Query psy17587
Match_columns 231
No_of_seqs 217 out of 2068
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:27:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0345|consensus 100.0 2.3E-35 4.9E-40 257.2 13.0 192 2-229 238-431 (567)
2 KOG0331|consensus 100.0 2.8E-33 6E-38 251.0 14.9 151 6-158 325-477 (519)
3 KOG0328|consensus 100.0 6E-32 1.3E-36 223.3 12.4 148 3-153 250-397 (400)
4 KOG0342|consensus 100.0 3.2E-31 6.9E-36 232.3 12.6 130 7-138 317-446 (543)
5 KOG0333|consensus 100.0 6.7E-31 1.4E-35 231.8 12.8 146 4-152 502-648 (673)
6 KOG0330|consensus 100.0 1.4E-30 3.1E-35 222.8 13.0 142 3-147 284-425 (476)
7 PTZ00110 helicase; Provisional 100.0 8.3E-30 1.8E-34 235.6 17.7 153 6-160 362-515 (545)
8 KOG0341|consensus 100.0 5.3E-30 1.1E-34 219.6 12.3 176 3-182 406-589 (610)
9 COG0513 SrmB Superfamily II DN 100.0 1.2E-29 2.6E-34 232.8 13.5 137 5-144 259-396 (513)
10 KOG0336|consensus 100.0 9.1E-30 2E-34 219.4 11.2 153 6-160 451-603 (629)
11 KOG0348|consensus 100.0 1.7E-28 3.7E-33 217.1 16.4 205 7-228 409-640 (708)
12 PLN00206 DEAD-box ATP-dependen 100.0 2E-28 4.3E-33 225.4 15.5 149 6-156 352-502 (518)
13 KOG0340|consensus 100.0 1.2E-28 2.7E-33 208.9 12.4 140 8-149 240-381 (442)
14 KOG0335|consensus 100.0 1.6E-28 3.5E-33 217.5 13.6 152 5-158 314-473 (482)
15 KOG0326|consensus 100.0 7.7E-29 1.7E-33 207.9 8.3 148 3-153 306-453 (459)
16 PRK04837 ATP-dependent RNA hel 100.0 4.6E-28 1E-32 218.0 12.9 138 5-145 241-378 (423)
17 KOG0343|consensus 100.0 1.1E-27 2.3E-32 212.8 14.9 192 3-229 297-490 (758)
18 PRK10590 ATP-dependent RNA hel 99.9 7.2E-27 1.6E-31 212.1 14.3 126 17-144 242-367 (456)
19 PRK11776 ATP-dependent RNA hel 99.9 8.1E-27 1.8E-31 212.0 14.2 135 6-143 229-363 (460)
20 TIGR00614 recQ_fam ATP-depende 99.9 1.5E-26 3.3E-31 210.7 14.6 132 6-139 212-343 (470)
21 KOG0332|consensus 99.9 1.8E-26 3.8E-31 197.0 13.2 139 3-144 314-459 (477)
22 PRK11192 ATP-dependent RNA hel 99.9 2.8E-26 6E-31 207.0 15.3 135 6-143 232-366 (434)
23 PRK04537 ATP-dependent RNA hel 99.9 1.7E-26 3.7E-31 214.5 14.2 137 5-144 243-379 (572)
24 PRK11634 ATP-dependent RNA hel 99.9 3.7E-26 8E-31 213.8 14.7 138 5-145 231-368 (629)
25 KOG0334|consensus 99.9 4.7E-26 1E-30 214.5 14.2 174 4-179 597-777 (997)
26 PRK01297 ATP-dependent RNA hel 99.9 9.3E-26 2E-30 205.9 15.4 137 6-145 322-458 (475)
27 PLN03137 ATP-dependent DNA hel 99.9 4.7E-26 1E-30 219.0 13.9 129 8-138 668-796 (1195)
28 PTZ00424 helicase 45; Provisio 99.9 7.2E-26 1.6E-30 202.1 12.6 142 6-150 254-395 (401)
29 KOG0338|consensus 99.9 1.1E-25 2.3E-30 198.5 10.7 131 8-141 415-545 (691)
30 PRK11057 ATP-dependent DNA hel 99.9 3.7E-25 8.1E-30 207.1 14.8 128 7-137 224-351 (607)
31 KOG0344|consensus 99.9 3.8E-25 8.3E-30 197.9 13.9 152 3-157 371-523 (593)
32 KOG0347|consensus 99.9 6.3E-25 1.4E-29 195.1 12.6 133 9-145 454-586 (731)
33 KOG0339|consensus 99.9 5.8E-25 1.3E-29 193.8 12.1 158 4-163 452-609 (731)
34 TIGR01389 recQ ATP-dependent D 99.9 2.2E-24 4.8E-29 201.6 14.3 128 6-136 211-338 (591)
35 COG0514 RecQ Superfamily II DN 99.9 7.8E-24 1.7E-28 193.3 14.6 122 17-140 227-348 (590)
36 TIGR03817 DECH_helic helicase/ 99.9 6.5E-24 1.4E-28 202.1 12.7 123 20-144 271-403 (742)
37 KOG0327|consensus 99.9 6.6E-24 1.4E-28 181.9 10.0 144 5-153 251-394 (397)
38 PRK04914 ATP-dependent helicas 99.9 1.3E-22 2.8E-27 195.6 14.3 137 4-143 478-617 (956)
39 KOG0350|consensus 99.9 8.6E-23 1.9E-27 179.9 10.6 137 3-142 413-553 (620)
40 PRK10917 ATP-dependent DNA hel 99.9 2.6E-20 5.6E-25 176.5 18.9 126 18-143 469-603 (681)
41 COG1111 MPH1 ERCC4-like helica 99.9 3.8E-21 8.2E-26 170.2 12.3 122 6-130 349-482 (542)
42 PF00271 Helicase_C: Helicase 99.9 2.6E-21 5.7E-26 133.9 8.6 78 40-117 1-78 (78)
43 cd00079 HELICc Helicase superf 99.9 5.7E-21 1.2E-25 143.7 11.0 119 5-125 12-131 (131)
44 KOG0346|consensus 99.8 2.5E-21 5.5E-26 168.5 9.2 137 4-142 252-423 (569)
45 PRK12898 secA preprotein trans 99.8 5.9E-21 1.3E-25 177.3 11.1 123 5-131 457-588 (656)
46 TIGR00580 mfd transcription-re 99.8 1.8E-20 3.9E-25 181.1 14.6 111 17-129 657-770 (926)
47 PRK09200 preprotein translocas 99.8 6.4E-21 1.4E-25 180.3 11.2 124 4-131 411-543 (790)
48 TIGR00643 recG ATP-dependent D 99.8 4.1E-20 8.9E-25 173.9 16.6 135 9-143 436-580 (630)
49 PRK05298 excinuclease ABC subu 99.8 3.4E-20 7.4E-25 174.6 15.3 146 6-154 431-591 (652)
50 PRK13767 ATP-dependent helicas 99.8 1.9E-20 4.2E-25 181.4 13.1 107 20-128 284-397 (876)
51 TIGR00631 uvrb excinuclease AB 99.8 4.2E-20 9.2E-25 173.4 14.4 128 5-135 426-559 (655)
52 KOG4284|consensus 99.8 1.5E-20 3.2E-25 170.1 9.1 123 6-131 259-381 (980)
53 PRK02362 ski2-like helicase; P 99.8 2E-19 4.4E-24 172.0 17.0 110 19-130 242-398 (737)
54 PHA02653 RNA helicase NPH-II; 99.8 2E-19 4.4E-24 168.7 16.5 107 20-131 395-516 (675)
55 KOG0351|consensus 99.8 3.8E-20 8.2E-25 177.6 11.6 128 7-136 472-599 (941)
56 PRK10689 transcription-repair 99.8 1.1E-19 2.5E-24 178.9 14.7 112 16-129 805-919 (1147)
57 TIGR01587 cas3_core CRISPR-ass 99.8 1.4E-19 3E-24 159.4 12.5 118 7-129 209-336 (358)
58 PRK13766 Hef nuclease; Provisi 99.8 1.5E-19 3.4E-24 173.8 13.4 122 5-129 347-479 (773)
59 KOG0349|consensus 99.8 9.2E-20 2E-24 158.8 8.9 115 14-131 500-617 (725)
60 TIGR03714 secA2 accessory Sec 99.8 1.5E-19 3.2E-24 170.0 10.9 123 4-131 407-539 (762)
61 PRK09751 putative ATP-dependen 99.8 2.6E-19 5.6E-24 178.2 13.1 107 19-127 243-383 (1490)
62 KOG0337|consensus 99.8 5.3E-20 1.2E-24 159.5 6.2 139 4-144 245-383 (529)
63 TIGR01970 DEAH_box_HrpB ATP-de 99.8 2.1E-19 4.4E-24 172.1 10.8 110 20-132 209-339 (819)
64 PRK00254 ski2-like helicase; P 99.8 2.1E-18 4.5E-23 164.7 12.7 110 19-130 237-389 (720)
65 PRK11664 ATP-dependent RNA hel 99.8 8.1E-19 1.8E-23 168.2 9.8 109 20-131 212-341 (812)
66 TIGR00963 secA preprotein tran 99.8 2E-18 4.3E-23 161.6 11.5 122 6-131 390-519 (745)
67 smart00490 HELICc helicase sup 99.8 3.8E-18 8.2E-23 117.9 8.9 81 37-117 2-82 (82)
68 TIGR00603 rad25 DNA repair hel 99.8 7.2E-18 1.6E-22 158.4 13.5 134 5-145 480-625 (732)
69 PRK12906 secA preprotein trans 99.7 4.1E-18 9E-23 160.7 10.4 123 5-131 424-555 (796)
70 TIGR02621 cas3_GSU0051 CRISPR- 99.7 1.2E-17 2.5E-22 158.7 11.3 103 19-128 271-390 (844)
71 PRK01172 ski2-like helicase; P 99.7 3.7E-17 7.9E-22 155.2 14.3 110 18-130 234-379 (674)
72 KOG0352|consensus 99.7 1.3E-17 2.8E-22 145.2 9.6 110 21-132 256-365 (641)
73 PHA02558 uvsW UvsW helicase; P 99.7 2.5E-17 5.4E-22 151.3 11.8 99 19-119 343-442 (501)
74 KOG0354|consensus 99.7 3.9E-17 8.6E-22 151.7 12.8 121 6-130 396-530 (746)
75 PRK12900 secA preprotein trans 99.7 1.9E-17 4.2E-22 157.6 9.1 124 4-131 581-713 (1025)
76 PRK11131 ATP-dependent RNA hel 99.7 4.7E-17 1E-21 160.0 10.7 108 19-131 285-413 (1294)
77 COG1200 RecG RecG-like helicas 99.7 3.4E-15 7.4E-20 137.2 17.2 170 9-180 461-642 (677)
78 COG1201 Lhr Lhr-like helicases 99.7 1.1E-15 2.4E-20 144.7 13.2 117 7-128 243-361 (814)
79 TIGR01967 DEAH_box_HrpA ATP-de 99.7 5E-16 1.1E-20 153.1 10.7 108 19-131 278-406 (1283)
80 COG1202 Superfamily II helicas 99.6 6.7E-16 1.5E-20 138.8 10.3 109 20-130 440-554 (830)
81 TIGR03158 cas3_cyano CRISPR-as 99.6 1.7E-15 3.8E-20 133.6 9.4 85 19-114 271-357 (357)
82 KOG0353|consensus 99.6 2E-15 4.3E-20 130.2 7.1 120 9-130 306-468 (695)
83 PLN03142 Probable chromatin-re 99.6 9.8E-15 2.1E-19 142.0 12.7 122 6-129 472-599 (1033)
84 PRK14701 reverse gyrase; Provi 99.6 4.3E-15 9.4E-20 150.3 6.8 121 8-135 320-462 (1638)
85 PRK09694 helicase Cas3; Provis 99.6 1.1E-13 2.3E-18 133.5 15.8 98 16-118 556-664 (878)
86 COG1204 Superfamily II helicas 99.5 7.3E-14 1.6E-18 133.1 13.9 114 14-129 247-408 (766)
87 PRK09401 reverse gyrase; Revie 99.5 8.9E-15 1.9E-19 144.9 7.6 103 6-115 316-430 (1176)
88 KOG0329|consensus 99.5 8.6E-15 1.9E-19 120.4 3.0 76 76-151 302-378 (387)
89 COG1061 SSL2 DNA or RNA helica 99.5 5.7E-13 1.2E-17 120.7 11.7 107 7-116 270-376 (442)
90 COG1197 Mfd Transcription-repa 99.4 1.8E-12 3.9E-17 125.3 13.2 118 10-129 792-913 (1139)
91 COG0556 UvrB Helicase subunit 99.4 8.8E-12 1.9E-16 111.8 16.5 121 5-128 430-556 (663)
92 PRK12904 preprotein translocas 99.4 1.3E-12 2.9E-17 124.2 11.3 123 5-131 414-575 (830)
93 TIGR01054 rgy reverse gyrase. 99.4 1.1E-12 2.4E-17 130.2 8.8 89 8-102 316-410 (1171)
94 PRK13104 secA preprotein trans 99.4 3.4E-12 7.5E-17 121.8 10.7 122 6-131 429-589 (896)
95 PRK05580 primosome assembly pr 99.4 4.4E-12 9.4E-17 120.4 10.9 99 34-132 438-552 (679)
96 PRK13107 preprotein translocas 99.3 5.4E-12 1.2E-16 120.3 9.9 123 5-131 433-593 (908)
97 KOG0950|consensus 99.3 7.9E-12 1.7E-16 118.2 10.4 116 20-137 460-619 (1008)
98 TIGR00595 priA primosomal prot 99.3 9.1E-12 2E-16 114.5 10.5 97 35-131 271-383 (505)
99 COG4098 comFA Superfamily II D 99.3 2.1E-11 4.6E-16 104.3 10.5 114 9-126 293-413 (441)
100 KOG0384|consensus 99.3 6.6E-11 1.4E-15 114.2 13.1 122 6-129 684-811 (1373)
101 PRK11448 hsdR type I restricti 99.3 4.9E-11 1.1E-15 118.1 12.1 103 10-117 689-801 (1123)
102 KOG0953|consensus 99.2 1.3E-10 2.9E-15 104.6 10.8 113 9-126 347-474 (700)
103 COG1205 Distinct helicase fami 99.1 1.3E-10 2.8E-15 112.4 8.4 107 19-127 305-420 (851)
104 COG1203 CRISPR-associated heli 99.1 6E-10 1.3E-14 106.8 10.1 110 15-129 435-550 (733)
105 KOG4150|consensus 99.0 3.4E-10 7.3E-15 102.5 6.8 127 19-147 524-660 (1034)
106 KOG0947|consensus 99.0 6.2E-09 1.3E-13 98.9 14.9 118 8-129 556-723 (1248)
107 COG1643 HrpA HrpA-like helicas 99.0 6.1E-10 1.3E-14 106.7 8.2 108 20-130 259-388 (845)
108 KOG0385|consensus 99.0 1.9E-09 4.1E-14 100.4 11.0 123 5-129 471-599 (971)
109 KOG0922|consensus 99.0 1.5E-09 3.3E-14 99.7 7.7 114 15-131 253-392 (674)
110 KOG0951|consensus 98.9 4.1E-09 8.9E-14 102.3 9.7 117 11-129 537-702 (1674)
111 KOG0390|consensus 98.9 6.5E-09 1.4E-13 98.3 10.3 108 20-129 595-707 (776)
112 KOG0387|consensus 98.9 6.8E-09 1.5E-13 97.0 8.3 123 5-129 530-658 (923)
113 KOG0948|consensus 98.9 3.3E-09 7.3E-14 98.5 6.3 81 49-129 449-539 (1041)
114 KOG0952|consensus 98.9 1.6E-08 3.5E-13 96.9 10.7 114 17-132 346-494 (1230)
115 KOG0920|consensus 98.9 6.1E-09 1.3E-13 100.0 7.9 119 8-129 401-544 (924)
116 KOG0923|consensus 98.8 8E-09 1.7E-13 95.0 7.2 123 2-127 453-604 (902)
117 KOG0392|consensus 98.8 3.1E-08 6.8E-13 96.1 10.0 108 20-129 1340-1454(1549)
118 PRK12903 secA preprotein trans 98.7 8.2E-08 1.8E-12 91.6 10.0 122 5-131 410-541 (925)
119 COG0553 HepA Superfamily II DN 98.7 1.3E-07 2.8E-12 92.0 11.7 123 5-129 692-822 (866)
120 KOG0924|consensus 98.7 2.8E-08 6E-13 91.8 5.7 112 17-129 560-697 (1042)
121 KOG0388|consensus 98.6 1.6E-07 3.4E-12 87.2 9.4 123 5-129 1028-1154(1185)
122 KOG0389|consensus 98.6 3.5E-07 7.6E-12 85.7 10.6 122 6-129 762-888 (941)
123 PRK12326 preprotein translocas 98.6 2.6E-07 5.7E-12 86.9 9.7 121 6-131 412-549 (764)
124 KOG0391|consensus 98.5 5.5E-07 1.2E-11 87.4 10.1 122 6-129 1261-1387(1958)
125 KOG1002|consensus 98.5 4.8E-07 1E-11 81.2 8.7 122 6-129 621-749 (791)
126 PRK12899 secA preprotein trans 98.5 1.1E-06 2.3E-11 84.9 10.6 121 6-131 553-683 (970)
127 KOG0926|consensus 98.4 3E-07 6.5E-12 86.4 6.0 79 49-128 607-703 (1172)
128 KOG0949|consensus 98.4 1.1E-06 2.4E-11 84.2 8.5 81 49-129 965-1048(1330)
129 KOG1000|consensus 98.4 2.3E-06 5E-11 76.9 9.5 115 5-121 472-593 (689)
130 PRK12901 secA preprotein trans 98.3 1.9E-06 4.2E-11 83.6 8.9 122 5-131 612-743 (1112)
131 COG1198 PriA Primosomal protei 98.3 6.5E-06 1.4E-10 78.4 11.7 99 36-134 494-608 (730)
132 PRK13103 secA preprotein trans 98.3 1.9E-06 4.1E-11 83.0 7.5 122 5-131 433-593 (913)
133 TIGR01407 dinG_rel DnaQ family 98.3 7.2E-06 1.6E-10 80.3 11.2 101 20-125 674-811 (850)
134 COG4581 Superfamily II RNA hel 98.2 3.5E-06 7.5E-11 82.3 7.7 81 50-130 448-538 (1041)
135 KOG1015|consensus 98.1 7.8E-06 1.7E-10 78.4 8.1 121 5-127 1126-1275(1567)
136 PF13307 Helicase_C_2: Helicas 98.1 1.8E-05 3.8E-10 62.6 7.8 76 20-101 9-92 (167)
137 KOG1123|consensus 98.0 3.5E-05 7.7E-10 69.6 8.9 107 19-132 542-656 (776)
138 COG1110 Reverse gyrase [DNA re 97.9 1.9E-05 4.2E-10 76.3 6.9 88 7-101 324-417 (1187)
139 KOG0386|consensus 97.9 2.6E-05 5.6E-10 75.2 7.8 106 20-127 726-834 (1157)
140 CHL00122 secA preprotein trans 97.9 7.3E-05 1.6E-09 72.0 10.7 80 6-89 409-491 (870)
141 TIGR00348 hsdR type I site-spe 97.9 0.00013 2.8E-09 69.7 12.3 105 21-128 515-650 (667)
142 KOG4439|consensus 97.8 0.00016 3.4E-09 67.7 10.5 104 17-122 743-849 (901)
143 PF06862 DUF1253: Protein of u 97.7 0.00084 1.8E-08 60.7 13.2 127 10-138 290-424 (442)
144 COG1199 DinG Rad3-related DNA 97.7 0.00025 5.5E-09 67.5 10.0 102 21-127 480-616 (654)
145 COG4889 Predicted helicase [Ge 97.6 4.3E-05 9.4E-10 73.1 3.8 105 21-127 461-586 (1518)
