Query psy17586
Match_columns 106
No_of_seqs 103 out of 574
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 17:25:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2792|consensus 99.6 2.3E-16 4.9E-21 125.9 4.8 69 11-80 209-279 (280)
2 COG1999 Uncharacterized protei 99.2 3.8E-11 8.2E-16 91.4 5.5 71 7-78 134-206 (207)
3 PF02630 SCO1-SenC: SCO1/SenC; 98.6 2E-08 4.2E-13 74.0 1.0 52 10-61 120-173 (174)
4 TIGR02540 gpx7 putative glutat 97.3 0.00025 5.3E-09 50.2 2.9 40 37-76 107-153 (153)
5 cd02968 SCO SCO (an acronym fo 96.4 0.0049 1.1E-07 42.0 3.9 38 21-60 104-141 (142)
6 PLN02399 phospholipid hydroper 95.0 0.041 9E-07 43.1 4.5 38 40-77 198-235 (236)
7 PLN02412 probable glutathione 95.0 0.06 1.3E-06 39.1 5.0 34 45-78 133-166 (167)
8 PTZ00056 glutathione peroxidas 94.9 0.082 1.8E-06 39.7 5.6 39 41-79 143-181 (199)
9 PTZ00256 glutathione peroxidas 94.8 0.055 1.2E-06 39.7 4.5 39 39-77 144-182 (183)
10 COG0386 BtuE Glutathione perox 94.7 0.041 8.8E-07 41.7 3.7 32 46-77 130-161 (162)
11 PRK10606 btuE putative glutath 94.6 0.039 8.4E-07 41.5 3.3 31 46-76 149-181 (183)
12 cd00340 GSH_Peroxidase Glutath 93.2 0.12 2.6E-06 36.5 3.4 32 40-71 120-151 (152)
13 PRK15412 thiol:disulfide inter 92.8 0.29 6.3E-06 35.9 5.2 43 37-79 137-179 (185)
14 PRK03147 thiol-disulfide oxido 92.7 0.24 5.3E-06 34.7 4.5 38 37-74 133-170 (173)
15 TIGR00385 dsbE periplasmic pro 92.1 0.29 6.3E-06 35.4 4.3 41 37-77 132-172 (173)
16 cd03015 PRX_Typ2cys Peroxiredo 91.0 0.54 1.2E-05 33.8 4.8 32 44-75 121-156 (173)
17 KOG1651|consensus 89.8 0.32 7E-06 37.1 2.8 33 45-77 138-170 (171)
18 PRK09437 bcp thioredoxin-depen 89.1 0.84 1.8E-05 31.8 4.4 30 37-67 115-144 (154)
19 cd02969 PRX_like1 Peroxiredoxi 88.6 0.76 1.6E-05 32.7 4.0 42 37-78 104-154 (171)
20 cd02950 TxlA TRX-like protein 88.0 1.3 2.8E-05 31.4 4.8 42 36-77 70-111 (142)
21 cd02958 UAS UAS family; UAS is 88.0 1.2 2.5E-05 29.9 4.4 42 37-78 71-113 (114)
22 cd03017 PRX_BCP Peroxiredoxin 87.5 0.68 1.5E-05 31.2 3.0 29 44-72 111-139 (140)
23 cd03016 PRX_1cys Peroxiredoxin 87.4 0.94 2E-05 33.8 4.0 30 45-74 119-152 (203)
24 TIGR03137 AhpC peroxiredoxin. 87.2 0.77 1.7E-05 33.8 3.3 37 42-78 118-154 (187)
25 cd03011 TlpA_like_ScsD_MtbDsbE 86.6 1 2.2E-05 29.8 3.4 34 37-71 88-121 (123)
26 PF02824 TGS: TGS domain; Int 85.5 1.8 3.8E-05 26.8 3.9 31 45-78 2-32 (60)
27 cd02966 TlpA_like_family TlpA- 85.0 0.88 1.9E-05 28.3 2.4 25 36-60 91-115 (116)
28 TIGR01626 ytfJ_HI0045 conserve 85.0 2.2 4.9E-05 32.3 5.0 40 37-77 140-180 (184)
29 PTZ00253 tryparedoxin peroxida 84.6 1.4 3.1E-05 32.6 3.7 37 44-80 128-164 (199)
30 PRK13599 putative peroxiredoxi 84.3 1.5 3.2E-05 33.5 3.7 32 43-74 119-154 (215)
31 PRK13190 putative peroxiredoxi 84.2 2.9 6.3E-05 31.3 5.2 34 43-76 117-154 (202)
32 PF13098 Thioredoxin_2: Thiore 84.0 1.5 3.2E-05 28.6 3.2 36 37-72 77-112 (112)
33 PRK13189 peroxiredoxin; Provis 83.4 1.7 3.7E-05 33.2 3.8 31 44-74 127-161 (222)
34 PRK10382 alkyl hydroperoxide r 81.2 1.8 4E-05 32.4 3.2 29 44-72 120-152 (187)
35 PRK15000 peroxidase; Provision 80.2 2.3 5E-05 31.9 3.4 32 43-74 125-160 (200)
36 cd02951 SoxW SoxW family; SoxW 80.0 5.3 0.00012 26.8 4.9 41 37-77 79-120 (125)
37 PF05176 ATP-synt_10: ATP10 pr 79.5 3.7 7.9E-05 32.5 4.5 31 40-70 214-244 (252)
38 COG1225 Bcp Peroxiredoxin [Pos 78.0 3.4 7.3E-05 30.9 3.7 26 40-66 117-142 (157)
39 TIGR02738 TrbB type-F conjugat 77.5 4 8.7E-05 29.7 3.9 37 39-75 115-152 (153)
40 PRK13728 conjugal transfer pro 77.0 6.1 0.00013 30.0 4.9 38 41-78 135-173 (181)
41 COG0450 AhpC Peroxiredoxin [Po 75.1 4.5 9.7E-05 31.4 3.7 46 44-89 125-176 (194)
42 PRK13191 putative peroxiredoxi 74.9 3.9 8.5E-05 31.1 3.4 31 44-74 125-159 (215)
43 cd03012 TlpA_like_DipZ_like Tl 74.5 2.9 6.2E-05 28.2 2.3 24 37-60 100-123 (126)
44 PTZ00137 2-Cys peroxiredoxin; 74.2 4.2 9.2E-05 32.4 3.5 31 43-73 188-222 (261)
45 PLN02919 haloacid dehalogenase 73.4 6.1 0.00013 36.9 4.8 46 37-82 497-542 (1057)
46 TIGR02739 TraF type-F conjugat 71.5 7.2 0.00016 31.1 4.2 43 37-79 208-251 (256)
47 cd03010 TlpA_like_DsbE TlpA-li 68.4 5.8 0.00013 26.4 2.7 31 37-67 95-125 (127)
48 PRK00522 tpx lipid hydroperoxi 68.2 11 0.00025 27.0 4.4 16 45-60 133-148 (167)
49 cd03018 PRX_AhpE_like Peroxire 68.0 5.1 0.00011 27.3 2.4 21 43-63 114-134 (149)
50 PRK14552 C/D box methylation g 67.7 7.1 0.00015 33.2 3.7 38 38-75 3-40 (414)
51 PF13642 DUF4144: protein stru 65.7 17 0.00036 25.3 4.6 60 35-94 33-95 (101)
52 TIGR02661 MauD methylamine deh 65.0 14 0.0003 27.1 4.4 23 36-58 140-162 (189)
53 cd02971 PRX_family Peroxiredox 64.9 6.8 0.00015 26.2 2.5 22 43-64 110-131 (140)
54 KOG4107|consensus 64.1 23 0.00051 25.6 5.2 45 45-89 21-66 (125)
55 cd02967 mauD Methylamine utili 62.9 6.3 0.00014 25.5 2.0 21 37-57 90-110 (114)
56 PRK13703 conjugal pilus assemb 62.4 15 0.00033 29.2 4.4 43 37-79 201-244 (248)
57 cd08348 BphC2-C3-RGP6_C_like T 61.0 14 0.00031 24.3 3.5 27 44-70 103-129 (134)
58 PF03259 Robl_LC7: Roadblock/L 60.2 15 0.00033 22.9 3.4 39 43-81 15-54 (91)
59 PF08534 Redoxin: Redoxin; In 59.9 8.2 0.00018 26.3 2.2 23 42-64 114-136 (146)
60 PF10029 DUF2271: Predicted pe 59.0 19 0.00042 26.0 4.1 52 44-97 23-74 (139)
61 cd02953 DsbDgamma DsbD gamma f 57.6 12 0.00025 24.2 2.5 36 37-72 67-103 (104)
62 PF14639 YqgF: Holliday-juncti 56.7 28 0.0006 25.4 4.7 40 40-79 17-62 (150)
63 PF13778 DUF4174: Domain of un 56.0 24 0.00053 24.5 4.1 32 44-75 80-111 (118)
64 PF06491 Disulph_isomer: Disul 55.3 22 0.00048 26.3 3.9 36 43-79 96-135 (136)
65 PF11760 CbiG_N: Cobalamin syn 54.5 25 0.00054 23.8 3.8 35 43-77 38-74 (84)
66 PF12681 Glyoxalase_2: Glyoxal 53.4 14 0.00031 23.1 2.4 16 44-59 93-108 (108)
67 cd07266 HPCD_N_class_II N-term 52.6 15 0.00033 23.6 2.5 17 44-60 101-117 (121)
68 PRK11440 putative hydrolase; P 51.8 33 0.00071 24.9 4.4 47 42-88 7-53 (188)
69 cd04468 S1_eIF5A S1_eIF5A: Euk 51.1 29 0.00063 22.6 3.6 32 44-77 14-45 (69)
70 PF00578 AhpC-TSA: AhpC/TSA fa 51.1 13 0.00027 24.2 1.9 16 42-57 108-123 (124)
71 PRK14018 trifunctional thiored 50.7 33 0.00071 30.1 4.9 37 37-73 134-170 (521)
72 PRK09381 trxA thioredoxin; Pro 50.7 29 0.00062 22.4 3.6 39 37-76 70-108 (109)
73 PF02743 Cache_1: Cache domain 50.5 11 0.00025 23.4 1.6 23 37-59 47-69 (81)
74 PF01295 Adenylate_cycl: Adeny 50.5 36 0.00079 30.4 5.2 40 41-80 526-565 (604)
75 cd07253 Glo_EDI_BRP_like_2 Thi 50.0 19 0.00041 22.7 2.6 18 43-60 107-124 (125)
76 cd09013 BphC-JF8_N_like N-term 49.3 19 0.0004 23.4 2.6 20 41-60 98-117 (121)
77 cd07237 BphC1-RGP6_C_like C-te 48.8 17 0.00038 25.4 2.5 22 41-62 111-132 (154)
78 cd08344 MhqB_like_N N-terminal 47.1 27 0.00058 22.5 3.0 17 45-61 93-109 (112)
79 cd08362 BphC5-RrK37_N_like N-t 47.0 25 0.00055 22.4 2.9 18 44-61 100-117 (120)
80 TIGR02740 TraF-like TraF-like 47.0 35 0.00076 26.9 4.2 40 37-76 224-264 (271)
81 cd07252 BphC1-RGP6_N_like N-te 46.5 23 0.00051 23.1 2.7 18 44-61 100-117 (120)
82 TIGR01068 thioredoxin thioredo 46.3 40 0.00086 20.7 3.6 38 37-75 63-100 (101)
83 cd08351 ChaP_like ChaP, an enz 46.1 25 0.00055 23.0 2.8 19 44-62 104-122 (123)
84 PF09695 YtfJ_HI0045: Bacteria 46.0 48 0.001 25.1 4.6 32 41-72 123-154 (160)
85 PF13905 Thioredoxin_8: Thiore 45.6 11 0.00025 23.6 1.0 19 37-55 77-95 (95)
86 TIGR01126 pdi_dom protein disu 45.0 32 0.00069 21.3 3.0 37 37-74 64-100 (102)
87 cd07242 Glo_EDI_BRP_like_6 Thi 44.8 26 0.00056 22.7 2.7 19 42-60 109-127 (128)
88 cd01014 nicotinamidase_related 44.6 33 0.00071 24.2 3.4 42 46-87 2-43 (155)
89 cd07238 Glo_EDI_BRP_like_5 Thi 44.6 25 0.00054 22.3 2.6 17 44-60 94-110 (112)
90 cd07255 Glo_EDI_BRP_like_12 Th 44.1 25 0.00054 22.6 2.5 18 44-61 102-119 (125)
91 PF03396 Pox_RNA_pol_35: Poxvi 44.0 1.1E+02 0.0025 25.2 6.7 55 20-80 73-127 (292)
92 smart00497 IENR1 Intron encode 43.8 24 0.00051 20.2 2.2 34 44-77 2-35 (53)
93 cd09011 Glo_EDI_BRP_like_23 Th 42.4 29 0.00063 22.5 2.6 17 44-60 102-118 (120)
94 COG2443 Sss1 Preprotein transl 41.8 36 0.00077 22.2 2.9 27 65-91 4-34 (65)
95 cd08361 PpCmtC_N N-terminal do 41.8 30 0.00064 23.0 2.7 19 43-61 101-119 (124)
96 cd07254 Glo_EDI_BRP_like_20 Th 41.6 28 0.00061 22.4 2.5 18 43-60 99-116 (120)
97 cd07244 FosA FosA, a Fosfomyci 41.6 28 0.00061 22.7 2.5 18 43-60 92-109 (121)
98 cd03014 PRX_Atyp2cys Peroxired 41.3 27 0.00059 23.6 2.4 17 44-60 111-127 (143)
99 cd08357 Glo_EDI_BRP_like_18 Th 41.2 33 0.00072 21.9 2.8 17 43-59 107-123 (125)
100 cd08360 MhqB_like_C C-terminal 41.2 28 0.00062 23.3 2.5 19 44-62 103-121 (134)
101 TIGR00068 glyox_I lactoylgluta 40.7 37 0.00079 23.3 3.1 21 44-64 124-144 (150)
102 cd02961 PDI_a_family Protein D 40.6 26 0.00056 21.2 2.1 35 36-70 65-99 (101)
103 PF11141 DUF2914: Protein of u 40.5 67 0.0014 20.3 4.0 33 22-60 30-62 (66)
104 cd08350 BLMT_like BLMT, a bleo 40.3 32 0.0007 22.3 2.6 17 44-60 102-118 (120)
105 cd08364 FosX FosX, a fosfomyci 40.3 34 0.00074 23.0 2.8 19 43-61 104-122 (131)
106 PRK04101 fosfomycin resistance 40.2 33 0.00073 23.2 2.8 25 42-66 100-124 (139)
107 cd09012 Glo_EDI_BRP_like_24 Th 40.1 31 0.00067 22.5 2.5 15 45-59 108-122 (124)
108 cd03009 TryX_like_TryX_NRX Try 39.9 22 0.00047 23.8 1.8 22 37-58 94-115 (131)
109 cd07267 THT_Oxygenase_N N-term 39.9 32 0.00069 22.2 2.5 17 44-60 93-109 (113)
110 PRK11478 putative lyase; Provi 39.7 34 0.00073 22.2 2.6 18 43-60 111-128 (129)
111 cd07240 ED_TypeI_classII_N N-t 39.3 34 0.00073 21.5 2.5 17 44-60 97-113 (117)
112 cd02956 ybbN ybbN protein fami 39.1 54 0.0012 20.5 3.5 35 37-72 61-95 (96)
113 cd07247 SgaA_N_like N-terminal 38.1 36 0.00078 21.5 2.6 18 42-59 96-113 (114)
114 PF00571 CBS: CBS domain CBS d 36.7 46 0.00099 18.8 2.6 18 43-60 30-47 (57)
115 cd02949 TRX_NTR TRX domain, no 36.5 51 0.0011 21.0 3.1 35 37-72 62-96 (97)
116 PF02625 XdhC_CoxI: XdhC and C 36.3 84 0.0018 19.9 4.0 39 42-80 25-63 (71)
117 cd07257 THT_oxygenase_C The C- 36.3 39 0.00084 23.6 2.7 20 43-62 107-126 (153)
118 cd07265 2_3_CTD_N N-terminal d 36.3 39 0.00085 21.8 2.5 17 44-60 102-118 (122)
119 cd02964 TryX_like_family Trypa 36.0 28 0.0006 23.6 1.8 22 37-58 94-115 (132)
120 cd09014 BphC-JF8_C_like C-term 35.9 39 0.00085 24.0 2.7 21 41-61 107-127 (166)
121 cd07264 Glo_EDI_BRP_like_15 Th 35.5 45 0.00097 21.3 2.7 16 45-60 109-124 (125)
122 PF13728 TraF: F plasmid trans 35.1 53 0.0011 25.1 3.4 35 38-72 179-214 (215)
123 cd08352 Glo_EDI_BRP_like_1 Thi 34.9 42 0.00091 21.1 2.5 17 43-59 108-124 (125)
124 cd07245 Glo_EDI_BRP_like_9 Thi 34.9 37 0.0008 20.7 2.1 14 44-57 100-113 (114)
125 cd02963 TRX_DnaJ TRX domain, D 34.9 59 0.0013 21.5 3.3 37 37-74 74-110 (111)
126 PF08448 PAS_4: PAS fold; Int 34.6 43 0.00092 20.4 2.4 16 43-58 5-20 (110)
127 cd08345 Fosfomycin_RP Fosfomyc 34.3 45 0.00097 21.0 2.5 17 44-60 94-110 (113)
128 PF00085 Thioredoxin: Thioredo 34.3 71 0.0015 19.6 3.4 37 37-74 66-102 (103)
129 cd03008 TryX_like_RdCVF Trypar 34.1 80 0.0017 22.9 4.1 22 37-58 107-128 (146)
130 PF05228 CHASE4: CHASE4 domain 33.4 71 0.0015 21.9 3.6 37 44-80 51-92 (161)
131 cd02970 PRX_like2 Peroxiredoxi 33.4 42 0.00091 22.4 2.4 18 42-59 129-146 (149)
132 PF00857 Isochorismatase: Isoc 33.4 29 0.00063 24.2 1.6 46 44-89 1-46 (174)
133 cd08349 BLMA_like Bleomycin bi 33.3 44 0.00096 20.7 2.3 16 44-59 96-111 (112)
134 cd08363 FosB FosB, a fosfomyci 33.2 34 0.00073 23.0 1.9 21 43-63 97-117 (131)
135 cd07243 2_3_CTD_C C-terminal d 33.2 44 0.00096 23.0 2.5 17 44-60 108-124 (143)
136 cd07262 Glo_EDI_BRP_like_19 Th 32.9 49 0.0011 21.3 2.6 16 44-59 107-122 (123)
137 PRK10291 glyoxalase I; Provisi 32.6 42 0.0009 22.1 2.2 20 44-63 103-122 (129)
138 cd07261 Glo_EDI_BRP_like_11 Th 32.4 48 0.001 21.0 2.4 16 44-59 98-113 (114)
139 cd06587 Glo_EDI_BRP_like This 32.3 44 0.00094 19.8 2.1 16 42-57 96-111 (112)
140 KOG0180|consensus 32.1 56 0.0012 25.6 3.1 53 35-90 132-185 (204)
141 smart00594 UAS UAS domain. 31.4 75 0.0016 21.5 3.4 36 37-72 81-121 (122)
142 PF02563 Poly_export: Polysacc 31.3 45 0.00097 21.4 2.1 35 46-80 32-71 (82)
143 cd08354 Glo_EDI_BRP_like_13 Th 31.1 59 0.0013 20.6 2.7 19 42-60 103-121 (122)
144 PRK02134 hypothetical protein; 31.1 50 0.0011 25.9 2.8 39 47-85 75-119 (249)
145 cd08355 Glo_EDI_BRP_like_14 Th 31.0 57 0.0012 21.0 2.7 16 45-60 106-121 (122)
146 cd07235 MRD Mitomycin C resist 30.8 54 0.0012 21.0 2.5 16 44-59 106-121 (122)
147 PTZ00443 Thioredoxin domain-co 30.6 1.1E+02 0.0024 23.6 4.6 43 37-80 101-143 (224)
148 cd07233 Glyoxalase_I Glyoxalas 30.5 52 0.0011 20.8 2.4 17 42-58 104-120 (121)
149 cd07263 Glo_EDI_BRP_like_16 Th 30.4 59 0.0013 20.1 2.6 17 43-59 102-118 (119)
150 PRK09450 cyaA adenylate cyclas 30.3 1E+02 0.0022 28.8 4.9 38 41-78 750-787 (830)
151 KOG4614|consensus 29.9 1.1E+02 0.0025 25.0 4.6 29 42-70 247-275 (287)
152 KOG0852|consensus 29.7 81 0.0018 24.7 3.6 37 44-80 125-161 (196)
153 TIGR03645 glyox_marine lactoyl 29.6 59 0.0013 23.0 2.7 19 44-62 134-152 (162)
154 PF12791 RsgI_N: Anti-sigma fa 29.3 60 0.0013 19.3 2.3 19 45-63 7-25 (56)
155 cd07258 PpCmtC_C C-terminal do 29.2 67 0.0015 22.3 2.9 22 41-62 94-115 (141)
156 cd08343 ED_TypeI_classII_C C-t 28.9 72 0.0016 21.1 2.9 18 45-62 101-118 (131)
157 COG0346 GloA Lactoylglutathion 28.7 61 0.0013 19.7 2.4 15 45-59 123-137 (138)
158 TIGR01501 MthylAspMutase methy 28.5 58 0.0013 23.5 2.5 23 55-77 111-133 (134)
159 PF09142 TruB_C: tRNA Pseudour 28.3 48 0.001 20.4 1.8 19 42-60 25-43 (56)
160 cd07256 HPCD_C_class_II C-term 27.6 61 0.0013 22.8 2.5 18 44-61 106-123 (161)
161 PF10921 DUF2710: Protein of u 27.5 2.3E+02 0.005 20.1 6.8 46 35-80 43-93 (109)
162 cd07239 BphC5-RK37_C_like C-te 27.5 60 0.0013 22.5 2.4 17 45-61 101-117 (144)
163 PHA02533 17 large terminase pr 27.4 1.3E+02 0.0027 26.4 4.8 39 44-82 331-373 (534)
164 PRK06724 hypothetical protein; 27.2 65 0.0014 22.0 2.5 18 44-61 106-123 (128)
165 PF15384 DUF4610: Domain of un 27.2 1.3E+02 0.0027 23.7 4.3 65 39-104 84-150 (197)
