVYELVGKLHEEGFESERFDRVTD 187
Query: 1104 FEAILKYVPV 1113
F + + +P+
Sbjct: 188 FASQVSIIPI 197
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor
ERF2, G domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 245
Score = 108 bits (271), Expect = 7e-27
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 28/190 (14%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERG 970
I HVD GK+TL ++L +G K + +DS E+E+G
Sbjct: 28 VFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG 87
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP------ 1024
T+ E R +++D PGH + + S D +L+I A G
Sbjct: 88 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG 147
Query: 1025 -QTRFVTRKALKLGFKPIVV-VNKIDR-----SNARPEWVVDATFDLFDKLCATEEQLDF 1077
QTR A G +VV +NK+D S R + VD ++ + D
Sbjct: 148 GQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDV 207
Query: 1078 PVIYTSALHG 1087
+ SA G
Sbjct: 208 KYMPVSAYTG 217
Score = 94.9 bits (235), Expect = 5e-22
Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 49/225 (21%)
Query: 48 DPESFLLNEYNKNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAG------- 100
D ++ + E K++ + V + +GHVD GK++L I + +
Sbjct: 6 DLQNEVDQELLKDMYGKEHVN---IVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIERE 62
Query: 101 ------------------------GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARG 136
G T +G T H + LD PGH+ + G
Sbjct: 63 AKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMING 122
Query: 137 AKVTDIVVLVVAADDGVMP-------QTREAIAHAKISGVP-LIVAINKIDKLDINLDRI 188
A DI VLV++A G QTRE A+ G+ L+V INK+D+ +
Sbjct: 123 ASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEE 182
Query: 189 KQDLI-------SEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ +V ++ +SA TG + +++
Sbjct: 183 RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSS 227
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 105 bits (261), Expect = 6e-26
Identities = 42/204 (20%), Positives = 71/204 (34%), Gaps = 30/204 (14%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
++ HVDHGKTTL+ + + + + E G+ K
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEP 71
Query: 986 ---------------RINIIDTPGHADFGGEVERILSMVD-NVLLLIDAVEGPMPQTRFV 1029
RI+ ID PGH + +++D +L++ P PQTR
Sbjct: 72 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 131
Query: 1030 TRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
+G K +++ NK+D + + + + P+I SALH
Sbjct: 132 FVALGIIGVKNLIIVQNKVDVVSKEEALSQ---YRQIKQFTKGTWAENVPIIPVSALHKI 188
Query: 1089 ANENSKARQGNMIPLFEAILKYVP 1112
N+ L E I +Y+
Sbjct: 189 ----------NIDSLIEGIEEYIK 202
Score = 93.1 bits (230), Expect = 8e-22
Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 32/187 (17%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFS----------EAGGITQHIGAYNVVTNHG----- 116
+ ++GHVDHGKT+L+ I + G +IG
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
Query: 117 ----------------SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA-ADDGVMPQTRE 159
I+F+D PGHE A GA + D +LVVA + PQTRE
Sbjct: 71 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 130
Query: 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
I GV ++ + + + + Q +Q + P I +SA + I
Sbjct: 131 HFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINI 190
Query: 220 NKLLENI 226
+ L+E I
Sbjct: 191 DSLIEGI 197
>d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 131
Score = 95.3 bits (237), Expect = 2e-23
Identities = 25/128 (19%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 353 ENMFNDINKEKV--KNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESD 410
E + ++I K+ +++K D GS E + + L+ + + + +G+++ D
Sbjct: 7 EEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILR-----DMYVPIKVADIGDVSRRD 61
Query: 411 INLAIASK------AIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLI 464
+ A + II FNV+ S + + ++I + N+IY +++E + + +
Sbjct: 62 VVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIE 121
Query: 465 PLEKKENL 472
+KK+ +
Sbjct: 122 EEKKKKWM 129
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 94.0 bits (234), Expect = 2e-23
Identities = 37/71 (52%), Positives = 55/71 (77%)
Query: 469 KENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKD 528
+E ++G AE+RQ V+KV IAGCY+ +G I RDSK+R++R +++ GE+DSLKR+KD
Sbjct: 2 EEKVIGQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKD 61
Query: 529 NVKEVKAGFEC 539
+V+EV G+EC
Sbjct: 62 DVREVAQGYEC 72
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 101
Score = 93.3 bits (232), Expect = 4e-23
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 242 PAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNEN---------- 291
PA+G I+E + + G G +I G LR D + S I + +
Sbjct: 4 PARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMR 63
Query: 292 -----GKNILEAGPSIPVEI--QGLTKVPFSGEELFVI 322
+ + E + ++I G+ V +G L V+
Sbjct: 64 ESRKKFQKVDEVVAAAGIKIVAPGIDDVM-AGSPLRVV 100
>d1pa4a_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Mycoplasma
pneumoniae [TaxId: 2104]}
Length = 96
Score = 92.2 bits (229), Expect = 7e-23
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 544 RIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNL 603
R+EN I R I+ + +I N + +T VK++ D + ++ +N++ + +
Sbjct: 3 RLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNREQIDRVV-GAF 61
Query: 604 SKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAM 638
++AK L+ L++ ++F D +I+NAM
Sbjct: 62 NQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNAM 96
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus
influenzae [TaxId: 727]}
Length = 100
Score = 91.9 bits (228), Expect = 1e-22
Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFN--KDISIKN 598
R R+ +IQ++I+ I+ ++++P I ++T+++V+++ D SYAKIF T +++I+
Sbjct: 1 RSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQ 60
Query: 599 ILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAM 638
+ L KA YIR L K + + +P + F YD S+ M
Sbjct: 61 GMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGM 100
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 95.8 bits (237), Expect = 2e-22
Identities = 30/236 (12%), Positives = 51/236 (21%), Gaps = 80/236 (33%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNV------------------- 111
IV +G GKT+L + + + G +
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 112 -----------------------------VTNHGSITFLDTPGHEAFTAMRARGAKVTD- 141
+ +DTPG G ++ +
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN 121
Query: 142 ----IVVLVVAADDGVMPQTREAIAHAKIS-----GVPLIVAINKIDKLDIN-------- 184
+VV + + P + + G I A+NK+D L
Sbjct: 122 LPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKY 181
Query: 185 --------------LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ E + +SAKT G L
Sbjct: 182 FEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLA 237
Score = 66.6 bits (161), Expect = 2e-12
Identities = 33/208 (15%), Positives = 55/208 (26%), Gaps = 42/208 (20%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNIN----------------ARIMDSNEIEKERG 970
+ GKTTL R K +N + EI +E
Sbjct: 5 FVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGY 64
Query: 971 ITIFSKNCSIEYNGT----------------RINIIDTPGHADFGGEVERILSMVDN--- 1011
+ S + +IDTPG + E + +++N
Sbjct: 65 GPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY 124
Query: 1012 --VLLLIDAVEGPMPQTRF-----VTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDL 1064
V+ + D P L+LG I +NK+D + + F+
Sbjct: 125 PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFED 184
Query: 1065 FDKLCATEEQLDFPVIYTSALHGYANEN 1092
D L A + +
Sbjct: 185 IDYLTARLKLDPSMQGLMAYKMCSMMTE 212
>d1kkga_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Escherichia
coli [TaxId: 562]}
Length = 108
Score = 90.7 bits (225), Expect = 3e-22
Identities = 31/101 (30%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIIN-IITITEVKITLDYSYAKIFFTTFNKDI--SIK 597
R R+ ++Q++I+ I+ +I++P + + T++ V+++ D +YAK++ T N ++K
Sbjct: 7 RPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVK 66
Query: 598 NILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAM 638
+ L +A +IR L K + + +P L FFYDNS+ M
Sbjct: 67 AGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGM 107
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G)
domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 91.1 bits (225), Expect = 2e-20
Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 7/171 (4%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI--MDSNEIEKERGITIFSKNCSIEYN 983
A++ H GKTTL + LL ++G + + D K T+ + + +
Sbjct: 6 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR 65
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
G R+ ++D PG+ DF GE+ L D L+ + A G T A +LG +VV
Sbjct: 66 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVV 125
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK 1094
V K+D + DL L +D P+ G +
Sbjct: 126 VTKLD----KGGDYYALLEDLRSTLGPI-LPIDLPLYEGGKWVGLIDVFHG 171
Score = 59.9 bits (144), Expect = 5e-10
Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 18/126 (14%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG------------------GITQHIGAYNVVT 113
V ++GH GKT+L + + G T G ++
Sbjct: 5 VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF 64
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
+ LD PG+ F + D ++ V+A+ GV T A A+ G+P +V
Sbjct: 65 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMV 124
Query: 174 AINKID 179
+ K+D
Sbjct: 125 VVTKLD 130
>d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human
(Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 83.8 bits (207), Expect = 1e-19