146 PRK08074 bifunctional ATP-depe 97.6 0.00042 9.2E-09 68.6 10.6 103 21-125 753-890 (928)
147 PF13959 DUF4217: Domain of un 97.6 5.5E-05 1.2E-09 50.3 2.6 40 190-229 2-42 (65)
148 PF13871 Helicase_C_4: Helicas 97.6 0.00044 9.6E-09 58.8 8.6 80 63-142 52-143 (278)
149 COG4096 HsdR Type I site-speci 97.5 0.00043 9.3E-09 66.0 8.8 104 9-116 412-525 (875)
150 PRK11747 dinG ATP-dependent DN 97.5 0.0013 2.8E-08 63.3 11.7 74 22-101 536-616 (697)
151 PRK07246 bifunctional ATP-depe 97.4 0.0018 3.9E-08 63.3 12.2 101 20-125 647-780 (820)
152 TIGR00596 rad1 DNA repair prot 97.4 0.00029 6.2E-09 68.4 6.4 49 77-128 431-513 (814)
153 KOG0925|consensus 97.4 0.00034 7.4E-09 63.2 6.4 108 15-129 248-387 (699)
154 smart00492 HELICc3 helicase su 97.3 0.0042 9E-08 47.7 10.6 67 35-101 4-79 (141)
155 PRK12902 secA preprotein trans 97.3 0.0015 3.2E-08 63.4 9.4 80 6-89 424-506 (939)
156 TIGR02562 cas3_yersinia CRISPR 97.2 0.0014 3.1E-08 64.4 8.3 82 34-118 768-881 (1110)
157 smart00491 HELICc2 helicase su 97.1 0.0052 1.1E-07 47.2 9.5 66 35-101 4-80 (142)
158 KOG1016|consensus 97.0 0.0034 7.5E-08 59.8 8.5 134 2-137 700-855 (1387)
159 PRK10917 ATP-dependent DNA hel 97.0 0.0028 6E-08 60.9 7.9 86 9-96 299-389 (681)
160 COG0653 SecA Preprotein transl 96.7 0.0023 4.9E-08 61.7 5.0 123 4-130 412-546 (822)
161 PRK05580 primosome assembly pr 96.6 0.011 2.3E-07 56.9 8.6 77 19-98 189-266 (679)
162 TIGR00604 rad3 DNA repair heli 96.5 0.023 5.1E-07 54.8 10.9 79 20-101 522-615 (705)
163 TIGR00595 priA primosomal prot 96.5 0.014 3E-07 54.1 8.4 76 19-97 24-100 (505)
164 TIGR00643 recG ATP-dependent D 96.4 0.0094 2E-07 56.8 7.0 86 9-96 273-363 (630)
165 TIGR03117 cas_csf4 CRISPR-asso 96.2 0.12 2.5E-06 49.3 12.9 78 19-101 470-561 (636)
166 KOG0701|consensus 96.0 0.0046 1E-07 63.4 2.9 92 24-117 296-399 (1606)
167 TIGR00580 mfd transcription-re 95.9 0.021 4.6E-07 56.6 7.0 77 18-96 498-579 (926)
168 KOG1001|consensus 95.8 0.0035 7.5E-08 59.8 1.0 116 5-122 522-641 (674)
169 COG1110 Reverse gyrase [DNA re 95.7 0.029 6.3E-07 55.1 6.7 61 20-82 125-191 (1187)
170 PF10593 Z1: Z1 domain; Inter 95.5 0.094 2E-06 43.9 8.3 100 33-138 98-202 (239)
171 PRK14873 primosome assembly pr 95.2 0.051 1.1E-06 52.0 6.8 90 6-98 173-265 (665)
172 KOG0921|consensus 95.2 0.029 6.3E-07 54.5 4.8 117 8-127 631-772 (1282)
173 COG1198 PriA Primosomal protei 95.0 0.041 8.8E-07 53.0 5.3 88 6-96 230-319 (730)
174 COG1200 RecG RecG-like helicas 94.9 0.081 1.8E-06 50.0 7.0 92 5-96 296-390 (677)
175 cd00268 DEADc DEAD-box helicas 94.8 0.17 3.7E-06 40.5 7.8 81 10-96 57-149 (203)
176 PF02399 Herpes_ori_bp: Origin 94.7 0.12 2.6E-06 50.0 7.6 98 13-118 275-378 (824)
177 KOG1513|consensus 94.7 0.057 1.2E-06 51.9 5.3 77 66-142 851-939 (1300)
178 PRK10689 transcription-repair 94.7 0.1 2.2E-06 53.0 7.4 76 19-96 648-728 (1147)
179 PRK14873 primosome assembly pr 94.2 0.37 7.9E-06 46.3 9.8 80 36-128 441-538 (665)
180 PRK14701 reverse gyrase; Provi 94.1 0.17 3.7E-06 53.1 7.7 61 19-81 121-187 (1638)
181 COG0513 SrmB Superfamily II DN 93.8 0.25 5.3E-06 46.0 7.6 68 23-96 102-180 (513)
182 PRK11634 ATP-dependent RNA hel 93.5 0.29 6.4E-06 46.7 7.7 72 19-96 73-155 (629)
183 KOG0951|consensus 93.5 0.49 1.1E-05 48.0 9.1 112 20-137 1359-1502(1674)
184 KOG0339|consensus 93.3 1.2 2.6E-05 41.2 10.7 71 20-96 296-376 (731)
185 PRK11776 ATP-dependent RNA hel 93.3 0.32 6.9E-06 44.4 7.4 71 20-96 72-153 (460)
186 PRK11192 ATP-dependent RNA hel 92.7 0.68 1.5E-05 41.9 8.6 71 20-96 73-153 (434)
187 TIGR01054 rgy reverse gyrase. 92.6 0.37 7.9E-06 49.3 7.2 60 20-81 121-187 (1171)
188 TIGR00614 recQ_fam ATP-depende 91.9 0.66 1.4E-05 42.6 7.5 60 20-81 51-110 (470)
189 TIGR01389 recQ ATP-dependent D 91.2 0.95 2.1E-05 42.8 8.0 60 20-81 53-112 (591)
190 KOG0331|consensus 90.4 1.9 4.2E-05 40.0 8.9 91 19-115 164-272 (519)
191 KOG2340|consensus 90.3 1.4 3.1E-05 40.9 7.8 113 20-134 552-673 (698)
192 PRK10590 ATP-dependent RNA hel 90.2 1.5 3.3E-05 40.0 8.2 70 21-96 76-155 (456)
193 cd01524 RHOD_Pyr_redox Member 89.9 0.59 1.3E-05 32.3 4.1 41 15-57 46-86 (90)
194 PRK04537 ATP-dependent RNA hel 88.8 1.4 3E-05 41.7 6.9 71 20-96 84-165 (572)
195 cd01523 RHOD_Lact_B Member of 88.5 0.69 1.5E-05 32.6 3.7 41 15-57 56-96 (100)
196 KOG0347|consensus 88.2 1 2.2E-05 42.0 5.4 53 22-80 265-321 (731)
197 PRK11057 ATP-dependent DNA hel 87.6 2.3 5.1E-05 40.4 7.7 59 20-80 65-123 (607)
198 KOG0298|consensus 87.2 0.85 1.8E-05 46.2 4.5 102 11-119 1212-1314(1394)
199 PRK04837 ATP-dependent RNA hel 86.6 3.8 8.3E-05 36.9 8.2 71 20-96 83-163 (423)
200 PF00270 DEAD: DEAD/DEAH box h 85.8 4.2 9.1E-05 31.0 7.1 72 19-96 43-125 (169)
201 KOG0389|consensus 85.2 2.1 4.6E-05 41.5 5.9 74 7-85 435-512 (941)
202 PLN03137 ATP-dependent DNA hel 84.9 3.5 7.7E-05 41.9 7.5 60 20-81 500-561 (1195)
203 COG1197 Mfd Transcription-repa 84.3 4.6 9.9E-05 40.9 8.0 77 18-96 641-722 (1139)
204 PRK09401 reverse gyrase; Revie 83.8 2.9 6.3E-05 42.9 6.6 60 19-80 122-187 (1176)
205 PTZ00110 helicase; Provisional 83.7 5.2 0.00011 37.6 7.9 71 20-96 203-283 (545)
206 PRK01297 ATP-dependent RNA hel 83.3 6.4 0.00014 36.1 8.2 72 20-96 162-243 (475)
207 smart00450 RHOD Rhodanese Homo 83.3 2.1 4.6E-05 29.2 4.0 39 17-57 53-92 (100)
208 COG0514 RecQ Superfamily II DN 82.0 5.1 0.00011 37.9 7.0 58 21-80 58-115 (590)
209 PRK13766 Hef nuclease; Provisi 81.9 5.4 0.00012 39.0 7.6 74 18-98 56-139 (773)
210 cd01444 GlpE_ST GlpE sulfurtra 81.1 2.8 6E-05 28.9 4.0 45 11-57 47-92 (96)
211 cd01529 4RHOD_Repeats Member o 81.1 3.8 8.3E-05 28.5 4.7 38 18-57 54-92 (96)
212 cd01518 RHOD_YceA Member of th 80.5 2.6 5.6E-05 29.7 3.7 38 18-57 59-97 (101)
213 TIGR00963 secA preprotein tran 80.2 4.6 9.9E-05 39.3 6.2 54 20-81 97-154 (745)
214 PRK12898 secA preprotein trans 79.1 5.8 0.00013 38.1 6.5 65 9-81 133-201 (656)
215 KOG0330|consensus 79.1 7.5 0.00016 34.9 6.6 82 8-95 117-209 (476)
216 PRK13104 secA preprotein trans 78.6 6.1 0.00013 39.2 6.5 55 19-81 122-180 (896)
217 cd01528 RHOD_2 Member of the R 78.4 4.2 9.2E-05 28.6 4.2 39 18-58 56-95 (101)
218 cd01533 4RHOD_Repeat_2 Member 78.2 4.1 8.8E-05 29.1 4.1 38 19-58 65-104 (109)
219 cd01527 RHOD_YgaP Member of th 77.9 4.4 9.5E-05 28.3 4.2 39 17-57 51-90 (99)
220 cd01526 RHOD_ThiF Member of th 77.8 3 6.5E-05 30.6 3.4 39 18-58 70-110 (122)
221 cd01520 RHOD_YbbB Member of th 77.5 3.7 7.9E-05 30.5 3.8 41 16-58 82-123 (128)
222 cd01521 RHOD_PspE2 Member of t 77.2 3.7 7.9E-05 29.5 3.7 42 16-57 60-101 (110)
223 cd01534 4RHOD_Repeat_3 Member 77.1 4.3 9.2E-05 28.2 3.9 36 20-57 56-91 (95)
224 TIGR03817 DECH_helic helicase/ 76.8 7.4 0.00016 38.1 6.6 71 19-96 80-163 (742)
225 cd00046 DEXDc DEAD-like helica 76.7 12 0.00027 26.6 6.5 57 19-81 29-88 (144)
226 PRK02362 ski2-like helicase; P 75.3 2.8 6.1E-05 40.8 3.3 78 10-96 57-143 (737)
227 cd01535 4RHOD_Repeat_4 Member 74.9 4.9 0.00011 30.7 4.0 44 12-57 41-85 (145)
228 cd01532 4RHOD_Repeat_1 Member 73.8 7.2 0.00016 26.9 4.4 39 19-57 49-88 (92)
229 cd01519 RHOD_HSP67B2 Member of 73.2 6.2 0.00014 27.7 4.0 37 19-57 65-102 (106)
230 COG1205 Distinct helicase fami 72.5 11 0.00024 37.5 6.6 69 9-81 105-176 (851)
231 PRK00162 glpE thiosulfate sulf 71.0 4.5 9.8E-05 28.8 2.8 46 10-57 48-94 (108)
232 PRK09751 putative ATP-dependen 70.2 13 0.00028 39.3 6.7 71 20-96 37-130 (1490)
233 cd01447 Polysulfide_ST Polysul 70.2 5.1 0.00011 28.0 2.9 38 18-57 59-97 (103)
234 PRK12899 secA preprotein trans 70.0 11 0.00023 37.8 5.8 52 22-81 137-192 (970)
235 cd01449 TST_Repeat_2 Thiosulfa 69.8 7.3 0.00016 28.0 3.8 37 19-57 77-114 (118)
236 PRK01415 hypothetical protein; 69.8 6.6 0.00014 33.0 3.9 42 16-59 167-209 (247)
237 PTZ00424 helicase 45; Provisio 69.6 32 0.0007 30.4 8.6 72 19-96 95-176 (401)
238 PF02602 HEM4: Uroporphyrinoge 69.2 9.9 0.00021 30.9 4.8 74 4-81 101-177 (231)
239 KOG0343|consensus 68.3 13 0.00028 35.1 5.6 54 20-80 141-198 (758)
240 PRK10310 PTS system galactitol 67.9 39 0.00084 23.7 7.0 62 22-90 4-69 (94)
241 cd01525 RHOD_Kc Member of the 67.9 7.7 0.00017 27.2 3.5 36 20-57 65-101 (105)
242 KOG0329|consensus 67.6 8.7 0.00019 32.7 4.1 84 7-96 94-191 (387)
243 cd01448 TST_Repeat_1 Thiosulfa 67.5 9.2 0.0002 27.7 3.9 39 17-57 76-116 (122)
244 PRK05320 rhodanese superfamily 66.3 9.6 0.00021 32.2 4.3 38 19-58 174-212 (257)
245 PF00581 Rhodanese: Rhodanese- 65.7 8.4 0.00018 27.0 3.3 41 15-57 62-108 (113)
246 COG1111 MPH1 ERCC4-like helica 65.0 16 0.00036 33.8 5.6 72 21-99 59-140 (542)
247 KOG0383|consensus 64.6 2.8 6E-05 40.4 0.7 77 6-85 616-696 (696)
248 PRK09200 preprotein translocas 64.6 14 0.0003 36.4 5.4 54 19-80 118-176 (790)
249 cd01522 RHOD_1 Member of the R 63.9 14 0.0003 26.9 4.2 38 18-57 62-100 (117)
250 PLN02160 thiosulfate sulfurtra 63.0 14 0.00031 27.8 4.3 38 18-57 79-117 (136)
251 KOG0385|consensus 62.9 22 0.00048 34.8 6.2 68 8-80 204-275 (971)
252 KOG0335|consensus 61.8 20 0.00044 33.0 5.7 70 21-96 153-232 (482)
253 smart00487 DEXDc DEAD-like hel 61.0 58 0.0013 24.6 7.7 71 20-96 54-135 (201)
254 PRK10287 thiosulfate:cyanide s 60.4 20 0.00044 25.7 4.5 37 19-57 59-95 (104)
255 PRK13767 ATP-dependent helicas 60.0 23 0.0005 35.4 6.2 71 20-96 84-178 (876)
256 PLN00206 DEAD-box ATP-dependen 59.0 40 0.00086 31.4 7.3 72 19-96 195-276 (518)
257 PRK09280 F0F1 ATP synthase sub 58.5 1.1E+02 0.0023 28.4 9.7 53 27-79 181-244 (463)
258 cd00158 RHOD Rhodanese Homolog 57.4 24 0.00052 23.3 4.3 40 16-57 46-86 (89)
259 KOG0338|consensus 57.3 33 0.00073 32.1 6.2 71 20-96 252-333 (691)
260 KOG0345|consensus 56.9 28 0.00061 32.2 5.6 70 22-96 81-163 (567)
261 COG1204 Superfamily II helicas 56.8 15 0.00033 36.0 4.3 82 6-96 61-152 (766)
262 KOG0350|consensus 56.5 31 0.00068 32.1 5.9 75 20-96 215-301 (620)
263 KOG0334|consensus 56.1 39 0.00085 34.0 6.8 55 20-80 438-496 (997)
264 PRK01172 ski2-like helicase; P 55.7 15 0.00033 35.4 4.0 70 18-96 63-141 (674)
265 PRK09189 uroporphyrinogen-III 55.5 25 0.00054 28.9 4.9 70 5-77 102-175 (240)
266 COG0135 TrpF Phosphoribosylant 54.7 75 0.0016 26.0 7.3 45 20-68 53-97 (208)
267 TIGR03865 PQQ_CXXCW PQQ-depend 54.4 24 0.00053 27.4 4.4 39 18-57 114-153 (162)
268 PRK13103 secA preprotein trans 53.6 32 0.00069 34.4 5.8 58 19-82 122-181 (913)
269 TIGR02981 phageshock_pspE phag 53.4 31 0.00067 24.5 4.5 36 19-56 57-92 (101)
270 PF02142 MGS: MGS-like domain 53.1 15 0.00032 25.7 2.7 43 39-81 23-69 (95)
271 cd01530 Cdc25 Cdc25 phosphatas 53.0 21 0.00046 26.2 3.7 38 18-57 66-117 (121)
272 COG0607 PspE Rhodanese-related 52.9 19 0.00041 25.2 3.3 38 18-57 59-97 (110)
273 PRK00142 putative rhodanese-re 52.4 21 0.00045 31.1 4.0 39 19-59 170-209 (314)
274 PRK12904 preprotein translocas 52.2 33 0.00071 34.1 5.7 54 20-81 122-179 (830)
275 PRK05752 uroporphyrinogen-III 51.5 61 0.0013 26.9 6.7 74 4-80 110-190 (255)
276 PF11496 HDA2-3: Class II hist 50.9 66 0.0014 27.8 6.8 110 18-129 115-245 (297)
277 smart00115 CASc Caspase, inter 49.8 1.5E+02 0.0032 24.6 9.7 87 18-110 6-106 (241)
278 PRK00254 ski2-like helicase; P 49.7 22 0.00048 34.6 4.2 69 19-96 67-144 (720)
279 PRK06827 phosphoribosylpyropho 49.7 59 0.0013 29.2 6.5 61 19-82 263-329 (382)
280 KOG1133|consensus 49.4 2.6E+02 0.0057 27.4 10.8 76 21-101 630-720 (821)
281 cd05212 NAD_bind_m-THF_DH_Cycl 49.1 86 0.0019 23.8 6.5 85 8-101 13-103 (140)
282 smart00851 MGS MGS-like domain 48.7 28 0.0006 24.0 3.5 42 39-81 23-64 (90)
283 KOG0351|consensus 48.7 46 0.001 33.6 6.2 57 22-80 306-364 (941)
284 PF01751 Toprim: Toprim domain 48.4 10 0.00022 26.7 1.3 63 24-88 2-76 (100)
285 TIGR00696 wecB_tagA_cpsF bacte 48.3 1.1E+02 0.0023 24.3 7.2 55 21-77 49-105 (177)
286 KOG0340|consensus 48.0 64 0.0014 28.9 6.2 65 10-80 65-133 (442)
287 TIGR03714 secA2 accessory Sec 47.6 44 0.00096 32.8 5.7 55 19-81 110-173 (762)
288 PF04364 DNA_pol3_chi: DNA pol 47.1 25 0.00053 26.6 3.3 73 15-100 24-96 (137)
289 PF10740 DUF2529: Protein of u 45.0 35 0.00075 27.1 3.8 38 16-53 78-115 (172)
290 smart00493 TOPRIM topoisomeras 44.9 78 0.0017 20.5 5.2 58 24-85 3-60 (76)
291 PRK13958 N-(5'-phosphoribosyl) 44.6 68 0.0015 26.1 5.7 37 20-60 53-89 (207)
292 PRK05928 hemD uroporphyrinogen 43.4 71 0.0015 25.9 5.8 41 7-50 111-152 (249)
293 PF14617 CMS1: U3-containing 9 42.2 93 0.002 26.3 6.2 72 20-96 126-207 (252)
294 KOG0327|consensus 42.2 24 0.00052 31.5 2.8 68 65-133 115-182 (397)
295 PF03808 Glyco_tran_WecB: Glyc 41.0 1.4E+02 0.003 23.3 6.9 55 21-77 49-106 (172)
296 PRK11493 sseA 3-mercaptopyruva 40.3 42 0.00091 28.5 4.0 38 18-57 229-267 (281)
297 cd06533 Glyco_transf_WecG_TagA 40.2 1.8E+02 0.0038 22.7 7.3 56 20-77 46-104 (171)
298 TIGR02621 cas3_GSU0051 CRISPR- 39.5 64 0.0014 32.2 5.5 55 20-80 62-143 (844)