166 TIGR01570 A_thal_3588 uncharac 27.2 40 0.00086 25.6 1.5 12 43-54 138-149 (161)
167 PF11065 DUF2866: Protein of u 27.1 76 0.0016 20.8 2.6 28 49-76 27-55 (65)
168 PF04759 DUF617: Protein of un 26.8 40 0.00087 25.7 1.5 13 43-55 143-155 (166)
169 TIGR01352 tonB_Cterm TonB fami 26.7 1.1E+02 0.0023 18.2 3.2 37 43-79 12-49 (74)
170 cd08359 Glo_EDI_BRP_like_22 Th 26.6 74 0.0016 20.2 2.6 17 43-59 102-118 (119)
171 cd04604 CBS_pair_KpsF_GutQ_ass 26.6 76 0.0016 19.6 2.6 19 43-61 25-43 (114)
172 PF02772 S-AdoMet_synt_M: S-ad 26.6 38 0.00081 24.3 1.2 18 37-55 103-120 (120)
173 cd02991 UAS_ETEA UAS family, E 26.2 1.5E+02 0.0033 20.3 4.3 39 40-78 74-115 (116)
174 PRK10996 thioredoxin 2; Provis 26.2 1.2E+02 0.0026 21.1 3.8 38 37-75 101-138 (139)
175 COG4191 Signal transduction hi 26.1 65 0.0014 29.1 2.8 56 42-101 99-156 (603)
176 cd08346 PcpA_N_like N-terminal 25.8 75 0.0016 20.0 2.5 17 42-58 109-125 (126)
177 cd02955 SSP411 TRX domain, SSP 25.8 99 0.0022 21.6 3.3 20 40-59 78-97 (124)
178 cd07251 Glo_EDI_BRP_like_10 Th 25.7 76 0.0017 19.9 2.5 17 43-59 103-119 (121)
179 PF14326 DUF4384: Domain of un 25.6 79 0.0017 20.2 2.6 23 44-66 21-43 (83)
180 PF10084 DUF2322: Uncharacteri 25.5 1.4E+02 0.0031 21.0 3.9 27 40-66 11-37 (100)
181 PRK05788 cobalamin biosynthesi 25.0 1.4E+02 0.0031 24.2 4.5 35 44-78 79-115 (315)
182 cd04582 CBS_pair_ABC_OpuCA_ass 24.9 86 0.0019 19.2 2.6 18 43-60 24-41 (106)
183 PF14284 PcfJ: PcfJ-like prote 24.9 73 0.0016 23.4 2.5 66 8-80 95-162 (169)
184 cd07241 Glo_EDI_BRP_like_3 Thi 24.8 75 0.0016 20.0 2.3 13 46-58 112-124 (125)
185 PRK12359 flavodoxin FldB; Prov 24.6 1.9E+02 0.0041 21.5 4.7 44 35-80 121-165 (172)
186 smart00116 CBS Domain in cysta 24.4 65 0.0014 16.1 1.7 17 44-60 24-40 (49)
187 cd02947 TRX_family TRX family; 24.3 1.2E+02 0.0027 17.5 3.1 35 37-72 58-92 (93)
188 smart00732 YqgFc Likely ribonu 24.2 1.2E+02 0.0027 19.0 3.3 37 43-79 12-50 (99)
189 cd08353 Glo_EDI_BRP_like_7 Thi 24.0 85 0.0018 20.8 2.6 17 44-60 124-140 (142)
190 PF01863 DUF45: Protein of unk 23.8 1.7E+02 0.0037 21.1 4.3 27 49-75 7-33 (205)
191 cd08356 Glo_EDI_BRP_like_17 Th 23.7 84 0.0018 20.4 2.5 16 44-59 97-112 (113)
192 PF13426 PAS_9: PAS domain; PD 23.5 86 0.0019 18.7 2.3 14 45-58 3-16 (104)
193 PF06057 VirJ: Bacterial virul 23.5 76 0.0017 24.5 2.5 26 57-82 39-64 (192)
194 TIGR03211 catechol_2_3 catecho 23.4 77 0.0017 24.3 2.5 18 42-59 246-263 (303)
195 PF01939 DUF91: Protein of unk 23.3 2.4E+02 0.0052 22.3 5.3 39 45-83 139-178 (228)
196 PF07293 DUF1450: Protein of u 23.2 1.2E+02 0.0025 20.2 3.0 23 52-78 52-74 (78)
197 PF06018 CodY: CodY GAF-like d 22.7 1.4E+02 0.0029 22.8 3.7 20 44-63 36-55 (177)
198 PRK06777 4-aminobutyrate amino 22.6 1.7E+02 0.0037 24.1 4.5 42 38-79 24-72 (421)
199 COG2088 SpoVG Uncharacterized 22.6 1.4E+02 0.0031 20.8 3.5 33 51-84 53-85 (95)
200 PRK13669 hypothetical protein; 22.3 1.3E+02 0.0028 20.2 3.1 23 52-78 52-74 (78)
201 TIGR02295 HpaD 3,4-dihydroxyph 21.9 87 0.0019 23.7 2.6 20 42-61 237-256 (294)
202 PF00480 ROK: ROK family; Int 21.8 1.9E+02 0.0042 20.1 4.2 39 43-81 8-48 (179)
203 PRK07482 hypothetical protein; 21.7 1.9E+02 0.0041 24.3 4.7 41 38-78 34-81 (461)
204 cd07246 Glo_EDI_BRP_like_8 Thi 21.7 1.1E+02 0.0024 19.2 2.7 18 43-60 104-121 (122)
205 PRK12381 bifunctional succinyl 21.7 1.8E+02 0.0039 23.6 4.5 41 38-78 23-70 (406)
206 PF12401 DUF3662: Protein of u 21.6 37 0.0008 23.7 0.4 28 52-79 13-40 (116)
207 PRK06058 4-aminobutyrate amino 21.3 2.1E+02 0.0046 23.7 4.9 41 38-78 40-87 (443)
208 PF01472 PUA: PUA domain; Int 21.3 1.5E+02 0.0033 18.5 3.2 26 45-70 36-61 (74)
209 PRK07483 hypothetical protein; 21.2 2.3E+02 0.005 23.7 5.1 41 38-78 14-61 (443)
210 PF00932 LTD: Lamin Tail Domai 21.0 82 0.0018 20.8 2.0 21 43-63 93-113 (116)
211 PLN02300 lactoylglutathione ly 20.9 86 0.0019 24.2 2.4 23 44-66 131-153 (286)
212 PF00903 Glyoxalase: Glyoxalas 20.6 90 0.0019 19.4 2.1 17 42-58 112-128 (128)
213 PRK06173 adenosylmethionine--8 20.3 2.1E+02 0.0047 23.8 4.7 41 38-78 28-75 (429)
214 PF14269 Arylsulfotran_2: Aryl 20.2 1.2E+02 0.0026 24.3 3.1 28 35-62 154-184 (299)
215 PRK02261 methylaspartate mutas 20.2 1E+02 0.0022 21.9 2.4 23 55-77 113-135 (137)
216 cd01015 CSHase N-carbamoylsarc 20.1 2E+02 0.0043 20.6 4.0 42 46-87 2-44 (179)
217 TIGR03027 pepcterm_export puta 20.1 2E+02 0.0044 20.6 4.1 35 47-81 23-62 (165)
218 cd01668 TGS_RelA_SpoT TGS_RelA 20.1 1.9E+02 0.004 16.4 3.5 27 46-73 1-27 (60)
219 cd02998 PDI_a_ERp38 PDIa famil 20.0 1E+02 0.0022 19.0 2.2 34 37-70 70-103 (105)
220 PRK09792 4-aminobutyrate trans 20.0 2.3E+02 0.005 23.3 4.8 41 38-78 24-71 (421)
No 1
>KOG2792|consensus
Probab=99.63 E-value=2.3e-16 Score=125.87 Aligned_cols=69 Identities=38% Similarity=0.599 Sum_probs=61.6
Q ss_pred cCCccccce--eeEEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 11 GGTLPLCRP--LMYSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 11 ~g~~~~~~~--~~y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
-||.+.+++ +.||||+++++.+. ++||+||||+++|||||+|+|+.+|+.+.+++++++.|+..|+.|+
T Consensus 209 TGT~eqvk~vak~yRVYfs~gp~d~-~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~y~ 279 (280)
T KOG2792|consen 209 TGTTEQVKQVAKKYRVYFSTGPKDE-DQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVASYR 279 (280)
T ss_pred cCCHHHHHHHHHHhEEeeccCCCCC-CCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHhcc
Confidence 488888887 34999999866444 7899999999999999999999999999999999999999998875
No 2
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.17 E-value=3.8e-11 Score=91.41 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=59.7
Q ss_pred eeeecCCccccce--eeEEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 7 LHFIGGTLPLCRP--LMYSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 7 ~~~~~g~~~~~~~--~~y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
.+++.|+.+.+.. +.|+|++++.+.+++ ++|+||||+.+||+||+|++...+....+|++|+++|+.++++
T Consensus 134 ~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~-~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 134 WIGLTGTPEQIEEVAKAYGVFYSKVPLDDS-QNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred eeeeeCCHHHHHHHHHHhcceeeecccCCC-CCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 4566777666666 459999876665543 6899999999999999999999999999999999999998854
No 3
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.55 E-value=2e-08 Score=74.00 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=40.0
Q ss_pred ecCCccccce--eeEEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeecC
Q psy17586 10 IGGTLPLCRP--LMYSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 10 ~~g~~~~~~~--~~y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~~ 61 (106)
.-|+.+.+++ ..|++++.+...+.++++|.|+||+.+||+||+||++..|..
T Consensus 120 ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 120 LTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp EEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred eEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 3455555555 238888887776666778999999999999999999999864
No 4
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.25 E-value=0.00025 Score=50.24 Aligned_cols=40 Identities=30% Similarity=0.535 Sum_probs=35.6
Q ss_pred ceeEeccee-------EEEEcCCCcEEEeecCCCCHHHHHHHHHHHH
Q psy17586 37 WFQVDHTII-------MYLIDPEGLFVDYYGQNKKPEEVSNSIIVNM 76 (106)
Q Consensus 37 dY~VDHSa~-------iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l 76 (106)
+|.++|+.. +||||++|+++..+....++++|.++|+.+|
T Consensus 107 ~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 107 RFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 588899765 9999999999999999999999999888764
No 5
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.42 E-value=0.0049 Score=42.00 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=29.7
Q ss_pred eEEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeec
Q psy17586 21 MYSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 21 ~y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~ 60 (106)
.|+++..+...+ ..+|.+.|+..+|||||+|+++..+.
T Consensus 104 ~~g~~~~~~~~~--~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 104 AFGVYYEKVPED--DGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HhcEEEEecCCC--CCceeEeccceEEEECCCCCEEEeec
Confidence 388877654322 24688999999999999999998875
No 6
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.01 E-value=0.041 Score=43.09 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=33.3
Q ss_pred EecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 40 VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
|-|--..||||++|+++..+....++++|.+.|+.+|+
T Consensus 198 i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 198 IKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 45556799999999999999999999999999998874
No 7
>PLN02412 probable glutathione peroxidase
Probab=94.98 E-value=0.06 Score=39.07 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=30.8
Q ss_pred eEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 45 IMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
..||+|++|+++..+....+++++.+.|+.+|.+
T Consensus 133 ~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 133 TKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred eeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999988753
No 8
>PTZ00056 glutathione peroxidase; Provisional
Probab=94.86 E-value=0.082 Score=39.73 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=32.9
Q ss_pred ecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHH
Q psy17586 41 DHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY 79 (106)
Q Consensus 41 DHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~ 79 (106)
.+....||+|++|+++..+....+++++.+.|..++++.
T Consensus 143 ~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 143 GWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred CCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 343359999999999999988889999999999999543
No 9
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.81 E-value=0.055 Score=39.72 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=33.3
Q ss_pred eEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 39 QVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 39 ~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
.+.++...||+|++|+++..+....+++++.+.|..+++
T Consensus 144 ~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 144 QIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred ccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 456666789999999999999888889999888888774
No 10
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.041 Score=41.66 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=29.7
Q ss_pred EEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 46 MYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 46 iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
=||+|++|+.+..|.+.+.|+++..+|+.+|.
T Consensus 130 KFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 130 KFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred EEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 59999999999999999999999999988874
No 11
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=94.60 E-value=0.039 Score=41.50 Aligned_cols=31 Identities=23% Similarity=0.553 Sum_probs=28.4
Q ss_pred EEEEcCCCcEEEeecCCCCHHH--HHHHHHHHH
Q psy17586 46 MYLIDPEGLFVDYYGQNKKPEE--VSNSIIVNM 76 (106)
Q Consensus 46 iYLmDPdGrfv~~f~~~~spee--iAe~Ir~~l 76 (106)
-||+|++|+.+..|.+...|++ |.+.|.++|
T Consensus 149 KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 149 KFLVGRDGQVIQRFSPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred EEEECCCCcEEEEECCCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987 888888776
No 12
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=93.18 E-value=0.12 Score=36.49 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=26.3
Q ss_pred EecceeEEEEcCCCcEEEeecCCCCHHHHHHH
Q psy17586 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNS 71 (106)
Q Consensus 40 VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~ 71 (106)
+-|...+||+|++|+++..+....+++++.+.
T Consensus 120 ~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 120 IKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred cccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 44555799999999999999988888877654
No 13
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=92.81 E-value=0.29 Score=35.87 Aligned_cols=43 Identities=21% Similarity=0.147 Sum_probs=37.5
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY 79 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~ 79 (106)
.|-|...-.+||+|++|+++....-..+.+++-+.|+.++++.
T Consensus 137 ~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 137 DLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred hcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 5778888899999999999999888888889888888888655
No 14
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=92.69 E-value=0.24 Score=34.72 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=31.5
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIV 74 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~ 74 (106)
.|-|.+...+||+|++|+.+..+....+++++.+.+..
T Consensus 133 ~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 133 AYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred HcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 47788899999999999999888888888877765543
No 15
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=92.08 E-value=0.29 Score=35.36 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=34.8
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
.|.|-....+|++|++|+.+..+.-..+.+++.+.|.++|.