Identities = 14/109 (12%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIIN--IITITEVKITLDYSYAKIFFTTFNKDISIKN 598
RL + + + +++++ + + + +++V +T D+S + ++ T +
Sbjct: 7 RLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQNAH 66
Query: 599 ILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGI 647
+ L ++ ++R L + + +P + F D + +L+
Sbjct: 67 MEAVLQRSAAHMRHLLMSQQTLRNVPPIVFVQDKGNAALAELDQLLAVA 115
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus
thermophilus [TaxId: 274]}
Length = 91
Score = 82.5 bits (204), Expect = 2e-19
Identities = 20/91 (21%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 543 SRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDN 602
+ +E Q++R ++E I +++P + ++T+ V+++ D S ++ F ++ + L
Sbjct: 3 AHLEAQLKRALAEEIQ-ALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFREE---EGALRA 58
Query: 603 LSKAKNYIRFKLSKKLHIHTLPILNFFYDNS 633
LS+A+ + L++++ + LP L F +
Sbjct: 59 LSRAERRLVAALARRVRMRRLPRLEFLPWRA 89
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 195
Score = 84.7 bits (208), Expect = 4e-19
Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 21/197 (10%)
Query: 926 AIIAHVDHGKTTLIDHLL----------RQSGTFRKNQNINARIMDSNEIEKERGITIFS 975
++ HVDHGKTTL L + G K +A I + +
Sbjct: 9 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 68
Query: 976 KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK 1035
R++ ID PGH + S++D +L+I A E AL+
Sbjct: 69 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ 128
Query: 1036 LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 1095
+ + +++ ++ + + + + P+I SALHG
Sbjct: 129 IIGQKNIIIA-QNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGA------- 180
Query: 1096 RQGNMIPLFEAILKYVP 1112
N+ L +AI ++P
Sbjct: 181 ---NIDVLVKAIEDFIP 194
Score = 81.2 bits (199), Expect = 8e-18
Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 29/183 (15%)
Query: 72 VTIMGHVDHGKTSLLDYIRKT---NVVFSEAGGITQHIGAYNVVTNHGS----------- 117
+ ++GHVDHGKT+L + GIT IG +
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 67
Query: 118 ------------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVA-ADDGVMPQTREAIAHA 164
++F+D PGHEA GA + D +LV+A + PQTRE +
Sbjct: 68 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 127
Query: 165 KISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223
+I G +I+A NKI+ +D I E I +P I ISA G I+ L+
Sbjct: 128 QIIGQKNIIIAQNKIELVDKEKALENYRQIKE-FIEGTVAENAPIIPISALHGANIDVLV 186
Query: 224 ENI 226
+ I
Sbjct: 187 KAI 189
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 84.3 bits (207), Expect = 1e-18
Identities = 28/204 (13%), Positives = 62/204 (30%), Gaps = 22/204 (10%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGH 126
P + I G + GKTSLL + +V + G +T +D PGH
Sbjct: 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGH 56
Query: 127 EA----FTAMRARGAKVTDIVVLVVAADDGV---------MPQTREAIAHAKISGVPLIV 173
+ AK ++ +V + + + +G+ +++
Sbjct: 57 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116
Query: 174 AINKIDKLDINLDRIKQDLISEQV--IPEEYGGASPFISISAKTGVGINKLLENISLQAE 231
A NK + +D + ++ + E + + L+ +
Sbjct: 117 ACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDG 176
Query: 232 I-LELKAPVTTPAKGVIIESRLDK 254
+G I + ++ +
Sbjct: 177 FKFANLEASVVAFEGSINKRKISQ 200
Score = 39.6 bits (91), Expect = 0.001
Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 33/146 (22%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
I + GKT+L+ L + + +Y+G+
Sbjct: 7 IIAGPQNSGKTSLLTLLTTD--------------------SVRPTVVSQEPLSAADYDGS 46
Query: 986 RINIIDTPGHA----DFGGEVERILSMVDNVLLLIDAVEGP---------MPQTRFVTRK 1032
+ ++D PGH ++ V ++ ++D+ P + +T
Sbjct: 47 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES 106
Query: 1033 ALKLGFKPIVVVNKIDRSNARPEWVV 1058
+ + G ++ NK + ARP +
Sbjct: 107 SCENGIDILIACNKSELFTARPPSKI 132
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 78.6 bits (192), Expect = 4e-17
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 7/171 (4%)
Query: 72 VTIMGHVDHGKTSLLDYIRKT-------NVVFSEAGGITQHIGAYNVVTNHGSITFLDTP 124
+ I GH+DHGKT+L + + + S+ GIT IG + IT +D P
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAP 67
Query: 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN 184
GH A + D+ ++VV A +G QT E + +P+IV I K D
Sbjct: 68 GHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE 127
Query: 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILEL 235
+ + ++ + S I ISAKTG G+++L I E+
Sbjct: 128 EIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEI 178
Score = 70.9 bits (172), Expect = 2e-14
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
I H+DHGKTTL L + T D ++RGITI + +
Sbjct: 9 GIFGHIDHGKTTLSKVLTEIAST---------SAHDKLPESQKRGITIDIGFSAFKLENY 59
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
RI ++D PGHAD V ++D L+++DA EGP QT ++V
Sbjct: 60 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP--IIVV 117
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
NA E + + L +T + +I SA G+ + L
Sbjct: 118 ITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGF----------GVDELKN 167
Query: 1106 AILKYVP 1112
I+ +
Sbjct: 168 LIITTLN 174
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 78.5 bits (192), Expect = 9e-17
Identities = 42/206 (20%), Positives = 62/206 (30%), Gaps = 18/206 (8%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFL--DTPGHEAF 129
V +G D GKT L + ++ IT Y V N G+ L
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREA--------IAHAKISGVPLIVAINKIDKL 181
+ R VV VV + A + A + L++A NK D
Sbjct: 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121
Query: 182 D-INLDRIKQDLISE-QVIPEEYGGASPFISISAKTGV-----GINKLLENISLQAEILE 234
+ I+Q L E + A + S+ G + L+ E LE
Sbjct: 122 MAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLE 181
Query: 235 LKAPVTTPAKGVIIESRLDKGKGPVA 260
A G L+K +A
Sbjct: 182 CSAKGGRGDTGSADIQDLEKWLAKIA 207
Score = 33.8 bits (76), Expect = 0.097
Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 7/133 (5%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
+ D GKT L LL +G +R Q I DS+ I K S
Sbjct: 4 LFVGLCDSGKTLLFVRLL--TGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDLPGHE 58
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
+ V ++ + D + ALK ++ N
Sbjct: 59 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLIDSMALKNSPSLLIACN 116
Query: 1046 KIDRSNARPEWVV 1058
K D + A+ ++
Sbjct: 117 KQDIAMAKSAKLI 129
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 76.3 bits (187), Expect = 9e-17
Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 1113 VHKDNSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMN-----GPDDKPNK 1166
+ + L L + + +S G+ GR+ +G +KS Q V I G D
Sbjct: 26 IKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFI 85
Query: 1167 AKINQIRVFKGLDRVLVNEALSGDIVLITGIEE-ICIGSTICDPSKPNGLPML 1218
I ++ + G +++ +G+I+ + GI++ + T+ + + ++
Sbjct: 86 KAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVM 138
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 103
Score = 71.2 bits (174), Expect = 2e-15
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 1117 NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK 1176
+ P ++ ++ ++G++ R+ GR+K + G + + V
Sbjct: 5 FGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVR------LPHLYVPM 58
Query: 1177 GLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPM 1217
G D + V EA +G ++ + E + G + KP +
Sbjct: 59 GKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEV 99
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 72.8 bits (177), Expect = 5e-15
Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 14/170 (8%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHE--- 127
V I+G + GK++L + I S G T+ V + F+DT G
Sbjct: 11 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 70
Query: 128 ---------AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKI 178
+ D+VV+V+ A G+ Q + + G +V NK
Sbjct: 71 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKW 130
Query: 179 DKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228
D + + ++ + + SP I SA G I+++++ ++L
Sbjct: 131 DLVV-HREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 179
Score = 60.1 bits (144), Expect = 1e-10
Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 18/188 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
IK AI+ + GK+TL + +L + R +E+ + +F +
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
+ + V + D V++++DA +G Q + + + G +V
Sbjct: 69 ---KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVV 125
Query: 1043 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMI 1101
V NK D R + + T +KL +D+ P+I+TSA G+ N+
Sbjct: 126 VFNKWDLVVHREKRYDEFTKLFREKL----YFIDYSPLIFTSADKGW----------NID 171
Query: 1102 PLFEAILK 1109
+ +A+
Sbjct: 172 RMIDAMNL 179
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 66.4 bits (162), Expect = 6e-14
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 1315 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 1374
+ EP + V E G ++ LN R G + +E +V + +P + G+ +
Sbjct: 2 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV-IRAFVPLAEMFGYATDL 60
Query: 1375 ITLTRGTGLISHVFEEYAP 1393
+ T+G G F+ Y
Sbjct: 61 RSKTQGRGSFVMFFDHYQE 79
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 68.6 bits (166), Expect = 1e-13
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 24/177 (13%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF----------- 120
+ G + GK++L+ + V + G+T+ I +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLV-----------VAADDGVMPQTREAIAHAKISGV 169
+ + AK D+ VLV G +P E + +
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 170 PLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
