RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17586
(106 letters)
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding
protein; 1.80A {Saccharomyces cerevisiae} SCOP:
c.47.1.10 PDB: 2b7j_A
Length = 200
Score = 55.1 bits (133), Expect = 7e-11
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 39 QVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY-----ENLKKKSWF 88
VDH+I YL+DPEG FVD G+N + + I+ ++ Y +K++W+
Sbjct: 141 LVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVPAEQRAKQKEAWY 195
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin
fold, metal transport, structural genomics,
spine2-complexes; NMR {Homo sapiens}
Length = 171
Score = 51.5 bits (124), Expect = 1e-09
Identities = 18/44 (40%), Positives = 34/44 (77%)
Query: 39 QVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENL 82
VDH+I +YL++P+GLF DYYG+++ E++S+S+ +M + ++
Sbjct: 126 IVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFRSV 169
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding
protein, mitochondrial assembly factor, redox, nickel,
disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP:
c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A
2hrf_A 2hrn_A 1wp0_A
Length = 164
Score = 50.0 bits (120), Expect = 3e-09
Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 39 QVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY 79
VDHTIIMYLI P+G F+DY+GQNK+ E++ SI +M Y
Sbjct: 123 IVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY 163
>3me7_A Putative uncharacterized protein; electron transfer protein,
electron transport, structural GE PSI-2, protein
structure initiative; 1.50A {Aquifex aeolicus} PDB:
3me8_A
Length = 170
Score = 42.8 bits (101), Expect = 2e-06
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 39 QVDHTIIMYLIDPEGLFVDYY-GQNKKPEEVSNSI 72
H ++ ++ PE DY G N E N++
Sbjct: 123 DFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNAL 157
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural
genomics, montreal-kingsto bacterial structural genomics
initiative, BSGI; 1.70A {Bacillus subtilis} SCOP:
c.47.1.10 PDB: 1on4_A
Length = 174
Score = 39.7 bits (93), Expect = 3e-05
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 39 QVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLK 83
QV H YL+ P+G + Y + + II ++ LK
Sbjct: 132 QVIHQSSFYLVGPDGKVLKDYNGVENTP--YDDIISDVKSASTLK 174
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 35.4 bits (82), Expect = 0.001
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 40 VDHTIIMYLIDPEGLFVDYYGQNKK--PEEVSNSI 72
VDHT +++ G V Y +K + V +
Sbjct: 135 VDHTATTFVVKE-GRLVLLYSPDKAEATDRVVADL 168
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX,
phospholipid hydroperoxidase, struc genomics, structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 181
Score = 26.1 bits (58), Expect = 2.1
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 47 YLIDPEGLFVDYYGQNKKPEEVSNSI 72
YL+ P+G V + EEV I
Sbjct: 151 YLVAPDGKVVGAWDPTVSVEEVRPQI 176
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane,
oxidoreductase, transmembrane; 1.80A {Homo sapiens} PDB:
3cyn_A
Length = 180
Score = 25.7 bits (57), Expect = 2.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 47 YLIDPEGLFVDYYGQNKKPEEVSNSI 72
YL++PEG V ++ + E + I
Sbjct: 140 YLVNPEGQVVKFWRPEEPIEVIRPDI 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 2.7
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 23/88 (26%)
Query: 27 TIPYLLSFIFWFQVDHTIIMYLIDPEG-------LFVDY-YGQNK---------KPEEVS 69
PYL + + H + I+ +F+D+ + + K +
Sbjct: 465 IPPYLDQYFYSHIGHH---LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 70 NSIIVNMMKYEN--LKKKSWFEDTIESL 95
N++ + Y+ +E + ++
Sbjct: 522 NTLQ-QLKFYKPYICDNDPKYERLVNAI 548
Score = 25.2 bits (54), Expect = 5.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 28 IPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYENLKKK 85
IP +L + WF V + +M +++ Y K+P+E + SI Y LK K
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVN---KLHKYSLVEKQPKESTISI---PSIYLELKVK 438
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase;
GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Length = 185
Score = 24.5 bits (54), Expect = 7.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 47 YLIDPEGLFVDYYGQNKKPEEVSNSI 72
+LID G V YG ++P + +
Sbjct: 156 FLIDKNGCVVKRYGPMEEPLVIEKDL 181
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase,
peroxidase, redox-ACT center; 2.02A {Saccharomyces
cerevisiae}
Length = 171
Score = 24.1 bits (53), Expect = 9.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 47 YLIDPEGLFVDYYGQNKKPEEVSNSI 72
+L+D +G + Y KP +S +I
Sbjct: 138 FLVDKKGKVYERYSSLTKPSSLSETI 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,635,964
Number of extensions: 84165
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 22
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)