BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17586
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HRF|A Chain A, Solution Structure Of Cu(i) P174l Hsco1
 pdb|2HRN|A Chain A, Solution Structure Of Cu(I) P174l-Hsco1
          Length = 173

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 3/47 (6%)

Query: 40  VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKKKS 86
           VDHTIIMYLI P+G F+DY+GQNK+  E++ SI  +M  Y   +KKS
Sbjct: 130 VDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY---RKKS 173


>pdb|2GQK|A Chain A, Solution Structure Of Human Ni(Ii)-Sco1
 pdb|2GQL|A Chain A, Solution Structure Of Human Ni(Ii)-Sco1
 pdb|2GQM|A Chain A, Solution Structure Of Human Cu(I)-Sco1
 pdb|2GT5|A Chain A, Solution Structure Of Apo Human Sco1
 pdb|2GT6|A Chain A, Solution Structure Of Human Cu(I) Sco1
 pdb|2GVP|A Chain A, Solution Structure Of Human Apo Sco1
          Length = 173

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 3/47 (6%)

Query: 40  VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKKKS 86
           VDHTIIMYLI P+G F+DY+GQNK+  E++ SI  +M  Y   +KKS
Sbjct: 130 VDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY---RKKS 173


>pdb|2GGT|A Chain A, Crystal Structure Of Human Sco1 Complexed With Nickel.
 pdb|2GGT|B Chain B, Crystal Structure Of Human Sco1 Complexed With Nickel
          Length = 164

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 40  VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80
           VDHTIIMYLI P+G F+DY+GQNK+  E++ SI  +M  Y 
Sbjct: 124 VDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYR 164


>pdb|1WP0|A Chain A, Human Sco1
 pdb|1WP0|B Chain B, Human Sco1
 pdb|1WP0|C Chain C, Human Sco1
          Length = 165

 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 3/47 (6%)

Query: 40  VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKKKS 86
           VDHTII YLI P+G F+DY+GQNK+  E++ SI  +   Y   +KKS
Sbjct: 122 VDHTIIXYLIGPDGEFLDYFGQNKRKGEIAASIATHXRPY---RKKS 165


>pdb|2RLI|A Chain A, Solution Structure Of Cu(i) Human Sco2
          Length = 171

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 34/43 (79%)

Query: 40  VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENL 82
           VDH+I +YL++P+GLF DYYG+++  E++S+S+  +M  + ++
Sbjct: 127 VDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFRSV 169


>pdb|2B7J|A Chain A, Crystal Structure Of Yeast Sco1 With Copper Bound
 pdb|2B7J|B Chain B, Crystal Structure Of Yeast Sco1 With Copper Bound
 pdb|2B7J|C Chain C, Crystal Structure Of Yeast Sco1 With Copper Bound
 pdb|2B7J|D Chain D, Crystal Structure Of Yeast Sco1 With Copper Bound
 pdb|2B7K|A Chain A, Crystal Structure Of Yeast Sco1
 pdb|2B7K|B Chain B, Crystal Structure Of Yeast Sco1
 pdb|2B7K|C Chain C, Crystal Structure Of Yeast Sco1
 pdb|2B7K|D Chain D, Crystal Structure Of Yeast Sco1
          Length = 200

 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 40  VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY-----ENLKKKSWF 88
           VDH+I  YL+DPEG FVD  G+N   +   + I+ ++  Y        +K++W+
Sbjct: 142 VDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVPAEQRAKQKEAWY 195


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,242,038
Number of Sequences: 62578
Number of extensions: 116401
Number of successful extensions: 274
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 8
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)