P IVA+NK+DK+ + I + ++E+ FI ISAK G I +L I
Sbjct: 123 PTIVAVNKLDKIKNVQEVI--NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 177
Score = 49.7 bits (117), Expect = 5e-07
Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 20/193 (10%)
Query: 926 AIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
+ GK+TLI L + + I +++I G
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLID--AVEGPMPQTRFVTRKALKLGFK 1039
+ I+ +V ++ +I G +P + +L
Sbjct: 64 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123
Query: 1040 PIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGN 1099
IV VNK+D+ E + L +K ++D I SA G N
Sbjct: 124 TIVAVNKLDKIKNVQEVIN----FLAEKFEVPLSEIDKVFIPISAKFGD----------N 169
Query: 1100 MIPLFEAILKYVP 1112
+ L I + +
Sbjct: 170 IERLKNRIFEVIR 182
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 96
Score = 64.2 bits (156), Expect = 5e-13
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 1315 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 1374
L EP L V + G ++ L R G + +E E + +P ++ +
Sbjct: 2 LLEPIYRLKVLAPQERVGDVLSDLQARRGRILGME-QEGALSVVHAEVPLAEVLEYYKAL 60
Query: 1375 ITLTRGTGLISHVFEEYAP 1393
LT G G + F YA
Sbjct: 61 PGLTGGAGAYTLEFSHYAE 79
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 65.2 bits (158), Expect = 1e-12
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 5/157 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF--LDTPGHEAF 129
+ ++G GK+ LL + S I V N + DT G E F
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 64
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
+ + ++LV D +T I + ++ + D
Sbjct: 65 RTITTAYYRGAMGIILVY---DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + ++Q PFI SAK +N++ +
Sbjct: 122 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 158
Score = 38.6 bits (89), Expect = 0.002
Identities = 28/167 (16%), Positives = 50/167 (29%), Gaps = 19/167 (11%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
++K +I GK+ L+ + F + GI K I
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVE--DKF------------NPSFITTIGIDFKIKTVDIN 47
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
++ I DT G F ++L+ D + K +
Sbjct: 48 GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE 107
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
+ + + VV A D+ A ++L P I +SA +
Sbjct: 108 AQLLLVGNKSDMETRVVTA-----DQGEALAKELGIPFIESSAKNDD 149
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 64.0 bits (155), Expect = 4e-12
Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF--LDTPGHEAF 129
+ ++G GKT +L + + I + + I DT G E F
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 130 TAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
+ + ++LV + + I + V ++ N
Sbjct: 69 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN------KCD 122
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
K+ + E+ F+ SAK + + +
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163
Score = 40.9 bits (95), Expect = 4e-04
Identities = 24/171 (14%), Positives = 44/171 (25%), Gaps = 26/171 (15%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
L K +I GKT ++ F GI + ++
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFSE--DAFNSTFISTI------------GIDFKIRTIELD 51
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG----PMPQTRFVTRKALKLG 1037
++ I DT G F ++L+ D + +
Sbjct: 52 GKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD 111
Query: 1038 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
+ +++ NK D ++ R D + TSA
Sbjct: 112 VEKMILGNKCDVNDKRQVSKERGEKLALD--------YGIKFMETSAKANI 154
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 64.4 bits (155), Expect = 4e-12
Identities = 24/172 (13%), Positives = 56/172 (32%), Gaps = 14/172 (8%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE 127
V G + GK+S L+ + + + + G
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 74
Query: 128 AFTAMRARG------------AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAI 175
A + + +V+++ + ++ I A S + ++V +
Sbjct: 75 AEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
K DKL + + +++ E V + G + S+ G++KL + +
Sbjct: 135 TKADKLASGARKAQLNMVREAV--LAFNGDVQVETFSSLKKQGVDKLRQKLD 184
Score = 33.2 bits (74), Expect = 0.15
Identities = 15/165 (9%), Positives = 42/165 (25%), Gaps = 8/165 (4%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
I+ A + GK++ ++ L Q R ++ + + + +
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
+ ++ + + + L++ + + V
Sbjct: 77 VPEEMKRKWQRALGEYLEKRQSL------QGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV 130
Query: 1043 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
+V + + + A D V S+L
Sbjct: 131 LVLLTKADKLASGARKAQLNMVREAVLAFNG--DVQVETFSSLKK 173
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 63.7 bits (154), Expect = 5e-12
Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF--LDTPGHEAF 129
+ ++G+ GKT L+ + + I V N + DT G E F
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
Query: 130 TAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
++ + + ++L +P+ I + V ++ NKID
Sbjct: 68 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID------ 121
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
++++ ++ ++ SAK + KL ++
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 162
Score = 38.3 bits (88), Expect = 0.002
Identities = 28/170 (16%), Positives = 44/170 (25%), Gaps = 24/170 (14%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
L K +I + GKT L+ + G F Q G+ K I
Sbjct: 5 LFKIVLIGNAGVGKTCLVRRFTQ--GLFPPGQGAT------------IGVDFMIKTVEIN 50
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLL---LIDAVEGPMPQTRFVTRKALKLGF 1038
++ I DT G F + + ++L + +
Sbjct: 51 GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK 110
Query: 1039 KPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
V+V R E + E D + TSA
Sbjct: 111 VITVLVGNKIDLAERREVS-------QQRAEEFSEAQDMYYLETSAKESD 153
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 63.7 bits (154), Expect = 5e-12
Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 6/165 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAF 129
+ I+G GK+SLL A I + + + DT G E F
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 69
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
+ + V+LV + + + +N + I+ + +
Sbjct: 70 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE 129
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILE 234
D ++ FI SAKT G+ E + +I++
Sbjct: 130 VDRNEGLKFARKHS--MLFIEASAKTCDGVQCAFEELV--EKIIQ 170
Score = 43.3 bits (101), Expect = 6e-05
Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 28/196 (14%)
Query: 916 DENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFS 975
DE++ +K II GK++L+ TF G+
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLRFTD--DTFDPELAATI------------GVDFKV 46
Query: 976 KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK 1035
K S++ N ++ I DT G F V+L+ D
Sbjct: 47 KTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNE-L 105
Query: 1036 LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 1095
+ + + N + + + K + I SA
Sbjct: 106 ETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA---RKHSMLFIEASAKTCD------- 155
Query: 1096 RQGNMIPLFEAILKYV 1111
+ FE +++ +
Sbjct: 156 ---GVQCAFEELVEKI 168
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 63.6 bits (153), Expect = 7e-12
Identities = 28/168 (16%), Positives = 65/168 (38%), Gaps = 14/168 (8%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYI--RKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG 125
+ I+G + GK++LL+ + +K ++ +A I + + +I
Sbjct: 4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
Query: 126 HE------AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAK-ISGVPLIVAINKI 178
H +A + + D+ +++ + E + + P+I+A+NK+
Sbjct: 64 HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKV 123
Query: 179 DKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
D + K DL+ + ISA+TG+ ++ + +
Sbjct: 124 D-----NVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 166
Score = 40.9 bits (94), Expect = 4e-04
Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 24/187 (12%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AI+ + GK+TL++ LL Q +I +R + T +
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQ------KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPG 62
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
+ + V+ V+ +++ V K + I+ VN
Sbjct: 63 LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDD-EMVLNKLREGKAPVILAVN 121
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
K+D + + + F ++ SA G N+ +
Sbjct: 122 KVDNVQEKADLLPHLQFLASQMNFL-------DIVPISAETGL----------NVDTIAA 164
Query: 1106 AILKYVP 1112
+ K++P
Sbjct: 165 IVRKHLP 171
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 61.6 bits (149), Expect = 7e-12
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGL 1178
N PL + Y+G++ R+ SG + S V K K ++ ++
Sbjct: 24 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVARLLRMHAN 79
Query: 1179 DRVLVNEALSGDIVLITGIEEICIGSTICDPSKPN 1213
R V E +GD+ + G++E G T+ P
Sbjct: 80 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPR 114
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 117
Score = 61.2 bits (148), Expect = 1e-11
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKER-VRLEYRIPSRGLIGFQNEFI 1375
EP + + E G I LN + G + + E ++ +P GF E
Sbjct: 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELR 60
Query: 1376 TLTRGTGLISHVFEEYAPFY 1395
T G VF+ ++
Sbjct: 61 QATGGQAFPQMVFDHWSTLG 80
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 61.1 bits (147), Expect = 3e-11