T Consensus 132 ~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 132 DLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred hcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 46677778899999999999888777889999998888874
No 16
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=90.96 E-value=0.54 Score=33.77 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=23.7
Q ss_pred eeEEEEcCCCcEEEee----cCCCCHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYY----GQNKKPEEVSNSIIVN 75 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f----~~~~speeiAe~Ir~~ 75 (106)
..+||+||+|+++..+ +...+.+++.+.|+.+
T Consensus 121 p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 121 RGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred eEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 3689999999999999 4444566666666553
No 17
>KOG1651|consensus
Probab=89.81 E-value=0.32 Score=37.12 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=29.8
Q ss_pred eEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 45 IMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
.=||+||+|..+..|.+.++|.++..+|..+|.
T Consensus 138 ~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 138 TKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred EEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 359999999999999999999999999888874
No 18
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=89.09 E-value=0.84 Score=31.78 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=21.2
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEE 67 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~spee 67 (106)
.|...|. .+||+||+|+++..+.....++.
T Consensus 115 ~~~~~~~-~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 115 TYDGIHR-ISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred cccCcce-EEEEECCCCEEEEEEcCCCcchh
Confidence 3544565 46999999999999875444443
No 19
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=88.63 E-value=0.76 Score=32.72 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=30.1
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCC---------CCHHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQN---------KKPEEVSNSIIVNMMK 78 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~---------~speeiAe~Ir~~l~~ 78 (106)
.|-|.+...+||+||+|+++.....+ .+.+++.+.|+.++..
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 47788889999999999988664322 2346677777776643
No 20
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=88.04 E-value=1.3 Score=31.40 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=34.4
Q ss_pred CceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 36 FWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 36 ~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
..|-|..--.++++|++|+.+..+.-..+.+++.+.|+.++.
T Consensus 70 ~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 70 DRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred HHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 358899999999999999999888766777788777777664
No 21
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=87.99 E-value=1.2 Score=29.87 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=36.6
Q ss_pred ceeEecceeEEEEcC-CCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDP-EGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 37 dY~VDHSa~iYLmDP-dGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
.|.+.=.-.++++|| +|+.+..+.-..+++++...|+.++..
T Consensus 71 ~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 71 SYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred HhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 367777889999999 899999999999999999999887753
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=87.48 E-value=0.68 Score=31.23 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=22.4
Q ss_pred eeEEEEcCCCcEEEeecCCCCHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPEEVSNSI 72 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~speeiAe~I 72 (106)
..+||+|++|+++..+......+.+.+.+
T Consensus 111 p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 111 RSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred eeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 46899999999999997666556665543
No 23
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=87.42 E-value=0.94 Score=33.83 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=20.8
Q ss_pred eEEEEcCCCcEEEeecCCC----CHHHHHHHHHH
Q psy17586 45 IMYLIDPEGLFVDYYGQNK----KPEEVSNSIIV 74 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~----speeiAe~Ir~ 74 (106)
.+|||||+|+++..+.... +.+++...|..
T Consensus 119 ~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 119 AVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred EEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 5899999999998875543 34555554443
No 24
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=87.18 E-value=0.77 Score=33.81 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=24.6
Q ss_pred cceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 42 HTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
+...+||+|++|+++..+.....++.-++.|.+.|++
T Consensus 118 ~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 118 ADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred eeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 4567999999999999886544444344444444433
No 25
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=86.59 E-value=1 Score=29.78 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=28.9
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNS 71 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~ 71 (106)
.|.|.+...+||+|++| .+..+..-.+++++.++
T Consensus 88 ~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 88 RWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred hCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 58899999999999999 77777777788888765
No 26
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=85.54 E-value=1.8 Score=26.83 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=26.2
Q ss_pred eEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 45 IMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
.+|| |+|+.+. |+.+.++.++|..|..-+.+
T Consensus 2 ~v~l--pdG~~~~-~~~g~T~~d~A~~I~~~l~~ 32 (60)
T PF02824_consen 2 RVYL--PDGSIKE-LPEGSTVLDVAYSIHSSLAK 32 (60)
T ss_dssp EEEE--TTSCEEE-EETTBBHHHHHHHHSHHHHH
T ss_pred EEEC--CCCCeee-CCCCCCHHHHHHHHCHHHHh
Confidence 4566 9999888 79999999999999887754
No 27
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=85.04 E-value=0.88 Score=28.32 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.4
Q ss_pred CceeEecceeEEEEcCCCcEEEeec
Q psy17586 36 FWFQVDHTIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 36 ~dY~VDHSa~iYLmDPdGrfv~~f~ 60 (106)
..|-+.+...+||+||+|+++..+.
T Consensus 91 ~~~~~~~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 91 KAYGVRGLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred HhcCcCccceEEEECCCCcEEEEec
Confidence 4588889999999999999987653
No 28
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=85.00 E-value=2.2 Score=32.33 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=29.9
Q ss_pred ceeEecc-eeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 37 WFQVDHT-IIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 37 dY~VDHS-a~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
.|-|.-- ..+||+|++|+.+....-..+.+++.+ +..+|+
T Consensus 140 ~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~ 180 (184)
T TIGR01626 140 AWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVN 180 (184)
T ss_pred hcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHH
Confidence 4667665 445999999999999888888887755 555553
No 29
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=84.58 E-value=1.4 Score=32.62 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=23.6
Q ss_pred eeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
..+|||||+|+++..+....+...-++.+.+.|++.+
T Consensus 128 r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 128 RGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred EEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 5789999999999887554444433344444444443
No 30
>PRK13599 putative peroxiredoxin; Provisional
Probab=84.25 E-value=1.5 Score=33.55 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=22.6
Q ss_pred ceeEEEEcCCCcEEEeecCCC----CHHHHHHHHHH
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNK----KPEEVSNSIIV 74 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~----speeiAe~Ir~ 74 (106)
.-.+|||||+|+++..+-+.. +.+++...|..
T Consensus 119 ~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 119 VRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred eeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 478899999999998874333 35566655554
No 31
>PRK13190 putative peroxiredoxin; Provisional
Probab=84.21 E-value=2.9 Score=31.29 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=24.7
Q ss_pred ceeEEEEcCCCcEEEee----cCCCCHHHHHHHHHHHH
Q psy17586 43 TIIMYLIDPEGLFVDYY----GQNKKPEEVSNSIIVNM 76 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f----~~~~speeiAe~Ir~~l 76 (106)
--.+|||||+|+++... .-+.+.+++...|..+.
T Consensus 117 ~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 117 VRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred EeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 36789999999998766 44456677776666554
No 32
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=83.98 E-value=1.5 Score=28.59 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=26.5
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSI 72 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~I 72 (106)
.|-|.=+-.++++|++|+.+..+.--.+++++.+.|
T Consensus 77 ~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 77 RYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 366888899999999999998888777888887643
No 33
>PRK13189 peroxiredoxin; Provisional
Probab=83.42 E-value=1.7 Score=33.21 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=20.5
Q ss_pred eeEEEEcCCCcEEEeecCCC----CHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNK----KPEEVSNSIIV 74 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~----speeiAe~Ir~ 74 (106)
-.+|||||+|+++...-... +.+++...|..
T Consensus 127 r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 127 RAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred eEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 35899999999987765433 34555544443
No 34
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=81.21 E-value=1.8 Score=32.40 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=20.6
Q ss_pred eeEEEEcCCCcEEEeecCCC----CHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNK----KPEEVSNSI 72 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~----speeiAe~I 72 (106)
-.+|||||+|+.+..+-... +.+++.+.|
T Consensus 120 r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l 152 (187)
T PRK10382 120 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI 152 (187)
T ss_pred eEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 77899999999988875443 445555444
No 35
>PRK15000 peroxidase; Provisional
Probab=80.19 E-value=2.3 Score=31.95 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=22.1
Q ss_pred ceeEEEEcCCCcEEEeecCCC----CHHHHHHHHHH
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNK----KPEEVSNSIIV 74 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~----speeiAe~Ir~ 74 (106)
--.+|||||+|+++..+.... +.+++...|+.
T Consensus 125 ~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 125 LRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred EeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 578899999999988765544 44555544443
No 36
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=80.00 E-value=5.3 Score=26.78 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=33.5
Q ss_pred ceeEecceeEEEEcCC-CcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPE-GLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 37 dY~VDHSa~iYLmDPd-Grfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
.|-|.-.-.++++|++ |+.+..+.-..+.+++.+.|..++.
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred HcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 4778888999999999 8998887766778888877777663
No 37
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=79.54 E-value=3.7 Score=32.54 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=22.4
Q ss_pred EecceeEEEEcCCCcEEEeecCCCCHHHHHH
Q psy17586 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSN 70 (106)
Q Consensus 40 VDHSa~iYLmDPdGrfv~~f~~~~speeiAe 70 (106)
=..+..+||+|++||++=.=.-..+++|+..
T Consensus 214 N~~~GYvyLVD~~grIRWagsG~At~~E~~~ 244 (252)
T PF05176_consen 214 NSYVGYVYLVDPNGRIRWAGSGPATPEELES 244 (252)
T ss_pred CCCcCeEEEECCCCeEEeCccCCCCHHHHHH
Confidence 3468899999999997766444446776544
No 38
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=77.99 E-value=3.4 Score=30.89 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=19.3
Q ss_pred EecceeEEEEcCCCcEEEeecCCCCHH
Q psy17586 40 VDHTIIMYLIDPEGLFVDYYGQNKKPE 66 (106)
Q Consensus 40 VDHSa~iYLmDPdGrfv~~f~~~~spe 66 (106)
+-.--.+||||++|+++..+ ....++
T Consensus 117 ~~~~R~TfvId~dG~I~~~~-~~v~~~ 142 (157)
T COG1225 117 MGIERSTFVIDPDGKIRYVW-RKVKVK 142 (157)
T ss_pred ccccceEEEECCCCeEEEEe-cCCCCc
Confidence 34556789999999999999 444433
No 39
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=77.49 E-value=4 Score=29.72 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=26.7
Q ss_pred eEecceeEEEEcCCCcEEE-eecCCCCHHHHHHHHHHH
Q psy17586 39 QVDHTIIMYLIDPEGLFVD-YYGQNKKPEEVSNSIIVN 75 (106)
Q Consensus 39 ~VDHSa~iYLmDPdGrfv~-~f~~~~speeiAe~Ir~~ 75 (106)
.|...-.+||+|++|+.+. ...-..+.+++.+.|..+
T Consensus 115 ~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 115 RPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 5678889999999988544 444455677777776654
No 40
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=77.04 E-value=6.1 Score=30.01 Aligned_cols=38 Identities=8% Similarity=0.001 Sum_probs=30.2
Q ss_pred ecceeEEEEcCCCcEE-EeecCCCCHHHHHHHHHHHHHH
Q psy17586 41 DHTIIMYLIDPEGLFV-DYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 41 DHSa~iYLmDPdGrfv-~~f~~~~speeiAe~Ir~~l~~ 78 (106)
.+.-.+||+|++|+.+ ..+.-..+.+++.+.|..++..
T Consensus 135 ~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 135 VATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred CCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 5778899999999986 3455566788888888888865
No 41
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=75.14 E-value=4.5 Score=31.44 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=28.9
Q ss_pred eeEEEEcCCCcEEEeecCCCC----HHHHHHHHHHHH--HHHHhhhcCCcch
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKK----PEEVSNSIIVNM--MKYENLKKKSWFE 89 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~s----peeiAe~Ir~~l--~~~~~~~~~~~~~ 89 (106)
-.+|||||+|..+....+..+ .+++...|..+- +++.+.---.|-.
T Consensus 125 R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq~~~~hg~vcPanW~~ 176 (194)
T COG0450 125 RGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQFVAKHGEVCPANWKP 176 (194)
T ss_pred eEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHHHHHHhCCCccCCCCC
Confidence 368999999998888866654 566665555432 3334444445543
No 42
>PRK13191 putative peroxiredoxin; Provisional
Probab=74.92 E-value=3.9 Score=31.15 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=21.7
Q ss_pred eeEEEEcCCCcEEEeecCC----CCHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQN----KKPEEVSNSIIV 74 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~----~speeiAe~Ir~ 74 (106)
-.+|||||+|+++..+-++ .+.+++...|..
T Consensus 125 r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 125 RAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred EEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 5789999999999876333 345666655554
No 43
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=74.54 E-value=2.9 Score=28.24 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.0
Q ss_pred ceeEecceeEEEEcCCCcEEEeec
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~ 60 (106)
.|.+.|...+||+|++|+++..+.
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEEEe
Confidence 488999999999999999987653
No 44
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=74.19 E-value=4.2 Score=32.39 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCcEEEeecCCC----CHHHHHHHHH
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNK----KPEEVSNSII 73 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~----speeiAe~Ir 73 (106)
--.+|||||+|+++..+-.+. +.+++...|.
T Consensus 188 ~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 188 HRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred ecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 357899999999998874433 4455554443
No 45
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=73.36 E-value=6.1 Score=36.94 Aligned_cols=46 Identities=9% Similarity=0.187 Sum_probs=39.2
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENL 82 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~~~ 82 (106)
.|-|..--.+||+|++|+.+..+.-....+++.+.|..++.-|++.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~~~~ 542 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYYGEK 542 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhhccc
Confidence 4778888899999999999998877778889999999998877643
No 46
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=71.48 E-value=7.2 Score=31.11 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=33.4
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCC-CHHHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNK-KPEEVSNSIIVNMMKY 79 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~-speeiAe~Ir~~l~~~ 79 (106)
..-|.++-.+||++|+.+-..-+.++. +.++|.++|-..+..+
T Consensus 208 ~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 208 HLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred hcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 355789999999999955444455555 7899999999888776
No 47
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=68.39 E-value=5.8 Score=26.43 Aligned_cols=31 Identities=23% Similarity=0.125 Sum_probs=23.8
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEE 67 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~spee 67 (106)
.|-|-..-.+||+|++|+++..+.-..+.+.
T Consensus 95 ~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 95 DLGVYGVPETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred hcCCCCCCeEEEECCCceEEEEEeccCChHh
Confidence 4667777789999999999988766655543
No 48
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=68.17 E-value=11 Score=27.02 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=14.3
Q ss_pred eEEEEcCCCcEEEeec
Q psy17586 45 IMYLIDPEGLFVDYYG 60 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~ 60 (106)
.+||+|++|+++..+.
T Consensus 133 ~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 133 AVFVLDENNKVVYSEL 148 (167)
T ss_pred EEEEECCCCeEEEEEE
Confidence 7999999999998873
No 49
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=68.03 E-value=5.1 Score=27.26 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=17.3
Q ss_pred ceeEEEEcCCCcEEEeecCCC
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNK 63 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~ 63 (106)
+..+||+|++|+++..+....
T Consensus 114 ~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 114 ERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cceEEEECCCCEEEEEEecCC
Confidence 457899999999998886655
No 50
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=67.70 E-value=7.1 Score=33.17 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=34.3
Q ss_pred eeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVN 75 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~ 75 (106)
|+++|...+|++|.+|+.+.......+++++++.+..+
T Consensus 3 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 40 (414)
T PRK14552 3 YIAEHVIGAFAFDENGKLIDKIFNPEDIPKIVEELLNN 40 (414)
T ss_pred eeeeccceeeEEccCcchhhhhcCCCCHHHHHHHHHHH
Confidence 89999999999999999999888888898888877755
No 51
>PF13642 DUF4144: protein structure with unknown function; PDB: 2L6O_A.
Probab=65.73 E-value=17 Score=25.35 Aligned_cols=60 Identities=15% Similarity=-0.029 Sum_probs=30.8
Q ss_pred CCceeEecceeEEEEcC-CCcEEE--eecCCCCHHHHHHHHHHHHHHHHhhhcCCcchhhhhh
Q psy17586 35 IFWFQVDHTIIMYLIDP-EGLFVD--YYGQNKKPEEVSNSIIVNMMKYENLKKKSWFEDTIES 94 (106)
Q Consensus 35 ~~dY~VDHSa~iYLmDP-dGrfv~--~f~~~~speeiAe~Ir~~l~~~~~~~~~~~~~~~~~~ 94 (106)
.+||+||-....|.+.. .+.-.. .-....+.+++.+-||.+-.....-=..|...++++.
T Consensus 33 ~~D~LIDs~G~~y~l~~~~~~~~~l~~~~~~lsl~ev~~LIq~H~~~~g~cC~~Ki~f~si~q 95 (101)
T PF13642_consen 33 DDDRLIDSQGQSYQLKQSNSNKLSLQPSSQQLSLEEVTELIQAHAFSLGQCCIAKIQFNSIEQ 95 (101)
T ss_dssp TT--EEETT-EEEEE-T-----TSSEEEEEE--HHHHHHHHHHHHHHHT---SSSSS-SSHHH
T ss_pred CCCEEEeCCCCEEEeccccccchhcccCCCcccHHHHHHHHHHHHHhcCCeeeecccCCCHHH
Confidence 57899999999999987 332222 2244557788888777776554444445555555443
No 52
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=64.98 E-value=14 Score=27.14 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.6
Q ss_pred CceeEecceeEEEEcCCCcEEEe
Q psy17586 36 FWFQVDHTIIMYLIDPEGLFVDY 58 (106)
Q Consensus 36 ~dY~VDHSa~iYLmDPdGrfv~~ 58 (106)
..|-|......||+|++|+++..
T Consensus 140 ~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 140 MAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred HhccCCccceEEEECCCCeEEEc
Confidence 35888888889999999998875
No 53
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=64.88 E-value=6.8 Score=26.18 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=17.5
Q ss_pred ceeEEEEcCCCcEEEeecCCCC
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNKK 64 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~s 64 (106)
...+||||++|+++..+.....
T Consensus 110 ~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 110 ARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred eEEEEEECCCCcEEEEEecCCC
Confidence 3479999999999988765554
No 54
>KOG4107|consensus
Probab=64.09 E-value=23 Score=25.56 Aligned_cols=45 Identities=29% Similarity=0.479 Sum_probs=34.6
Q ss_pred eEEEEcCCCcEEEeecCCCCHHHHHHHHHHHH-HHHHhhhcCCcch
Q psy17586 45 IMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNM-MKYENLKKKSWFE 89 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l-~~~~~~~~~~~~~ 89 (106)
...|++.+|-+.++.+++.....+...|..-| .+++|.+-+-+-+
T Consensus 21 ~tlLln~EG~LLAYsGygdkdarvtaAiasniWAAyer~gn~af~e 66 (125)
T KOG4107|consen 21 GTLLLNKEGLLLAYSGYGDKDARVTAAIASNIWAAYERRGNQAFNE 66 (125)
T ss_pred ceEEEcCCCcEEEecccCcchhHHHHHHHHHHHHHHHHhccccccc
Confidence 35799999999999999999888877776655 7777666544433
No 55
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=62.89 E-value=6.3 Score=25.54 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=17.8
Q ss_pred ceeEecceeEEEEcCCCcEEE
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVD 57 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~ 57 (106)
.|.+.+.-.+||+|++|+++.