299 cd08191 HHD 6-hydroxyhexanoate 39.4 1.5E+02 0.0031 26.5 7.5 70 7-78 11-85 (386)
300 PRK05597 molybdopterin biosynt 39.4 45 0.00098 29.5 4.2 38 18-57 312-350 (355)
301 COG3587 Restriction endonuclea 39.2 33 0.00071 34.0 3.4 46 71-116 482-527 (985)
302 COG4152 ABC-type uncharacteriz 39.1 72 0.0016 27.2 5.0 80 8-95 167-247 (300)
303 TIGR03590 PseG pseudaminic aci 38.9 2.4E+02 0.0052 23.8 8.6 32 73-107 104-135 (279)
304 PRK11784 tRNA 2-selenouridine 38.6 1.2E+02 0.0026 26.8 6.7 48 19-69 87-135 (345)
305 TIGR03167 tRNA_sel_U_synt tRNA 37.6 49 0.0011 28.8 4.0 39 19-59 73-112 (311)
306 cd06578 HemD Uroporphyrinogen- 37.1 1.1E+02 0.0023 24.4 5.9 43 5-50 106-149 (239)
307 PRK07878 molybdopterin biosynt 36.9 47 0.001 29.8 3.9 42 15-58 338-380 (392)
308 PRK15483 type III restriction- 36.7 38 0.00083 34.2 3.5 45 72-116 501-545 (986)
309 COG0610 Type I site-specific r 36.5 1.4E+02 0.0031 30.3 7.5 58 69-127 590-651 (962)
310 PRK07411 hypothetical protein; 36.2 56 0.0012 29.3 4.3 41 16-58 338-378 (390)
311 PRK07960 fliI flagellum-specif 36.0 3.6E+02 0.0077 25.0 11.1 11 103-113 305-315 (455)
312 KOG0342|consensus 35.8 1.5E+02 0.0032 27.7 6.8 55 20-80 154-213 (543)
313 cd00032 CASc Caspase, interleu 35.5 2.5E+02 0.0055 23.1 11.1 87 19-111 8-108 (243)
314 cd01443 Cdc25_Acr2p Cdc25 enzy 35.3 79 0.0017 22.5 4.3 38 20-57 66-109 (113)
315 PLN02522 ATP citrate (pro-S)-l 35.1 1.5E+02 0.0032 28.5 7.1 65 10-76 69-134 (608)
316 cd01423 MGS_CPS_I_III Methylgl 34.7 83 0.0018 22.6 4.4 19 62-80 61-79 (116)
317 PRK01222 N-(5'-phosphoribosyl) 34.4 1.8E+02 0.0039 23.6 6.7 38 20-61 55-92 (210)
318 PHA03371 circ protein; Provisi 34.3 36 0.00078 28.2 2.5 39 81-119 29-81 (240)
319 TIGR01039 atpD ATP synthase, F 33.6 3.9E+02 0.0085 24.7 10.4 56 23-78 174-242 (461)
320 KOG0352|consensus 33.2 1.1E+02 0.0025 28.2 5.6 60 20-81 61-122 (641)
321 COG0074 SucD Succinyl-CoA synt 33.0 2.1E+02 0.0046 24.7 6.9 65 9-76 56-120 (293)
322 PF09664 DUF2399: Protein of u 32.9 2E+02 0.0044 22.1 6.4 62 24-88 21-82 (152)
323 TIGR02679 conserved hypothetic 32.8 80 0.0017 28.4 4.7 40 49-88 275-314 (385)
324 PLN02363 phosphoribosylanthran 32.6 1.2E+02 0.0025 25.7 5.4 37 20-60 100-136 (256)
325 TIGR01042 V-ATPase_V1_A V-type 32.5 4.6E+02 0.0099 25.2 13.5 33 49-81 294-333 (591)
326 PRK05728 DNA polymerase III su 32.4 2.2E+02 0.0048 21.5 9.0 70 15-99 24-94 (142)
327 PF10137 TIR-like: Predicted n 32.3 2E+02 0.0042 21.5 6.0 53 28-80 6-60 (125)
328 TIGR03496 FliI_clade1 flagella 32.3 3.7E+02 0.0081 24.4 8.9 32 49-80 196-234 (411)
329 PRK09548 PTS system ascorbate- 32.3 2.7E+02 0.0059 26.7 8.2 63 19-88 505-570 (602)
330 COG4098 comFA Superfamily II D 31.8 62 0.0013 28.9 3.6 96 6-116 129-231 (441)
331 TIGR00631 uvrb excinuclease AB 31.7 2.9E+02 0.0062 26.8 8.5 90 20-111 54-174 (655)
332 PF12683 DUF3798: Protein of u 31.4 56 0.0012 27.9 3.2 79 18-104 60-144 (275)
333 PRK05298 excinuclease ABC subu 31.0 3.2E+02 0.0069 26.4 8.7 93 20-114 57-180 (652)
334 PRK00553 ribose-phosphate pyro 30.7 1.6E+02 0.0035 25.9 6.2 62 19-82 217-284 (332)
335 PLN02723 3-mercaptopyruvate su 30.7 75 0.0016 27.6 4.1 38 18-57 267-305 (320)
336 PRK08972 fliI flagellum-specif 30.4 4.4E+02 0.0095 24.3 10.3 52 28-79 197-258 (444)
337 PRK08762 molybdopterin biosynt 30.2 80 0.0017 28.1 4.3 37 18-56 55-92 (376)
338 PRK02269 ribose-phosphate pyro 30.1 1.7E+02 0.0038 25.5 6.3 58 19-82 216-279 (320)
339 PF01583 APS_kinase: Adenylyls 30.1 2.3E+02 0.005 22.0 6.3 37 33-69 17-64 (156)
340 cd05567 PTS_IIB_mannitol PTS_I 29.9 1.8E+02 0.0039 19.7 6.9 76 22-108 2-82 (87)
341 PHA02653 RNA helicase NPH-II; 29.7 1.9E+02 0.0041 28.2 6.9 69 20-96 222-297 (675)
342 cd00405 PRAI Phosphoribosylant 29.4 2.9E+02 0.0063 21.9 7.4 36 21-60 52-87 (203)
343 PF09419 PGP_phosphatase: Mito 29.0 2.1E+02 0.0046 22.5 6.0 58 10-71 67-130 (168)
344 cd01446 DSP_MapKP N-terminal r 28.7 74 0.0016 23.3 3.3 39 19-57 74-122 (132)
345 KOG0337|consensus 28.7 1.4E+02 0.0031 27.4 5.4 69 20-96 90-170 (529)
346 PRK01221 putative deoxyhypusin 28.4 1.1E+02 0.0025 26.6 4.7 56 26-81 35-91 (312)
347 PF00465 Fe-ADH: Iron-containi 28.2 2.3E+02 0.005 24.9 6.8 70 7-79 11-85 (366)
348 COG2519 GCD14 tRNA(1-methylade 28.1 90 0.0019 26.4 3.9 31 15-47 183-213 (256)
349 cd01531 Acr2p Eukaryotic arsen 27.8 1.3E+02 0.0028 21.3 4.4 40 19-58 61-108 (113)
350 PF13685 Fe-ADH_2: Iron-contai 27.8 1.8E+02 0.0038 24.5 5.7 71 7-78 7-81 (250)
351 TIGR01043 ATP_syn_A_arch ATP s 27.5 5.5E+02 0.012 24.6 12.9 33 49-81 288-327 (578)
352 cd08183 Fe-ADH2 Iron-containin 27.4 3.1E+02 0.0068 24.2 7.6 69 7-78 11-81 (374)
353 TIGR02313 HpaI-NOT-DapA 2,4-di 27.4 2.6E+02 0.0055 23.9 6.8 47 33-79 21-76 (294)
354 PTZ00240 60S ribosomal protein 27.3 1.6E+02 0.0036 25.8 5.5 64 16-115 87-153 (323)
355 cd01445 TST_Repeats Thiosulfat 27.1 1.3E+02 0.0028 22.6 4.4 39 19-57 94-134 (138)
356 TIGR00096 probable S-adenosylm 27.0 1.4E+02 0.0029 25.6 4.9 66 23-92 27-92 (276)
357 PRK07594 type III secretion sy 27.0 4.2E+02 0.009 24.3 8.3 32 49-80 214-252 (433)
358 cd00291 SirA_YedF_YeeD SirA, Y 26.9 1.4E+02 0.003 19.0 4.0 45 7-53 13-57 (69)
359 PF10657 RC-P840_PscD: Photosy 26.9 92 0.002 23.2 3.3 38 62-99 64-107 (144)
360 PRK09281 F0F1 ATP synthase sub 26.8 5.3E+02 0.012 24.1 10.0 48 33-80 203-261 (502)
361 PRK08118 topology modulation p 26.7 2.8E+02 0.0061 21.3 6.4 81 21-102 2-90 (167)
362 PF01113 DapB_N: Dihydrodipico 26.7 2.2E+02 0.0047 20.8 5.5 56 20-80 68-123 (124)
363 PF13167 GTP-bdg_N: GTP-bindin 26.6 2.4E+02 0.0051 20.0 6.0 44 20-68 36-79 (95)
364 cd01133 F1-ATPase_beta F1 ATP 26.6 3.4E+02 0.0073 23.2 7.2 29 49-77 131-167 (274)
365 PRK04196 V-type ATP synthase s 26.5 5.2E+02 0.011 23.9 11.1 58 23-80 177-247 (460)
366 COG1054 Predicted sulfurtransf 26.4 40 0.00086 29.2 1.6 39 19-59 171-210 (308)
367 cd08194 Fe-ADH6 Iron-containin 26.3 3.3E+02 0.0072 24.1 7.5 71 7-78 11-86 (375)
368 PF13245 AAA_19: Part of AAA d 26.3 97 0.0021 20.7 3.2 32 20-54 42-74 (76)
369 COG1587 HemD Uroporphyrinogen- 26.2 2.4E+02 0.0051 23.3 6.3 74 5-81 107-184 (248)
370 PF01380 SIS: SIS domain SIS d 26.2 1.4E+02 0.0031 21.3 4.5 42 14-55 48-89 (131)
371 cd08190 HOT Hydroxyacid-oxoaci 26.2 3.5E+02 0.0077 24.4 7.8 71 7-78 11-86 (414)
372 TIGR03249 KdgD 5-dehydro-4-deo 25.9 2.6E+02 0.0057 23.8 6.6 48 33-80 26-82 (296)
373 PRK09590 celB cellobiose phosp 25.9 2.5E+02 0.0055 20.1 6.0 37 21-57 2-40 (104)
374 PF00697 PRAI: N-(5'phosphorib 25.9 1.9E+02 0.0042 23.1 5.4 37 20-60 49-85 (197)
375 cd08187 BDH Butanol dehydrogen 25.6 3.2E+02 0.007 24.2 7.3 70 7-78 17-92 (382)
376 PF03853 YjeF_N: YjeF-related 25.4 3.2E+02 0.007 21.1 7.1 79 18-96 23-105 (169)
377 cd08550 GlyDH-like Glycerol_de 25.3 3.3E+02 0.0072 23.8 7.3 69 7-77 11-82 (349)
378 cd05563 PTS_IIB_ascorbate PTS_ 25.2 2.1E+02 0.0047 19.0 7.9 78 23-110 2-82 (86)
379 PF03129 HGTP_anticodon: Antic 25.1 2.2E+02 0.0048 19.1 6.6 42 23-64 3-47 (94)
380 COG1201 Lhr Lhr-like helicases 25.0 1.3E+02 0.0027 30.0 4.8 51 42-96 97-155 (814)
381 PRK06936 type III secretion sy 24.9 4.9E+02 0.011 24.0 8.3 54 27-80 196-259 (439)
382 PF13380 CoA_binding_2: CoA bi 24.8 2.7E+02 0.0059 20.1 5.7 52 19-76 55-106 (116)
383 cd05014 SIS_Kpsf KpsF-like pro 24.8 1.7E+02 0.0037 20.9 4.7 35 20-54 48-82 (128)
384 TIGR03305 alt_F1F0_F1_bet alte 24.7 5.6E+02 0.012 23.7 11.1 32 49-80 200-239 (449)
385 cd08186 Fe-ADH8 Iron-containin 24.5 3.6E+02 0.0078 24.0 7.4 72 7-78 11-90 (383)
386 PRK07199 phosphoribosylpyropho 24.4 3.1E+02 0.0068 23.6 6.8 58 19-82 210-273 (301)
387 PRK03170 dihydrodipicolinate s 24.1 3.1E+02 0.0068 23.2 6.8 48 33-80 22-78 (292)
388 PF02302 PTS_IIB: PTS system, 23.9 2.1E+02 0.0044 19.2 4.7 55 22-83 1-58 (90)
389 PF09664 DUF2399: Protein of u 23.9 2.3E+02 0.005 21.8 5.3 49 12-61 32-80 (152)
390 cd01542 PBP1_TreR_like Ligand- 23.8 2.7E+02 0.0058 22.3 6.1 44 34-77 17-60 (259)
391 KOG1502|consensus 23.8 3.3E+02 0.0072 24.0 6.8 79 24-102 8-90 (327)
392 PF03610 EIIA-man: PTS system 23.7 2.8E+02 0.006 19.8 7.2 60 23-82 2-67 (116)
393 cd01422 MGS Methylglyoxal synt 23.5 1.1E+02 0.0025 22.2 3.4 41 40-81 38-79 (115)
394 PRK14698 V-type ATP synthase s 23.4 8.3E+02 0.018 25.2 11.5 34 49-82 722-762 (1017)
395 PLN02723 3-mercaptopyruvate su 23.4 1.1E+02 0.0024 26.6 3.8 47 10-57 91-140 (320)
396 PRK06646 DNA polymerase III su 23.0 3.6E+02 0.0078 20.8 8.8 70 15-99 24-93 (154)
397 COG0353 RecR Recombinational D 22.9 2.5E+02 0.0053 22.8 5.3 63 20-85 78-149 (198)
398 PRK09860 putative alcohol dehy 22.9 3.3E+02 0.0071 24.3 6.9 72 6-78 18-94 (383)
399 cd08176 LPO Lactadehyde:propan 22.9 3E+02 0.0065 24.4 6.6 71 7-78 16-91 (377)
400 COG0329 DapA Dihydrodipicolina 22.8 3.2E+02 0.007 23.5 6.6 47 33-79 25-80 (299)
401 PRK05688 fliI flagellum-specif 22.8 6.1E+02 0.013 23.4 10.8 11 103-113 298-308 (451)
402 COG0478 RIO-like serine/threon 22.6 73 0.0016 27.6 2.4 30 47-90 219-248 (304)
403 cd08189 Fe-ADH5 Iron-containin 22.6 4.2E+02 0.0091 23.4 7.5 71 7-78 14-89 (374)
404 cd01132 F1_ATPase_alpha F1 ATP 22.4 5E+02 0.011 22.2 7.5 46 33-78 110-166 (274)
405 COG0529 CysC Adenylylsulfate k 22.3 3.9E+02 0.0085 21.6 6.3 48 20-68 22-84 (197)
406 cd00408 DHDPS-like Dihydrodipi 22.3 3.8E+02 0.0083 22.4 6.9 47 33-79 18-73 (281)
407 PF05673 DUF815: Protein of un 22.2 4.3E+02 0.0093 22.3 6.9 136 12-156 71-223 (249)
408 TIGR03498 FliI_clade3 flagella 22.0 5.7E+02 0.012 23.3 8.2 72 9-80 155-237 (418)
409 cd00951 KDGDH 5-dehydro-4-deox 21.8 3.6E+02 0.0077 22.9 6.6 47 33-79 21-76 (289)
410 KOG2501|consensus 21.7 2.9E+02 0.0063 21.6 5.4 67 6-77 54-120 (157)
411 cd08185 Fe-ADH1 Iron-containin 21.7 4.2E+02 0.0092 23.4 7.3 71 6-78 13-89 (380)
412 TIGR00036 dapB dihydrodipicoli 21.5 4.9E+02 0.011 21.8 7.9 58 20-80 69-126 (266)
413 cd05564 PTS_IIB_chitobiose_lic 21.4 2.9E+02 0.0063 19.2 5.6 52 22-80 1-54 (96)
414 TIGR01041 ATP_syn_B_arch ATP s 21.4 5.7E+02 0.012 23.7 8.1 58 23-80 175-245 (458)
415 cd05566 PTS_IIB_galactitol PTS 21.3 2.7E+02 0.0058 18.7 6.8 61 22-89 2-65 (89)
416 PRK03692 putative UDP-N-acetyl 21.3 4.9E+02 0.011 21.7 7.4 56 20-77 105-162 (243)
417 PLN02417 dihydrodipicolinate s 21.3 4.1E+02 0.009 22.4 6.9 48 33-80 22-78 (280)
418 COG5435 Uncharacterized conser 21.2 1.1E+02 0.0024 23.6 2.9 40 66-110 15-57 (147)
419 PRK05723 flavodoxin; Provision 21.2 3.8E+02 0.0082 20.4 10.6 82 31-131 14-95 (151)
420 PRK13111 trpA tryptophan synth 20.9 5.1E+02 0.011 21.8 7.5 79 2-81 68-152 (258)
421 TIGR00853 pts-lac PTS system, 20.8 3E+02 0.0066 19.2 6.1 38 20-57 3-42 (95)
422 COG3141 DNA damage-inducible g 20.7 2.6E+02 0.0056 19.6 4.3 43 188-230 32-74 (97)
423 cd00952 CHBPH_aldolase Trans-o 20.7 5.5E+02 0.012 22.1 10.3 48 33-80 29-85 (309)
424 COG0300 DltE Short-chain dehyd 20.6 5.1E+02 0.011 22.0 7.1 58 20-79 30-91 (265)
425 KOG1132|consensus 20.6 7.6E+02 0.017 25.0 9.0 78 21-101 562-656 (945)
426 PF14824 Sirohm_synth_M: Siroh 20.5 65 0.0014 17.8 1.1 12 70-81 2-13 (30)
427 cd03418 GRX_GRXb_1_3_like Glut 20.5 2.4E+02 0.0052 17.9 6.9 45 23-68 2-46 (75)
428 COG1922 WecG Teichoic acid bio 20.5 4.8E+02 0.01 22.1 6.9 62 15-77 102-166 (253)
429 cd03031 GRX_GRX_like Glutaredo 20.2 4.1E+02 0.0088 20.3 7.1 47 22-68 1-52 (147)
430 cd08170 GlyDH Glycerol dehydro 20.0 5E+02 0.011 22.6 7.4 70 7-78 11-83 (351)
No 1
>KOG0345|consensus
Probab=100.00 E-value=2.3e-35 Score=257.16 Aligned_cols=192 Identities=28% Similarity=0.348 Sum_probs=158.1
Q ss_pred CCCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHH--CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEec
Q psy17587 2 KAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMK--AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIAT 79 (231)
Q Consensus 2 ~~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~--~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT 79 (231)
++.+|+.+|+++|..+...+.+|+|..+ ..++.....|.. .+.++..+||.|.+..|.++++.|++..-.+|+||
T Consensus 238 ~a~eK~~~lv~~L~~~~~kK~iVFF~TC---asVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T 314 (567)
T KOG0345|consen 238 EADEKLSQLVHLLNNNKDKKCIVFFPTC---ASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT 314 (567)
T ss_pred cHHHHHHHHHHHHhccccccEEEEecCc---chHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEee
Confidence 5678999999999987656666655443 336777666654 36889999999999999999999999888999999
Q ss_pred CccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHHhhc
Q psy17587 80 SVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWAED 159 (231)
Q Consensus 80 ~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 159 (231)
|+++||||||+|++||+||+|.+++.|+||+|||||.|+.|.+++|+.+.+.. +++++...+.+..+.+... .
