BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17586
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5SUC9|SCO1_MOUSE Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=2
SV=1
Length = 284
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKKK 85
VDHTIIMYLI P+G F+DY+GQNKK E++ SI +M + +KK+
Sbjct: 241 VDHTIIMYLIGPDGEFLDYFGQNKKKAEIAGSIAAHMRSH--MKKR 284
>sp|O75880|SCO1_HUMAN Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1
SV=1
Length = 301
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 3/47 (6%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKKKS 86
VDHTIIMYLI P+G F+DY+GQNK+ E++ SI +M Y +KKS
Sbjct: 258 VDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY---RKKS 301
>sp|A1A4J8|SCO1_BOVIN Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1
Length = 305
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 3/47 (6%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKKKS 86
VDHTIIMYLI P+G F+DY+GQNKK E++ SI +M + +KKS
Sbjct: 262 VDHTIIMYLIGPDGEFLDYFGQNKKNAEIAGSIAAHMRTH---RKKS 305
>sp|O43819|SCO2_HUMAN Protein SCO2 homolog, mitochondrial OS=Homo sapiens GN=SCO2 PE=1
SV=3
Length = 266
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 34/43 (79%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENL 82
VDH+I +YL++P+GLF DYYG+++ E++S+S+ +M + ++
Sbjct: 222 VDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFRSV 264
>sp|Q8VCL2|SCO2_MOUSE Protein SCO2 homolog, mitochondrial OS=Mus musculus GN=Sco2 PE=2
SV=1
Length = 255
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENL 82
VDH+I +YL++P+GLF DYYG+++ E++ SI ++ + ++
Sbjct: 211 VDHSIAIYLLNPDGLFTDYYGRSRSAEQIVESIRRHIAAFHSV 253
>sp|A6H784|SCO2_BOVIN Protein SCO2 homolog, mitochondrial OS=Bos taurus GN=SCO2 PE=2 SV=1
Length = 266
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 31/43 (72%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENL 82
VDH+I +YL+ P+GLF DYY + + E++++S+ +M + ++
Sbjct: 222 VDHSIAIYLLSPDGLFTDYYSRARSAEQITDSVRRHMAAFRSV 264
>sp|Q5RH02|SCO2_DANRE Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3
SV=1
Length = 279
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENL 82
VDH+I++YL++P+GLF+DYY + K +++ SI +M + L
Sbjct: 234 VDHSIVIYLVNPDGLFIDYYNRMKNDTQIAESIRNHMKTFVRL 276
>sp|Q8VYP0|SCO11_ARATH Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana
GN=HCC1 PE=2 SV=1
Length = 334
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 38 FQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY 79
+ VDH+I+MYL+ PE FV +YG+N + +++ ++ + +Y
Sbjct: 291 YLVDHSIVMYLMSPEMNFVKFYGKNHDVDSLTDGVVKEIRQY 332
>sp|O42899|SCO1_SCHPO Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sco1 PE=3 SV=1
Length = 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSI 72
VDH++ YL+DPEG F++ +G+N E+++ +I
Sbjct: 220 VDHSVFFYLMDPEGKFIEVFGRNSTSEDLARAI 252
>sp|P23833|SCO1_YEAST Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1
Length = 295
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY-----ENLKKKSWF 88
VDH+I YL+DPEG FVD G+N + + I+ ++ Y +K++W+
Sbjct: 237 VDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVPAEQRAKQKEAWY 290
>sp|P38072|SCO2_YEAST Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1
Length = 301
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKKP----EEVSNSIIVNMMKYENLKK-KSWF 88
VDH+I YLIDPEG F+D G+N E++ I + K E ++ K W+
Sbjct: 243 VDHSIFFYLIDPEGQFIDALGRNYDEQSGLEKIREQIQAYVPKEERERRSKKWY 296
>sp|Q52720|SENC_RHOCB Protein SenC OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC
16581 / SB1003) GN=senC PE=3 SV=2
Length = 221
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSI 72
VDH+ YL+DP+ F+D+Y ++ PE V++S+
Sbjct: 169 VDHSTQTYLMDPKLGFLDFYDRDATPEMVADSV 201
>sp|Q18GK0|GLYA_HALWD Serine hydroxymethyltransferase OS=Haloquadratum walsbyi (strain
DSM 16790) GN=glyA PE=3 SV=1
Length = 415
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 42 HTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVN 75
+T+ Y +DPE ++DY G K +E + IIV+
Sbjct: 138 YTVEQYEVDPETGYIDYEGLKTKADEFNPDIIVS 171
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,141,888
Number of Sequences: 539616
Number of extensions: 1446309
Number of successful extensions: 3954
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3939
Number of HSP's gapped (non-prelim): 23
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)