T Consensus 90 ~~~~~~~P~~~vid~~G~v~~ 110 (114)
T cd02967 90 AYQVSKLPYAVLLDEAGVIAA 110 (114)
T ss_pred hcCCCCcCeEEEECCCCeEEe
Confidence 577888899999999998764
No 56
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=62.38 E-value=15 Score=29.20 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=33.7
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCC-CHHHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNK-KPEEVSNSIIVNMMKY 79 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~-speeiAe~Ir~~l~~~ 79 (106)
...|.++-.+||+||+.+-..-+.++. +.+++.++|-.....+
T Consensus 201 ~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 201 RLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred hcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 467889999999999975555556655 8899999998877665
No 57
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=61.03 E-value=14 Score=24.34 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=20.1
Q ss_pred eeEEEEcCCCcEEEeecCCCCHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPEEVSN 70 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~speeiAe 70 (106)
-.+|+.||+|..+.++........+++
T Consensus 103 ~~~~~~DP~G~~ie~~~~~~~~~~~~~ 129 (134)
T cd08348 103 WSIYFRDPDGNRLELFVDTPWYVAQAA 129 (134)
T ss_pred eEEEEECCCCCEEEEEEcCCCChhhHH
Confidence 468999999999999966555444443
No 58
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=60.23 E-value=15 Score=22.93 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=26.4
Q ss_pred ceeEEEEcCCCcEEEe-ecCCCCHHHHHHHHHHHHHHHHh
Q psy17586 43 TIIMYLIDPEGLFVDY-YGQNKKPEEVSNSIIVNMMKYEN 81 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~-f~~~~speeiAe~Ir~~l~~~~~ 81 (106)
-....|+|.||..+.. ......++.+++....++...++
T Consensus 15 v~~~~l~~~dG~~i~~~~~~~~~~~~~aa~~a~~~~~~~~ 54 (91)
T PF03259_consen 15 VRGAVLVDKDGLVIASSGIDDDDAEKLAAMAASLLAAAEK 54 (91)
T ss_dssp EEEEEEEETTSEEEEETSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCEEEEecCCcccHHHHHHHHHHHHHHHHH
Confidence 3467899999999999 33333556677766666654443
No 59
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=59.94 E-value=8.2 Score=26.28 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.6
Q ss_pred cceeEEEEcCCCcEEEeecCCCC
Q psy17586 42 HTIIMYLIDPEGLFVDYYGQNKK 64 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~~~~s 64 (106)
..-.+||||++|+.+.......+
T Consensus 114 ~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 114 GIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp SSSEEEEEETTSBEEEEEESSBT
T ss_pred eecEEEEEECCCEEEEEEeCCCC
Confidence 78899999999999988766555
No 60
>PF10029 DUF2271: Predicted periplasmic protein (DUF2271); InterPro: IPR014469 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.97 E-value=19 Score=25.99 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=36.0
Q ss_pred eeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHHhhhcCCcchhhhhhhcc
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKKKSWFEDTIESLTS 97 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~~~~~~~~~~~~~~~~~~ 97 (106)
.+++|.|++|+++..+--.....+...+|+..-++. .+...-.-|++-.+|-
T Consensus 23 vAvWled~~g~~v~TL~v~~~~~kW~kdLr~Wwr~~--~~~~~~~vDgiTgAT~ 74 (139)
T PF10029_consen 23 VAVWLEDADGKYVKTLAVWGDKKKWLKDLRQWWRKS--GRSNKEPVDGITGATR 74 (139)
T ss_pred EEEEEECCCCCEEEEEEEEcCchHHHHHHHHHHHHh--cccccccccccccCCC
Confidence 689999999999988876666668888887775422 2334444566655553
No 61
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=57.55 E-value=12 Score=24.21 Aligned_cols=36 Identities=11% Similarity=-0.054 Sum_probs=30.0
Q ss_pred ceeEecceeEEEEcC-CCcEEEeecCCCCHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDP-EGLFVDYYGQNKKPEEVSNSI 72 (106)
Q Consensus 37 dY~VDHSa~iYLmDP-dGrfv~~f~~~~speeiAe~I 72 (106)
.|-|...-.++++++ +|+.+..+.-..+.+++.+.|
T Consensus 67 ~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 67 RFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred HcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 488899999999999 999888887777888777654
No 62
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=56.68 E-value=28 Score=25.43 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=25.7
Q ss_pred EecceeEEEEcCCCcEEEeecC--C----CCHHHHHHHHHHHHHHH
Q psy17586 40 VDHTIIMYLIDPEGLFVDYYGQ--N----KKPEEVSNSIIVNMMKY 79 (106)
Q Consensus 40 VDHSa~iYLmDPdGrfv~~f~~--~----~speeiAe~Ir~~l~~~ 79 (106)
-++.++..++|.+|+++.++.- . ...++-.+.|..+|.++
T Consensus 17 ~~~~~~~v~ld~~G~v~d~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 62 (150)
T PF14639_consen 17 GDDAVFCVVLDENGEVLDHLKLVYNERDRERKEEDMERLKKFIEKH 62 (150)
T ss_dssp TTS-EEEEEE-TTS-EEEEEEE-S-TT-SS-SHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCcEEEEEEEcCCccchHHHHHHHHHHHHHHHHc
Confidence 5678899999999999987543 1 12345567777888766
No 63
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=56.04 E-value=24 Score=24.47 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=27.6
Q ss_pred eeEEEEcCCCcEEEeecCCCCHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVN 75 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~ 75 (106)
-.++|++.||....-++...++++|-+.|-..
T Consensus 80 f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 80 FTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred eEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 46899999999999999999999998876543
No 64
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=55.28 E-value=22 Score=26.30 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=26.2
Q ss_pred ceeEEEEcCCCcEEEeecCC----CCHHHHHHHHHHHHHHH
Q psy17586 43 TIIMYLIDPEGLFVDYYGQN----KKPEEVSNSIIVNMMKY 79 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~----~speeiAe~Ir~~l~~~ 79 (106)
|-.+-|+ .||+++-+++.. .++++|++.|.....+|
T Consensus 96 SPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~af~~~ 135 (136)
T PF06491_consen 96 SPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQDAFDEY 135 (136)
T ss_dssp SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHHHHHHH
T ss_pred Cchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHHHHHhh
Confidence 4445555 899999999764 47899999999887664
No 65
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=54.53 E-value=25 Score=23.77 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=23.7
Q ss_pred ceeEEEEcCCCcEEEeecCCC-C-HHHHHHHHHHHHH
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNK-K-PEEVSNSIIVNMM 77 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~-s-peeiAe~Ir~~l~ 77 (106)
-..+.++|++|+|+--+-.+. . +.+++..|...|.
T Consensus 38 DPaVvvvde~g~~vIplL~GH~GGan~lA~~iA~~lg 74 (84)
T PF11760_consen 38 DPAVVVVDEDGRFVIPLLGGHRGGANELARQIAELLG 74 (84)
T ss_dssp --EEEEE-TT--EEEEEE-TTTT-HHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCEEEEeccCCcchHHHHHHHHHHHhC
Confidence 357899999999998876555 3 7899999988764
No 66
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=53.38 E-value=14 Score=23.06 Aligned_cols=16 Identities=31% Similarity=0.771 Sum_probs=11.8
Q ss_pred eeEEEEcCCCcEEEee
Q psy17586 44 IIMYLIDPEGLFVDYY 59 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f 59 (106)
-.+|+.||+|..+.++
T Consensus 93 ~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 93 RSFYFIDPDGNRIEFC 108 (108)
T ss_dssp EEEEEE-TTS-EEEEE
T ss_pred EEEEEECCCCCEEEeC
Confidence 6899999999988763
No 67
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=52.58 E-value=15 Score=23.65 Aligned_cols=17 Identities=24% Similarity=0.596 Sum_probs=14.7
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
..+|+.||+|..+.++.
T Consensus 101 ~~~~~~DPdG~~ve~~~ 117 (121)
T cd07266 101 RALRVEDPLGFPIEFYA 117 (121)
T ss_pred cEEEEECCCCCEEEEEe
Confidence 57899999999998873
No 68
>PRK11440 putative hydrolase; Provisional
Probab=51.78 E-value=33 Score=24.91 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=35.3
Q ss_pred cceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHHhhhcCCcc
Q psy17586 42 HTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKKKSWF 88 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~~~~~~~~~ 88 (106)
..+.+.++|-+..|+..-......+++.+.++++++.+++.+.+-.+
T Consensus 7 ~~~ALlvID~Qn~f~~~~~~~~~~~~~i~~i~~l~~~ar~~g~pVi~ 53 (188)
T PRK11440 7 KTTALVVIDLQEGILPFAGGPHTADEVVARAARLAAKFRASGSPVVL 53 (188)
T ss_pred CCEEEEEEecccccccCCCCcchHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 35788899999988753222334678999999999999988887543
No 69
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=51.12 E-value=29 Score=22.65 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=25.2
Q ss_pred eeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
.++-||+.+|..+.=++ .+..++.+.|+....
T Consensus 14 GflsLm~e~G~~k~Dlk--lP~~elg~~I~~~f~ 45 (69)
T cd04468 14 GFLSLMDDDGETREDLK--LPEGELGKEIREKFD 45 (69)
T ss_pred CeEEEEcCCCCcccCCc--CCcHHHHHHHHHHHh
Confidence 88999999999887665 335788888887653
No 70
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=51.06 E-value=13 Score=24.23 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=14.1
Q ss_pred cceeEEEEcCCCcEEE
Q psy17586 42 HTIIMYLIDPEGLFVD 57 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~ 57 (106)
..-.+||+||+|+++.
T Consensus 108 ~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 108 ALPAVFLIDPDGKIRY 123 (124)
T ss_dssp ESEEEEEEETTSBEEE
T ss_pred eEeEEEEECCCCEEEe
Confidence 7789999999999874
No 71
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=50.68 E-value=33 Score=30.12 Aligned_cols=37 Identities=8% Similarity=-0.044 Sum_probs=31.2
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSII 73 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir 73 (106)
.|-|.--..+||+||+|+++..+.-..+.++|.+.|+
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 4777777889999999999999887888888877666
No 72
>PRK09381 trxA thioredoxin; Provisional
Probab=50.66 E-value=29 Score=22.42 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=29.5
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNM 76 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l 76 (106)
.|.|-....++++ ++|+.+..+.-..+.++|.+.|...+
T Consensus 70 ~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 70 KYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred hCCCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 4777777777777 69999988876777888777666554
No 73
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=50.53 E-value=11 Score=23.39 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=18.1
Q ss_pred ceeEecceeEEEEcCCCcEEEee
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYY 59 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f 59 (106)
+..+..+..+||+|.+|+++..=
T Consensus 47 ~~~~~~~g~~~ivd~~G~ii~hp 69 (81)
T PF02743_consen 47 NIKFGNNGYAFIVDKNGTIIAHP 69 (81)
T ss_dssp TSBBTTTBEEEEEETTSBBCE-S
T ss_pred eeEECCCEEEEEEECCCCEEEeC
Confidence 35567788999999999998763
No 74
>PF01295 Adenylate_cycl: Adenylate cyclase, class-I; InterPro: IPR000274 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria.; GO: 0004016 adenylate cyclase activity, 0006171 cAMP biosynthetic process
Probab=50.52 E-value=36 Score=30.42 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=35.7
Q ss_pred ecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 41 DHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 41 DHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
|.+..||++|-.|++..+.....+.++++..|.++...-.
T Consensus 526 ~~~~~vYILDE~n~l~~y~~~~~~~~~lv~~i~~fy~~~~ 565 (604)
T PF01295_consen 526 DNGFNVYILDEKNSLEHYQQCDGSKEELVREINRFYQSSE 565 (604)
T ss_pred CCceEEEEEcCCCcEEEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 5789999999999999999999999999999999886543
No 75
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=49.96 E-value=19 Score=22.73 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=15.0
Q ss_pred ceeEEEEcCCCcEEEeec
Q psy17586 43 TIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~ 60 (106)
...+|+.||+|..+.+..
T Consensus 107 ~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 107 ITSVYFRDPDGNLIELSN 124 (125)
T ss_pred ccEEEEECCCCCEEEeee
Confidence 457899999999998754
No 76
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=49.34 E-value=19 Score=23.45 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=16.5
Q ss_pred ecceeEEEEcCCCcEEEeec
Q psy17586 41 DHTIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 41 DHSa~iYLmDPdGrfv~~f~ 60 (106)
.+...+|+.||+|..+.++-
T Consensus 98 ~~~~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 98 GHGKAYRFRSPDGHPMELYW 117 (121)
T ss_pred CCcceEEEECCCCCEEEEEE
Confidence 45667899999999998874
No 77
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=48.78 E-value=17 Score=25.37 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=17.9
Q ss_pred ecceeEEEEcCCCcEEEeecCC
Q psy17586 41 DHTIIMYLIDPEGLFVDYYGQN 62 (106)
Q Consensus 41 DHSa~iYLmDPdGrfv~~f~~~ 62 (106)
++...+|+.||+|..+.++-..
T Consensus 111 ~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 111 DRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred CCcEEEEEECCCCcEEEeccCc
Confidence 4567899999999999997543
No 78
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=47.12 E-value=27 Score=22.50 Aligned_cols=17 Identities=18% Similarity=0.342 Sum_probs=14.6
Q ss_pred eEEEEcCCCcEEEeecC
Q psy17586 45 IMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~ 61 (106)
.+|+.||+|..+.++..
T Consensus 93 ~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 93 GVWFRDPDGNLLQVKVA 109 (112)
T ss_pred EEEEECCCCCEEEEecC
Confidence 58999999999998754
No 79
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=47.05 E-value=25 Score=22.41 Aligned_cols=18 Identities=17% Similarity=0.545 Sum_probs=14.8
Q ss_pred eeEEEEcCCCcEEEeecC
Q psy17586 44 IIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~ 61 (106)
..+|+.||+|..+.++..
T Consensus 100 ~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 100 YGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred eEEEEECCCCCEEEEEec
Confidence 468999999999988643
No 80
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=47.02 E-value=35 Score=26.95 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=30.1
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCC-CCHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQN-KKPEEVSNSIIVNM 76 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~-~speeiAe~Ir~~l 76 (106)
.|-|.+.-.+||+|++|+-+..+..+ .+.++|.+.|..+.
T Consensus 224 ~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 224 QLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred HcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 57899999999999966555544444 67888888777654
No 81
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=46.47 E-value=23 Score=23.14 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=15.2
Q ss_pred eeEEEEcCCCcEEEeecC
Q psy17586 44 IIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~ 61 (106)
.++|+.||+|..+.++--
T Consensus 100 ~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 100 GLIRFADPDGNRHELFWG 117 (120)
T ss_pred EEEEEECCCCCEEEEEec
Confidence 478999999999988743
No 82
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=46.31 E-value=40 Score=20.69 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=28.2
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVN 75 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~ 75 (106)
.|.|.....+.++ ++|+.+..+....+++++.+.|++.
T Consensus 63 ~~~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 63 KYGIRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred HcCCCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhh
Confidence 4778888888888 7898887776566677777766543
No 83
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=46.11 E-value=25 Score=23.01 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=16.2
Q ss_pred eeEEEEcCCCcEEEeecCC
Q psy17586 44 IIMYLIDPEGLFVDYYGQN 62 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~ 62 (106)
-.+|+.||+|..+.++..+
T Consensus 104 ~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 104 RGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred eEEEEECCCCCEEEEEecc
Confidence 5799999999999988653
No 84
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=45.98 E-value=48 Score=25.08 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=24.3
Q ss_pred ecceeEEEEcCCCcEEEeecCCCCHHHHHHHH
Q psy17586 41 DHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSI 72 (106)
Q Consensus 41 DHSa~iYLmDPdGrfv~~f~~~~speeiAe~I 72 (106)
+-|+.|.++|.+|+.+-+-.-..+++++.+.|
T Consensus 123 ~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi 154 (160)
T PF09695_consen 123 EESSAIIVLDKQGKVQFVKEGALSPAEVQQVI 154 (160)
T ss_pred CCCceEEEEcCCccEEEEECCCCCHHHHHHHH
Confidence 45677889999999776666667888876644
No 85
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=45.63 E-value=11 Score=23.61 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=15.7
Q ss_pred ceeEecceeEEEEcCCCcE
Q psy17586 37 WFQVDHTIIMYLIDPEGLF 55 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrf 55 (106)
.|.|.....++|+||+|+.
T Consensus 77 ~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 77 KYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HTT-TSSSEEEEEETTSBE
T ss_pred HCCCCcCCEEEEECCCCCC
Confidence 4788889999999999974
No 86
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=44.95 E-value=32 Score=21.32 Aligned_cols=37 Identities=11% Similarity=0.017 Sum_probs=27.1
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIV 74 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~ 74 (106)
.|.|.....++++++++. +..+.-..+.+++...|++
T Consensus 64 ~~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 64 RFGVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred hCCCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHh
Confidence 588999999999999987 4444545667776665554
No 87
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=44.76 E-value=26 Score=22.69 Aligned_cols=19 Identities=16% Similarity=0.483 Sum_probs=15.4
Q ss_pred cceeEEEEcCCCcEEEeec
Q psy17586 42 HTIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~ 60 (106)
+...+|+.||+|..+.++.
T Consensus 109 ~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 109 GYYALFFEDPDGIRLELVA 127 (128)
T ss_pred cEEEEEEECCCCcEEEEEe
Confidence 4457899999999988764
No 88
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=44.60 E-value=33 Score=24.18 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=30.0
Q ss_pred EEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHHhhhcCCc
Q psy17586 46 MYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKKKSW 87 (106)
Q Consensus 46 iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~~~~~~~~ 87 (106)
+.++|.+..|..--......+++.+.+.++++.+++.+.+-+
T Consensus 2 LlviD~Q~~f~~~~~~~~~~~~~v~~i~~li~~~r~~~~~Vi 43 (155)
T cd01014 2 LLVIDVQNGYFDGGLPPLNNEAALENIAALIAAARAAGIPVI 43 (155)
T ss_pred EEEEeCchhhhCCCCCcCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 567788887764322223578899999999998887776533
No 89
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=44.59 E-value=25 Score=22.35 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.3
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
..+|+.||+|..+.++.
