RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17586
         (106 letters)



>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ),
           soluble domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 160

 Score = 40.1 bits (92), Expect = 8e-06
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 37  WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY 79
            + VDHTIIMYLI P+G F+DY+GQNK+  E++ SI  +M  Y
Sbjct: 118 DYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY 160


>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ),
           soluble domain {Baker's yeast(Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 169

 Score = 35.2 bits (79), Expect = 6e-04
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 37  WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY 79
            + VDH+I  YL+DPEG FVD  G+N   +   + I+ ++  Y
Sbjct: 124 DYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 166


>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ),
           soluble domain {Bacillus subtilis [TaxId: 1423]}
          Length = 172

 Score = 30.7 bits (68), Expect = 0.018
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 39  QVDHTIIMYLIDPEGLFVDYYGQNKKPE 66
           QV H    YL+ P+G  +  Y   +   
Sbjct: 130 QVIHQSSFYLVGPDGKVLKDYNGVENTP 157


>d1lm8v_ b.3.3.1 (V:) VHL {Human (Homo sapiens) [TaxId: 9606]}
          Length = 150

 Score = 26.7 bits (59), Expect = 0.49
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 18 RPLMYSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDY 58
          RP++ S+ S  P  +  IF  +    ++   ++ +G    Y
Sbjct: 1  RPVLRSVNSREPSQV--IFCNRSPRVVLPVWLNFDGEPQPY 39


>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 184

 Score = 26.4 bits (57), Expect = 0.56
 Identities = 5/27 (18%), Positives = 14/27 (51%)

Query: 46  MYLIDPEGLFVDYYGQNKKPEEVSNSI 72
            +L+ P+G+ +  Y +  +  ++   I
Sbjct: 153 KFLVGPDGVPLRRYSRRFQTIDIEPDI 179


>d2ogqa2 d.223.1.2 (A:507-593) Serine/threonine-protein kinase plk
          C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 23.6 bits (51), Expect = 4.3
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 21/89 (23%)

Query: 28 IPYLLSFIFWFQVDHTIIMYL-----------------IDPEGLFVDYYGQNKKPEEVSN 70
          +PYL +   WF+    II++L                 + P    V Y  + +       
Sbjct: 2  LPYLRT---WFRTRSAIILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRL 58

Query: 71 SIIVNMMKYENLKKK-SWFEDTIESLTSS 98
          S++      + L  +  +    ++ L SS
Sbjct: 59 SLLEEYGCCKELASRLRYARTMVDKLLSS 87


>d1nxha_ a.200.1.1 (A:) Hypothetical protein MTH393 {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 124

 Score = 22.9 bits (49), Expect = 8.3
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 73 IVNMMKYENLKKKSWFEDTI 92
          ++ +MK   L+   W ED +
Sbjct: 4  LMRLMKRRILESYRWQEDVV 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 418,010
Number of extensions: 17549
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 10
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)