T Consensus 315 DVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a----YveFl~i~~~v~le~~~~e---~ 387 (567)
T KOG0345|consen 315 DVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEA----YVEFLRIKGKVELERIDTE---K 387 (567)
T ss_pred hhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHH----HHHHHHhcCccchhhhccc---c
Confidence 99999999999999999999999999999999999999999999999997664 7888876654322222100 0
Q ss_pred hhhhhccccCCCCCcccchhhHHhhhcHHHHHHHHHhcCCCCcHHHHHHHHhhHHHHHhHHHHHHHHHHh
Q psy17587 160 LIVRTFCFRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKILAEGLVWLRDYKQRVDQRIAR 229 (231)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~s~~r~y~~~~~~~i~~ 229 (231)
....+...+..+..++++.+++..++||||+|+|++|.+|+|||
T Consensus 388 --------------------------~~~~~~~~ir~~~~~DR~~~dkG~kAFVS~VraY~~H~cs~Ifr 431 (567)
T KOG0345|consen 388 --------------------------ASLSVYQDIRSIISKDRAVLDKGLKAFVSHVRAYKKHHCSYIFR 431 (567)
T ss_pred --------------------------cchhHHHHHHHHhcccHHHHhhhHHHHHHHHHHHhhcceeEEEe
Confidence 00014566778888899999999999999999999999999997
No 2
>KOG0331|consensus
Probab=100.00 E-value=2.8e-33 Score=251.03 Aligned_cols=151 Identities=40% Similarity=0.654 Sum_probs=139.3
Q ss_pred chhhhhcccccc--CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 6 PCLSLHGGIDQY--DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 6 k~~~L~~~L~~~--~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
|...|..+|..+ +++.++||||+++ ..|+.|+..|...++++.++||+.++.+|..+++.|++|+..||||||+++
T Consensus 325 K~~~l~~lL~~~~~~~~~KvIIFc~tk--r~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAa 402 (519)
T KOG0331|consen 325 KLRKLGKLLEDISSDSEGKVIIFCETK--RTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAA 402 (519)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEecch--hhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEccccc
Confidence 344555555555 3577999999999 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHHhh
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWAE 158 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 158 (231)
||||+|+|++|||||+|.++++|+||+|||||+|+.|.+++|++..+......+.+.+...++.+|+.+..+...
T Consensus 403 RGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 403 RGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARV 477 (519)
T ss_pred ccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887653
No 3
>KOG0328|consensus
Probab=99.97 E-value=6e-32 Score=223.27 Aligned_cols=148 Identities=34% Similarity=0.532 Sum_probs=132.6
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
.+||-.+|-++-.... -...|||||++ ..++.|.+.++..++.+.++||+|+++||.+++.+||+|+.+||++||+.
T Consensus 250 EewKfdtLcdLYd~Lt-ItQavIFcnTk--~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVw 326 (400)
T KOG0328|consen 250 EEWKFDTLCDLYDTLT-ITQAVIFCNTK--RKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVW 326 (400)
T ss_pred hhhhHhHHHHHhhhhe-hheEEEEeccc--chhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechh
Confidence 3456555555443332 45566699998 67999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHH
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLD 153 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 153 (231)
+||+|+|.|++|||||+|.+.+.|+||+||.||-|++|.++.|+...+...++++++++.....++|..+.
T Consensus 327 aRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nva 397 (400)
T KOG0328|consen 327 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVA 397 (400)
T ss_pred hccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999988888887643
No 4
>KOG0342|consensus
Probab=99.97 E-value=3.2e-31 Score=232.35 Aligned_cols=130 Identities=30% Similarity=0.399 Sum_probs=121.7
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccccc
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGL 86 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gl 86 (231)
...|+++|+++....+|+|||++. ..+..+++.|....++|.-+||++++..|..+..+|++.+.-|||||||++||+
T Consensus 317 f~ll~~~LKk~~~~~KiiVF~sT~--~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGl 394 (543)
T KOG0342|consen 317 FSLLYTFLKKNIKRYKIIVFFSTC--MSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGL 394 (543)
T ss_pred HHHHHHHHHHhcCCceEEEEechh--hHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccC
Confidence 678899999998889999999987 669999999998899999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHH
Q psy17587 87 DVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEII 138 (231)
Q Consensus 87 dip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~ 138 (231)
|+|+|++||+||+|.++.+|+||+||+||.|..|.+++++.|.+..+++.+.
T Consensus 395 D~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 395 DIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988655443
No 5
>KOG0333|consensus
Probab=99.97 E-value=6.7e-31 Score=231.83 Aligned_cols=146 Identities=38% Similarity=0.560 Sum_probs=131.7
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
..|...|.+.|..+ ....+|||+|.+ +.|+.|++.|.+.|+++..+||+-++++|..+++.|++|..+||||||+++
T Consensus 502 d~k~kkL~eil~~~-~~ppiIIFvN~k--k~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAg 578 (673)
T KOG0333|consen 502 DEKRKKLIEILESN-FDPPIIIFVNTK--KGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAG 578 (673)
T ss_pred hHHHHHHHHHHHhC-CCCCEEEEEech--hhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 44567788888777 567788899998 889999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHH-hCCCCCchhH
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALE-ASGVPIPEDL 152 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~-~~~~~~~~~l 152 (231)
||||+|+|++|||||++.+.++|.||+||+||+|+.|.+++|+++.+...+.++.+.+. ......|..+
T Consensus 579 RGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~El 648 (673)
T KOG0333|consen 579 RGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPEL 648 (673)
T ss_pred cCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhh
Confidence 99999999999999999999999999999999999999999999999998888888665 3444455543
No 6
>KOG0330|consensus
Probab=99.97 E-value=1.4e-30 Score=222.84 Aligned_cols=142 Identities=32% Similarity=0.460 Sum_probs=131.6
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
.+||-..|+.+|++.. +..+||||++. .+++.++-.|+..|+.+..+||.|++..|..+++.|++|..+||||||++
T Consensus 284 ~k~K~~yLV~ll~e~~-g~s~iVF~~t~--~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVa 360 (476)
T KOG0330|consen 284 GKDKDTYLVYLLNELA-GNSVIVFCNTC--NTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVA 360 (476)
T ss_pred ccccchhHHHHHHhhc-CCcEEEEEecc--chHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchh
Confidence 4678888888888665 47788899988 66999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCC
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVP 147 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~ 147 (231)
+||+|+|.|++|||||+|.+..+|+||+||+||+|..|.+|+|++..|.+....++..+.++...
T Consensus 361 SRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 361 SRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred cccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999998888776644
No 7
>PTZ00110 helicase; Provisional
Probab=99.97 E-value=8.3e-30 Score=235.58 Aligned_cols=153 Identities=40% Similarity=0.627 Sum_probs=141.3
Q ss_pred chhhhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 6 PCLSLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 6 k~~~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
|...|.++|.... .+.++||||+++ ..++.|+..|...++.+..+||+|++++|..++++|++|+.+|||||++++|
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~--~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~r 439 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETK--KGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASR 439 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecCh--HHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhc
Confidence 4555666665544 567899999998 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHHhhch
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWAEDL 160 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 160 (231)
|||+|+|++|||||+|.++++|+||+||+||.|+.|.|++|+++.+...+.++.+.+...++++|+++.++.....
T Consensus 440 GIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~ 515 (545)
T PTZ00110 440 GLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS 515 (545)
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876544
No 8
>KOG0341|consensus
Probab=99.97 E-value=5.3e-30 Score=219.59 Aligned_cols=176 Identities=31% Similarity=0.449 Sum_probs=154.4
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
-+.|+..|+++|++.. ..++|||..+ .-++.++++|.-+|..++.+|||-++++|...++.|+.|+.+||||||++
T Consensus 406 qEaKiVylLeCLQKT~--PpVLIFaEkK--~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVA 481 (610)
T KOG0341|consen 406 QEAKIVYLLECLQKTS--PPVLIFAEKK--ADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVA 481 (610)
T ss_pred hhhhhhhHHHHhccCC--CceEEEeccc--cChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecch
Confidence 4678999999999874 6788899988 56999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEeccc-chHHHHHHHHHHHhCCCCCchhHHHHHhhchh
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLE-QERHAGEIIRALEASGVPIPEDLDKMWAEDLI 161 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 161 (231)
+.|+|+|++.+|||||+|..+++|+||+||+||.|+.|.+.+|++.. +...+.++..++...++.+|+.+..+......
T Consensus 482 SKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~E~ 561 (610)
T KOG0341|consen 482 SKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPMEE 561 (610)
T ss_pred hccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999999999977 56777888889999999999999988764331
Q ss_pred --h-----hhccccCCCCCcccchhhHH
Q psy17587 162 --V-----RTFCFRAGNKGFAYTFITLE 182 (231)
Q Consensus 162 --~-----~~~~~~~~~~~~~~~~~~~~ 182 (231)
. ..+|--.+|.|+.+++-...
T Consensus 562 ~~~a~~~~~kGCayCgGLGHRItdCPKl 589 (610)
T KOG0341|consen 562 ETIADAGGEKGCAYCGGLGHRITDCPKL 589 (610)
T ss_pred cccccCCCccccccccCCCcccccCchh
Confidence 1 11233457888888874443
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.2e-29 Score=232.79 Aligned_cols=137 Identities=41% Similarity=0.626 Sum_probs=125.7
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.|+..|..+++..... ++||||+++ ..++.|+..|...|+++..+||+|++++|.++++.|++|+.+||||||+++|
T Consensus 259 ~k~~~L~~ll~~~~~~-~~IVF~~tk--~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaR 335 (513)
T COG0513 259 EKLELLLKLLKDEDEG-RVIVFVRTK--RLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAAR 335 (513)
T ss_pred HHHHHHHHHHhcCCCC-eEEEEeCcH--HHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhc
Confidence 3777888888777655 577799998 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEeccc-chHHHHHHHHHHHhC
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLE-QERHAGEIIRALEAS 144 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-~~~~~~~~~~~l~~~ 144 (231)
|||+|+|++|||||+|.++++|+||+||+||+|..|.+++|+++. +...+..+.+.+...
T Consensus 336 GiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 336 GLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred cCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999986 777777787776554
No 10
>KOG0336|consensus
Probab=99.96 E-value=9.1e-30 Score=219.35 Aligned_cols=153 Identities=35% Similarity=0.560 Sum_probs=142.4
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
|....-.++....+..++||||.++ ..++.|+..|...|+.+.++||+-++.+|+.++++|++|+++||||||+++||
T Consensus 451 k~~~~~~f~~~ms~ndKvIiFv~~K--~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRG 528 (629)
T KOG0336|consen 451 KLEIVQFFVANMSSNDKVIIFVSRK--VMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRG 528 (629)
T ss_pred HHHHHHHHHHhcCCCceEEEEEech--hhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcC
Confidence 3444455567777889999999999 55999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHHhhch
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWAEDL 160 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 160 (231)
+|+|++.+|+|||+|.++++|+||+||+||+|+.|.+++|++.++...+.++++.|...++++|++|..++..-+
T Consensus 529 lDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk 603 (629)
T KOG0336|consen 529 LDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYK 603 (629)
T ss_pred CCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877544
No 11
>KOG0348|consensus
Probab=99.96 E-value=1.7e-28 Score=217.11 Aligned_cols=205 Identities=26% Similarity=0.359 Sum_probs=150.3
Q ss_pred hhhhhccc---cccCCCCeEEEEcCChhHHHHHHHHHHHHHC----------------------CCCeeeccCCCCHHHH
Q psy17587 7 CLSLHGGI---DQYDRDSTIVDFKNGKVRLLVCAIVKELMKA----------------------GYPCLSLHGGIDQYDR 61 (231)
Q Consensus 7 ~~~L~~~L---~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~----------------------~~~~~~lhg~~~~~~R 61 (231)
+.+|..+| -+....+++|||..+. +.+++=+..|... +.++.-+||+|++++|
T Consensus 409 LV~Laa~L~~~~k~~~~qk~iVF~S~~--d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeR 486 (708)
T KOG0348|consen 409 LVALAALLLNKVKFEEKQKMIVFFSCS--DSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEER 486 (708)
T ss_pred HHHHHHHHHHHhhhhhhceeEEEEech--hHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHH
Confidence 34444444 2333466777787765 6677766665321 4668899999999999
Q ss_pred HHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHH
Q psy17587 62 DSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRAL 141 (231)
Q Consensus 62 ~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l 141 (231)
..+++.|+...-.||+||||++||+|+|+|.+||+||+|.++.+|+||+||++|.|..|.+++|+.|.+.++ .+.+
T Consensus 487 ts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey----~~~l 562 (708)
T KOG0348|consen 487 TSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEY----VNYL 562 (708)
T ss_pred HHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHH----HHHH
Confidence 999999999988999999999999999999999999999999999999999999999999999999999873 4444
Q ss_pred HhCCCCCchhHHHHHhhchhhhhccccCCCCCcccchhhHHhhhcHHHHHHHHHhcCCCCcHHHHHHHHhhHHHHHhHHH
Q psy17587 142 EASGVPIPEDLDKMWAEDLIVRTFCFRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKILAEGLVWLRDYKQ 221 (231)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~s~~r~y~~ 221 (231)
+.....+.+. +....+..++...+. ....+....+...+..++.+...+++....+.++|+||+|+|+-
T Consensus 563 ~~~~~~l~q~-----~~~~~l~~~~~~~~k------~~~~e~~~~at~~q~~~e~~~~~~~~~~~~a~kaf~S~vr~Yat 631 (708)
T KOG0348|consen 563 KKHHIMLLQF-----DMEILLPAFKPRKDK------AKTKEWQERATTLQLNLERLVVGDEAMKNLAKKAFVSWVRAYAT 631 (708)
T ss_pred Hhhcchhhcc-----chhhhhhhcCccccc------ccchhhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhh
Confidence 3322221111 001112222211111 11123455677889999999999988888888888999999998
Q ss_pred HHH--HHHH
Q psy17587 222 RVD--QRIA 228 (231)
Q Consensus 222 ~~~--~~i~ 228 (231)
|.. ..||
T Consensus 632 h~~elk~iF 640 (708)
T KOG0348|consen 632 HPSELKSIF 640 (708)
T ss_pred Chhhhccce
Confidence 864 4555
No 12
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.96 E-value=2e-28 Score=225.36 Aligned_cols=149 Identities=28% Similarity=0.471 Sum_probs=134.2
Q ss_pred chhhhhccccccCC-CCeEEEEcCChhHHHHHHHHHHHHH-CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 6 PCLSLHGGIDQYDR-DSTIVDFKNGKVRLLVCAIVKELMK-AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 6 k~~~L~~~L~~~~~-~~~iiiF~~~~~~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
|...|.+.|..... ..++||||+++ ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~--~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~ 429 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSR--LGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLG 429 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCc--hhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhh
Confidence 44556666654432 45788899998 779999999975 589999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHH
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMW 156 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 156 (231)
||+|+|+|++|||||+|.++.+|+||+||+||.|..|.+++|+++++...+.++.+.++..++.+|+++.+..
T Consensus 430 rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 430 RGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred ccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877543
No 13
>KOG0340|consensus
Probab=99.96 E-value=1.2e-28 Score=208.93 Aligned_cols=140 Identities=31% Similarity=0.441 Sum_probs=128.9
Q ss_pred hhhhccccccCC--CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 8 LSLHGGIDQYDR--DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 8 ~~L~~~L~~~~~--~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
..|+.+|..+.. ++.++||+|+. ..|..|+..|...++.+.++||.|++.+|...+.+|+++..+||||||+++||
T Consensus 240 aYLv~~Lr~~~~~~~~simIFvntt--r~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRG 317 (442)
T KOG0340|consen 240 AYLVHLLRDFENKENGSIMIFVNTT--RECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRG 317 (442)
T ss_pred HHHHHHHhhhhhccCceEEEEeehh--HHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcC
Confidence 456777776665 78899999987 67999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCc
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIP 149 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 149 (231)
+|||.|+.|||||+|.+|.+|+||+||++|+|+.|.+++|++..|.+.+..+++...++..+.+
T Consensus 318 LDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 318 LDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred CCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999988888888877665544
No 14
>KOG0335|consensus
Probab=99.96 E-value=1.6e-28 Score=217.46 Aligned_cols=152 Identities=36% Similarity=0.561 Sum_probs=140.0
Q ss_pred CchhhhhccccccC---CCC-----eEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEE
Q psy17587 5 YPCLSLHGGIDQYD---RDS-----TIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLL 76 (231)
Q Consensus 5 ~k~~~L~~~L~~~~---~~~-----~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 76 (231)
+|...|+++|.... ... +++|||.++ +.+++++..|...++++..+||.-++.+|.+++..|++|++.+|
T Consensus 314 ~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~--~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 314 EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETK--RGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred hhHHHHHHHhhcccCCcccCCcccceEEEEeecc--chhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 56667777776444 333 788899998 77999999999999999999999999999999999999999999
Q ss_pred EecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHH
Q psy17587 77 IATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMW 156 (231)
Q Consensus 77 vaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 156 (231)
|||++++||+|+|+|.+|||||+|.+..+|+||+|||||.|+.|.++.|+...+....+.+.+.+...++.+|+++.++.