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 21/165 (12%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHGSITFLDTPG----- 125
+ I+G + GK++LL+ + + ++ G T+ + + +V +DT G
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62
Query: 126 ---HEAFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
E R + DIV+ V+ A + + R+ + I L
Sbjct: 63 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILER-----------IKNKRYL 111
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + I+E+ I + G + ISA G G+ KL E+I
Sbjct: 112 VVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 156
Score = 41.1 bits (95), Expect = 3e-04
Identities = 31/187 (16%), Positives = 66/187 (35%), Gaps = 29/187 (15%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
++ I+ + GK+TL++ LL +++ I I + I I +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLL------NEDRAIVTDIPGTTRDVISEEIVI--RGILFRI 52
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
T +T + G +ER L ++ +++ ++ P + ++ K +
Sbjct: 53 VDTAGVRSETNDLVERLG-IERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYL 111
Query: 1043 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 1102
VV VD + ++ + D ++ SAL G +
Sbjct: 112 VVI----------NKVDVVEKINEEEIKNKLGTDRHMVKISALKGE----------GLEK 151
Query: 1103 LFEAILK 1109
L E+I +
Sbjct: 152 LEESIYR 158
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 61.2 bits (147), Expect = 3e-11
Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ +G + GKT+LL ++ + T H + + + T D GH
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR 59
Query: 132 MRARGAKVTDIVVLVVAADD-----GVMPQTREAIAHAKISGVPLIVAINKIDKL-DINL 185
+ + +V +V A D + A++ VP ++ NKID ++
Sbjct: 60 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE 119
Query: 186 DRIKQDLISEQVIPEEYGGAS---PFISISAKTGVGINKLLENIS 227
++ L + S G + + +S
Sbjct: 120 AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 61.4 bits (148), Expect = 4e-11
Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 14/171 (8%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN--HGSITFLDTPGHEAF 129
V ++G GK++LL + I ++ + DT G E +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 130 TAMRARGAKVTDIVVLVVAADD----GVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
+ + + +LV + + + + S + +++ NK D
Sbjct: 67 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD------ 120
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELK 236
R + + +++ FI SA + + +NI EI +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL--TEIYRIV 169
Score = 36.4 bits (83), Expect = 0.012
Identities = 31/171 (18%), Positives = 52/171 (30%), Gaps = 26/171 (15%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
L K +I GK+ L+ R F G+ +++ ++
Sbjct: 4 LFKVVLIGDSGVGKSNLLSRFTR--NEFNLESKSTI------------GVEFATRSIQVD 49
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP- 1040
+ I DT G + LL+ D + + K L+
Sbjct: 50 GKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN 109
Query: 1041 ---IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
++V NK D + R +A A E+ + I TSAL
Sbjct: 110 IVIMLVGNKSDLRHLRAVPTDEA--------RAFAEKNNLSFIETSALDST 152
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 60.4 bits (145), Expect = 8e-11
Identities = 28/178 (15%), Positives = 55/178 (30%), Gaps = 10/178 (5%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG----- 125
V ++G+ + GK+SLL + + + + V+ T D PG
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 126 HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
E + VL+ D P ++ + +
Sbjct: 64 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPA 243
D ++++ + G + +SA TG G+ L E + ++ P P
Sbjct: 124 DLLEEEAVKALADALAREGL-AVLPVSALTGAGLPALKEAL---HALVRSTPPPEMPK 177
Score = 30.0 bits (66), Expect = 1.7
Identities = 26/196 (13%), Positives = 58/196 (29%), Gaps = 41/196 (20%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
++ + + GK++L+ + R +
Sbjct: 5 GLVGYPNAGKSSLLAAMTRA---------------HPKIAPYPFTTLSPNLGVVEVSEEE 49
Query: 986 RINIIDTPGHADFGGEVERI-------LSMVDNVLLLIDAVEGPMPQTRFVTRKAL--KL 1036
R + D PG + E + + ++ +L ++DA + P+ + ++
Sbjct: 50 RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDP 109
Query: 1037 GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKAR 1096
+ +++ + E V A D + V+ SAL G
Sbjct: 110 ALLRRPSLVALNKVDLLEEEAVKALADAL-------AREGLAVLPVSALTGA-------- 154
Query: 1097 QGNMIPLFEAILKYVP 1112
+ L EA+ V
Sbjct: 155 --GLPALKEALHALVR 168
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 58.2 bits (139), Expect = 5e-10
Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 20/177 (11%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHI---------GAYNVVTNHGSITFL 121
V I+G + GK++L + + K + G+T+ + +V G
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
+ + + D+V+ VV G+ + + S V I+ NK + L
Sbjct: 63 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS--LQAEILELK 236
+K +L S G I +SA+ + ++ +LE I L+ + L+L+
Sbjct: 123 REFEREVKPELYSL--------GFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLE 171
Score = 42.8 bits (99), Expect = 7e-05
Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 26/187 (13%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
I+ + GK+TL + L+++ +++ R + +E C + N
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
I D VL ++D G + + K I+V N
Sbjct: 64 DIISQKMKEVTLNMIR------EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVAN 117
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
K + V + L I SA H N+ + E
Sbjct: 118 KAENLREFEREVKPELYSLGFG----------EPIPVSAEHNI----------NLDTMLE 157
Query: 1106 AILKYVP 1112
I+K +
Sbjct: 158 TIIKKLE 164
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 56.6 bits (135), Expect = 1e-09
Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 10/164 (6%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+T++G GKT+ ++ I F+E T + + +I D G F +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQ--FNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 62
Query: 132 MRARGAKVTDIVVLVVA-----ADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
M R + +V +V + + + ++ G+P++V NK D +
Sbjct: 63 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE 122
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230
+ + ++ I + SIS K I+ L+ + +
Sbjct: 123 KELIEKMNLSAIQDR---EICCYSISCKEKDNIDITLQWLIQHS 163
Score = 36.6 bits (83), Expect = 0.008
Identities = 18/189 (9%), Positives = 50/189 (26%), Gaps = 28/189 (14%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
++ ++ GKTT ++ + G F ++ + I ++ +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIAS--GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
+ + + + + + K G +V
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEAS-----------KNELHNLLDKPQLQGIPVLV 109
Query: 1043 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 1102
+ NK D A E + +L + + + S N+
Sbjct: 110 LGNKRDLPGALDEKELIEKMNL-----SAIQDREICCYSISCKEKD----------NIDI 154
Query: 1103 LFEAILKYV 1111
+ ++++
Sbjct: 155 TLQWLIQHS 163
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 56.7 bits (135), Expect = 2e-09
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 15/170 (8%)
Query: 70 PIVTIMGHVDHGKTSLLDYIR--KTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG-- 125
P + + G + GK+S ++ + K S G TQ + Y + +
Sbjct: 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83
Query: 126 --------HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
+ VV +V + K G+P+IV K
Sbjct: 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATK 143
Query: 178 IDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
DK+ ++ + + I S++T G ++ I
Sbjct: 144 ADKIPKGKWDKHAKVVRQTL---NIDPEDELILFSSETKKGKDEAWGAIK 190
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 56.0 bits (134), Expect = 2e-09
Identities = 25/165 (15%), Positives = 47/165 (28%), Gaps = 6/165 (3%)
Query: 72 VTIMGHVDHGKTSLLDYI--RKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129
+ I+G+ GKTS L F GI + + DT G E +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
+ + +L+ + + + + + + D
Sbjct: 68 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV 127
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILE 234
+ + + G F SAK + + + E L I E
Sbjct: 128 VSSERGRQLADHLG--FEFFEASAKDNINVKQTFE--RLVDVICE 168
Score = 42.2 bits (98), Expect = 1e-04
Identities = 22/167 (13%), Positives = 38/167 (22%), Gaps = 18/167 (10%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
+ K II + GKT+ + +F GI K
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYAD--DSFTPAFVST------------VGIDFKVKTIYRN 50
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
++ I DT G + +L+ D +K
Sbjct: 51 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN 110
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
V + + ++ + L F SA
Sbjct: 111 AQVLLVGNKCDMEDE----RVVSSERGRQLADHLGFEFFEASAKDNI 153
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 55.7 bits (133), Expect = 3e-09
Identities = 23/165 (13%), Positives = 44/165 (26%), Gaps = 6/165 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAF 129
++G+ GK+ LL + I G+ + + DT G E F
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
++ + +LV + I +
Sbjct: 68 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE 127
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILE 234
+ +E F+ SA TG + + + +IL
Sbjct: 128 VTFLEASRFAQENE--LMFLETSALTGENVEEAFVQCA--RKILN 168
Score = 38.7 bits (89), Expect = 0.002
Identities = 29/171 (16%), Positives = 50/171 (29%), Gaps = 26/171 (15%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
L K +I + GK+ L+ + F+ + N + SK ++
Sbjct: 5 LFKFLVIGNAGTGKSCLLHQFIE--KKFKDDSNHTIGVE------------FGSKIINVG 50