T Consensus 94 ~~~~~~DP~Gn~i~~~~ 110 (112)
T cd07238 94 RRFFVRDPFGKLVNILT 110 (112)
T ss_pred EEEEEECCCCCEEEEEE
Confidence 46799999999998874
No 90
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=44.11 E-value=25 Score=22.61 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.0
Q ss_pred eeEEEEcCCCcEEEeecC
Q psy17586 44 IIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~ 61 (106)
..+|+.||+|..+.++..
T Consensus 102 ~~~~~~DPdG~~iEi~~~ 119 (125)
T cd07255 102 EALYLSDPEGNGIEIYAD 119 (125)
T ss_pred eEEEEECCCCCEEEEEEe
Confidence 468999999999987643
No 91
>PF03396 Pox_RNA_pol_35: Poxvirus DNA-directed RNA polymerase, 35 kD subunit; InterPro: IPR005059 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The DNA-dependent RNA polymerase from vaccinia virions has a molecular weight of approximately 500 kDa and can be dissociated into putative subunits of 140, 137, 37, 35, 31, 22, and 17 kDa. This group represents a DNA-directed RNA polymerase, 35 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0019083 viral transcription
Probab=44.01 E-value=1.1e+02 Score=25.21 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=41.3
Q ss_pred eeEEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 20 LMYSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 20 ~~y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
+-|-||-++.|.+ +++|.==|---.|+++|||.+..+ ..|.++-+-|-....+|+
T Consensus 73 ~~fcvyLkksQt~--~~~YisL~DfDYyiI~~d~~~~~v----dKp~EL~eTLlHtFqeYR 127 (292)
T PF03396_consen 73 VGFCVYLKKSQTE--DKNYISLYDFDYYIIDPDGTFIKV----DKPKELKETLLHTFQEYR 127 (292)
T ss_pred ccEEEEEeccccc--CcceEEEecccEEEECCCCCeeec----CCcHHHHHHHHHHHHhhh
Confidence 3377888877644 567887788889999999987766 567888886666666665
No 92
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=43.79 E-value=24 Score=20.23 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=22.6
Q ss_pred eeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
.-+|++|.+|.++..|+.-..+.+....-+..|.
T Consensus 2 k~V~~~d~~~~~i~~f~S~~eAa~~lg~~~~~I~ 35 (53)
T smart00497 2 KPVYVYDLDGNLIGEFSSIREAAKYLGISHSSIS 35 (53)
T ss_pred ccEEEEeCCCCEEEEecCHHHHHHHhCCCHHHHH
Confidence 3589999999999888766555555333233343
No 93
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=42.36 E-value=29 Score=22.48 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=14.3
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
..+|+.||+|..+.+..
T Consensus 102 r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 102 RVVRFYDPDKHIIEVGE 118 (120)
T ss_pred EEEEEECCCCCEEEEec
Confidence 47899999999988754
No 94
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=41.78 E-value=36 Score=22.23 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHH----HhhhcCCcchhh
Q psy17586 65 PEEVSNSIIVNMMKY----ENLKKKSWFEDT 91 (106)
Q Consensus 65 peeiAe~Ir~~l~~~----~~~~~~~~~~~~ 91 (106)
..+..+.++..++++ +.+++|.|.+=.
T Consensus 4 ~~~~~e~~~~~lke~~rvl~~arKP~~eEy~ 34 (65)
T COG2443 4 MMDKPEELREFLKEYRRVLKVARKPDWEEYS 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 456677888888776 589999998754
No 95
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=41.77 E-value=30 Score=22.96 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=15.4
Q ss_pred ceeEEEEcCCCcEEEeecC
Q psy17586 43 TIIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~ 61 (106)
..++|+.||+|..+.++-.
T Consensus 101 ~~~~~f~DPdG~~iE~~~~ 119 (124)
T cd08361 101 KAFIAFRDPSGNSIELVVR 119 (124)
T ss_pred ceEEEEECcCCCEEEEEEe
Confidence 3468999999999988743
No 96
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=41.62 E-value=28 Score=22.39 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=15.3
Q ss_pred ceeEEEEcCCCcEEEeec
Q psy17586 43 TIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~ 60 (106)
...+|+.||+|..+.++.
T Consensus 99 ~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 99 QDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred cceEEEECCCCCEEEEEE
Confidence 356999999999998874
No 97
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=41.60 E-value=28 Score=22.71 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.7
Q ss_pred ceeEEEEcCCCcEEEeec
Q psy17586 43 TIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~ 60 (106)
...+|+.||+|..+.++.
T Consensus 92 ~~~~~f~DPdG~~ie~~~ 109 (121)
T cd07244 92 GDSFYFLDPDGHKLELHV 109 (121)
T ss_pred ccEEEEECCCCCEEEEEe
Confidence 457999999999999984
No 98
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=41.32 E-value=27 Score=23.64 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=14.7
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
..+||||++|+.+....
T Consensus 111 ~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 111 RAVFVIDENGKVIYVEL 127 (143)
T ss_pred eEEEEEcCCCeEEEEEE
Confidence 47899999999988874
No 99
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=41.23 E-value=33 Score=21.85 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.1
Q ss_pred ceeEEEEcCCCcEEEee
Q psy17586 43 TIIMYLIDPEGLFVDYY 59 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f 59 (106)
+-.+|+.||+|..+.+-
T Consensus 107 ~~~~~~~DPdG~~iE~~ 123 (125)
T cd08357 107 QETFFLKDPSGNALEFK 123 (125)
T ss_pred eeEEEEECCCCCEEEEe
Confidence 46799999999988764
No 100
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=41.18 E-value=28 Score=23.31 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.7
Q ss_pred eeEEEEcCCCcEEEeecCC
Q psy17586 44 IIMYLIDPEGLFVDYYGQN 62 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~ 62 (106)
.++|+.||+|..+.++...
T Consensus 103 ~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 103 YFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred EEEEEECCCCCEEEEEccc
Confidence 3589999999999998543
No 101
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=40.66 E-value=37 Score=23.30 Aligned_cols=21 Identities=19% Similarity=0.564 Sum_probs=17.4
Q ss_pred eeEEEEcCCCcEEEeecCCCC
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKK 64 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~s 64 (106)
-..|+.||+|..+.++.+..+
T Consensus 124 ~~~~~~DPdG~~iel~~~~~~ 144 (150)
T TIGR00068 124 VIAFVEDPDGYKIELIQRKST 144 (150)
T ss_pred EEEEEECCCCCEEEEEECCch
Confidence 467899999999999876654
No 102
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=40.55 E-value=26 Score=21.18 Aligned_cols=35 Identities=11% Similarity=-0.042 Sum_probs=26.2
Q ss_pred CceeEecceeEEEEcCCCcEEEeecCCCCHHHHHH
Q psy17586 36 FWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSN 70 (106)
Q Consensus 36 ~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe 70 (106)
..|.|.....+++++++|+....+....+++++.+
T Consensus 65 ~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 65 SEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVE 99 (101)
T ss_pred HhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHh
Confidence 35889999999999999765666655567777654
No 103
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=40.54 E-value=67 Score=20.29 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=26.0
Q ss_pred EEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeec
Q psy17586 22 YSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 22 y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~ 60 (106)
||.|+.+.-.....|+..|+ |+|.+|+.++...
T Consensus 30 ~Rt~S~k~~~~~~~G~WrV~------V~~~~G~~l~~~~ 62 (66)
T PF11141_consen 30 WRTWSSKQNFPDQPGDWRVE------VVDEDGQVLGSLR 62 (66)
T ss_pred EEEEEEeecCCCCCcCEEEE------EEcCCCCEEEEEE
Confidence 89999887765556777665 8999999888754
No 104
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=40.35 E-value=32 Score=22.32 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=14.5
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
..+|+.||+|..+.+..
T Consensus 102 ~~~~~~DPdG~~ie~~~ 118 (120)
T cd08350 102 REFALVDPDGNLLRFGQ 118 (120)
T ss_pred eEEEEECCCCCEEEeec
Confidence 46899999999988764
No 105
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=40.33 E-value=34 Score=22.96 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=16.2
Q ss_pred ceeEEEEcCCCcEEEeecC
Q psy17586 43 TIIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~ 61 (106)
.-.+|+.||+|..+.++..
T Consensus 104 g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 104 GRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred ceEEEEECCCCCEEEEecC
Confidence 4589999999999999753
No 106
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=40.23 E-value=33 Score=23.18 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=20.3
Q ss_pred cceeEEEEcCCCcEEEeecCCCCHH
Q psy17586 42 HTIIMYLIDPEGLFVDYYGQNKKPE 66 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~~~~spe 66 (106)
+...+|+.||+|..+.+.....+++
T Consensus 100 ~~~~~~~~DPdGn~iEl~~~~~~~~ 124 (139)
T PRK04101 100 DKKSIYFTDPDGHKFEFHTGTLQDR 124 (139)
T ss_pred CceEEEEECCCCCEEEEEeCCHHHH
Confidence 5688999999999999877666443
No 107
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=40.14 E-value=31 Score=22.47 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=12.8
Q ss_pred eEEEEcCCCcEEEee
Q psy17586 45 IMYLIDPEGLFVDYY 59 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f 59 (106)
.+|+.||||..+.++
T Consensus 108 ~~~~~DPdG~~ie~~ 122 (124)
T cd09012 108 GRSFADLDGHLWEVL 122 (124)
T ss_pred EEEEECCCCCEEEEE
Confidence 369999999998875
No 108
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=39.93 E-value=22 Score=23.79 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=18.8
Q ss_pred ceeEecceeEEEEcCCCcEEEe
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDY 58 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~ 58 (106)
.|-|-..-.+||+|++|+.+..
T Consensus 94 ~~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 94 TFKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred HcCCCCCCEEEEECCCCCEEcc
Confidence 4788888999999999997754
No 109
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=39.88 E-value=32 Score=22.22 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.4
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
..+|+.||+|..+.++-
T Consensus 93 ~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 93 KRVTLTDPDGFPVELVY 109 (113)
T ss_pred eEEEEECCCCCEEEEEe
Confidence 47899999999998764
No 110
>PRK11478 putative lyase; Provisional
Probab=39.70 E-value=34 Score=22.17 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=14.7
Q ss_pred ceeEEEEcCCCcEEEeec
Q psy17586 43 TIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~ 60 (106)
...+|+.||+|..+.++.
T Consensus 111 ~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 111 KRFTFFNDPDGLPLELYE 128 (129)
T ss_pred CEEEEEECCCCCEEEEEe
Confidence 356899999999988764
No 111
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=39.27 E-value=34 Score=21.55 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.6
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
..+|+.||+|..+.++-
T Consensus 97 ~~~~~~DP~G~~ie~~~ 113 (117)
T cd07240 97 RGLRFQDPDGHLLELFV 113 (117)
T ss_pred eEEEEECCCCCEEEEEE
Confidence 57899999999998873
No 112
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=39.12 E-value=54 Score=20.46 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=27.9
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSI 72 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~I 72 (106)
.|.|.....+++++ +|+.+..+....+.++|.+.|
T Consensus 61 ~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 61 QFGVQALPTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred HcCCCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 58888888899997 999988877777777776643
No 113
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=38.13 E-value=36 Score=21.51 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.0
Q ss_pred cceeEEEEcCCCcEEEee
Q psy17586 42 HTIIMYLIDPEGLFVDYY 59 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f 59 (106)
+...+|+.||+|..+.++
T Consensus 96 ~~~~~~~~DPdG~~~~l~ 113 (114)
T cd07247 96 VGRFAVFADPEGAVFGLW 113 (114)
T ss_pred cEEEEEEECCCCCEEEeE
Confidence 456899999999988764
No 114
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=36.70 E-value=46 Score=18.78 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=15.6
Q ss_pred ceeEEEEcCCCcEEEeec
Q psy17586 43 TIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~ 60 (106)
...+.++|.+|++++++.
T Consensus 30 ~~~~~V~d~~~~~~G~is 47 (57)
T PF00571_consen 30 ISRLPVVDEDGKLVGIIS 47 (57)
T ss_dssp SSEEEEESTTSBEEEEEE
T ss_pred CcEEEEEecCCEEEEEEE
Confidence 556899999999999976
No 115
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=36.46 E-value=51 Score=21.01 Aligned_cols=35 Identities=14% Similarity=-0.009 Sum_probs=28.4
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSI 72 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~I 72 (106)
.|.|.+...+++++ +|+.+..+.-..+.+++.+.|
T Consensus 62 ~~~v~~vPt~~i~~-~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 62 AAGIMGTPTVQFFK-DKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred HCCCeeccEEEEEE-CCeEEEEEeCCccHHHHHHhh
Confidence 57889999999995 899999888878887766544
No 116
>PF02625 XdhC_CoxI: XdhC and CoxI family; InterPro: IPR003777 This entry is often found in association with an NAD-binding region, related to TrkA-N (IPR003148 from INTERPRO). XdhC is believed to be involved in the attachment of molybdenum to Xanthine Dehydrogenase [].; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=36.32 E-value=84 Score=19.93 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=29.4
Q ss_pred cceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 42 HTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
......|+.+||+....+.-+.--.++.+..+..|++.+
T Consensus 25 ~~Ga~mlv~~dg~~~GtigGG~lE~~v~~~A~~~l~~g~ 63 (71)
T PF02625_consen 25 KVGAKMLVTPDGETIGTIGGGCLEADVIERAREALAEGR 63 (71)
T ss_dssp GTT-EEEEETTS-EEE-SSSSCHHHHHHHHHHHHHHHT-
T ss_pred cccCeEEEeCCCcEEEEeCcHHHHHHHHHHHHHHHHhCC
Confidence 456778999999999999988888888888888885543
No 117
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=36.30 E-value=39 Score=23.55 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=16.2
Q ss_pred ceeEEEEcCCCcEEEeecCC
Q psy17586 43 TIIMYLIDPEGLFVDYYGQN 62 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~ 62 (106)
..++|+-||+|..+.++.-.
T Consensus 107 ~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 107 QIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred CEEEEEECCCCCEEEEEcCc
Confidence 44789999999999988543
No 118
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=36.26 E-value=39 Score=21.83 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.6
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
..+|+-||+|..+.++.
T Consensus 102 ~~~~~~DPdG~~iE~~~ 118 (122)
T cd07265 102 RRVRFQLPSGHTMELYA 118 (122)
T ss_pred eEEEEECCCCCEEEEEE
Confidence 47899999999998864
No 119
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=36.01 E-value=28 Score=23.56 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=18.8
Q ss_pred ceeEecceeEEEEcCCCcEEEe
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDY 58 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~ 58 (106)
.|-|...-.+||+|++|+.+..
T Consensus 94 ~~~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 94 QFKVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred HcCCCCCCEEEEECCCCCEEch
Confidence 3788899999999999997754
No 120
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=35.92 E-value=39 Score=23.99 Aligned_cols=21 Identities=29% Similarity=0.714 Sum_probs=17.0
Q ss_pred ecceeEEEEcCCCcEEEeecC
Q psy17586 41 DHTIIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 41 DHSa~iYLmDPdGrfv~~f~~ 61 (106)
+.+.++|+.||+|..+.++..
T Consensus 107 ~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 107 QQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CCceEEEEECCCCCEEEEEEc
Confidence 444569999999999988765
No 121
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=35.47 E-value=45 Score=21.29 Aligned_cols=16 Identities=19% Similarity=0.603 Sum_probs=13.5
Q ss_pred eEEEEcCCCcEEEeec
Q psy17586 45 IMYLIDPEGLFVDYYG 60 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~ 60 (106)
..|+.||+|..+.++.
T Consensus 109 ~~~~~DPdG~~~~~~~ 124 (125)
T cd07264 109 VAYVRDINGFLIELCS 124 (125)
T ss_pred EEEEECCCCCEEEEec
Confidence 5689999999988764
No 122
>PF13728 TraF: F plasmid transfer operon protein
Probab=35.08 E-value=53 Score=25.11 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=26.9
Q ss_pred eeEecceeEEEEcCCCcEEEeecCCC-CHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEGLFVDYYGQNK-KPEEVSNSI 72 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdGrfv~~f~~~~-speeiAe~I 72 (106)
+-|.++-.+||++|+++-..-+.++. +.++|.++|
T Consensus 179 l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 179 LGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred cCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 67889999999999995555555555 677887765
No 123
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.93 E-value=42 Score=21.06 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=13.8
Q ss_pred ceeEEEEcCCCcEEEee
Q psy17586 43 TIIMYLIDPEGLFVDYY 59 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f 59 (106)
...+|+.||+|..+.++
T Consensus 108 ~~~~~~~DP~G~~iEl~ 124 (125)
T cd08352 108 KRFTFFYDPDGLPLELY 124 (125)
T ss_pred eEEEEEECCCCCEEEec
Confidence 34689999999988875
No 124
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=34.89 E-value=37 Score=20.66 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=11.5
Q ss_pred eeEEEEcCCCcEEE
Q psy17586 44 IIMYLIDPEGLFVD 57 (106)
Q Consensus 44 a~iYLmDPdGrfv~ 57 (106)
-.+|+.||+|..+.
T Consensus 100 ~~~~~~DP~G~~iE 113 (114)
T cd07245 100 RQLFVRDPDGNRIE 113 (114)
T ss_pred cEEEEECCCCCEEe
Confidence 46899999998765
No 125
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=34.87 E-value=59 Score=21.52 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=28.8
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIV 74 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~ 74 (106)
.|-|.....++++ ++|+.+..+....+.+++.+-|++
T Consensus 74 ~~~V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 74 KLGAHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred HcCCccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhc
Confidence 4788888888888 599988887777777777766553
No 126
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=34.57 E-value=43 Score=20.37 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.0
Q ss_pred ceeEEEEcCCCcEEEe
Q psy17586 43 TIIMYLIDPEGLFVDY 58 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~ 58 (106)
...++++|++|+++..
T Consensus 5 p~~i~v~D~~~~i~~~ 20 (110)
T PF08448_consen 5 PDGIFVIDPDGRIVYA 20 (110)
T ss_dssp SSEEEEEETTSBEEEE
T ss_pred CceeEEECCCCEEEEE
Confidence 3568899999998875
No 127
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=34.31 E-value=45 Score=20.95 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=14.6
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
..+|+.||+|..+.++.