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~~~ 471 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSELS 471 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999855
Q ss_pred hh
Q psy17587 157 AE 158 (231)
Q Consensus 157 ~~ 158 (231)
.+
T Consensus 472 ~~ 473 (482)
T KOG0335|consen 472 RE 473 (482)
T ss_pred hh
Confidence 43
No 15
>KOG0326|consensus
Probab=99.95 E-value=7.7e-29 Score=207.89 Aligned_cols=148 Identities=32% Similarity=0.574 Sum_probs=137.1
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
..+|+.+|-.+..+..-++.|| |||+. ..++.|++.+...|+++.++|+.|.++.|..++.+|++|.++.|||||.+
T Consensus 306 e~qKvhCLntLfskLqINQsII-FCNS~--~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~ 382 (459)
T KOG0326|consen 306 ERQKVHCLNTLFSKLQINQSII-FCNST--NRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLF 382 (459)
T ss_pred hhhhhhhHHHHHHHhcccceEE-Eeccc--hHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhh
Confidence 4678888888877776666666 99998 44999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHH
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLD 153 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 153 (231)
-||+|+++|++|||||+|.+.++|+||+||.||-|-.|.+|.+++-+|...+..+++.+.....++|..++
T Consensus 383 TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 383 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred hcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987644
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=4.6e-28 Score=218.01 Aligned_cols=138 Identities=33% Similarity=0.406 Sum_probs=123.7
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.|...|..++... ...++||||+++ ..++.+++.|...|+++..+||+|++.+|..++++|++|+++||||||+++|
T Consensus 241 ~k~~~l~~ll~~~-~~~~~lVF~~t~--~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~r 317 (423)
T PRK04837 241 EKMRLLQTLIEEE-WPDRAIIFANTK--HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAAR 317 (423)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEECCH--HHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhc
Confidence 3555666666544 356788899998 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCC
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASG 145 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~ 145 (231)
|+|+|+|++|||||+|.++.+|+||+||+||.|+.|.|++|+++.+...+..+.+.+....
T Consensus 318 GiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 318 GLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred CCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999998888877777665443
No 17
>KOG0343|consensus
Probab=99.95 E-value=1.1e-27 Score=212.77 Aligned_cols=192 Identities=28% Similarity=0.379 Sum_probs=152.1
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHH--HCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELM--KAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~--~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
-+.|+..|..+|+.+...+.|| |.++. .++..+++.+. ..|+++.++||+|++..|..++.+|-...--||+|||
T Consensus 297 l~~Ki~~L~sFI~shlk~K~iV-F~Ssc--Kqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD 373 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSHLKKKSIV-FLSSC--KQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD 373 (758)
T ss_pred hhhHHHHHHHHHHhccccceEE-EEehh--hHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeeh
Confidence 3578899999999876666666 55544 46788887775 4589999999999999999999999999999999999
Q ss_pred ccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHHhhch
Q psy17587 81 VAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWAEDL 160 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 160 (231)
+++||+|+|.|+|||++|+|.++++|+||+||++|.+..|.++++++|.+++. ++..+.....++.+. .+
T Consensus 374 v~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~---~l~~Lq~k~I~i~~i--~i----- 443 (758)
T KOG0343|consen 374 VAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA---MLKKLQKKKIPIKEI--KI----- 443 (758)
T ss_pred hhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH---HHHHHHHcCCCHHhh--cc-----
Confidence 99999999999999999999999999999999999999999999999998653 445554444322221 00
Q ss_pred hhhhccccCCCCCcccchhhHHhhhcHHHHHHHHHhcCCCCcHHHHHHHHhhHHHHHhHHHHHHHHHHh
Q psy17587 161 IVRTFCFRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKILAEGLVWLRDYKQRVDQRIAR 229 (231)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~s~~r~y~~~~~~~i~~ 229 (231)
......++...|....+++++.-....+++++|+|+--....+++|.
T Consensus 444 ----------------------~~~k~~~i~~~l~~ll~~~~eLk~~aqka~isY~rsi~~~rdK~~f~ 490 (758)
T KOG0343|consen 444 ----------------------DPEKLTSIRNKLEALLAKDPELKEYAQKAFISYLRSIYLMRDKRVFD 490 (758)
T ss_pred ----------------------CHHHhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhhccchhhc
Confidence 01112345566777777888888888888899999877766666664
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=7.2e-27 Score=212.14 Aligned_cols=126 Identities=37% Similarity=0.584 Sum_probs=117.6
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN 96 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~ 96 (231)
.....++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+|++|||
T Consensus 242 ~~~~~~~lVF~~t~--~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 242 KGNWQQVLVFTRTK--HGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred cCCCCcEEEEcCcH--HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 34456788899998 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhC
Q psy17587 97 YDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEAS 144 (231)
Q Consensus 97 ~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~ 144 (231)
||+|.++.+|+||+||+||.|..|.+++|++..+...++.+++.+...
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred eCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999988888888776544
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=8.1e-27 Score=212.00 Aligned_cols=135 Identities=38% Similarity=0.538 Sum_probs=122.4
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
|...|..+|.... ..++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 229 k~~~l~~ll~~~~-~~~~lVF~~t~--~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rG 305 (460)
T PRK11776 229 RLPALQRLLLHHQ-PESCVVFCNTK--KECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARG 305 (460)
T ss_pred HHHHHHHHHHhcC-CCceEEEECCH--HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 5556666665544 45677799998 77999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHh
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEA 143 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~ 143 (231)
+|+|++++|||||+|.++++|+||+||+||.|..|.|++|+.+.+...+..+.+.+..
T Consensus 306 iDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 306 LDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred cchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999988877777776654
No 20
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.5e-26 Score=210.70 Aligned_cols=132 Identities=17% Similarity=0.275 Sum_probs=119.2
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
.+..+..+|....++++.||||+++ ..++.++..|...|+.+..+||+|++++|..+++.|++|+++|||||+++++|
T Consensus 212 ~~~~l~~~l~~~~~~~~~IIF~~s~--~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~G 289 (470)
T TIGR00614 212 ILEDLLRFIRKEFKGKSGIIYCPSR--KKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMG 289 (470)
T ss_pred HHHHHHHHHHHhcCCCceEEEECcH--HHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhcc
Confidence 3445666666555677778899988 77999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHH
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIR 139 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~ 139 (231)
+|+|+|++||||++|.++++|+||+||+||.|..|.|++|+++.+...++.++.
T Consensus 290 ID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 290 INKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988776555543
No 21
>KOG0332|consensus
Probab=99.94 E-value=1.8e-26 Score=196.97 Aligned_cols=139 Identities=32% Similarity=0.492 Sum_probs=119.7
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
+..|...|.++--...-++.|| ||.++ .++..|+..|...|+.|.++||.|+-.+|..++.+|+.|+..|||+|+++
T Consensus 314 ~~~K~~~l~~lyg~~tigqsiI-Fc~tk--~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ 390 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLLTIGQSII-FCHTK--ATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVC 390 (477)
T ss_pred hhhHHHHHHHHHhhhhhhheEE-EEeeh--hhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechh
Confidence 4566666666333333345555 99998 78999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEEecCCC------CHhHHHHHhcccCCCCCceeEEEEecccc-hHHHHHHHHHHHhC
Q psy17587 83 ARGLDVKHLNLVVNYDCPN------HYEDYVHRCGRTGRAGNKGFAYTFITLEQ-ERHAGEIIRALEAS 144 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~------~~~~y~qr~GR~gR~g~~g~~i~~~~~~~-~~~~~~~~~~l~~~ 144 (231)
+||+|++.|++|||||+|. +++.|+||+||+||-|+.|.++.|+..++ ...+..+.+++...
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 9999999999999999996 69999999999999999999999998774 55666777777543
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=2.8e-26 Score=207.04 Aligned_cols=135 Identities=34% Similarity=0.523 Sum_probs=121.2
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
|...|..+++. ....++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 232 k~~~l~~l~~~-~~~~~~lVF~~s~--~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~G 308 (434)
T PRK11192 232 KTALLCHLLKQ-PEVTRSIVFVRTR--ERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARG 308 (434)
T ss_pred HHHHHHHHHhc-CCCCeEEEEeCCh--HHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Confidence 44455555543 3457788899988 77999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHh
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEA 143 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~ 143 (231)
+|+|+|++|||||+|.+...|+||+||+||.|..|.+++|+...+...+..+.+++..
T Consensus 309 iDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 309 IDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred ccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999888888777766643
No 23
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1.7e-26 Score=214.47 Aligned_cols=137 Identities=34% Similarity=0.484 Sum_probs=122.8
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.|+..|..++... .+.++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 243 ~k~~~L~~ll~~~-~~~k~LVF~nt~--~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~ar 319 (572)
T PRK04537 243 EKQTLLLGLLSRS-EGARTMVFVNTK--AFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAAR 319 (572)
T ss_pred HHHHHHHHHHhcc-cCCcEEEEeCCH--HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhc
Confidence 3455566666543 456778899998 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhC
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEAS 144 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~ 144 (231)
|||+|+|++|||||+|.++++|+||+||+||.|..|.|++|+++.+...+.++.+.+..+
T Consensus 320 GIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 320 GLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred CCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999998888778887776543
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=3.7e-26 Score=213.83 Aligned_cols=138 Identities=37% Similarity=0.538 Sum_probs=123.8
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
+|...|..+|.... ...+||||+++ ..++.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 231 ~k~~~L~~~L~~~~-~~~~IVF~~tk--~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~ar 307 (629)
T PRK11634 231 RKNEALVRFLEAED-FDAAIIFVRTK--NATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307 (629)
T ss_pred hHHHHHHHHHHhcC-CCCEEEEeccH--HHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhc
Confidence 46667777776554 45677799998 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCC
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASG 145 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~ 145 (231)
|||+|+|++|||||+|.++++|+||+|||||.|+.|.+++|+.+.+...++.+.+.+....
T Consensus 308 GIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i 368 (629)
T PRK11634 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 (629)
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999988887777777665443
No 25
>KOG0334|consensus
Probab=99.94 E-value=4.7e-26 Score=214.49 Aligned_cols=174 Identities=49% Similarity=0.684 Sum_probs=155.0
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
..|...|+++|..+..+.++||||.+. ..|+.+.+.|++.|+.+..+||+.++.+|..+++.|+++.+++||||++++
T Consensus 597 ~eKf~kL~eLl~e~~e~~~tiiFv~~q--e~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvva 674 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYEDGKTIIFVDKQ--EKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVA 674 (997)
T ss_pred hHHHHHHHHHHHHHhhcCCEEEEEcCc--hHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhh
Confidence 356788888888777788888899988 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHHhh-----
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWAE----- 158 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~----- 158 (231)
||+|++++.+|||||+|.+..+|+||+||+||+|+.|.|++|+.+.+....-++.+.+...++++|..+..++..
T Consensus 675 rGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~~ 754 (997)
T KOG0334|consen 675 RGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERFKAKQ 754 (997)
T ss_pred cccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999988899999999999999999888877652
Q ss_pred --chhhhhccccCCCCCcccchh
Q psy17587 159 --DLIVRTFCFRAGNKGFAYTFI 179 (231)
Q Consensus 159 --~~~~~~~~~~~~~~~~~~~~~ 179 (231)
+.......++++|+|+++.+.
T Consensus 755 ~~~~s~~~~~Gg~~G~g~~~~~~ 777 (997)
T KOG0334|consen 755 KAGGSQVHGGGGFGGKGLKFDEV 777 (997)
T ss_pred hcccccccccCcccCCcccccHH
Confidence 112222233688999998764
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=9.3e-26 Score=205.86 Aligned_cols=137 Identities=34% Similarity=0.485 Sum_probs=122.7
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
|...|..++.. ....++||||+++ ..++.+++.|...++.+..+||+|++++|.++++.|++|+++|||||+++++|
T Consensus 322 k~~~l~~ll~~-~~~~~~IVF~~s~--~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~G 398 (475)
T PRK01297 322 KYKLLYNLVTQ-NPWERVMVFANRK--DEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRG 398 (475)
T ss_pred HHHHHHHHHHh-cCCCeEEEEeCCH--HHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Confidence 33445555543 3456788899988 77999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCC
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASG 145 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~ 145 (231)
+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+...|...+..+.+.+..+.
T Consensus 399 IDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 399 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred CcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999988888888888776654
No 27
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.93 E-value=4.7e-26 Score=218.96 Aligned_cols=129 Identities=17% Similarity=0.306 Sum_probs=115.1
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccC
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLD 87 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gld 87 (231)
..+..++.....+...||||+++ ..++.+++.|...|+++..+||+|++++|..++++|.+|+++|||||+++++|||
T Consensus 668 e~L~~~I~~~~~~esgIIYC~SR--ke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGID 745 (1195)
T PLN03137 668 EDIDKFIKENHFDECGIIYCLSR--MDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGIN 745 (1195)
T ss_pred HHHHHHHHhcccCCCceeEeCch--hHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCC
Confidence 44555665544456677799988 7799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHH
Q psy17587 88 VKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEII 138 (231)
Q Consensus 88 ip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~ 138 (231)
+|+|++|||||+|.+++.|+||+|||||.|..|.|++|+...|....+.++
T Consensus 746 kPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 746 KPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred ccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887765444443
No 28
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=7.2e-26 Score=202.05 Aligned_cols=142 Identities=32% Similarity=0.538 Sum_probs=124.0
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
+...+...+... ...++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 254 ~~~~l~~~~~~~-~~~~~ivF~~t~--~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~G 330 (401)
T PTZ00424 254 KFDTLCDLYETL-TITQAIIYCNTR--RKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARG 330 (401)
T ss_pred HHHHHHHHHHhc-CCCeEEEEecCc--HHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCC
Confidence 444444444433 345678899998 77999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCch
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPE 150 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 150 (231)
+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.+...+..+.+.+.....+.++
T Consensus 331 iDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 331 IDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred cCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 99999999999999999999999999999999999999999999888888887777655554443
No 29
>KOG0338|consensus
Probab=99.93 E-value=1.1e-25 Score=198.53 Aligned_cols=131 Identities=32% Similarity=0.449 Sum_probs=117.4
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccC
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLD 87 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gld 87 (231)
..|..++.+.. ..+++||+.++ .++..|.=.|-..|+++.-+||.|+|++|...++.|++++++||||||+++||||
T Consensus 415 a~l~~l~~rtf-~~~~ivFv~tK--k~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLD 491 (691)
T KOG0338|consen 415 AMLASLITRTF-QDRTIVFVRTK--KQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLD 491 (691)
T ss_pred HHHHHHHHHhc-ccceEEEEehH--HHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCC
Confidence 34555556555 45556699988 7788887777778999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHH
Q psy17587 88 VKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRAL 141 (231)
Q Consensus 88 ip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l 141 (231)
|+.|.+||||++|.+...|+||+||++|+|+.|.+++|+...+...++.+++..
T Consensus 492 I~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 492 IEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred ccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999888888764
No 30
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.93 E-value=3.7e-25 Score=207.06 Aligned_cols=128 Identities=21% Similarity=0.322 Sum_probs=114.5
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccccc
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGL 86 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gl 86 (231)
+..|...+... .+++.||||+++ ..++.+++.|...|+++..+||+|++++|..+++.|++|+++|||||+++++|+
T Consensus 224 ~~~l~~~l~~~-~~~~~IIFc~tr--~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GI 300 (607)
T PRK11057 224 LDQLMRYVQEQ-RGKSGIIYCNSR--AKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGI 300 (607)
T ss_pred HHHHHHHHHhc-CCCCEEEEECcH--HHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccC
Confidence 34455555443 456777799988 779999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHH
Q psy17587 87 DVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEI 137 (231)
Q Consensus 87 dip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~ 137 (231)
|+|+|++|||||+|.+.++|+||+||+||.|..|.|++|+.+.+...++.+
T Consensus 301 Dip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876554433
No 31
>KOG0344|consensus
Probab=99.93 E-value=3.8e-25 Score=197.85 Aligned_cols=152 Identities=34% Similarity=0.472 Sum_probs=139.0
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHH-HHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKEL-MKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
.+.|++++.+.+..- -...++||+.++ +.+.+|...| .-.++.+.++||..++.+|..++++|+.|+++||+||++
T Consensus 371 e~~K~lA~rq~v~~g-~~PP~lIfVQs~--eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdl 447 (593)
T KOG0344|consen 371 EKGKLLALRQLVASG-FKPPVLIFVQSK--ERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDL 447 (593)
T ss_pred chhHHHHHHHHHhcc-CCCCeEEEEecH--HHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhh
Confidence 355777787777654 467778899998 6699999999 677899999999999999999999999999999999999
Q ss_pred cccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHHh
Q psy17587 82 AARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWA 157 (231)
Q Consensus 82 ~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 157 (231)
++||+|+.+|++|||||+|.+..+|+||+||+||+|+.|.||+|++..+....+.+.+.+...+.++|+++..+..
T Consensus 448 l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 448 LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGIKK 523 (593)
T ss_pred hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998776643
No 32
>KOG0347|consensus
Probab=99.92 E-value=6.3e-25 Score=195.10 Aligned_cols=133 Identities=30% Similarity=0.392 Sum_probs=121.0
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCC
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDV 88 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldi 88 (231)
.|+=+|.+| .++.+||||++ +-+..|+-.|...++....+|+.|.+.+|.+++++|++....||+||||++||+||
T Consensus 454 ylyYfl~ry--PGrTlVF~NsI--d~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDI 529 (731)
T KOG0347|consen 454 YLYYFLTRY--PGRTLVFCNSI--DCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDI 529 (731)
T ss_pred eEEEEEeec--CCceEEEechH--HHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCC
Confidence 344455555 35555699998 66999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCC
Q psy17587 89 KHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASG 145 (231)
Q Consensus 89 p~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~ 145 (231)
|.|.+||||.+|.+.+-|+||.||++|++..|..++++.|.+...++++.+.|+...