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP- 1040
++ I DT G F LL+ D ++
Sbjct: 51 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN 110
Query: 1041 ---IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
I+ NK D R F + ++ + + TSAL G
Sbjct: 111 IVIILCGNKKDLDADREVT--------FLEASRFAQENELMFLETSALTGE 153
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 55.3 bits (132), Expect = 5e-09
Identities = 29/165 (17%), Positives = 49/165 (29%), Gaps = 9/165 (5%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPG-HEAF 129
V ++G GK++LL + ++ T V T+ G S D PG E
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAK---ISGVPLIVAINKIDKLDINLD 186
G + + + E L ++ + +
Sbjct: 64 HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 123
Query: 187 RIKQDLISEQVIPEE----YGGASPFISISAKTGVGINKLLENIS 227
K D+ E P ISA T G+ +LL ++
Sbjct: 124 ANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVA 168
Score = 33.0 bits (74), Expect = 0.18
Identities = 26/201 (12%), Positives = 56/201 (27%), Gaps = 39/201 (19%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSK-NCSIEYNG 984
++ GK+TL+ + +I T+ +G
Sbjct: 5 GLVGFPSVGKSTLLSVVSSAKP----------------KIADYHFTTLVPNLGMVETDDG 48
Query: 985 TRINIIDTPGH----ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 1040
+ D PG G + L ++ +++ ++ + R L + +
Sbjct: 49 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQEL 108
Query: 1041 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEE-----QLDFPVIYTSALHGYANENSKA 1095
R RP+ +V D+ + E D+PV SA+
Sbjct: 109 S---EYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTRE------- 158
Query: 1096 RQGNMIPLFEAILKYVPVHKD 1116
+ L + + +
Sbjct: 159 ---GLRELLFEVANQLENTPE 176
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 55.1 bits (131), Expect = 5e-09
Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 3/162 (1%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH 126
+ V I+G + GK++LL+ + V S T+ + I F+DTPG
Sbjct: 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 63
Query: 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
L + R + + + + +
Sbjct: 64 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 123
Query: 187 RIKQDLISEQVI--PEEYGGASPFISISAKTGVGINKLLENI 226
++ E+ + E + +SA + +L ++
Sbjct: 124 KLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADL 165
Score = 36.3 bits (82), Expect = 0.013
Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 25/189 (13%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AI+ + GK+TL+++LL + ++ RGI + + +
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPR-------PQTTRKRLRGILTEGRRQIVFVDTP 61
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
++ EV L+ V+ V+ ++D P P+ V R L K +++
Sbjct: 62 GLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV 121
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
A+ + E + SAL + L
Sbjct: 122 GNKLDAAKYPEEAMKAYH--------ELLPEAEPRMLSALDER----------QVAELKA 163
Query: 1106 AILKYVPVH 1114
+L +P
Sbjct: 164 DLLALMPEG 172
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 54.3 bits (129), Expect = 8e-09
Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 11/161 (6%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ ++G + GKT++L +V + T + + D G ++ +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDV---DTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 61
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQT-----REAIAHAKISGVPLIVAINKIDKLDINLD 186
+ TD ++ VV + D Q + + +++G L++ NK D
Sbjct: 62 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 121
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
Q+ + I + SA TG + ++ +
Sbjct: 122 NAIQEALELDSIRSHH---WRIQGCSAVTGEDLLPGIDWLL 159
Score = 27.7 bits (60), Expect = 6.7
Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 29/170 (17%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
++ ++ + GKTT++ + E T+ ++E+
Sbjct: 3 LRLLMLGLDNAGKTTILKKF-------------------NGEDVDTISPTLGFNIKTLEH 43
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT-----RFVTRKALKLG 1037
G ++NI D G D ++ ++D+ + Q + + + G
Sbjct: 44 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG 103
Query: 1038 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
++ NK D A + +L + + SA+ G
Sbjct: 104 ATLLIFANKQDLPGALSCNAIQEALELDSI-----RSHHWRIQGCSAVTG 148
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 54.1 bits (129), Expect = 1e-08
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 5/158 (3%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF--LDTPGHEA 128
V ++G GKT LL + + + + + + + DT G E
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 68
Query: 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI 188
F ++ + ++L+ + +A VA+ + +
Sbjct: 69 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER 128
Query: 189 KQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + +EYG PF+ SAKTG+ ++ I
Sbjct: 129 VVKREDGEKLAKEYG--LPFMETSAKTGLNVDLAFTAI 164
Score = 32.9 bits (74), Expect = 0.16
Identities = 30/190 (15%), Positives = 50/190 (26%), Gaps = 27/190 (14%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
K ++ GKT L+ G F + GI +K ++
Sbjct: 6 AFKVMLVGDSGVGKTCLLVRFKD--GAF-----------LAGTFISTVGIDFRNKVLDVD 52
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
++ + DT G F +LLL D + F +A
Sbjct: 53 GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYD----VTNKASFDNIQAWLTEIHEY 108
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
+ + ++ P + TSA G N+
Sbjct: 109 AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGL----------NVD 158
Query: 1102 PLFEAILKYV 1111
F AI K +
Sbjct: 159 LAFTAIAKEL 168
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 53.5 bits (127), Expect = 2e-08
Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 15/177 (8%)
Query: 67 VRAPIVTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG 125
+R +V I+G GKT LL + ++ V + DT G
Sbjct: 1 IRKKLV-IVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 59
Query: 126 HEAFTAMRARGAKVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDK 180
E + +R TD++++ + D + + + + H VP+I+ NK D
Sbjct: 60 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 118
Query: 181 LDINLDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLENISLQA 230
+ R + + ++ + E G GA ++ SAKT G+ ++ E + A
Sbjct: 119 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 52.3 bits (124), Expect = 5e-08
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 5/158 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ I+G GKT++L ++ T + + + D G +
Sbjct: 20 ILILGLDGAGKTTILYRLQIG---EVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRP 76
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQT--REAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
T V+ VV + D T +E + + + +K D
Sbjct: 77 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA 136
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
++ E + E + ++ SA G GI + L+ +
Sbjct: 137 SEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 174
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 52.0 bits (123), Expect = 5e-08
Identities = 27/161 (16%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ ++G GKT++L ++ +V + T V + S T D G +
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 132 MRARGAKVTDIVVLVVAADD-----GVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
+ + T ++ VV ++D + +A ++ L+V NK D +
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
++ + + + A +G G+ + L+ +S
Sbjct: 120 A---EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 157
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 51.4 bits (122), Expect = 7e-08
Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFL--DTPGHEAF 129
I+G + GK+ LL + + I G + + I DT G E F
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66
Query: 130 TAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
A+ + ++V + + +I+ NK D
Sbjct: 67 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD 126
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
++ + EE G F+ SAKTG +
Sbjct: 127 VTYEEA----KQFAEENG--LLFLEASAKTGENVEDAFLEA 161
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 50.3 bits (119), Expect = 2e-07
Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 11/161 (6%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ ++G + GKT+LL + ++ TQ +V + + D G
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 75
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQTREAI-----AHAKISGVPLIVAINKIDKLDINLD 186
+ TDI++ V+ + D + K+S VP+++ NK D L
Sbjct: 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 135
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
+ ++ I + S SA TG G+ + +
Sbjct: 136 SEIAEGLNLHTIRDR---VWQIQSCSALTGEGVQDGMNWVC 173
Score = 31.1 bits (69), Expect = 0.59
Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 39/194 (20%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
++ ++ + GKTTL+ L + + T S++
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITP-------------------TQGFNIKSVQS 57
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQ-----TRFVTRKALKLG 1037
G ++N+ D G D ++ +ID+ + + + +
Sbjct: 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC 117
Query: 1038 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQ 1097
++ NK D A P + +L T + + SAL G
Sbjct: 118 VPVLIFANKQDLLTAAPASEIAEGLNL-----HTIRDRVWQIQSCSALTGE--------- 163
Query: 1098 GNMIPLFEAILKYV 1111
+ + K V
Sbjct: 164 -GVQDGMNWVCKNV 176
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 49.7 bits (117), Expect = 2e-07
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 3/156 (1%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