T Consensus 94 ~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 94 RSIYFYDPDGHLLELHA 110 (113)
T ss_pred eEEEEECCCCCEEEEEe
Confidence 58899999999988874
No 128
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=34.27 E-value=71 Score=19.63 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=29.0
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIV 74 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~ 74 (106)
.|.|.....+.++ .+|+.+..+....++++|.+-|++
T Consensus 66 ~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 66 KYGVKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp HTTCSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred ccCCCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 5889888888888 566666677777899999887765
No 129
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=34.09 E-value=80 Score=22.87 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=18.2
Q ss_pred ceeEecceeEEEEcCCCcEEEe
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDY 58 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~ 58 (106)
.|-|.--..+||+||+|+.+..
T Consensus 107 ~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 107 QFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HcCCCCCCEEEEECCCCcEEee
Confidence 3667777889999999998865
No 130
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=33.44 E-value=71 Score=21.87 Aligned_cols=37 Identities=11% Similarity=0.266 Sum_probs=22.6
Q ss_pred eeEEEEcCCCcEEEeecCCCCH-----HHHHHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKP-----EEVSNSIIVNMMKYE 80 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~sp-----eeiAe~Ir~~l~~~~ 80 (106)
-.++++|++|+.+-.+..+... ..+.+.+..+++.-.
T Consensus 51 d~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
T PF05228_consen 51 DLIFILDPDGRVLYSSSKGYDFEPGSFDPIPPSLSQLISDLR 92 (161)
T ss_pred cEEEEEcCCCCEEEEeccCcccCccccccccHHHHHHHHHHH
Confidence 4689999999999633333322 224456666665544
No 131
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=33.41 E-value=42 Score=22.37 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=14.3
Q ss_pred cceeEEEEcCCCcEEEee
Q psy17586 42 HTIIMYLIDPEGLFVDYY 59 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f 59 (106)
--..+||+|++|+.+-..
T Consensus 129 ~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 129 QLPGVFVIGPDGTILFAH 146 (149)
T ss_pred ccceEEEECCCCeEEEEe
Confidence 356899999999977654
No 132
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=33.40 E-value=29 Score=24.21 Aligned_cols=46 Identities=11% Similarity=0.001 Sum_probs=33.2
Q ss_pred eeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHHhhhcCCcch
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKKKSWFE 89 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~~~~~~~~~~ 89 (106)
+.+.++|-+..|..........+++.+.+.++++.+++.+.+-++.
T Consensus 1 TaLlvID~Q~~f~~~~~~~~~~~~~i~~i~~l~~~~r~~~~~Vi~~ 46 (174)
T PF00857_consen 1 TALLVIDMQNDFINGSLAPPNAEAIIPNINRLLDAARAAGVPVIHT 46 (174)
T ss_dssp EEEEEES-BHHHHTSTTTSTTHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CEEEEEeChhhhhcCCccccCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 4577888888888333444567889999999999998877655443
No 133
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=33.29 E-value=44 Score=20.74 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=13.3
Q ss_pred eeEEEEcCCCcEEEee
Q psy17586 44 IIMYLIDPEGLFVDYY 59 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f 59 (106)
..+|+.||+|..+.+.
T Consensus 96 ~~~~~~DP~G~~ie~~ 111 (112)
T cd08349 96 REFAVRDPDGNLLRFG 111 (112)
T ss_pred EEEEEECCCCCEEEec
Confidence 5679999999988764
No 134
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=33.24 E-value=34 Score=23.04 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=17.1
Q ss_pred ceeEEEEcCCCcEEEeecCCC
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNK 63 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~ 63 (106)
...+|+.||+|..+.++....
T Consensus 97 ~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 97 RKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred ceEEEEECCCCCEEEEecCcH
Confidence 357899999999999977543
No 135
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=33.20 E-value=44 Score=23.04 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=14.8
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
.++|+.||+|..+.++.
T Consensus 108 ~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 108 QTIYFFDPSGNRNETFA 124 (143)
T ss_pred eEEEEECCCCCEEEEec
Confidence 56999999999999864
No 136
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=32.90 E-value=49 Score=21.25 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.4
Q ss_pred eeEEEEcCCCcEEEee
Q psy17586 44 IIMYLIDPEGLFVDYY 59 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f 59 (106)
-.+|+.||+|..+.++
T Consensus 107 ~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 107 YAAYVRDPDGNKIEAV 122 (123)
T ss_pred EEEEEECCCCCEEEEe
Confidence 3689999999988765
No 137
>PRK10291 glyoxalase I; Provisional
Probab=32.63 E-value=42 Score=22.14 Aligned_cols=20 Identities=20% Similarity=0.604 Sum_probs=16.5
Q ss_pred eeEEEEcCCCcEEEeecCCC
Q psy17586 44 IIMYLIDPEGLFVDYYGQNK 63 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~ 63 (106)
...|+.||+|..+.++....
T Consensus 103 ~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 103 VIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred EEEEEECCCCCEEEEEEccc
Confidence 35788999999999987654
No 138
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=32.36 E-value=48 Score=21.01 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=13.4
Q ss_pred eeEEEEcCCCcEEEee
Q psy17586 44 IIMYLIDPEGLFVDYY 59 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f 59 (106)
...|+.||+|..+.++
T Consensus 98 ~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 98 YTFVALDPDGHRLRVF 113 (114)
T ss_pred cEEEEECCCCCEEEee
Confidence 3579999999998875
No 139
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=32.35 E-value=44 Score=19.85 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=13.0
Q ss_pred cceeEEEEcCCCcEEE
Q psy17586 42 HTIIMYLIDPEGLFVD 57 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~ 57 (106)
....+|+.||+|....
T Consensus 96 ~~~~~~~~Dp~G~~~~ 111 (112)
T cd06587 96 GGRVAYFRDPDGNLIE 111 (112)
T ss_pred CcEEEEEECCCCcEEe
Confidence 3578999999998764
No 140
>KOG0180|consensus
Probab=32.15 E-value=56 Score=25.55 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=40.4
Q ss_pred CCceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHH-HHHHhhhcCCcchh
Q psy17586 35 IFWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNM-MKYENLKKKSWFED 90 (106)
Q Consensus 35 ~~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l-~~~~~~~~~~~~~~ 90 (106)
.+|+.|.-|+.=+|+ |-.-.++.++..||++.+.|.+.| .+..|+-+++|=+.
T Consensus 132 ~~DFVvsGTa~e~L~---GmCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~ 185 (204)
T KOG0180|consen 132 PKDFVVSGTASEQLY---GMCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAV 185 (204)
T ss_pred cCCeEEecchHHHHH---HHHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeE
Confidence 356777777666665 344567899999999999888776 66779999999653
No 141
>smart00594 UAS UAS domain.
Probab=31.40 E-value=75 Score=21.54 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=28.4
Q ss_pred ceeEecceeEEEEcCCC-----cEEEeecCCCCHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEG-----LFVDYYGQNKKPEEVSNSI 72 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdG-----rfv~~f~~~~speeiAe~I 72 (106)
-|.+.---.+-++||+| ..+..+.-..++++++..|
T Consensus 81 ~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 81 FYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred hcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 37777788999999998 4566777777899988765
No 142
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=31.31 E-value=45 Score=21.38 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEEcCCCcEE-----EeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 46 MYLIDPEGLFV-----DYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 46 iYLmDPdGrfv-----~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
.|.++|||.+. .+--.+.+.+++.+.|+..++++-
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~~~ 71 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQKYY 71 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTTTS
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHHHHHHHh
Confidence 45556666533 333567899999999998886643
No 143
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.08 E-value=59 Score=20.57 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.0
Q ss_pred cceeEEEEcCCCcEEEeec
Q psy17586 42 HTIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~ 60 (106)
+.-.+|+.||+|..+.++.
T Consensus 103 ~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 103 GGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred CeeEEEEECCCCCEEEEec
Confidence 3456899999999988753
No 144
>PRK02134 hypothetical protein; Provisional
Probab=31.06 E-value=50 Score=25.91 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=29.1
Q ss_pred EEEcCCCcEEEeec-----CCCCHHHHHHHHHHHHHHHHh-hhcC
Q psy17586 47 YLIDPEGLFVDYYG-----QNKKPEEVSNSIIVNMMKYEN-LKKK 85 (106)
Q Consensus 47 YLmDPdGrfv~~f~-----~~~speeiAe~Ir~~l~~~~~-~~~~ 85 (106)
=|+|++|.|...+. ...+++++...++.-|+++.. .|.+
T Consensus 75 sL~d~~G~F~~~~~~~~~~~~~~~~ev~~E~~aQi~~f~~~~G~~ 119 (249)
T PRK02134 75 SLTDRDGLLGKWIWQLAEEGTLPLEEIAQELAAQYERFLSLFGRK 119 (249)
T ss_pred CCcCCCCCccHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhCCC
Confidence 48899999876432 356788999999999988887 4544
No 145
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=31.00 E-value=57 Score=20.96 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.1
Q ss_pred eEEEEcCCCcEEEeec
Q psy17586 45 IMYLIDPEGLFVDYYG 60 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~ 60 (106)
..++.||+|..+.+..
T Consensus 106 ~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 106 EFTARDPEGNLWTFGT 121 (122)
T ss_pred EEEEECCCCCEEEEec
Confidence 4789999999888753
No 146
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=30.82 E-value=54 Score=21.02 Aligned_cols=16 Identities=31% Similarity=0.604 Sum_probs=13.5
Q ss_pred eeEEEEcCCCcEEEee
Q psy17586 44 IIMYLIDPEGLFVDYY 59 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f 59 (106)
...|+-||+|..+.++
T Consensus 106 ~~~~~~DPdG~~iel~ 121 (122)
T cd07235 106 RYAIVKDPDGNLVDLF 121 (122)
T ss_pred EEEEEECCCCCEEEEe
Confidence 4579999999998875
No 147
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=30.55 E-value=1.1e+02 Score=23.64 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=33.5
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
.|.|..-..+++++ +|+.+.+.....+.+++.+-+....+...
T Consensus 101 ~~~I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 101 RFAIKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred HcCCCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence 58888888899997 89988887766788888887766665443
No 148
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=30.52 E-value=52 Score=20.79 Aligned_cols=17 Identities=24% Similarity=0.675 Sum_probs=13.2
Q ss_pred cceeEEEEcCCCcEEEe
Q psy17586 42 HTIIMYLIDPEGLFVDY 58 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~ 58 (106)
....+|+.||+|..+.+
T Consensus 104 ~~~~~~~~DpdG~~iE~ 120 (121)
T cd07233 104 MKGIAFIKDPDGYWIEL 120 (121)
T ss_pred CceEEEEECCCCCEEEe
Confidence 34568999999988765
No 149
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.40 E-value=59 Score=20.09 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=13.9
Q ss_pred ceeEEEEcCCCcEEEee
Q psy17586 43 TIIMYLIDPEGLFVDYY 59 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f 59 (106)
.-.+|+.||+|..+.+.
T Consensus 102 ~~~~~~~DP~G~~ie~~ 118 (119)
T cd07263 102 GTVAVFRDPDGNLFVLV 118 (119)
T ss_pred ceEEEEECCCCCEEEEe
Confidence 46899999999887763
No 150
>PRK09450 cyaA adenylate cyclase; Provisional
Probab=30.32 E-value=1e+02 Score=28.81 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=34.7
Q ss_pred ecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 41 DHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 41 DHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
+++..||++|-.|++-.+.....+.++++..|.++...
T Consensus 750 ~~~~~vyIlDE~n~l~~y~~~~~~~~~lv~~v~rf~~~ 787 (830)
T PRK09450 750 EDGFNVYILDESNRLEHYHHCEGSKEELVRDVSRFYSS 787 (830)
T ss_pred CCceEEEEEcCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999843
No 151
>KOG4614|consensus
Probab=29.90 E-value=1.1e+02 Score=25.02 Aligned_cols=29 Identities=28% Similarity=0.161 Sum_probs=21.7
Q ss_pred cceeEEEEcCCCcEEEeecCCCCHHHHHH
Q psy17586 42 HTIIMYLIDPEGLFVDYYGQNKKPEEVSN 70 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~~~~speeiAe 70 (106)
-|..+||+|..|+++=.=--..+|+|+-+
T Consensus 247 l~GyV~L~D~s~kIRW~g~G~aTp~Eve~ 275 (287)
T KOG4614|consen 247 LTGYVLLLDKSGKIRWQGFGTATPEEVEQ 275 (287)
T ss_pred eeEEEEEEccCceEEEeecCCCCHHHHHH
Confidence 47789999999998766555557777544
No 152
>KOG0852|consensus
Probab=29.68 E-value=81 Score=24.68 Aligned_cols=37 Identities=11% Similarity=0.259 Sum_probs=25.9
Q ss_pred eeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
..++++||+|.++..--.......-++...+++++++
T Consensus 125 RglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 125 RGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQ 161 (196)
T ss_pred eeeEEEccccceEEeeecccCCCccHHHHHHHHHHHh
Confidence 4689999999988765555555555555556777775
No 153
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=29.63 E-value=59 Score=22.96 Aligned_cols=19 Identities=26% Similarity=0.660 Sum_probs=16.4
Q ss_pred eeEEEEcCCCcEEEeecCC
Q psy17586 44 IIMYLIDPEGLFVDYYGQN 62 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~ 62 (106)
..+|+.||+|..+.++.+.
T Consensus 134 ~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 134 RMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred EEEEEECCCCCEEEEEEcC
Confidence 4789999999999998754
No 154
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=29.25 E-value=60 Score=19.29 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=14.7
Q ss_pred eEEEEcCCCcEEEeecCCC
Q psy17586 45 IMYLIDPEGLFVDYYGQNK 63 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~ 63 (106)
..++|.|+|+|+..-..+.
T Consensus 7 ~aiVlT~dGeF~~ik~~~~ 25 (56)
T PF12791_consen 7 YAIVLTPDGEFIKIKRKPG 25 (56)
T ss_pred EEEEEcCCCcEEEEeCCCC
Confidence 4789999999999754433
No 155
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=29.22 E-value=67 Score=22.30 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=17.1
Q ss_pred ecceeEEEEcCCCcEEEeecCC
Q psy17586 41 DHTIIMYLIDPEGLFVDYYGQN 62 (106)
Q Consensus 41 DHSa~iYLmDPdGrfv~~f~~~ 62 (106)
....++|+-||+|..+.+.-..
T Consensus 94 ~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 94 SDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred CCCEEEEEECCCCCEEEEEeCc
Confidence 3446789999999999886544
No 156
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=28.87 E-value=72 Score=21.07 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=14.8
Q ss_pred eEEEEcCCCcEEEeecCC
Q psy17586 45 IMYLIDPEGLFVDYYGQN 62 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~ 62 (106)
.+|+.||+|..+.+....
T Consensus 101 ~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 101 FLYFRDPDGNRVELSAEM 118 (131)
T ss_pred EEEEECCCCCEEEEEcCC
Confidence 579999999999887543
No 157
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=28.70 E-value=61 Score=19.68 Aligned_cols=15 Identities=27% Similarity=0.817 Sum_probs=12.3
Q ss_pred eEEEEcCCCcEEEee
Q psy17586 45 IMYLIDPEGLFVDYY 59 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f 59 (106)
.+|+.||+|..+.+.
T Consensus 123 ~~~~~dp~g~~~e~~ 137 (138)
T COG0346 123 HVYFRDPDGILIELA 137 (138)
T ss_pred EEEEECCCCcEEEee
Confidence 899999999877654
No 158
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.52 E-value=58 Score=23.51 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.3
Q ss_pred EEEeecCCCCHHHHHHHHHHHHH
Q psy17586 55 FVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 55 fv~~f~~~~speeiAe~Ir~~l~ 77 (106)
|-+.|+++++++++++.|++.|+
T Consensus 111 v~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 111 FDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred CCEEECcCCCHHHHHHHHHHHhc
Confidence 77899999999999999988763
No 159
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=28.25 E-value=48 Score=20.38 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=11.4
Q ss_pred cceeEEEEcCCCcEEEeec
Q psy17586 42 HTIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~ 60 (106)
....+-+++|||+++++..
T Consensus 25 ~~g~~aa~~pdG~lvAL~~ 43 (56)
T PF09142_consen 25 PPGPVAAFAPDGRLVALLE 43 (56)
T ss_dssp --S-EEEE-TTS-EEEEEE
T ss_pred CCceEEEECCCCcEEEEEE
Confidence 3445668999999999873
No 160
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=27.64 E-value=61 Score=22.76 Aligned_cols=18 Identities=33% Similarity=0.768 Sum_probs=15.0
Q ss_pred eeEEEEcCCCcEEEeecC
Q psy17586 44 IIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~ 61 (106)
.++|+.||+|..+.++..
T Consensus 106 ~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 106 FFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred eEEEEECCCCCeEEEeec
Confidence 469999999999998743
No 161
>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae.
Probab=27.55 E-value=2.3e+02 Score=20.14 Aligned_cols=46 Identities=9% Similarity=0.148 Sum_probs=36.5
Q ss_pred CCceeEecceeEEEEcCCCcEEEeecC-----CCCHHHHHHHHHHHHHHHH
Q psy17586 35 IFWFQVDHTIIMYLIDPEGLFVDYYGQ-----NKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 35 ~~dY~VDHSa~iYLmDPdGrfv~~f~~-----~~speeiAe~Ir~~l~~~~ 80 (106)
+-+|.||---..-+.|.|||+..+--+ +.+-.+++++|...|.+-+
T Consensus 43 ~itysvdlGDv~avaNSdGrL~~LtLhpgv~t~YshgeLaerlN~ai~alr 93 (109)
T PF10921_consen 43 TITYSVDLGDVRAVANSDGRLLELTLHPGVMTGYSHGELAERLNTAITALR 93 (109)
T ss_pred cceeeccCCcEEEEecCCCcEEEEEeccchhcCcchHHHHHHHHHHHHHHH
Confidence 447889888899999999999887533 3467899999998886654
No 162
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=27.46 E-value=60 Score=22.48 Aligned_cols=17 Identities=29% Similarity=0.919 Sum_probs=14.4
Q ss_pred eEEEEcCCCcEEEeecC
Q psy17586 45 IMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~ 61 (106)
++|+.||+|..+.++..