T Consensus 530 p~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 530 PGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred CCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999988888888887654
No 33
>KOG0339|consensus
Probab=99.92 E-value=5.8e-25 Score=193.84 Aligned_cols=158 Identities=33% Similarity=0.517 Sum_probs=147.2
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
..|+.-|+..|.......++|+|+..+ ..++.++..|...++++..+||+|.+.+|.+++.+|+.+...|||+||+++
T Consensus 452 ~~Kl~wl~~~L~~f~S~gkvlifVTKk--~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaa 529 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEGKVLIFVTKK--ADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAA 529 (731)
T ss_pred HHHHHHHHHHhhhhccCCcEEEEEecc--CCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhh
Confidence 457778888888888888999999988 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHHhhchhhh
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWAEDLIVR 163 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 163 (231)
||+|+|++..|||||+..+++.|.||+||+||.|..|.+++++++.+....-.+++.|+..++.+|..|.++.-....++
T Consensus 530 rgldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr 609 (731)
T KOG0339|consen 530 RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFR 609 (731)
T ss_pred cCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876544443
No 34
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=2.2e-24 Score=201.61 Aligned_cols=128 Identities=21% Similarity=0.331 Sum_probs=115.0
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
+...+.+.|.... +.+.||||+++ ..++.+++.|...|+++..+||+|++++|..+++.|.+|+++|||||+++++|
T Consensus 211 ~~~~l~~~l~~~~-~~~~IIf~~sr--~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~G 287 (591)
T TIGR01389 211 KQKFLLDYLKKHR-GQSGIIYASSR--KKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMG 287 (591)
T ss_pred HHHHHHHHHHhcC-CCCEEEEECcH--HHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhcc
Confidence 4455667776544 56677799988 77999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHH
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGE 136 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~ 136 (231)
+|+|+|++||+|++|.++++|+|++||+||.|..+.|++++.+.+....+.
T Consensus 288 ID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~ 338 (591)
T TIGR01389 288 IDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKR 338 (591)
T ss_pred CcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHH
Confidence 999999999999999999999999999999999999999998877654443
No 35
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=7.8e-24 Score=193.34 Aligned_cols=122 Identities=23% Similarity=0.359 Sum_probs=112.0
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN 96 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~ 96 (231)
....+.-||||.++ ..++.+++.|...|+++..+||||+.++|..+.++|..+++.|+|||.++++|||.|+|++|||
T Consensus 227 ~~~~~~GIIYc~sR--k~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH 304 (590)
T COG0514 227 PQLSKSGIIYCLTR--KKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH 304 (590)
T ss_pred cccCCCeEEEEeeH--HhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE
Confidence 33455566699988 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHH
Q psy17587 97 YDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRA 140 (231)
Q Consensus 97 ~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~ 140 (231)
||+|.++++|+|.+|||||.|.+..|++|+.+.|....+.+++.
T Consensus 305 ~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 305 YDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred ecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999997755555443
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=6.5e-24 Score=202.14 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=108.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC--------CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA--------GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHL 91 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v 91 (231)
+.++||||+++ ..++.++..|... +.++..+||+|++++|.+++++|++|++++|||||++++|||+|++
T Consensus 271 ~~~~IVF~~sr--~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~v 348 (742)
T TIGR03817 271 GARTLTFVRSR--RGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGL 348 (742)
T ss_pred CCCEEEEcCCH--HHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccc
Confidence 46788899988 7799999988653 5688999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecc--cchHHHHHHHHHHHhC
Q psy17587 92 NLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITL--EQERHAGEIIRALEAS 144 (231)
Q Consensus 92 ~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~--~~~~~~~~~~~~l~~~ 144 (231)
++|||||+|.+.++|+||+||+||.|+.|.++++... .|...+....+.++.+
T Consensus 349 d~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~ 403 (742)
T TIGR03817 349 DAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRP 403 (742)
T ss_pred cEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCC
Confidence 9999999999999999999999999999999999873 4555555555555443
No 37
>KOG0327|consensus
Probab=99.90 E-value=6.6e-24 Score=181.86 Aligned_cols=144 Identities=34% Similarity=0.563 Sum_probs=130.5
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.|+.+|.++.+ .....++|||++ ..++.+...|...++.+.++||.|.+.+|..++..|++|..+|||+|+.++|
T Consensus 251 ~k~~~l~dl~~---~~~q~~if~nt~--r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~ar 325 (397)
T KOG0327|consen 251 EKLDTLCDLYR---RVTQAVIFCNTR--RKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLAR 325 (397)
T ss_pred ccccHHHHHHH---hhhcceEEecch--hhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccccc
Confidence 46667776666 345556699988 6799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHH
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLD 153 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 153 (231)
|+|+.+++.|||||+|.+.++|+||+||+||.|.+|.++.|++..+...++++++++.....++|....
T Consensus 326 gidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred ccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchh
Confidence 999999999999999999999999999999999999999999999999999999988777777776543
No 38
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.89 E-value=1.3e-22 Score=195.57 Aligned_cols=137 Identities=15% Similarity=0.202 Sum_probs=115.9
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHH-HCCCCeeeccCCCCHHHHHHHHHHHhCC--CccEEEecC
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELM-KAGYPCLSLHGGIDQYDRDSTIVDFKNG--KVRLLIATS 80 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLvaT~ 80 (231)
+-|+..|.++|+... +.++||||+++ .+++.|.+.|+ ..|+++..+||+|++.+|.++++.|+++ ..+|||||+
T Consensus 478 d~Ki~~L~~~L~~~~-~~KvLVF~~~~--~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 478 DPRVEWLIDFLKSHR-SEKVLVICAKA--ATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred CHHHHHHHHHHHhcC-CCeEEEEeCcH--HHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 346777888887654 67888899988 77999999994 6699999999999999999999999974 699999999
Q ss_pred ccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHh
Q psy17587 81 VAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEA 143 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~ 143 (231)
++++|+|++.+++|||||+||+++.|.||+||++|.|+++.+.+++...+......+.+.+..
T Consensus 555 vgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred hhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998887666654444444444444443
No 39
>KOG0350|consensus
Probab=99.88 E-value=8.6e-23 Score=179.86 Aligned_cols=137 Identities=26% Similarity=0.448 Sum_probs=120.5
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHH----HCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELM----KAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
-+.|...++.+|..+. ..++|+|+++. +.+..++.-|. ..++++..+.|+++...|.+.+.+|..|+++||||
T Consensus 413 ~~~kpl~~~~lI~~~k-~~r~lcf~~S~--~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIc 489 (620)
T KOG0350|consen 413 PKFKPLAVYALITSNK-LNRTLCFVNSV--SSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLIC 489 (620)
T ss_pred cccchHhHHHHHHHhh-cceEEEEecch--HHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEe
Confidence 3567788888887765 55666699987 66888888775 45788889999999999999999999999999999
Q ss_pred cCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHH
Q psy17587 79 TSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALE 142 (231)
Q Consensus 79 T~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~ 142 (231)
||+++||+|+-+|+.|||||+|.+...|+||+||++|+|+.|.|++++...+...+.++++...
T Consensus 490 SD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 490 SDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred hhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999998887766666443
No 40
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.86 E-value=2.6e-20 Score=176.46 Aligned_cols=126 Identities=19% Similarity=0.251 Sum_probs=102.7
Q ss_pred CCCCeEEEEcCChh------HHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCC
Q psy17587 18 DRDSTIVDFKNGKV------RLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVK 89 (231)
Q Consensus 18 ~~~~~iiiF~~~~~------~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip 89 (231)
..+.+++|||+... ...++.+++.|... ++++..+||+|++++|..++++|++|+++|||||+++++|+|+|
T Consensus 469 ~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip 548 (681)
T PRK10917 469 AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVP 548 (681)
T ss_pred HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccC
Confidence 45678888998531 13456777777654 57899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC-CHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHh
Q psy17587 90 HLNLVVNYDCPN-HYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEA 143 (231)
Q Consensus 90 ~v~~VI~~d~P~-~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~ 143 (231)
++++||++++|. ..+.|.||+||+||.|..|.|+++..........+..+.+..
T Consensus 549 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 549 NATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred CCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 999999999997 578889999999999999999999964432223334444443
No 41
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.86 E-value=3.8e-21 Score=170.19 Aligned_cols=122 Identities=28% Similarity=0.368 Sum_probs=106.9
Q ss_pred chhhhhccccccC---CCCeEEEEcCChhHHHHHHHHHHHHHCCCCee-ecc--------CCCCHHHHHHHHHHHhCCCc
Q psy17587 6 PCLSLHGGIDQYD---RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL-SLH--------GGIDQYDRDSTIVDFKNGKV 73 (231)
Q Consensus 6 k~~~L~~~L~~~~---~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~-~lh--------g~~~~~~R~~~~~~F~~g~~ 73 (231)
|+..+.+++++.. ++.++|||++-+ ++++.+.++|.+.+..+. .+- .||+|.++.+++++|++|++
T Consensus 349 Kl~~l~eilke~~~k~~~~RvIVFT~yR--dTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~ 426 (542)
T COG1111 349 KLEKLREILKEQLEKNGDSRVIVFTEYR--DTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEY 426 (542)
T ss_pred cHHHHHHHHHHHHhcCCCceEEEEehhH--hHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCc
Confidence 4666666665443 468999999966 889999999999887774 222 47999999999999999999
Q ss_pred cEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccc
Q psy17587 74 RLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQ 130 (231)
Q Consensus 74 ~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~ 130 (231)
+|||||+++++|||+|+|++||.|++-.+...++||.|||||. +.|.++++++.+.
T Consensus 427 nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 427 NVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred eEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 9999999999999999999999999999999999999999996 7899999998873
No 42
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.85 E-value=2.6e-21 Score=133.93 Aligned_cols=78 Identities=37% Similarity=0.664 Sum_probs=75.5
Q ss_pred HHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCC
Q psy17587 40 KELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAG 117 (231)
Q Consensus 40 ~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g 117 (231)
+.|...++.+..+||++++.+|..+++.|++++.+|||||+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999999986
No 43
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.85 E-value=5.7e-21 Score=143.75 Aligned_cols=119 Identities=32% Similarity=0.520 Sum_probs=107.8
Q ss_pred CchhhhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 5 YPCLSLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 5 ~k~~~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.|...+...+.+.. .++++||||++. ..++.+.+.|...+..+..+||++++.+|..+++.|.++...+|++|++++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSK--KMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcH--HHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhh
Confidence 45666777776554 577889999988 779999999998889999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEE
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTF 125 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~ 125 (231)
+|+|+|.+++||.+++|++..+|.|++||++|.|+.|.++++
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999988887653
No 44
>KOG0346|consensus
Probab=99.85 E-value=2.5e-21 Score=168.46 Aligned_cols=137 Identities=26% Similarity=0.334 Sum_probs=119.4
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC---
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS--- 80 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~--- 80 (231)
..|.+-++-+++-.--.+++|||+|+. +.|..|--.|...|++.+.+.|.||..-|..++++|..|-++++||||
T Consensus 252 ~DKflllyallKL~LI~gKsliFVNtI--dr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~ 329 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRLIRGKSLIFVNTI--DRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSA 329 (569)
T ss_pred chhHHHHHHHHHHHHhcCceEEEEech--hhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCcc
Confidence 345556666665555567888899998 559999999999999999999999999999999999999999999998
Q ss_pred --------------------------------ccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecc
Q psy17587 81 --------------------------------VAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITL 128 (231)
Q Consensus 81 --------------------------------~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~ 128 (231)
-++||||+.+|..|+|||+|.++.+|+||+||++|++++|.+++|+.|
T Consensus 330 ~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 330 DGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred chhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecc
Confidence 257999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHH
Q psy17587 129 EQERHAGEIIRALE 142 (231)
Q Consensus 129 ~~~~~~~~~~~~l~ 142 (231)
.+......++..+.
T Consensus 410 ~e~~g~~~le~~~~ 423 (569)
T KOG0346|consen 410 KEEFGKESLESILK 423 (569)
T ss_pred hHHhhhhHHHHHHh
Confidence 98775555555444
No 45
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=5.9e-21 Score=177.25 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=105.4
Q ss_pred CchhhhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 5 YPCLSLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 5 ~k~~~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.|...|.+.+.... .++.+||||+++ ..++.+++.|...|+++..+||++++.+ ..+..|+.++..|+||||+++
T Consensus 457 ~K~~aL~~~i~~~~~~~~pvLIft~t~--~~se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAg 532 (656)
T PRK12898 457 AKWAAVAARVRELHAQGRPVLVGTRSV--AASERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAG 532 (656)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcH--HHHHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchh
Confidence 46677777776643 357799999998 7799999999999999999999976544 455556666667999999999
Q ss_pred cccCCC---CCc-----EEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 84 RGLDVK---HLN-----LVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 84 ~Gldip---~v~-----~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
||+||+ +|. +||+||+|.+...|.||+||+||.|.+|.+++|++.+|.
T Consensus 533 RGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 533 RGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred cccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999 676 999999999999999999999999999999999998654
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.84 E-value=1.8e-20 Score=181.11 Aligned_cols=111 Identities=17% Similarity=0.328 Sum_probs=101.9
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEE
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLV 94 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~V 94 (231)
...+.+++||||+. +.++.+++.|... ++++..+||+|++.+|.+++++|++|+++|||||+++++|+|+|++++|
T Consensus 657 l~~g~qv~if~n~i--~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~V 734 (926)
T TIGR00580 657 LLRGGQVFYVHNRI--ESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTI 734 (926)
T ss_pred HHcCCeEEEEECCc--HHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEE
Confidence 33567888899988 7799999999874 7899999999999999999999999999999999999999999999999
Q ss_pred EEecCCC-CHhHHHHHhcccCCCCCceeEEEEeccc
Q psy17587 95 VNYDCPN-HYEDYVHRCGRTGRAGNKGFAYTFITLE 129 (231)
Q Consensus 95 I~~d~P~-~~~~y~qr~GR~gR~g~~g~~i~~~~~~ 129 (231)
|+++.|. +..+|+||+||+||.|+.|.|++++.+.
T Consensus 735 Ii~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 735 IIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999975 6789999999999999999999998654
No 47
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=6.4e-21 Score=180.31 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=111.5
Q ss_pred CCchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 4 GYPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 4 ~~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
+.|...|.+.+... ..++.+||||+++ ..++.++..|...|+++..+||+++++++..+...++.| +|+|||+++
T Consensus 411 ~~K~~al~~~i~~~~~~~~pvLIf~~t~--~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmA 486 (790)
T PRK09200 411 DEKYKAVIEEVKERHETGRPVLIGTGSI--EQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMA 486 (790)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH--HHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccch
Confidence 45677788877653 4578899999998 779999999999999999999999999988888888766 799999999
Q ss_pred ccccCC---CCCc-----EEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 83 ARGLDV---KHLN-----LVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 83 ~~Gldi---p~v~-----~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
+||+|+ |+|. +||+||+|.+...|.||+||+||.|.+|.+++|++.+|.
T Consensus 487 gRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 487 GRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred hcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 999999 7998 999999999999999999999999999999999987654
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.84 E-value=4.1e-20 Score=173.86 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=105.8
Q ss_pred hhhcccccc-CCCCeEEEEcCChh------HHHHHHHHHHHHH--CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEec
Q psy17587 9 SLHGGIDQY-DRDSTIVDFKNGKV------RLLVCAIVKELMK--AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIAT 79 (231)
Q Consensus 9 ~L~~~L~~~-~~~~~iiiF~~~~~------~~~~~~l~~~L~~--~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT 79 (231)
.+++.+.+. ..+..++|||+... ...++.+++.|.. .++.+..+||+|++++|..++++|++|+.+|||||
T Consensus 436 ~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT 515 (630)
T TIGR00643 436 IVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVAT 515 (630)
T ss_pred HHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 344444332 45677888997531 1346677777764 37889999999999999999999999999999999
Q ss_pred CccccccCCCCCcEEEEecCCC-CHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHh
Q psy17587 80 SVAARGLDVKHLNLVVNYDCPN-HYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEA 143 (231)
Q Consensus 80 ~~~~~Gldip~v~~VI~~d~P~-~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~ 143 (231)
+++++|+|+|++++||+++.|. +.+.|.||+||+||.|..|.|+++..........+..+.+..
T Consensus 516 ~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~ 580 (630)
T TIGR00643 516 TVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMAD 580 (630)
T ss_pred ceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHh
Confidence 9999999999999999999997 678889999999999999999999843333333333444443
No 49
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=3.4e-20 Score=174.60 Aligned_cols=146 Identities=20% Similarity=0.271 Sum_probs=126.0
Q ss_pred chhhhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 6 PCLSLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 6 k~~~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
++..|++.|.... .+.++||||+++ ..++.|++.|...|+++..+||++++.+|..++..|+.|++.|+|||+++++
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~--~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTK--RMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCH--HHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 4556667775543 478899999988 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecC-----CCCHhHHHHHhcccCCCCCceeEEEEecc---------cchHHHHHHHHHHHhCCCCCch
Q psy17587 85 GLDVKHLNLVVNYDC-----PNHYEDYVHRCGRTGRAGNKGFAYTFITL---------EQERHAGEIIRALEASGVPIPE 150 (231)
Q Consensus 85 Gldip~v~~VI~~d~-----P~~~~~y~qr~GR~gR~g~~g~~i~~~~~---------~~~~~~~~~~~~l~~~~~~~~~ 150 (231)
|+|+|++++||++|. |.+..+|+||+||+||. ..|.+++|+.. .+....+++...++.+...+|.
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 999999999999885 78999999999999996 68999999984 3555666677777777777887
Q ss_pred hHHH
Q psy17587 151 DLDK 154 (231)
Q Consensus 151 ~l~~ 154 (231)
.+.+
T Consensus 588 ~~~~ 591 (652)
T PRK05298 588 TIKK 591 (652)
T ss_pred hHHH
Confidence 6543
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.84 E-value=1.9e-20 Score=181.40 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=94.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC------CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA------GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNL 93 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~ 93 (231)
.+++|||||++ ..++.++..|... +..+.++||+|++++|..+++.|++|+++|||||+++++|||+|++++
T Consensus 284 ~~~~LVF~nTr--~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 284 HRTTLIFTNTR--SGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDL 361 (876)
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcE
Confidence 56788899988 7799999999762 467999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHhHHHHHhcccCCCC-CceeEEEEecc
Q psy17587 94 VVNYDCPNHYEDYVHRCGRTGRAG-NKGFAYTFITL 128 (231)
Q Consensus 94 VI~~d~P~~~~~y~qr~GR~gR~g-~~g~~i~~~~~ 128 (231)
||+++.|.++.+|+||+||+||.+ ..+.++++...
T Consensus 362 VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred EEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999864 33444444443
No 51
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.83 E-value=4.2e-20 Score=173.40 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=113.9
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.++..|++.|+.. ..+.+++|||+++ ..++.|++.|...|+++..+||++++.+|.+++..|+.|++.|||||++++
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk--~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTK--KMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 3556677777654 4478899999998 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEec-----CCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHH
Q psy17587 84 RGLDVKHLNLVVNYD-----CPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAG 135 (231)
Q Consensus 84 ~Gldip~v~~VI~~d-----~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~ 135 (231)
+|+|+|++++||++| .|.+..+|+||+||+||. ..|.+++++...+.....