V I G + GK+SLL+ + + ++ G T+ + ++ + + +DT G +
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 63
Query: 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQ 190
R + A M A P +A R K
Sbjct: 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITV-VRNKA 122
Query: 191 DLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
D+ E + E G I +SA+TG G++ L ++
Sbjct: 123 DITGETLGMSEVNGH-ALIRLSARTGEGVDVLRNHL 157
Score = 33.2 bits (74), Expect = 0.11
Identities = 19/165 (11%), Positives = 43/165 (26%), Gaps = 19/165 (11%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
+K I + GK++L++ L + A I+ + +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGR----------EAAIVTDIAGTTRDVLREHIHIDGMPL 51
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
+ + +ER ++ ++ V+G + +
Sbjct: 52 HIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA 111
Query: 1043 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
+ N D+ + E +I SA G
Sbjct: 112 KLPITVVRN---------KADITGETLGMSEVNGHALIRLSARTG 147
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 50.1 bits (118), Expect = 3e-07
Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 17/170 (10%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ +G + GKT+LL ++ + T H + + + T D GH
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELTIAGMTFTTFDLGGHIQARR 72
Query: 132 M-RARGAKVTDIVVLVVAADDGVMPQTREAIA----HAKISGVPLIVAINKIDK-LDINL 185
+ + + IV LV AD + +++E + I+ VP+++ NKID+ I+
Sbjct: 73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE 132
Query: 186 DRIKQDLISEQVIPEEYGGAS--------PFISISAKTGVGINKLLENIS 227
+R+++ + + S G + ++
Sbjct: 133 ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 182
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 49.2 bits (116), Expect = 6e-07
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 5/163 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
V I+G + GKT++L VV + T +V N+ D G E+ +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQESLRS 74
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS--GVPLIVAINKIDKLDINLDRIK 189
T+ V++VV + D + ++ + + +K D+
Sbjct: 75 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV 134
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEI 232
++ + + A TG G+ + LE + + +I
Sbjct: 135 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 177
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 51.3 bits (122), Expect = 6e-07
Identities = 31/267 (11%), Positives = 73/267 (27%), Gaps = 21/267 (7%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
+ A+ GK++ I+ L + + ++
Sbjct: 57 LNVAVTGETGSGKSSFINTLR------------GIGNEEEGAAKTGVVEVTMERHPYKHP 104
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDN---VLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
N + D PG + L + +I + + + + +
Sbjct: 105 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKE 164
Query: 1040 PIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL--DFPVIYTSALHGYANENSKARQ 1097
V K+D TFD L F + + N
Sbjct: 165 FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 224
Query: 1098 GNMIPLFEAILKYVPVHKDN----SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153
+ L + ++ +P++K + S + +I + +I + + + +
Sbjct: 225 YDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPS 284
Query: 1154 VVIMNGPDDKPNKAKINQIRVFKGLDR 1180
+ + D + K + R G+D
Sbjct: 285 LTFLLDSDLETLKKSMKFYRTVFGVDE 311
Score = 46.7 bits (110), Expect = 2e-05
Identities = 31/237 (13%), Positives = 69/237 (29%), Gaps = 36/237 (15%)
Query: 64 ESLVRAPI-VTIMGHVDHGKTSLLDYIR-----KTNVVFSEAGGITQHIGAYNVVTNHGS 117
+ + + + V + G GK+S ++ +R + + +T N +
Sbjct: 50 KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPYKHPNIPN 108
Query: 118 ITFLDTPG-----HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI 172
+ F D PG T + D +++ + + +
Sbjct: 109 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIII--SATRFKKNDIDIAKAISMMKKEFY 166
Query: 173 VAINKIDK-LDINLDRIKQDLISEQVIPE----------EYGGASP---FISISAKTGVG 218
K+D + D Q E+V+ + E G A P +S
Sbjct: 167 FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYD 226
Query: 219 INKLLENI-----SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLR 270
L++ + + + P T + +IE + K + + +
Sbjct: 227 FPVLMDKLISDLPIYKRHNFMVSLPNITDS---VIEKKRQFLKQRIWLEGFAADLVN 280
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 46.4 bits (109), Expect = 6e-06
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF--LDTPGHEAF 129
+ ++G+ GK+ LL I V + ++ DT G E F
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68
Query: 130 TAMRARGAKVTDIVVLVVAAD----DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
+ + + + +++V + + I S V ++ NK D D +
Sbjct: 69 RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV 128
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ PF+ SA + +
Sbjct: 129 VEY------DVAKEFADANKMPFLETSALDSTNVEDAFLTM 163
Score = 31.4 bits (70), Expect = 0.51
Identities = 26/198 (13%), Positives = 56/198 (28%), Gaps = 28/198 (14%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
L K +I + GK+ L+ T+ +N+ G+ K ++
Sbjct: 6 LFKLLLIGNSGVGKSCLLLRFSD--DTY------------TNDYISTIGVDFKIKTVELD 51
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
++ I DT G F ++++ D + + + +
Sbjct: 52 GKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST 111
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
V+ + + +D + P + TSAL N+
Sbjct: 112 VLKLLVGNKCDLKDK----RVVEYDVAKEFADANKMPFLETSALDST----------NVE 157
Query: 1102 PLFEAILKYVPVHKDNSN 1119
F + + + N
Sbjct: 158 DAFLTMARQIKESMSQQN 175
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 46.2 bits (108), Expect = 7e-06
Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 16/176 (9%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
++G GKT LL Y + V ++ DT G E +
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD 67
Query: 131 AMRARGAKVTDIVVLVVAADDG-----VMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
+R TD+ ++ + V + + H P+I+ K+D D
Sbjct: 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKD 126
Query: 186 DRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLENISLQAEILE 234
K I G GA ++ SA T G+ + + +L
Sbjct: 127 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD--EAIRAVLC 180
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 45.4 bits (106), Expect = 1e-05
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 18/177 (10%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS---ITFLDTPGHEA 128
++G GKT LL + N F E T VT G + DT G E
Sbjct: 12 CVVVGDGAVGKTCLL--MSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 129 FTAMRARGAKVTDIVVLVVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDIN 184
+ +R +TD+ ++ + + + VP ++ +ID D
Sbjct: 70 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 129
Query: 185 LDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLENISLQAEILE 234
+ + + E+ I E G GA ++ SA T G+ + + IL
Sbjct: 130 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE--AIIAILT 184
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 44.7 bits (104), Expect = 1e-05
Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 11/161 (6%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ I+G GKT++L ++ VV + T V + D G +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTT---IPTIGFNVETVTYKNLKFQVWDLGGLTSIRP 64
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQTR-----EAIAHAKISGVPLIVAINKIDKLDINLD 186
TD V+ VV + D + ++ L+V NK D
Sbjct: 65 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ---A 121
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
++ + +P SA G G+++ +E +
Sbjct: 122 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 42.0 bits (97), Expect = 1e-04
Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 10/170 (5%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE----AGGITQHIGAYNVVTNHGSITFLDTPGHE 127
+ ++G GK+S++ +R + F+E G + + DT G E
Sbjct: 6 LVLLGEAAVGKSSIV--LRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
F ++ + ++V + R + I+ +K+D+ +
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELK 236
++ + E+ F SAKTG +N + I E + LK
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI---GEKIPLK 170
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 42.2 bits (98), Expect = 1e-04
Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 15/168 (8%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG------------SIT 119
+ +G GKT+ L + VV N +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67
Query: 120 FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKID 179
DT G E F ++ + +L+ + +
Sbjct: 68 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLI 127
Query: 180 KLDINLDRIKQDLISE-QVIPEEYGGASPFISISAKTGVGINKLLENI 226
+L ++ + + + ++YG P+ SA TG + K +E +
Sbjct: 128 GNKADLPDQREVNERQARELADKYG--IPYFETSAATGQNVEKAVETL 173
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 41.1 bits (95), Expect = 3e-04
Identities = 27/161 (16%), Positives = 61/161 (37%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
V ++G GK++L ++ V E + + I LDT G E +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 131 AMRARGAKVTDIVVLVVAADDGVMPQT-----REAIAHAKISGVPLIVAINKIDKLDINL 185
A+R + + + V + + + + + VP ++ NK D D
Sbjct: 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 126
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+++ + +++ ++ SAKT ++K+ ++
Sbjct: 127 VSVEEA----KNRADQWN--VNYVETSAKTRANVDKVFFDL 161
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 40.7 bits (94), Expect = 4e-04
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
V ++G GK++L ++ T + + + V ++ + LDT G E F