T Consensus 101 ~~yf~DPdG~~iE~~~~ 117 (144)
T cd07239 101 FAYFLDPGGFVIEYTSE 117 (144)
T ss_pred EEEEECCCCcEEEeccC
Confidence 48999999999987654
No 163
>PHA02533 17 large terminase protein; Provisional
Probab=27.42 E-value=1.3e+02 Score=26.40 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=31.8
Q ss_pred eeEEEEcCC---CcEEEeecC-CCCHHHHHHHHHHHHHHHHhh
Q psy17586 44 IIMYLIDPE---GLFVDYYGQ-NKKPEEVSNSIIVNMMKYENL 82 (106)
Q Consensus 44 a~iYLmDPd---Grfv~~f~~-~~speeiAe~Ir~~l~~~~~~ 82 (106)
+.+-++||. +|.++.+.. +.++...|+.|..+.+.|..+
T Consensus 331 s~~~V~~~~~~~~r~v~~~~~~~~~~~~~a~~I~~l~~~Yn~a 373 (534)
T PHA02533 331 SALHIIDITEYPYKQVAVYHNNTISPLILPDIIVDYLMEYNEA 373 (534)
T ss_pred eEEEEEccCCCCcEEEEEEecCCCCHHHHHHHHHHHHHHhCce
Confidence 445788898 999999864 478999999999999988533
No 164
>PRK06724 hypothetical protein; Provisional
Probab=27.22 E-value=65 Score=22.04 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=14.6
Q ss_pred eeEEEEcCCCcEEEeecC
Q psy17586 44 IIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~ 61 (106)
-.+|+.||||..+.++-.
T Consensus 106 ~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 106 YTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred EEEEEECCCCCEEEEEeC
Confidence 467899999999987643
No 165
>PF15384 DUF4610: Domain of unknown function (DUF4610)
Probab=27.22 E-value=1.3e+02 Score=23.67 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=40.9
Q ss_pred eEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHH--HhhhcCCcchhhhhhhccCCCCCCC
Q psy17586 39 QVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY--ENLKKKSWFEDTIESLTSSGKPAQN 104 (106)
Q Consensus 39 ~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (106)
+.||++.+.|=... .-+.+=-+..+.-+-+++|+.++-.. +...+..=++++.+.+++-+|+.++
T Consensus 84 lqed~a~Ltls~g~-s~L~~dL~k~p~~Ea~~~Lq~L~f~lAe~v~~Le~~Laa~~~~a~sp~Ks~~~ 150 (197)
T PF15384_consen 84 LQEDRASLTLSGGP-SALTFDLSKVPAPEAAPRLQALTFRLAERVCSLERRLAAVEETAASPRKSPQP 150 (197)
T ss_pred EecCeEEEEecCCC-ccceEEhhhCCCchhhHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCc
Confidence 45888888884333 33444444555556677888877332 3444455566788888888888754
No 166
>TIGR01570 A_thal_3588 uncharacterized plant-specific domain TIGR01570. This model represents a region of about 170 amino acids found at the C-terminus of a family of plant proteins. These proteins typically have additional highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterized protein. At least 12 distinct members are found in Arabidopsis thaliana.
Probab=27.16 E-value=40 Score=25.65 Aligned_cols=12 Identities=42% Similarity=0.839 Sum_probs=9.9
Q ss_pred ceeEEEEcCCCc
Q psy17586 43 TIIMYLIDPEGL 54 (106)
Q Consensus 43 Sa~iYLmDPdGr 54 (106)
|-.+|+|||+|.
T Consensus 138 SEsfyminPdg~ 149 (161)
T TIGR01570 138 SESFYMINPEGN 149 (161)
T ss_pred ceeEEeECCCCC
Confidence 557899999985
No 167
>PF11065 DUF2866: Protein of unknown function (DUF2866); InterPro: IPR021294 This bacterial family of proteins have no known function.
Probab=27.08 E-value=76 Score=20.78 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=21.3
Q ss_pred EcCCCcEE-EeecCCCCHHHHHHHHHHHH
Q psy17586 49 IDPEGLFV-DYYGQNKKPEEVSNSIIVNM 76 (106)
Q Consensus 49 mDPdGrfv-~~f~~~~speeiAe~Ir~~l 76 (106)
||-+|+.. ..++.+.++.+|++.|+...
T Consensus 27 i~~~g~~~RrvVpa~~T~~EIa~~ir~hv 55 (65)
T PF11065_consen 27 IDHDGRISRRVVPADSTEAEIAEAIRSHV 55 (65)
T ss_pred ecCCcceeEEeecccCChHHHHHHHHccC
Confidence 56667654 45688889999999998776
No 168
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=26.82 E-value=40 Score=25.72 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=10.3
Q ss_pred ceeEEEEcCCCcE
Q psy17586 43 TIIMYLIDPEGLF 55 (106)
Q Consensus 43 Sa~iYLmDPdGrf 55 (106)
|=.+|+|||||.-
T Consensus 143 SEsfyminPdg~~ 155 (166)
T PF04759_consen 143 SESFYMINPDGNG 155 (166)
T ss_pred cceeEEECCCCCC
Confidence 4578999999953
No 169
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=26.74 E-value=1.1e+02 Score=18.25 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCcEEEeecCCCC-HHHHHHHHHHHHHHH
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNKK-PEEVSNSIIVNMMKY 79 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~s-peeiAe~Ir~~l~~~ 79 (106)
...-+.+|++|++...---..+ ...+-+...+.++.+
T Consensus 12 v~v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~ 49 (74)
T TIGR01352 12 VVVRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKA 49 (74)
T ss_pred EEEEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhC
Confidence 3456899999998765322222 234444445555554
No 170
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=26.62 E-value=74 Score=20.19 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.0
Q ss_pred ceeEEEEcCCCcEEEee
Q psy17586 43 TIIMYLIDPEGLFVDYY 59 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f 59 (106)
...+|+.||+|..+.++
T Consensus 102 ~~~~~~~DP~G~~ie~~ 118 (119)
T cd08359 102 QRHFIVRDPNGVLIDIV 118 (119)
T ss_pred ceEEEEECCCCCEEEEE
Confidence 35789999999988875
No 171
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=26.58 E-value=76 Score=19.62 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.6
Q ss_pred ceeEEEEcCCCcEEEeecC
Q psy17586 43 TIIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~ 61 (106)
...++++|.+|++++++..
T Consensus 25 ~~~~~v~d~~~~~~G~v~~ 43 (114)
T cd04604 25 LGMTAVVDEDGRLVGIFTD 43 (114)
T ss_pred ccEEEEEcCCCCEEEEech
Confidence 4577899999999999874
No 172
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=26.57 E-value=38 Score=24.32 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=11.1
Q ss_pred ceeEecceeEEEEcCCCcE
Q psy17586 37 WFQVDHTIIMYLIDPEGLF 55 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrf 55 (106)
.|.+|.- .-|++||.|+|
T Consensus 103 ~~~~~~~-t~~~INPtGrF 120 (120)
T PF02772_consen 103 EYLLDED-TKILINPTGRF 120 (120)
T ss_dssp GGG-BTT--EEEESTTS--
T ss_pred cccCCCC-cEEEECCCCCC
Confidence 3557766 88999999997
No 173
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=26.23 E-value=1.5e+02 Score=20.33 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=28.4
Q ss_pred EecceeEEEE---cCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 40 VDHTIIMYLI---DPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 40 VDHSa~iYLm---DPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
+..-.++-++ +.+..++..+.-..+|+++...|+.++.+
T Consensus 74 ~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 74 ERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred CCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 3345556666 55556677777788999999999988754
No 174
>PRK10996 thioredoxin 2; Provisional
Probab=26.20 E-value=1.2e+02 Score=21.06 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=28.6
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVN 75 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~ 75 (106)
.|-|.....+.++ ++|+.+..+.-..+.+++.+.|.++
T Consensus 101 ~~~V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 101 RFRIRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred hcCCCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 5778777777766 5999998887777777777766554
No 175
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=26.05 E-value=65 Score=29.11 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=32.6
Q ss_pred cceeEEEEcCCCcEEEeecCCCCHHHHHH--HHHHHHHHHHhhhcCCcchhhhhhhccCCCC
Q psy17586 42 HTIIMYLIDPEGLFVDYYGQNKKPEEVSN--SIIVNMMKYENLKKKSWFEDTIESLTSSGKP 101 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~~~~speeiAe--~Ir~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (106)
-|+.+|||||+|..+..-..+.+---+-. ..|.++.+.-+.++...|+ -=+++|+|
T Consensus 99 ~ss~iYlid~~G~~iaASNw~~p~SFVG~nyafRpYf~~Am~gg~~r~ya----lGtts~~p 156 (603)
T COG4191 99 GSSAIYLIDPTGLTLAASNWNLPTSFVGRNYAFRPYFQDAMAGGSGRFYA----LGTTSGRP 156 (603)
T ss_pred cCCeEEEECCCCcEEeeccCCCCCcccccCcccHHHHHHHHhcCCceeEe----eccccCCC
Confidence 47889999999999988766553322222 3455554444444444443 22455554
No 176
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=25.78 E-value=75 Score=19.98 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=13.6
Q ss_pred cceeEEEEcCCCcEEEe
Q psy17586 42 HTIIMYLIDPEGLFVDY 58 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~ 58 (106)
....+|+.||+|..+.+
T Consensus 109 ~~~~~~~~DP~G~~iE~ 125 (126)
T cd08346 109 GERSIYFEDPDGLRLEL 125 (126)
T ss_pred ceEEEEEECCCCCEEEe
Confidence 35678999999988765
No 177
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=25.76 E-value=99 Score=21.63 Aligned_cols=20 Identities=5% Similarity=-0.280 Sum_probs=15.6
Q ss_pred EecceeEEEEcCCCcEEEee
Q psy17586 40 VDHTIIMYLIDPEGLFVDYY 59 (106)
Q Consensus 40 VDHSa~iYLmDPdGrfv~~f 59 (106)
+.=.-.+.++||+|+.+..+
T Consensus 78 ~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 78 QGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred CCCCCEEEEECCCCCEEeee
Confidence 44567899999999999443
No 178
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.73 E-value=76 Score=19.91 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.1
Q ss_pred ceeEEEEcCCCcEEEee
Q psy17586 43 TIIMYLIDPEGLFVDYY 59 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f 59 (106)
...+|+.||+|..+.++
T Consensus 103 ~~~~~~~DP~Gn~iei~ 119 (121)
T cd07251 103 GYSGYFADPDGHLWEVA 119 (121)
T ss_pred ceEEEEECCCCCEEEEe
Confidence 45689999999988765
No 179
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=25.64 E-value=79 Score=20.24 Aligned_cols=23 Identities=17% Similarity=0.530 Sum_probs=17.8
Q ss_pred eeEEEEcCCCcEEEeecCCCCHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPE 66 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~spe 66 (106)
..+|-+|++|+...+||.....+
T Consensus 21 l~l~~~~~~G~v~~L~Pn~~~~~ 43 (83)
T PF14326_consen 21 LYLFYIDADGKVTLLFPNRYQPD 43 (83)
T ss_pred EEEEEECCCCCEEEEecCccccC
Confidence 35777899999999998765544
No 180
>PF10084 DUF2322: Uncharacterized protein conserved in bacteria (DUF2322); InterPro: IPR016755 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.48 E-value=1.4e+02 Score=20.99 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.1
Q ss_pred EecceeEEEEcCCCcEEEeecCCCCHH
Q psy17586 40 VDHTIIMYLIDPEGLFVDYYGQNKKPE 66 (106)
Q Consensus 40 VDHSa~iYLmDPdGrfv~~f~~~~spe 66 (106)
|||-+.+=|+|.+|..+..++..-.-.
T Consensus 11 i~hl~~l~l~d~~g~~v~~I~n~pGk~ 37 (100)
T PF10084_consen 11 IDHLAGLDLLDADGNVVAHIENKPGKL 37 (100)
T ss_pred ccceeeeEeecCCCcEEEEecCCCCcc
Confidence 899999999999999999987655433
No 181
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=24.95 E-value=1.4e+02 Score=24.24 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=29.8
Q ss_pred eeEEEEcCCCcEEEeecCCC--CHHHHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNK--KPEEVSNSIIVNMMK 78 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~--speeiAe~Ir~~l~~ 78 (106)
..+.++|.+|+|+--+-.++ .+.+++..|..+|..
T Consensus 79 PaVvvvDe~G~~vIsLLsGH~GGAN~LA~~iA~~lga 115 (315)
T PRK05788 79 PAVVVVDEKGKFVISLLSGHHGGANELARDLAKILGA 115 (315)
T ss_pred CCEEEEeCCCCEEEEcccCCcccHHHHHHHHHHHhCC
Confidence 47899999999999887776 489999999988743
No 182
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=24.94 E-value=86 Score=19.22 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=15.0
Q ss_pred ceeEEEEcCCCcEEEeec
Q psy17586 43 TIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~ 60 (106)
...++++|++|++++.+.
T Consensus 24 ~~~~~v~d~~g~~~Giv~ 41 (106)
T cd04582 24 LRALTVVDADGQPLGFVT 41 (106)
T ss_pred CCEEEEECCCCCEEEEEe
Confidence 346889999999999886
No 183
>PF14284 PcfJ: PcfJ-like protein
Probab=24.86 E-value=73 Score=23.42 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=30.9
Q ss_pred eeecC--CccccceeeEEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 8 HFIGG--TLPLCRPLMYSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 8 ~~~~g--~~~~~~~~~y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
|-+|| =...+..-...|++-+........-|||.- +|+|+++..-+....+-+..+.+..++.+|.
T Consensus 95 HCV~s~~Y~~~~~~g~~~I~~~r~~~~~~~~~~TiEv-------~~~~~i~Q~rg~~N~~~~~~~~i~~~v~~w~ 162 (169)
T PF14284_consen 95 HCVGSNRYAERIAKGESLIFSLRKKEEPEEPYYTIEV-------RPDGRIVQARGKCNRQPKYPEEIKEFVNKWA 162 (169)
T ss_pred cCCCcHHHHHHHhcCCeEEEEEEecCCCceeeEEEEE-------CCCCeehhhhccccCCCCChHHHHHHHHHHH
Confidence 33444 233344333555554333222222356664 7788866555444433223444444555553
No 184
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.79 E-value=75 Score=20.00 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=10.7
Q ss_pred EEEEcCCCcEEEe
Q psy17586 46 MYLIDPEGLFVDY 58 (106)
Q Consensus 46 iYLmDPdGrfv~~ 58 (106)
+|+.||+|..+.+
T Consensus 112 ~~~~DPdG~~iE~ 124 (125)
T cd07241 112 SVILDPEGNRIEI 124 (125)
T ss_pred EEEECCCCCEEEe
Confidence 5788999998765
No 185
>PRK12359 flavodoxin FldB; Provisional
Probab=24.55 E-value=1.9e+02 Score=21.46 Aligned_cols=44 Identities=9% Similarity=-0.033 Sum_probs=28.7
Q ss_pred CCceeEecceeEEEEcCCCcEEEeecCCCCHHH-HHHHHHHHHHHHH
Q psy17586 35 IFWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEE-VSNSIIVNMMKYE 80 (106)
Q Consensus 35 ~~dY~VDHSa~iYLmDPdGrfv~~f~~~~spee-iAe~Ir~~l~~~~ 80 (106)
.++|..+||.++ .|-.++|+++--...+-.+ --++|.+.++.-+
T Consensus 121 ~~gY~f~~s~a~--~~~~~~f~gl~lD~~nq~~~t~~ri~~W~~~~~ 165 (172)
T PRK12359 121 TEGYEFTSSKPL--TADGQLFVGLALDEVNQYDLSDERIQQWCEQIL 165 (172)
T ss_pred CCCcccccceee--EcCCCEEEEEEEcCCCchhhhHHHHHHHHHHHH
Confidence 467999999886 4444569998755554433 4456666665433
No 186
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=24.40 E-value=65 Score=16.12 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=13.6
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
..+++++.+|++++++.
T Consensus 24 ~~~~v~~~~~~~~g~i~ 40 (49)
T smart00116 24 RRLPVVDEEGRLVGIVT 40 (49)
T ss_pred CcccEECCCCeEEEEEE
Confidence 35678898899988876
No 187
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=24.33 E-value=1.2e+02 Score=17.50 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=24.5
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSI 72 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~I 72 (106)
.|-|.....++++ ++|+.+..+....+++++...|
T Consensus 58 ~~~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 58 EYGVRSIPTFLFF-KNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred hcCcccccEEEEE-ECCEEEEEEecCCCHHHHHHHh
Confidence 5778887777777 5677777777666666666544
No 188
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=24.24 E-value=1.2e+02 Score=19.01 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=22.9
Q ss_pred ceeEEEEcCCCcEEEeecCCC--CHHHHHHHHHHHHHHH
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNK--KPEEVSNSIIVNMMKY 79 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~--speeiAe~Ir~~l~~~ 79 (106)
...+-++|++|++........ +.+++.+.|..++.++
T Consensus 12 ~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 50 (99)
T smart00732 12 GIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKKY 50 (99)
T ss_pred eEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHHHh
Confidence 345556777777665433222 3456788888888765
No 189
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=23.98 E-value=85 Score=20.78 Aligned_cols=17 Identities=24% Similarity=0.651 Sum_probs=13.9
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
-.+|+-||+|..+.++.
T Consensus 124 r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 124 RLCYIRGPEGILIELAE 140 (142)
T ss_pred EEEEEECCCCCEEEeee
Confidence 35789999999988764
No 190
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=23.80 E-value=1.7e+02 Score=21.09 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.0
Q ss_pred EcCCCcEEEeecCCCCHHHHHHHHHHH
Q psy17586 49 IDPEGLFVDYYGQNKKPEEVSNSIIVN 75 (106)
Q Consensus 49 mDPdGrfv~~f~~~~speeiAe~Ir~~ 75 (106)
++|+|.++...|...+.++|.+-|+..
T Consensus 7 v~~dg~i~V~aP~~~s~~~I~~fl~~~ 33 (205)
T PF01863_consen 7 VDPDGEIVVSAPPRVSKEEIERFLRSK 33 (205)
T ss_pred EcCCCEEEEEECCCCCHHHHHHHHHHH
Confidence 678999999999999998876655543
No 191
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.68 E-value=84 Score=20.43 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.4
Q ss_pred eeEEEEcCCCcEEEee
Q psy17586 44 IIMYLIDPEGLFVDYY 59 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f 59 (106)
..+|+.||||..+.+.
T Consensus 97 r~f~~~DPdGn~~~~~ 112 (113)
T cd08356 97 REFFLHDPSGVLWHIG 112 (113)
T ss_pred EEEEEECCCccEEEee
Confidence 5799999999988763
No 192
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=23.47 E-value=86 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=11.2
Q ss_pred eEEEEcCCCcEEEe
Q psy17586 45 IMYLIDPEGLFVDY 58 (106)
Q Consensus 45 ~iYLmDPdGrfv~~ 58 (106)
.++++|++|+++..