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ 559 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQK 559 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHH
Confidence 999999999999998 799999999999999998 579999999876544333
No 52
>KOG4284|consensus
Probab=99.83 E-value=1.5e-20 Score=170.12 Aligned_cols=123 Identities=33% Similarity=0.479 Sum_probs=112.4
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
|+..|-+.+++..-.+.+| ||+..++ |+.++..|...|+.|.++.|.|++.+|..+++.++.=.++|||+||+.+||
T Consensus 259 klq~L~~vf~~ipy~QAlV-F~~~~sr--a~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRG 335 (980)
T KOG4284|consen 259 KLQKLTHVFKSIPYVQALV-FCDQISR--AEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARG 335 (980)
T ss_pred HHHHHHHHHhhCchHHHHh-hhhhhhh--hhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhcc
Confidence 5566666666665566666 9998856 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
||-|+|++|||.|+|.+-.+|.||+|||||-|..|.+++|+..+.+
T Consensus 336 IDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 336 IDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred CCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999988754
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.82 E-value=2e-19 Score=172.02 Aligned_cols=110 Identities=20% Similarity=0.296 Sum_probs=96.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC------------------------------------CCCeeeccCCCCHHHHH
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA------------------------------------GYPCLSLHGGIDQYDRD 62 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~------------------------------------~~~~~~lhg~~~~~~R~ 62 (231)
.++++||||+++ ..++.++..|... ...+.++||+|++.+|.
T Consensus 242 ~~~~~LVF~~sr--~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~ 319 (737)
T PRK02362 242 EGGQCLVFVSSR--RNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRE 319 (737)
T ss_pred cCCCeEEEEeCH--HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHH
Confidence 567888899988 6788888777532 13688999999999999
Q ss_pred HHHHHHhCCCccEEEecCccccccCCCCCcEEEE----ec-----CCCCHhHHHHHhcccCCCCC--ceeEEEEecccc
Q psy17587 63 STIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN----YD-----CPNHYEDYVHRCGRTGRAGN--KGFAYTFITLEQ 130 (231)
Q Consensus 63 ~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~----~d-----~P~~~~~y~qr~GR~gR~g~--~g~~i~~~~~~~ 130 (231)
.+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.|. .|.++++..+.+
T Consensus 320 ~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 320 LVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred HHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 9999999999999999999999999999999997 77 68899999999999999986 499999887653
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.82 E-value=2e-19 Score=168.75 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=95.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHH-hCCCccEEEecCccccccCCCCCcEEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDF-KNGKVRLLIATSVAARGLDVKHLNLVVN 96 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F-~~g~~~vLvaT~~~~~Gldip~v~~VI~ 96 (231)
++.+||||+++ ..++.+.+.|... ++.+..+||+|++. .+.+++| ++|+.+||||||++++|||+|+|++||+
T Consensus 395 ~g~iLVFlpg~--~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 395 GSSGIVFVASV--SQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred CCcEEEEECcH--HHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEE
Confidence 46788999998 6799999999876 79999999999975 4667787 7899999999999999999999999999
Q ss_pred ec---CCC---------CHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 97 YD---CPN---------HYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 97 ~d---~P~---------~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
++ .|. +.++|.||+|||||. ++|.|+.|++..+.
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 98 665 788999999999999 78999999988764
No 55
>KOG0351|consensus
Probab=99.82 E-value=3.8e-20 Score=177.57 Aligned_cols=128 Identities=18% Similarity=0.296 Sum_probs=119.1
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccccc
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGL 86 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gl 86 (231)
+..++..++.+.+....||||.++ ..|+.++..|+..|+++..||+||++.+|..+..+|..++++|+|||=++++||
T Consensus 472 ~~~~~~~~~~~~~~~s~IIYC~sr--~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGI 549 (941)
T KOG0351|consen 472 LLDILEESKLRHPDQSGIIYCLSR--KECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGI 549 (941)
T ss_pred hHHHHHHhhhcCCCCCeEEEeCCc--chHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCC
Confidence 456677778888999999999988 779999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHH
Q psy17587 87 DVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGE 136 (231)
Q Consensus 87 dip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~ 136 (231)
|.|+|+.||||.+|.+.+.|+|.+|||||.|....|++|+...+...++.
T Consensus 550 dK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ 599 (941)
T KOG0351|consen 550 DKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRR 599 (941)
T ss_pred CCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHH
Confidence 99999999999999999999999999999999999999999886654433
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.82 E-value=1.1e-19 Score=178.90 Aligned_cols=112 Identities=15% Similarity=0.245 Sum_probs=98.7
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcE
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNL 93 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~ 93 (231)
....+..++||||+. ..++.+++.|... +..+.++||+|++.+|.+++.+|++|+++|||||+++++|+|+|++++
T Consensus 805 el~r~gqv~vf~n~i--~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~ 882 (1147)
T PRK10689 805 EILRGGQVYYLYNDV--ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 (1147)
T ss_pred HHhcCCeEEEEECCH--HHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCE
Confidence 333467788899987 7799999999876 789999999999999999999999999999999999999999999999
Q ss_pred EEEecCC-CCHhHHHHHhcccCCCCCceeEEEEeccc
Q psy17587 94 VVNYDCP-NHYEDYVHRCGRTGRAGNKGFAYTFITLE 129 (231)
Q Consensus 94 VI~~d~P-~~~~~y~qr~GR~gR~g~~g~~i~~~~~~ 129 (231)
||..+.. .+...|+||+||+||.|..|.|+++..+.
T Consensus 883 VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred EEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 9965443 35678999999999999999999887543
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.81 E-value=1.4e-19 Score=159.39 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=97.5
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCC--CeeeccCCCCHHHHHHH----HHHHhCCCccEEEecC
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGY--PCLSLHGGIDQYDRDST----IVDFKNGKVRLLIATS 80 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~----~~~F~~g~~~vLvaT~ 80 (231)
...+..+++....+++++|||+++ ..++.+++.|...+. .+..+||+|++.+|... ++.|++|+.+|||||+
T Consensus 209 ~~~l~~l~~~~~~~~~~lVf~~t~--~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~ 286 (358)
T TIGR01587 209 ISSLERLLEFIKKGGKIAIIVNTV--DRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ 286 (358)
T ss_pred HHHHHHHHHHhhCCCeEEEEECCH--HHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc
Confidence 344444555555678899999998 779999999987765 59999999999999764 8899999999999999
Q ss_pred ccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCc----eeEEEEeccc
Q psy17587 81 VAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNK----GFAYTFITLE 129 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~----g~~i~~~~~~ 129 (231)
++++|+|+| +++||+++.| +++|+||+||+||.|+. |..+++....
T Consensus 287 ~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 287 VIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred chhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 999999996 7899999887 78999999999998863 3566665433
No 58
>PRK13766 Hef nuclease; Provisional
Probab=99.81 E-value=1.5e-19 Score=173.79 Aligned_cols=122 Identities=27% Similarity=0.368 Sum_probs=109.2
Q ss_pred Cchhhhhcccccc---CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCC--------CCHHHHHHHHHHHhCCCc
Q psy17587 5 YPCLSLHGGIDQY---DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGG--------IDQYDRDSTIVDFKNGKV 73 (231)
Q Consensus 5 ~k~~~L~~~L~~~---~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~--------~~~~~R~~~~~~F~~g~~ 73 (231)
.|+..|.+.|+.. ..+.++||||+.+ .+++.|.+.|...|+.+..+||. |++.+|..++++|++|+.
T Consensus 347 pK~~~L~~il~~~~~~~~~~kvlIF~~~~--~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~ 424 (773)
T PRK13766 347 PKLEKLREIVKEQLGKNPDSRIIVFTQYR--DTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEF 424 (773)
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEeCcH--HHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCC
Confidence 3566677777553 4678999999988 78999999999999999999986 999999999999999999
Q ss_pred cEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEeccc
Q psy17587 74 RLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLE 129 (231)
Q Consensus 74 ~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~ 129 (231)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.+. |.++.++..+
T Consensus 425 ~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 425 NVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred CEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCC
Confidence 999999999999999999999999999999999999999999865 7888887654
No 59
>KOG0349|consensus
Probab=99.80 E-value=9.2e-20 Score=158.79 Aligned_cols=115 Identities=32% Similarity=0.530 Sum_probs=102.9
Q ss_pred ccccCCCCeEEEEcCChhHHHHHHHHHHHHHC---CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCC
Q psy17587 14 IDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA---GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKH 90 (231)
Q Consensus 14 L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~ 90 (231)
+++..- .+.||||.++ ..|+.|-+++.+. .++++++||+..+.||...++.|+.++++.|||||+++||+||..
T Consensus 500 i~~h~m-dkaiifcrtk--~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 500 IRRHAM-DKAIIFCRTK--QDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITG 576 (725)
T ss_pred hhhhcc-CceEEEEecc--ccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccC
Confidence 344433 4555599998 6699999999876 489999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 91 LNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 91 v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
+.++||..+|.+...|+||+||+||+.+-|.+|+++....+
T Consensus 577 ~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~e 617 (725)
T KOG0349|consen 577 LPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPE 617 (725)
T ss_pred CceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccch
Confidence 99999999999999999999999999999999999865543
No 60
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.80 E-value=1.5e-19 Score=169.96 Aligned_cols=123 Identities=21% Similarity=0.312 Sum_probs=109.4
Q ss_pred CCchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 4 GYPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 4 ~~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
..|...+.+.+.+. ..++.+||||+++ ..++.++..|...|+++..+||.++++++..+...|+.| .|+||||++
T Consensus 407 ~~K~~ai~~~i~~~~~~~~pvLIft~s~--~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmA 482 (762)
T TIGR03714 407 PEKLMATLEDVKEYHETGQPVLLITGSV--EMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMA 482 (762)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECcH--HHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEcccc
Confidence 35677777777654 4578899999998 779999999999999999999999999988887777777 799999999
Q ss_pred ccccCCC---------CCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 83 ARGLDVK---------HLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 83 ~~Gldip---------~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
+||+|+| ++.+|++|++|....+ .||+||+||.|.+|.+++|++.+|.
T Consensus 483 gRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 483 GRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred ccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 9999999 9999999999998777 9999999999999999999987664
No 61
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.80 E-value=2.6e-19 Score=178.18 Aligned_cols=107 Identities=25% Similarity=0.371 Sum_probs=92.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCC---------------------------------CCeeeccCCCCHHHHHHHH
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAG---------------------------------YPCLSLHGGIDQYDRDSTI 65 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~---------------------------------~~~~~lhg~~~~~~R~~~~ 65 (231)
..+++|||||++ ..++.++..|.... +.+.++||+|++++|..++
T Consensus 243 ~~~stLVFvNSR--~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE 320 (1490)
T PRK09751 243 RHRSTIVFTNSR--GLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITE 320 (1490)
T ss_pred cCCCEEEECCCH--HHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHH
Confidence 456778899988 77999999886531 1256899999999999999
Q ss_pred HHHhCCCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCC-CCceeEEEEec
Q psy17587 66 VDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRA-GNKGFAYTFIT 127 (231)
Q Consensus 66 ~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~-g~~g~~i~~~~ 127 (231)
+.|++|++++||||+.+++|||+|+|++|||++.|.++.+|+||+||+||. |..+.++++..
T Consensus 321 ~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 321 QALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 999999999999999999999999999999999999999999999999996 33455554443
No 62
>KOG0337|consensus
Probab=99.80 E-value=5.3e-20 Score=159.52 Aligned_cols=139 Identities=29% Similarity=0.350 Sum_probs=128.0
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.+|...|+..+.....+++.++||.++ -.++.+...|...|+.+..++|.|++..|...+.+|+.++..+||.||+++
T Consensus 245 a~K~aaLl~il~~~~~~~~t~vf~~tk--~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaa 322 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIKDKQTIVFVATK--HHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAA 322 (529)
T ss_pred HHHHHHHHHHHhccccccceeEEeccc--chHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhh
Confidence 467888888888888777888899998 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhC
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEAS 144 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~ 144 (231)
||+|+|-.+.|||||+|.+..-|+||+||++|+|+.|.+|.++.+.+...+-++..++..+
T Consensus 323 RG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~ 383 (529)
T KOG0337|consen 323 RGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRP 383 (529)
T ss_pred ccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCc
Confidence 9999999999999999999999999999999999999999999999887776666666443
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.80 E-value=2.1e-19 Score=172.13 Aligned_cols=110 Identities=21% Similarity=0.363 Sum_probs=99.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH---CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK---AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN 96 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~ 96 (231)
...+||||++. ..++.+++.|.. .++.+..+||+|++++|.++++.|++|+.+|+||||++++|||||+|++||+
T Consensus 209 ~g~iLVFlpg~--~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQ--AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCH--HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEE
Confidence 46788899998 679999999976 4789999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC------------------HhHHHHHhcccCCCCCceeEEEEecccchH
Q psy17587 97 YDCPNH------------------YEDYVHRCGRTGRAGNKGFAYTFITLEQER 132 (231)
Q Consensus 97 ~d~P~~------------------~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~ 132 (231)
+++|.. ..+|.||+||+||. .+|.||.+++..+..
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 998853 34699999999998 799999999876543
No 64
>PRK00254 ski2-like helicase; Provisional
Probab=99.77 E-value=2.1e-18 Score=164.72 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=91.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH---------------------------------CCCCeeeccCCCCHHHHHHHH
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK---------------------------------AGYPCLSLHGGIDQYDRDSTI 65 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~---------------------------------~~~~~~~lhg~~~~~~R~~~~ 65 (231)
.++++||||+++ ..++.++..|.. ....+.++||+|++++|..++
T Consensus 237 ~~~~vLVF~~sr--~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve 314 (720)
T PRK00254 237 KGKGALVFVNTR--RSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIE 314 (720)
T ss_pred hCCCEEEEEcCh--HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHH
Confidence 357888899987 667776655531 123588999999999999999
Q ss_pred HHHhCCCccEEEecCccccccCCCCCcEEEE-------ecCCC-CHhHHHHHhcccCCCC--CceeEEEEecccc
Q psy17587 66 VDFKNGKVRLLIATSVAARGLDVKHLNLVVN-------YDCPN-HYEDYVHRCGRTGRAG--NKGFAYTFITLEQ 130 (231)
Q Consensus 66 ~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~-------~d~P~-~~~~y~qr~GR~gR~g--~~g~~i~~~~~~~ 130 (231)
+.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.++++..+.+
T Consensus 315 ~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 315 DAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999999999999999999999999994 55544 5779999999999976 5799999987654
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.77 E-value=8.1e-19 Score=168.19 Aligned_cols=109 Identities=20% Similarity=0.342 Sum_probs=98.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH---CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK---AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN 96 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~ 96 (231)
...++|||++. ..++.+++.|.. .++.+..+||+|++.+|.+++..|++|+.+|+||||++++|||+|+|++||+
T Consensus 212 ~g~iLVFlpg~--~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGV--GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCH--HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEE
Confidence 57788899998 779999999986 5788999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC------------------HhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 97 YDCPNH------------------YEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 97 ~d~P~~------------------~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
+++|.. ..+|.||+||+||. .+|.||.+++..+.
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 877653 35899999999998 69999999986643
No 66
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.77 E-value=2e-18 Score=161.64 Aligned_cols=122 Identities=21% Similarity=0.251 Sum_probs=109.9
Q ss_pred chhhhhccc-cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 6 PCLSLHGGI-DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 6 k~~~L~~~L-~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
|..++.+.+ ..+..++.+||||++. ..++.+++.|...|+++..+||+ +.+|...+..|+.+...|+|||++++|
T Consensus 390 k~~ai~~~i~~~~~~grpvLV~t~si--~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgR 465 (745)
T TIGR00963 390 KWKAVVDEIKERHAKGQPVLVGTTSV--EKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGR 465 (745)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcH--HHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccC
Confidence 455565555 3345689999999988 77999999999999999999998 789999999999999999999999999
Q ss_pred ccCCCC-------CcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 85 GLDVKH-------LNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 85 Gldip~-------v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
|+||+. ..+||+++.|.+...|.|+.||+||.|.+|.+..|++..|.
T Consensus 466 GtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 466 GTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred CcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 999998 45999999999999999999999999999999999988764
No 67
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.76 E-value=3.8e-18 Score=117.93 Aligned_cols=81 Identities=42% Similarity=0.758 Sum_probs=77.1
Q ss_pred HHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCC
Q psy17587 37 AIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRA 116 (231)
Q Consensus 37 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~ 116 (231)
.+.+.|...++.+..+||+|++.+|..+++.|+++...||++|+++++|+|+|+++.||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy17587 117 G 117 (231)
Q Consensus 117 g 117 (231)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 68
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=7.2e-18 Score=158.43 Aligned_cols=134 Identities=18% Similarity=0.206 Sum_probs=107.5
Q ss_pred CchhhhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC-CccEEEecCcc
Q psy17587 5 YPCLSLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG-KVRLLIATSVA 82 (231)
Q Consensus 5 ~k~~~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLvaT~~~ 82 (231)
+|+..+..++..+. .+.++||||+.. ..++.++..| .+..+||++++.+|.+++++|+.| .+++||+|+++
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~--~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNV--FALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCH--HHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 45555555665443 678999999987 6788888877 246799999999999999999965 88999999999
Q ss_pred ccccCCCCCcEEEEecCCC-CHhHHHHHhcccCCCCCceeE-------EEEecccc--hHHHHHHHHHHHhCC
Q psy17587 83 ARGLDVKHLNLVVNYDCPN-HYEDYVHRCGRTGRAGNKGFA-------YTFITLEQ--ERHAGEIIRALEASG 145 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~-~~~~y~qr~GR~gR~g~~g~~-------i~~~~~~~--~~~~~~~~~~l~~~~ 145 (231)
.+|+|+|++++||+++.|. +...|+||+||++|.+..|.+ +.+++++. ......-.++|...+
T Consensus 553 deGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred ccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 9999999999999999985 999999999999999876654 78888764 444445555554433
No 69
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=4.1e-18 Score=160.67 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=110.0
Q ss_pred Cchhhhhccccc-cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 5 YPCLSLHGGIDQ-YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 5 ~k~~~L~~~L~~-~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.|...|.+.+.. ...++.+||||+++ ..++.+++.|.+.|+++..+||++..+++..+.+.++.|. |+|||++++
T Consensus 424 ~K~~al~~~i~~~~~~g~pvLI~t~si--~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAG 499 (796)
T PRK12906 424 SKFNAVVKEIKERHAKGQPVLVGTVAI--ESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAG 499 (796)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCcH--HHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEecccc
Confidence 355667777743 34689999999998 7799999999999999999999999888888888888777 999999999
Q ss_pred cccCCC---CCc-----EEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 84 RGLDVK---HLN-----LVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 84 ~Gldip---~v~-----~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
||+||+ +|. +||+++.|.+...|.|+.||+||.|.+|.+..|++.+|.
T Consensus 500 RGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 500 RGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 999995 899 999999999999999999999999999999999987754
No 70
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.74 E-value=1.2e-17 Score=158.71 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=89.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHH-----HHHHHHhC----CC-------ccEEEecCcc
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRD-----STIVDFKN----GK-------VRLLIATSVA 82 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~-----~~~~~F~~----g~-------~~vLvaT~~~ 82 (231)
.++++|||||++ ..++.+++.|...++ ..+||+|++.+|. .++++|++ |+ ..|||||+++
T Consensus 271 ~g~~vLVF~NTv--~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 271 SGGAILVFCRTV--KHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred CCCcEEEEECCH--HHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 457888899998 779999999998876 8999999999999 88999987 54 6899999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCc-eeEEEEecc
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNK-GFAYTFITL 128 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~-g~~i~~~~~ 128 (231)
++|||++. ++||++..| .++|+||+||+||.|.. +..+.++..