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 131 AMRARGAKVTDIVVLVVAADDGVM-----PQTREAIAHAKISGVPLIVAINKIDKLDINL 185
+MR K +LV + + P + I + VP+I+ NK+D
Sbjct: 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE 125
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + + EE+G PF+ SAK+ +++L I
Sbjct: 126 VSSSEG----RALAEEWG--CPFMETSAKSKTMVDELFAEI 160
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 40.8 bits (94), Expect = 5e-04
Identities = 34/173 (19%), Positives = 53/173 (30%), Gaps = 16/173 (9%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFL---DTPGHEA 128
++G GKT LL I T F T V G L DT G E
Sbjct: 6 CVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 129 FTAMRARGAKVTDIVVLVVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDIN 184
+ +R TD+ ++ + + P ++ +ID D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 185 LDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLENISLQA 230
K ++ I E A ++ SA T G+ + + L A
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 40.1 bits (92), Expect = 7e-04
Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 13/169 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEA-----GGITQHIGAYNVVTNHGSITFLDTPGH 126
V I+G GKTSL+ R N +S+ G ++ DT G
Sbjct: 5 VIILGDSGVGKTSLM--HRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 127 EAFTAMRARGAKVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
E F ++ + D VLV + + E + HA ++ + +K+
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230
D + S Q + + G P SAK + ++ E I+ A
Sbjct: 123 DAEESKKIVSEKSAQELAKSLG-DIPLFLTSAKNAINVDTAFEEIARSA 170
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 39.5 bits (91), Expect = 0.001
Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFL----DTPGHE 127
I+G GK+ LL ++ T+ F +T + + N DT G E
Sbjct: 6 YIIIGDTGVGKSCLL--LQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDI 183
+F ++ + +LV E S + +++ NK D
Sbjct: 64 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD---- 119
Query: 184 NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
++D+ E+ F+ SAKT + + N
Sbjct: 120 --LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 160
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 37.8 bits (86), Expect = 0.003
Identities = 21/155 (13%), Positives = 42/155 (27%), Gaps = 1/155 (0%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
V ++G GK++L + + V S+ D +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW 63
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQD 191
+ + D V+V + D + + + +L R ++
Sbjct: 64 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 123
Query: 192 LISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ E FI SA + L E +
Sbjct: 124 SVDEGRACAVVFDC-KFIETSAALHHNVQALFEGV 157
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 37.2 bits (85), Expect = 0.006
Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 15/163 (9%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSI--TFLDTPGHEAF 129
+ ++G GKT++L + +G + ++ D G +
Sbjct: 15 ILMLGLDAAGKTTIL--YKLKLGQSVT---TIPTVGFNVETVTYKNVKFNVWDVGGQDKI 69
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQT-----REAIAHAKISGVPLIVAINKIDKLDIN 184
+ T ++ VV D I ++ +++ NK D D
Sbjct: 70 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 129
Query: 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
Q+ + I + A +G G+ + L ++
Sbjct: 130 KPHEIQEKLGLTRIRDR---NWYVQPSCATSGDGLYEGLTWLT 169
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 37.0 bits (84), Expect = 0.007
Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 8/164 (4%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ I+G+ GK+SL I+ F ++ T ++T +G L
Sbjct: 7 IAILGYRSVGKSSLT--IQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQD 191
+ + + ++ E I + ++ + L N + +
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 192 LIS----EQVIPEEYGGASPFISISAKTGVGINKLLENISLQAE 231
+ + + E + + F+ SAK + I L+AE
Sbjct: 125 RVISYEEGKALAESWN--AAFLESSAKENQTAVDVFRRIILEAE 166
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 36.2 bits (82), Expect = 0.011
Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 8/159 (5%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEA----GGITQHIGAYNVVTNHGSITFLDTPGHE 127
+ ++G GK+SL+ +R F E G + DT G E
Sbjct: 9 LVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
+ ++ + ++V + + + I ++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 188 IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
D Q ++ F+ SAKT + +N++ I
Sbjct: 127 RAVDFQEAQSYADDNS--LLFMETSAKTSMNVNEIFMAI 163
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 36.1 bits (82), Expect = 0.012
Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 13/161 (8%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
+ ++G GK++L I+ V + + + + LDT G E ++
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 131 AMRARGAKVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
AMR + + + + V A + + + + VP+++ NK D +
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTV 125
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + ++ P+I SAKT G+ +
Sbjct: 126 ESRQAQDLARSY-------GIPYIETSAKTRQGVEDAFYTL 159
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 77
Score = 33.7 bits (77), Expect = 0.016
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1248 QIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRV 1306
++ L ++ + L++ + + + + G GELHL E ++ G E+ S P+V
Sbjct: 20 RLGEALRKLLEEDPSLKLERQEETGELL-LWGHGELHLATAKERLQDYGVEVEFSVPKV 77
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 35.4 bits (80), Expect = 0.022
Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 2/156 (1%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
+ ++G GK++L +I+ V + + + + LDT G E F
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG 67
Query: 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQ 190
AMR + + + +LV + D + + + +LD +Q
Sbjct: 68 AMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ 127
Query: 191 DLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
E ++ SAK + +++ +
Sbjct: 128 VTQEEGQQLARQLKV-TYMEASAKIRMNVDQAFHEL 162
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 35.3 bits (80), Expect = 0.024
Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 10/167 (5%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEA----GGITQHIGAYNVVTNHGSITFLDTPGHE 127
V ++G GKTSL+ +R F++ G + N+ ++ DT G E
Sbjct: 6 VVLLGEGCVGKTSLV--LRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
F A+ + ++ +LV D Q + + + + +
Sbjct: 64 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123
Query: 188 IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILE 234
+ + E G + SAK GI +L ++ ++E
Sbjct: 124 RHVSIQEAESYAESVG--AKHYHTSAKQNKGIEELFLDLC--KRMIE 166
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 34.6 bits (78), Expect = 0.040
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 14/177 (7%)
Query: 67 VRAPIVTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG 125
V+ IV ++G GKT+LL + + + ++ + T ++ DT G
Sbjct: 1 VKCKIV-VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 59
Query: 126 HEAFTAMRARGAKVTDIVVLVVAADDGV----MPQTREAIAHAKISGVPLIVAINKIDKL 181
+ +R +D V++ + + + +++ K D
Sbjct: 60 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 119
Query: 182 DINLDRIKQDLISEQVIPEEYG-------GASPFISISAKTGV-GINKLLENISLQA 230
++ + + + G GA+ +I SA + + +L
Sbjct: 120 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 79
Score = 31.4 bits (71), Expect = 0.11
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 1249 IKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE--GYELSVSRP 1304
+ L K++ + + + + V+G GELHL I ++++ + G L +S P
Sbjct: 23 LVEGLKRLSKSDPCVLTYMS--ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPP 78
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 33.5 bits (76), Expect = 0.13
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 1009 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKID 1048
VD V+L++ P T + + A K + ++V+NK+D
Sbjct: 11 VDQVILVVTVKM-PETSTYIIDKFLVLAEKNELETVMVINKMD 52
Score = 31.2 bits (70), Expect = 0.69
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 141 DIVVLVVAADDGVMPQTREA-----IAHAKISGVPLIVAINKIDKLD 182
D V+LVV P+T + A+ + + ++ INK+D D
Sbjct: 12 DQVILVVTVKM---PETSTYIIDKFLVLAEKNELETVMVINKMDLYD 55
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 32.7 bits (73), Expect = 0.18
Identities = 17/169 (10%), Positives = 52/169 (30%), Gaps = 11/169 (6%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE----AGGITQHIGAYNVVTNHGSITFLDTPGHE 127
+ ++G GK+SL+ R + + + T+ I
Sbjct: 8 LGVLGDARSGKSSLI--HRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 65
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
F+ V + + ++ G+ L + + + R
Sbjct: 66 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA-SSPR 124
Query: 188 IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELK 236
+ D + + + + A G+ ++++ + ++ +++ L+
Sbjct: 125 VVGDARARALCADMKR--CSYYETCATYGLNVDRVFQEVA--QKVVTLR 169
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 32.7 bits (73), Expect = 0.19
Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 11/161 (6%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
+ ++G GK++L +++ V + + V + LDT G E FT
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65
Query: 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAI-----AHAKISGVPLIVAINKIDKLDINL 185
AMR K LV + + + VP+I+ NK D
Sbjct: 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD----LE 121
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
D Q + ++ F+ SAK+ + +N++ ++
Sbjct: 122 DERVVGKEQGQNLARQWCNC-AFLESSAKSKINVNEIFYDL 161