T Consensus 3 ~i~i~d~~g~i~~~ 16 (104)
T PF13426_consen 3 GIFILDPDGRILYV 16 (104)
T ss_dssp EEEEEETTSBEEEE
T ss_pred EEEEECCcCcEEeh
Confidence 57889999987765
No 193
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=23.46 E-value=76 Score=24.52 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=21.6
Q ss_pred EeecCCCCHHHHHHHHHHHHHHHHhh
Q psy17586 57 DYYGQNKKPEEVSNSIIVNMMKYENL 82 (106)
Q Consensus 57 ~~f~~~~speeiAe~Ir~~l~~~~~~ 82 (106)
.+|-...+|++++++|.++|+.|.+.
T Consensus 39 ~Yfw~~rtP~~~a~Dl~~~i~~y~~~ 64 (192)
T PF06057_consen 39 RYFWSERTPEQTAADLARIIRHYRAR 64 (192)
T ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999988644
No 194
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=23.41 E-value=77 Score=24.28 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=15.9
Q ss_pred cceeEEEEcCCCcEEEee
Q psy17586 42 HTIIMYLIDPEGLFVDYY 59 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f 59 (106)
+..++|+.||+|..+.++
T Consensus 246 ~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 246 RGQTIYFFDPSGNRNETF 263 (303)
T ss_pred CceEEEEECCCCCEEEEe
Confidence 456899999999999987
No 195
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=23.33 E-value=2.4e+02 Score=22.27 Aligned_cols=39 Identities=8% Similarity=0.035 Sum_probs=26.2
Q ss_pred eEEEEcCCCcEEEeecCCC-CHHHHHHHHHHHHHHHHhhh
Q psy17586 45 IMYLIDPEGLFVDYYGQNK-KPEEVSNSIIVNMMKYENLK 83 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~-speeiAe~Ir~~l~~~~~~~ 83 (106)
=++-.|.+|+++..=--.. ...+.++++.+++...++..
T Consensus 139 DiL~~D~~G~~VVIElKR~~a~~~aV~QL~rY~~~l~~~~ 178 (228)
T PF01939_consen 139 DILAKDKDGNLVVIELKRRRADRDAVEQLLRYVELLKRDP 178 (228)
T ss_dssp EEEEE-TTS-EEEEEE-SS-B-HHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHhhcc
Confidence 4788999999887754433 55678888888988776544
No 196
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=23.23 E-value=1.2e+02 Score=20.23 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=18.6
Q ss_pred CCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 52 EGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 52 dGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
+|+.+.. .+++++.+.|.+.|++
T Consensus 52 nG~~V~A----~t~eeL~~kI~~~i~e 74 (78)
T PF07293_consen 52 NGEIVAA----ETAEELLEKIKEKIEE 74 (78)
T ss_pred CCEEEec----CCHHHHHHHHHHHHhc
Confidence 3887765 7899999999998864
No 197
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=22.66 E-value=1.4e+02 Score=22.78 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=15.9
Q ss_pred eeEEEEcCCCcEEEeecCCC
Q psy17586 44 IIMYLIDPEGLFVDYYGQNK 63 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~ 63 (106)
+.+|+++.+|++.++.-...
T Consensus 36 aNvyIis~kGkiLGy~~~~~ 55 (177)
T PF06018_consen 36 ANVYIISRKGKILGYSFIDD 55 (177)
T ss_dssp SEEEEEETTSBEEEEE-SS-
T ss_pred CcEEEEeCCccEEEEeccCC
Confidence 68999999999999876544
No 198
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=22.61 E-value=1.7e+02 Score=24.11 Aligned_cols=42 Identities=17% Similarity=0.345 Sum_probs=30.8
Q ss_pred eeEecceeEEEEcCCCc-EEEee------cCCCCHHHHHHHHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEGL-FVDYY------GQNKKPEEVSNSIIVNMMKY 79 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdGr-fv~~f------~~~~speeiAe~Ir~~l~~~ 79 (106)
+.+.|.-..||.|.||+ +++++ ..+.+..++++.+++.+++.
T Consensus 24 ~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~ 72 (421)
T PRK06777 24 FYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQF 72 (421)
T ss_pred eeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhc
Confidence 67889999999999994 45543 33566777888888877653
No 199
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=22.59 E-value=1.4e+02 Score=20.78 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=16.2
Q ss_pred CCCcEEEeecCCCCHHHHHHHHHHHHHHHHhhhc
Q psy17586 51 PEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKK 84 (106)
Q Consensus 51 PdGrfv~~f~~~~speeiAe~Ir~~l~~~~~~~~ 84 (106)
|+|.|+..+ ++.+++.-...-...+++|.+...
T Consensus 53 ~dgEFrDI~-HPI~~~~R~kIq~aVl~~Y~~~~~ 85 (95)
T COG2088 53 PDGEFRDIA-HPINSDTREKIQDAVLKEYERLDE 85 (95)
T ss_pred CCcchhhcc-CcCCHHHHHHHHHHHHHHHHHhch
Confidence 556666553 333333322222344577776655
No 200
>PRK13669 hypothetical protein; Provisional
Probab=22.29 E-value=1.3e+02 Score=20.16 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=18.3
Q ss_pred CCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 52 EGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 52 dGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
+|+.+.. .++|++++.|.+.|++
T Consensus 52 ng~~V~a----~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 52 NGEVVEG----ETPEELVENIYAHLEE 74 (78)
T ss_pred CCeEeec----CCHHHHHHHHHHHHhh
Confidence 5676654 7899999999998865
No 201
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=21.92 E-value=87 Score=23.73 Aligned_cols=20 Identities=30% Similarity=0.733 Sum_probs=16.2
Q ss_pred cceeEEEEcCCCcEEEeecC
Q psy17586 42 HTIIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~~ 61 (106)
+..++|+.||+|-.+.++..
T Consensus 237 ~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 237 NAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred cceEEEEECCCCCEEEEEec
Confidence 34569999999999998753
No 202
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=21.82 E-value=1.9e+02 Score=20.07 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=29.3
Q ss_pred ceeEEEEcCCCcEEEeecCC--CCHHHHHHHHHHHHHHHHh
Q psy17586 43 TIIMYLIDPEGLFVDYYGQN--KKPEEVSNSIIVNMMKYEN 81 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~--~speeiAe~Ir~~l~~~~~ 81 (106)
+..+-|+|-+|+.+..-... .+++++.+.|..++++..+
T Consensus 8 ~i~~~l~d~~g~ii~~~~~~~~~~~~~~~~~l~~~i~~~~~ 48 (179)
T PF00480_consen 8 SIRIALVDLDGEIIYSESIPTPTSPEELLDALAELIERLLA 48 (179)
T ss_dssp EEEEEEEETTSCEEEEEEEEHHSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 45677899999887665444 5688888888888877753
No 203
>PRK07482 hypothetical protein; Provisional
Probab=21.75 E-value=1.9e+02 Score=24.29 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=30.7
Q ss_pred eeEecceeEEEEcCCC-cEEEeec------CCCCHHHHHHHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEG-LFVDYYG------QNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdG-rfv~~f~------~~~speeiAe~Ir~~l~~ 78 (106)
-.|++.-..||.|.|| +++++.. .+....+|++.|++.+++
T Consensus 34 ~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~ 81 (461)
T PRK07482 34 RIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKE 81 (461)
T ss_pred eeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHh
Confidence 5689999999999999 4555543 256677888888877754
No 204
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=21.73 E-value=1.1e+02 Score=19.20 Aligned_cols=18 Identities=17% Similarity=-0.239 Sum_probs=14.2
Q ss_pred ceeEEEEcCCCcEEEeec
Q psy17586 43 TIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~ 60 (106)
.-.+|+.||+|..+.+..
T Consensus 104 ~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 104 DRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred ceEEEEECCCCCEEEEec
Confidence 357899999999887653
No 205
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=21.65 E-value=1.8e+02 Score=23.56 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=30.5
Q ss_pred eeEecceeEEEEcCCC-cEEEeec------CCCCHHHHHHHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEG-LFVDYYG------QNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdG-rfv~~f~------~~~speeiAe~Ir~~l~~ 78 (106)
..+.+.-..||.|.|| ++++++. -+.+..++++.+++.+.+
T Consensus 23 ~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~ 70 (406)
T PRK12381 23 FIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASK 70 (406)
T ss_pred ceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhh
Confidence 4678888999999999 5666543 455667888888877754
No 206
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=21.55 E-value=37 Score=23.69 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=22.6
Q ss_pred CCcEEEeecCCCCHHHHHHHHHHHHHHH
Q psy17586 52 EGLFVDYYGQNKKPEEVSNSIIVNMMKY 79 (106)
Q Consensus 52 dGrfv~~f~~~~speeiAe~Ir~~l~~~ 79 (106)
+|-|...|+....|-+|+..|++.|++.
T Consensus 13 ~g~Far~F~~~vqPvEIa~~L~remd~~ 40 (116)
T PF12401_consen 13 EGAFARVFRSEVQPVEIAKALRREMDDQ 40 (116)
T ss_dssp STHHHHHHTTSS-THHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHhC
Confidence 4556677888899999999999999776
No 207
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=21.30 E-value=2.1e+02 Score=23.72 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=30.6
Q ss_pred eeEecceeEEEEcCCC-cEEEee------cCCCCHHHHHHHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEG-LFVDYY------GQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdG-rfv~~f------~~~~speeiAe~Ir~~l~~ 78 (106)
..+.+.-..||.|.|| ++++++ ..+....++.+.|++.+++
T Consensus 40 ~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~ 87 (443)
T PRK06058 40 VYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVAR 87 (443)
T ss_pred ceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHh
Confidence 5689999999999999 455553 2456677888888877754
No 208
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=21.27 E-value=1.5e+02 Score=18.53 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.7
Q ss_pred eEEEEcCCCcEEEeecCCCCHHHHHH
Q psy17586 45 IMYLIDPEGLFVDYYGQNKKPEEVSN 70 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~speeiAe 70 (106)
.+.+++++|++++.=....+.++|..
T Consensus 36 ~V~i~~~~g~~ia~G~a~~ss~ei~~ 61 (74)
T PF01472_consen 36 EVAIVDEDGEVIAVGRANMSSEEIKK 61 (74)
T ss_dssp EEEEEETTSSEEEEEEESSTHHHHHH
T ss_pred EEEEEcCCCeEEEEEEEecCHHHHHH
Confidence 46799999999999999999988765
No 209
>PRK07483 hypothetical protein; Provisional
Probab=21.21 E-value=2.3e+02 Score=23.68 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=31.0
Q ss_pred eeEecceeEEEEcCCC-cEEEeec------CCCCHHHHHHHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEG-LFVDYYG------QNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdG-rfv~~f~------~~~speeiAe~Ir~~l~~ 78 (106)
..+.+.-..||.|.|| ++++++. .+.+..+|++.+++.+++
T Consensus 14 ~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~ 61 (443)
T PRK07483 14 PVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDR 61 (443)
T ss_pred ceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHh
Confidence 5688999999999999 5556543 556777888888877754
No 210
>PF00932 LTD: Lamin Tail Domain; InterPro: IPR001322 Intermediate filaments (IF) are primordial components of the cytoskeleton and the nuclear envelope []. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups, type I: acidic cytokeratins, type II: basic cytokeratins, type III: vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin, type IV: neurofilaments L, H and M, alpha-internexin and nestin, and type V: nuclear lamins A, B1, B2 and C. The lamins are components of the nuclear lamina, a fibrous layer on the nucleoplasmic side of the inner nuclear membrane that may provide a framework for the nuclear envelope and may interact with chromatin. All IF proteins are structurally similar in that they consist of a central rod domain arranged in coiled-coil alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. The C-terminal domain has been charcterised for the lamins.; PDB: 3UMN_A 2KPW_A 3JT0_A 2LLL_A 1UFG_A 3GEF_D 1IFR_A 1IVT_A.
Probab=20.95 E-value=82 Score=20.76 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=15.7
Q ss_pred ceeEEEEcCCCcEEEeecCCC
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNK 63 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~ 63 (106)
.-.++|+|++|+.+..+.+..
T Consensus 93 gd~i~L~d~~G~~vd~~~y~~ 113 (116)
T PF00932_consen 93 GDTITLYDPSGEVVDSVSYGD 113 (116)
T ss_dssp EEEEEEE-TTS-EEEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEEeCC
Confidence 568999999999999887643
No 211
>PLN02300 lactoylglutathione lyase
Probab=20.85 E-value=86 Score=24.19 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=18.8
Q ss_pred eeEEEEcCCCcEEEeecCCCCHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPE 66 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~spe 66 (106)
..+|+.||+|..+.++.....+.
T Consensus 131 ~~~~~~DPdG~~iEl~~~~~~~~ 153 (286)
T PLN02300 131 VIAFVKDPDGYKFELIQRGPTPE 153 (286)
T ss_pred EEEEEECCCCCEEEEEeCCCCCC
Confidence 35799999999999998766555
No 212
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=20.61 E-value=90 Score=19.44 Aligned_cols=17 Identities=24% Similarity=0.720 Sum_probs=12.0
Q ss_pred cceeEEEEcCCCcEEEe
Q psy17586 42 HTIIMYLIDPEGLFVDY 58 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~ 58 (106)
+...+|+-||+|-.+.+
T Consensus 112 ~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 112 SGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp CEEEEEEEETTSEEEEE
T ss_pred CEEEEEEECCCCCEEEC
Confidence 33444899999987653
No 213
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=20.30 E-value=2.1e+02 Score=23.79 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=30.5
Q ss_pred eeEecceeEEEEcCCCc-EEEeec------CCCCHHHHHHHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEGL-FVDYYG------QNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdGr-fv~~f~------~~~speeiAe~Ir~~l~~ 78 (106)
+.+.+.-..||.|.||+ +++++. .+.+..+|++.+++.+.+
T Consensus 28 ~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~ 75 (429)
T PRK06173 28 YPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAK 75 (429)
T ss_pred ceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHh
Confidence 46899999999999995 555542 356667888877777654
No 214
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=20.23 E-value=1.2e+02 Score=24.28 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=22.0
Q ss_pred CCceeEe--cceeEEEEc-CCCcEEEeecCC
Q psy17586 35 IFWFQVD--HTIIMYLID-PEGLFVDYYGQN 62 (106)
Q Consensus 35 ~~dY~VD--HSa~iYLmD-PdGrfv~~f~~~ 62 (106)
.++|+|+ |...||+|| .+|+.+=.+.-.
T Consensus 154 ~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 154 DGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred CccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 5689875 999999999 778877776433
No 215
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=20.17 E-value=1e+02 Score=21.92 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=19.9
Q ss_pred EEEeecCCCCHHHHHHHHHHHHH
Q psy17586 55 FVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 55 fv~~f~~~~speeiAe~Ir~~l~ 77 (106)
|-..|+++.+.++++..|++.++
T Consensus 113 ~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 113 FDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred CCEEECcCCCHHHHHHHHHHHhc
Confidence 67889999999999999888764
No 216
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=20.13 E-value=2e+02 Score=20.59 Aligned_cols=42 Identities=5% Similarity=-0.137 Sum_probs=27.1
Q ss_pred EEEEcCCCcEEEeecCC-CCHHHHHHHHHHHHHHHHhhhcCCc
Q psy17586 46 MYLIDPEGLFVDYYGQN-KKPEEVSNSIIVNMMKYENLKKKSW 87 (106)
Q Consensus 46 iYLmDPdGrfv~~f~~~-~speeiAe~Ir~~l~~~~~~~~~~~ 87 (106)
+.+||.+..|..-=... ...+++++.+.++++.+++++++-.
T Consensus 2 LlvID~Q~~f~~~~~~~~~~~~~~~~ni~~l~~~ar~~~~~Vi 44 (179)
T cd01015 2 LLVIDLVEGYTQPGSYLAPGIAAALENVQRLLAAARAAGVPVI 44 (179)
T ss_pred EEEEEeecceeCCCCccccchHHHHHHHHHHHHHHHHcCCCEE
Confidence 45677777665311111 2457888999999999888776533
No 217
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=20.12 E-value=2e+02 Score=20.58 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=25.3
Q ss_pred EEEcCCCcEE-----EeecCCCCHHHHHHHHHHHHHHHHh
Q psy17586 47 YLIDPEGLFV-----DYYGQNKKPEEVSNSIIVNMMKYEN 81 (106)
Q Consensus 47 YLmDPdGrfv-----~~f~~~~speeiAe~Ir~~l~~~~~ 81 (106)
|.+++||..- ...-.+.+++++.+.|+..+.++-+
T Consensus 23 ~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~~~~ 62 (165)
T TIGR03027 23 VPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLAKYVR 62 (165)
T ss_pred eEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHHHhcc
Confidence 5667777543 2335678999999999999976543
No 218
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=20.05 E-value=1.9e+02 Score=16.41 Aligned_cols=27 Identities=15% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEcCCCcEEEeecCCCCHHHHHHHHH
Q psy17586 46 MYLIDPEGLFVDYYGQNKKPEEVSNSII 73 (106)
Q Consensus 46 iYLmDPdGrfv~~f~~~~speeiAe~Ir 73 (106)
+|++=|+|+.+. ++.+.+..++++.+.
T Consensus 1 ~~~~~~~g~~~~-~~~~~t~~~~~~~~~ 27 (60)
T cd01668 1 IYVFTPKGEIIE-LPAGATVLDFAYAIH 27 (60)
T ss_pred CEEECCCCCEEE-cCCCCCHHHHHHHHC
Confidence 578888898655 688888888777554
No 219
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=20.04 E-value=1e+02 Score=19.03 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=26.3
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSN 70 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe 70 (106)
.|.|.....++++++.|+....+.-..+.+++.+
T Consensus 70 ~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 70 KYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVK 103 (105)
T ss_pred hCCCCCcCEEEEEeCCCCCccccCCccCHHHHHh
Confidence 5889999999999988876767766667766654
No 220
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=20.01 E-value=2.3e+02 Score=23.30 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=30.6
Q ss_pred eeEecceeEEEEcCCCc-EEEee------cCCCCHHHHHHHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEGL-FVDYY------GQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdGr-fv~~f------~~~~speeiAe~Ir~~l~~ 78 (106)
+.|.+.-..||.|.||+ +++++ ..+.+..++++.|++.+.+
T Consensus 24 ~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~ 71 (421)
T PRK09792 24 FFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQ 71 (421)
T ss_pred eeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHh
Confidence 56788888899999995 55553 3367778888888887764
Done!