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 32.8 bits (73), Expect = 0.19
Identities = 22/164 (13%), Positives = 43/164 (26%), Gaps = 15/164 (9%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
V ++G GK++L + + + + G +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 65
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQTR---------EAIAHAKISGVPLIVAINKIDKLD 182
V + + + + +P+I+ NK D
Sbjct: 66 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL-- 123
Query: 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
R ++ +SE FI SA + +L E I
Sbjct: 124 ---VRCREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGI 163
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 32.7 bits (73), Expect = 0.19
Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 20/174 (11%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE----AGGITQHIGAYNVVTNHGSITFLDTPGHE 127
+ ++G GKT+ + R F + G+ H ++ DT G E
Sbjct: 6 LVLVGDGGTGKTTFV--KRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS---GVPLIVAINKIDKLDIN 184
F +R +++ V + + +P+++ NK+D D
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123
Query: 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS---LQAEILEL 235
+ ++ + + ISAK+ K ++ + LE
Sbjct: 124 VKAKSIVFHRKKNLQ--------YYDISAKSNYNFEKPFLWLARKLIGDPNLEF 169
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 32.6 bits (73), Expect = 0.22
Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIG----AYNVVTNHGSITFLDTPGHE 127
V ++G GK+SL+ R F T + V + ++ DT G E
Sbjct: 9 VILLGDGGVGKSSLM--NRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
F ++R + +D +L V + + + +
Sbjct: 67 RFRSLRTPFYRGSDCCLLTF----SVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122
Query: 188 IKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLLENI 226
K D+ QV EE G P+ SAK + E
Sbjct: 123 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 167
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 32.2 bits (72), Expect = 0.23
Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 8/159 (5%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSIT----FLDTPGHE 127
+ +G GKTSL+ R F T I + T DT G E
Sbjct: 3 LVFLGEQSVGKTSLI--TRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
F ++ + + V+V + Q + V I + D+
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120
Query: 188 IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + + +E FI SAK G + +L +
Sbjct: 121 RQVSIEEGERKAKELN--VMFIETSAKAGYNVKQLFRRV 157
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor
ERF2, post-G domain {Fission yeast (Schizosaccharomyces
pombe) [TaxId: 4896]}
Length = 95
Score = 30.9 bits (70), Expect = 0.24
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 1136 GKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--L 1193
G I G+I +G IK +V++M ++ I + + ++ GD V
Sbjct: 22 GTILEGKIEAGSIKKNSNVLVMPINQ----TLEVTAIYDEADEEI---SSSICGDQVRLR 74
Query: 1194 ITGIEE-ICIGSTICDPSKP 1212
+ G + + G + P
Sbjct: 75 VRGDDSDVQTGYVLTSTKNP 94
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 32.0 bits (71), Expect = 0.28
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 13/168 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEA----GGITQHIGAYNVVTNHGSITFLDTPGHE 127
+ ++G+ GK+S++ R +F++ G+ V + DT G E
Sbjct: 5 MVVVGNGAVGKSSMI--QRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
F A+ + VLV + D + + ++ V I + +D
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDI----PTALVQNKIDL 118
Query: 188 IKQDLISEQVIPEEYGGAS-PFISISAKTGVGINKLLENISLQAEILE 234
+ I + F S K + ++++ + ++ + L+
Sbjct: 119 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA--EKHLQ 164
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 31.9 bits (71), Expect = 0.32
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 6/158 (3%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
+ ++G GK++L +I+ V + + +V + LDT G E F
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 68
Query: 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAH--AKISGVPLIVAINKIDKLDINLDRI 188
AMR + + +LV A +D + ++ + +K D+ R
Sbjct: 69 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ 128
Query: 189 KQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + SAK + +++ E +
Sbjct: 129 VPRSEASAFGASH---HVAYFEASAKLRLNVDEAFEQL 163
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.5 bits (70), Expect = 0.50
Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 17/164 (10%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
V + G GK+SL+ +R F E+ T V++ SI L
Sbjct: 5 VAVFGAGGVGKSSLV--LRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62
Query: 132 MR---------ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD 182
+ + + ++ + + +P+++ NK D+
Sbjct: 63 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122
Query: 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + + + + F+ SAK + +L + +
Sbjct: 123 SREVQSSEA----EALARTWK--CAFMETSAKLNHNVKELFQEL 160
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 31.7 bits (71), Expect = 0.56
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARPEWVVD 1059
EV L ++D V L+DA + + L KP I+++NK D++ V
Sbjct: 8 EVTEKLKLIDIVYELVDARIPMSSRNPMIED---ILKNKPRIMLLNKADKA---DAAVTQ 61
Query: 1060 ATFDLFDKL 1068
+ F+
Sbjct: 62 QWKEHFENQ 70
Score = 30.2 bits (67), Expect = 1.8
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQ 196
K+ DIV +V A + + K P I+ +NK DK D + + ++ Q
Sbjct: 14 KLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADAAVTQQWKEHFENQ 70
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 30.9 bits (69), Expect = 0.89
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 1009 VDNVLLLIDAVEGPMPQTRFVTR---KALKLGFKPIVVVNKID 1048
VD +L+ AV+ P T + R +PI+ + K+D
Sbjct: 11 VDQAVLVFSAVQ-PSFSTALLDRFLVLVEANDIQPIICITKMD 52
Score = 28.9 bits (64), Expect = 4.0
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 12/98 (12%)
Query: 141 DIVVLVVAADDGVMPQTREA-----IAHAKISGVPLIVAINKIDKLDINLDRIKQDLISE 195
D VLV +A P A + + + + I+ I K+D ++ +E
Sbjct: 12 DQAVLVFSAVQ---PSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAE 68
Query: 196 QVIPEEYGGASPFISISAKTGVGINKLLENISLQAEIL 233
Y S+K + ++ + + +
Sbjct: 69 DYRNIGY----DVYLTSSKDQDSLADIIPHFQDKTTVF 102
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 75
Score = 28.6 bits (64), Expect = 0.97
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 1277 VSGRGELHLTILIENMRRE 1295
+SG GEL L I+++ ++RE
Sbjct: 48 ISGMGELSLEIIVDRLKRE 66
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
{Escherichia coli [TaxId: 562]}
Length = 144
Score = 29.8 bits (67), Expect = 1.2
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 94 VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD-DG 152
+ + G I A N N P A + +G DI V+A D
Sbjct: 64 ALECKDGRIFSGSYAENAAFNPTL-----PPLQGALILLNLKGYDYPDIQRAVLAEKADA 118
Query: 153 VMPQ---TREAIAHAKISGVPLIV 173
+ Q T + + ++
Sbjct: 119 PLIQWDATSATLKALGCHSIDRVL 142
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 29.6 bits (65), Expect = 2.0
Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 8/160 (5%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE----AGGITQHIGAYNVVTNHGSITFLDTPGHE 127
V ++G GK+S++ R F G + DT G E
Sbjct: 7 VCLLGDTGVGKSSIM--WRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
F A+ + + ++V T + P + + D
Sbjct: 65 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124
Query: 188 IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
+ + + + F+ SAK + IN+L IS
Sbjct: 125 REVMERDAKDYADSIH--AIFVETSAKNAININELFIEIS 162
>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein PSF2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 26.5 bits (59), Expect = 3.6
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 1491 IEFINDDELVEITPKNIRLRKRFL 1514
+EF+ + ELV I P N L K +L
Sbjct: 6 VEFLAEKELVTIIP-NFSLDKIYL 28
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 28.1 bits (61), Expect = 6.4
Identities = 24/172 (13%), Positives = 42/172 (24%), Gaps = 22/172 (12%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIG-------------AYNVVTNHGSI 118
V I+G GKTSL+ + N FS T + G
Sbjct: 5 VIILGDSGVGKTSLM--NQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 119 TFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKI 178
F A D +A + +++
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 179 DKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230
+ + Q + P+ SAK + + + + I+ A
Sbjct: 123 LENRQVATKRAQAWCYSK-------NNIPYFETSAKEAINVEQAFQTIARNA 167
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 27.7 bits (60), Expect = 7.5
Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 28/177 (15%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
+ K +I + GKT L +G F + E G+ + I+
Sbjct: 2 IFKIIVIGDSNVGKTCLTYRFC--AGRF------------PDRTEATIGVDFRERAVDID 47
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLI------DAVEGPMPQTRFVTRKALK 1035
+I + DT G F + + + ++ + + + L
Sbjct: 48 GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA 107
Query: 1036 LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANEN 1092
I+V NK D +A A K + P+ TSA + N++
Sbjct: 108 NDIPRILVGNKCDLRSAIQVPTDLA-----QKFA---DTHSMPLFETSAKNPNDNDH 156
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.389
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,713,494
Number of extensions: 294528
Number of successful extensions: 1107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 170
Length of query: 1527
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1430
Effective length of database: 1,075,786
Effective search space: 1538373980
Effective search space used: 1538373980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)