T Consensus 347 erGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 99999987 899998877 69999999999999985 444666543
No 71
>PRK01172 ski2-like helicase; Provisional
Probab=99.73 E-value=3.7e-17 Score=155.22 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=91.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHC-------------------------CCCeeeccCCCCHHHHHHHHHHHhCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKA-------------------------GYPCLSLHGGIDQYDRDSTIVDFKNGK 72 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~-------------------------~~~~~~lhg~~~~~~R~~~~~~F~~g~ 72 (231)
..++.++|||+++ ..++.++..|... ...+.++||+|++++|..+++.|++|.
T Consensus 234 ~~~~~vLVF~~sr--~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~ 311 (674)
T PRK01172 234 NDGGQVLVFVSSR--KNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRY 311 (674)
T ss_pred hCCCcEEEEeccH--HHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 3467888899988 6799888887542 124778999999999999999999999
Q ss_pred ccEEEecCccccccCCCCCcEEEEecC---------CCCHhHHHHHhcccCCCCC--ceeEEEEecccc
Q psy17587 73 VRLLIATSVAARGLDVKHLNLVVNYDC---------PNHYEDYVHRCGRTGRAGN--KGFAYTFITLEQ 130 (231)
Q Consensus 73 ~~vLvaT~~~~~Gldip~v~~VI~~d~---------P~~~~~y~qr~GR~gR~g~--~g~~i~~~~~~~ 130 (231)
++|||||+++++|+|+|+..+|| +|. |.+..+|.||+|||||.|. .|.+++++...+
T Consensus 312 i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 312 IKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred CeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 99999999999999999865544 443 5578899999999999984 677888876543
No 72
>KOG0352|consensus
Probab=99.73 E-value=1.3e-17 Score=145.20 Aligned_cols=110 Identities=17% Similarity=0.372 Sum_probs=104.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecCC
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCP 100 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P 100 (231)
..-||||.++ +.|++++=.|...|+.+..+|+|+...||..+.++|.++++.|++||..+++|+|-|+|++|||+|+|
T Consensus 256 GCGIVYCRTR--~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~ 333 (641)
T KOG0352|consen 256 GCGIVYCRTR--NECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPS 333 (641)
T ss_pred cceEEEeccH--HHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCch
Confidence 4556699987 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHhcccCCCCCceeEEEEecccchH
Q psy17587 101 NHYEDYVHRCGRTGRAGNKGFAYTFITLEQER 132 (231)
Q Consensus 101 ~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~ 132 (231)
.++..|.|..||+||.|..+.|-+++...|..
T Consensus 334 qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred hhhHHHHHhccccccCCCccceeeeecccchH
Confidence 99999999999999999999999999877654
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.73 E-value=2.5e-17 Score=151.34 Aligned_cols=99 Identities=17% Similarity=0.128 Sum_probs=90.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEec-CccccccCCCCCcEEEEe
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIAT-SVAARGLDVKHLNLVVNY 97 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT-~~~~~Gldip~v~~VI~~ 97 (231)
.+.+++|||++. ++++.|++.|...+.++..+||+|++++|..+++.|++|+..||||| +++++|+|+|++++||++
T Consensus 343 ~~~~~lV~~~~~--~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~ 420 (501)
T PHA02558 343 KGENTFVMFKYV--EHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFA 420 (501)
T ss_pred cCCCEEEEEEEH--HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEe
Confidence 345666677766 68999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred cCCCCHhHHHHHhcccCCCCCc
Q psy17587 98 DCPNHYEDYVHRCGRTGRAGNK 119 (231)
Q Consensus 98 d~P~~~~~y~qr~GR~gR~g~~ 119 (231)
++|.+...|+||+||++|.+..
T Consensus 421 ~p~~s~~~~~QriGR~~R~~~~ 442 (501)
T PHA02558 421 HPSKSKIIVLQSIGRVLRKHGS 442 (501)
T ss_pred cCCcchhhhhhhhhccccCCCC
Confidence 9999999999999999998754
No 74
>KOG0354|consensus
Probab=99.73 E-value=3.9e-17 Score=151.68 Aligned_cols=121 Identities=29% Similarity=0.395 Sum_probs=99.8
Q ss_pred chhhhhccccc---cCCCCeEEEEcCChhHHHHHHHHHHHHH---CCCCeeeccC--------CCCHHHHHHHHHHHhCC
Q psy17587 6 PCLSLHGGIDQ---YDRDSTIVDFKNGKVRLLVCAIVKELMK---AGYPCLSLHG--------GIDQYDRDSTIVDFKNG 71 (231)
Q Consensus 6 k~~~L~~~L~~---~~~~~~iiiF~~~~~~~~~~~l~~~L~~---~~~~~~~lhg--------~~~~~~R~~~~~~F~~g 71 (231)
|+..|.+.|.+ ..++.++||||..+ ..++.|..+|.. .+++...+-| +|++.++..++++|++|
T Consensus 396 kle~l~~~l~e~f~~~~dsR~IIFve~R--~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 396 KLEKLVEILVEQFEQNPDSRTIIFVETR--ESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred hHHHHHHHHHHHhhcCCCccEEEEEehH--HHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 45555555532 34578999999977 789999999872 2344444433 79999999999999999
Q ss_pred CccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccc
Q psy17587 72 KVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQ 130 (231)
Q Consensus 72 ~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~ 130 (231)
+++|||||+++++|||+|+|++||-||.-.++...+||.|| ||.. .|.++++++..+
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~ 530 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSE 530 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcchh
Confidence 99999999999999999999999999999999999999999 9975 578888887433
No 75
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.9e-17 Score=157.64 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=110.8
Q ss_pred CCchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 4 GYPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 4 ~~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
..|..+|.+.+... ..++.+||||+++ +.++.|+..|...|+++..+|+ .+.+|...+..|+.+...|+|||+++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sv--e~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASV--EVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcH--HHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 35677888888544 4578999999998 7799999999999999999997 58899999999999999999999999
Q ss_pred ccccCCC---CCc-----EEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 83 ARGLDVK---HLN-----LVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 83 ~~Gldip---~v~-----~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
+||+||+ +|. +||+++.|.+...|.|+.||+||.|.+|.+++|++.+|.
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999 554 459999999999999999999999999999999988764
No 76
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.70 E-value=4.7e-17 Score=159.97 Aligned_cols=108 Identities=20% Similarity=0.297 Sum_probs=94.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCC---eeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEE
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYP---CLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVV 95 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI 95 (231)
..+.+||||++. ..++.+++.|...++. +..+||+|++.+|.++++. .|..+|+||||++++|||+|+|++||
T Consensus 285 ~~GdILVFLpg~--~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGE--REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCH--HHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEE
Confidence 457789999998 6799999999887764 6789999999999999886 47889999999999999999999999
Q ss_pred Eec---------------CCC---CHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 96 NYD---------------CPN---HYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 96 ~~d---------------~P~---~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
+++ +|. +.++|.||.|||||. .+|.||.+++..+.
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 985 443 458999999999999 68999999987653
No 77
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.66 E-value=3.4e-15 Score=137.24 Aligned_cols=170 Identities=16% Similarity=0.194 Sum_probs=121.3
Q ss_pred hhhccc-cccCCCCeEEEEcCChhH------HHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEec
Q psy17587 9 SLHGGI-DQYDRDSTIVDFKNGKVR------LLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIAT 79 (231)
Q Consensus 9 ~L~~~L-~~~~~~~~iiiF~~~~~~------~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT 79 (231)
.+++.+ .+...++.+-+.|+-... ..++.+++.|... ++.+..+||.|++.+++.+|++|++|+++|||||
T Consensus 461 ~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaT 540 (677)
T COG1200 461 EVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVAT 540 (677)
T ss_pred HHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 334444 233356677767765322 2466777777643 6779999999999999999999999999999999
Q ss_pred CccccccCCCCCcEEEEecCCC-CHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCC--CchhHHHHH
Q psy17587 80 SVAARGLDVKHLNLVVNYDCPN-HYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVP--IPEDLDKMW 156 (231)
Q Consensus 80 ~~~~~Gldip~v~~VI~~d~P~-~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~--~~~~l~~~~ 156 (231)
.|.+.|+|+|+.+++|.+|.-. ..++..|-.||+||.+..+.|+++..+...+..+.-.+.+.....- +.+.-.++.
T Consensus 541 TVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLklR 620 (677)
T COG1200 541 TVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKLR 620 (677)
T ss_pred eEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhcc
Confidence 9999999999999999988765 6888999999999999999999999988756555566666554433 223212222
Q ss_pred hhchhhhhccccCCCCCcccchhh
Q psy17587 157 AEDLIVRTFCFRAGNKGFAYTFIT 180 (231)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~ 180 (231)
..+..+ +....|..+|.+.+..
T Consensus 621 GpGe~l--G~rQSG~~~f~~Adl~ 642 (677)
T COG1200 621 GPGELL--GTRQSGLPEFRVADLV 642 (677)
T ss_pred CCcccc--CCcccCCcceEEeeHH
Confidence 222221 1223456667766643
No 78
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.66 E-value=1.1e-15 Score=144.71 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=102.5
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCC-CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAG-YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
+..+.++++++ +.++||+|++ .+++.++..|.+.+ ..+..+||+++.+.|..+.++|++|+.+++|||+.++-|
T Consensus 243 ~~~i~~~v~~~---~ttLIF~NTR--~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELG 317 (814)
T COG1201 243 YERIAELVKKH---RTTLIFTNTR--SGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELG 317 (814)
T ss_pred HHHHHHHHhhc---CcEEEEEeCh--HHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhc
Confidence 34455555544 4788899988 77999999998876 899999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCC-CCCceeEEEEecc
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGR-AGNKGFAYTFITL 128 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR-~g~~g~~i~~~~~ 128 (231)
||+.+++.||++..|.+++..+||+||+|+ .+....++.+...
T Consensus 318 IDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 318 IDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999995 4555677777665
No 79
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.65 E-value=5e-16 Score=153.13 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=92.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCC---CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEE
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAG---YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVV 95 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI 95 (231)
..+.|+||+++. ..++.+++.|...+ +.+..+||+|++++|.+++..+ +..+|+|||+++++|||+|+|.+||
T Consensus 278 ~~GdILVFLpg~--~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 278 GPGDILIFLPGE--REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred CCCCEEEeCCCH--HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEE
Confidence 357889999998 67999999998764 4588999999999999986654 2468999999999999999999999
Q ss_pred EecCCC------------------CHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 96 NYDCPN------------------HYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 96 ~~d~P~------------------~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
+++++. +.++|.||.||+||.+ +|.||.+++..+.
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 988543 5679999999999998 8999999986643
No 80
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.65 E-value=6.7e-16 Score=138.78 Aligned_cols=109 Identities=17% Similarity=0.305 Sum_probs=94.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE---
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN--- 96 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~--- 96 (231)
....|||++++ ..|..|+..|..+|+++.++|+||+..+|..+...|.++++.++|+|-+++.|+|+|.-.+|+.
T Consensus 440 rGQtIVFT~SR--rr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLa 517 (830)
T COG1202 440 RGQTIVFTYSR--RRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLA 517 (830)
T ss_pred CCceEEEecch--hhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHH
Confidence 45566699988 6699999999999999999999999999999999999999999999999999999998544331
Q ss_pred ecCCC-CHhHHHHHhcccCCCCC--ceeEEEEecccc
Q psy17587 97 YDCPN-HYEDYVHRCGRTGRAGN--KGFAYTFITLEQ 130 (231)
Q Consensus 97 ~d~P~-~~~~y~qr~GR~gR~g~--~g~~i~~~~~~~ 130 (231)
...-| ++.+|.||+|||||++. .|.+++++.++.
T Consensus 518 MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 518 MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred cccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 33344 79999999999999985 699999998764
No 81
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.61 E-value=1.7e-15 Score=133.64 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=73.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCC--CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAG--YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN 96 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~ 96 (231)
.+.+++||||++ ..++.+++.|...+ +.+..+||.+++.+|.++ ++.+|||||++++||+|+|.+ +||
T Consensus 271 ~~~k~LIf~nt~--~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSL--DEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI- 340 (357)
T ss_pred CCCeEEEEECCH--HHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-
Confidence 467888899998 77999999998754 578899999999998754 478999999999999999986 555
Q ss_pred ecCCCCHhHHHHHhcccC
Q psy17587 97 YDCPNHYEDYVHRCGRTG 114 (231)
Q Consensus 97 ~d~P~~~~~y~qr~GR~g 114 (231)
++ |.+.++|+||+||+|
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 55 899999999999987
No 82
>KOG0353|consensus
Probab=99.59 E-value=2e-15 Score=130.21 Aligned_cols=120 Identities=17% Similarity=0.267 Sum_probs=108.7
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCC
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDV 88 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldi 88 (231)
.+..+|+....++.-||||-++ ..++.++..|...|+.+..+|+.|.|++|..+-+.|-.|++.|+|+|-++++|+|-
T Consensus 306 di~k~i~~~f~gqsgiiyc~sq--~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidk 383 (695)
T KOG0353|consen 306 DIAKLIKGDFAGQSGIIYCFSQ--KDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDK 383 (695)
T ss_pred HHHHHhccccCCCcceEEEecc--ccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCC
Confidence 3445556556677777799887 56999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHhHHHH-------------------------------------------HhcccCCCCCceeEEEE
Q psy17587 89 KHLNLVVNYDCPNHYEDYVH-------------------------------------------RCGRTGRAGNKGFAYTF 125 (231)
Q Consensus 89 p~v~~VI~~d~P~~~~~y~q-------------------------------------------r~GR~gR~g~~g~~i~~ 125 (231)
|+|++||+..+|.+.+.|.| ..||+||.+.+..||++
T Consensus 384 pdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cily 463 (695)
T KOG0353|consen 384 PDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILY 463 (695)
T ss_pred CCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEE
Confidence 99999999999999999999 77999999999999999
Q ss_pred ecccc
Q psy17587 126 ITLEQ 130 (231)
Q Consensus 126 ~~~~~ 130 (231)
+.-.+
T Consensus 464 y~~~d 468 (695)
T KOG0353|consen 464 YGFAD 468 (695)
T ss_pred echHH
Confidence 87554
No 83
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.59 E-value=9.8e-15 Score=142.05 Aligned_cols=122 Identities=24% Similarity=0.331 Sum_probs=103.3
Q ss_pred chhhhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC---CccEEEecCc
Q psy17587 6 PCLSLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG---KVRLLIATSV 81 (231)
Q Consensus 6 k~~~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g---~~~vLvaT~~ 81 (231)
|+..|..+|.... .+.++||||... ...+.|.++|...|+....+||+++..+|..+++.|... ...+|++|.+
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft--~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMT--RLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHH--HHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 4555555554433 478999999965 789999999999999999999999999999999999753 3457899999
Q ss_pred cccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCcee--EEEEeccc
Q psy17587 82 AARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGF--AYTFITLE 129 (231)
Q Consensus 82 ~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~--~i~~~~~~ 129 (231)
++.|||++.+++||+||+||+|....|++||+.|.|+... ++.|++.+
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999998644 45566554
No 84
>PRK14701 reverse gyrase; Provisional
Probab=99.55 E-value=4.3e-15 Score=150.28 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=97.8
Q ss_pred hhhhccccccCCCCeEEEEcCChhH-HHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEec----Ccc
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVR-LLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIAT----SVA 82 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~-~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT----~~~ 82 (231)
..|.++++.. +...||||+++.. +.++.+++.|...|+++..+||+ |..++++|++|+++||||| +++
T Consensus 320 ~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gva 392 (1638)
T PRK14701 320 EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTL 392 (1638)
T ss_pred HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCee
Confidence 3566666655 3567779998622 24699999999999999999995 8899999999999999999 589
Q ss_pred ccccCCCC-CcEEEEecCCC---CHhHHHHHh-------------cccCCCCCceeEEEEecccchHHHH
Q psy17587 83 ARGLDVKH-LNLVVNYDCPN---HYEDYVHRC-------------GRTGRAGNKGFAYTFITLEQERHAG 135 (231)
Q Consensus 83 ~~Gldip~-v~~VI~~d~P~---~~~~y~qr~-------------GR~gR~g~~g~~i~~~~~~~~~~~~ 135 (231)
+||||+|+ |++|||||+|. +.+.|.|.. ||+||.|.++.+++.....+....+
T Consensus 393 aRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 393 VRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLR 462 (1638)
T ss_pred EecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHH
Confidence 99999999 99999999999 888777765 9999999887777544444444333
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.55 E-value=1.1e-13 Score=133.47 Aligned_cols=98 Identities=24% Similarity=0.323 Sum_probs=84.5
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHCC---CCeeeccCCCCHHHH----HHHHHHH-hCCC---ccEEEecCcccc
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKAG---YPCLSLHGGIDQYDR----DSTIVDF-KNGK---VRLLIATSVAAR 84 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R----~~~~~~F-~~g~---~~vLvaT~~~~~ 84 (231)
....+++++||||+. ..+..+++.|...+ .++..+||.+++.+| .++++.| ++|+ ..|||||+++++
T Consensus 556 ~~~~g~~vLVf~NTV--~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~ 633 (878)
T PRK09694 556 AANAGAQVCLICNLV--DDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQ 633 (878)
T ss_pred HHhcCCEEEEEECCH--HHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhh
Confidence 345678899999988 67999999998754 679999999999999 4567788 6666 479999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCC
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGN 118 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~ 118 (231)
|+|+ +++++|....| .+.|+||+||++|.+.
T Consensus 634 GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 634 SLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999 57999998888 7899999999999875
No 86
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.55 E-value=7.3e-14 Score=133.12 Aligned_cols=114 Identities=22% Similarity=0.338 Sum_probs=93.1
Q ss_pred ccccCCCCeEEEEcCChhHHHHHHHHHHHHHC-------------------------------------CCCeeeccCCC
Q psy17587 14 IDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA-------------------------------------GYPCLSLHGGI 56 (231)
Q Consensus 14 L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~~ 56 (231)
+.....+..++|||+++ ..+...++.|... ...+.++|+||
T Consensus 247 ~~~~~~~~qvLvFv~sR--~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL 324 (766)
T COG1204 247 LESLAEGGQVLVFVHSR--KEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL 324 (766)
T ss_pred HHHHhcCCeEEEEEecC--chHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCC
Confidence 34555678899999987 5577777776520 13466899999
Q ss_pred CHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEE----Eec-----CCCCHhHHHHHhcccCCCCC--ceeEEEE
Q psy17587 57 DQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVV----NYD-----CPNHYEDYVHRCGRTGRAGN--KGFAYTF 125 (231)
Q Consensus 57 ~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI----~~d-----~P~~~~~y~qr~GR~gR~g~--~g~~i~~ 125 (231)
+.++|..+.+.|+.|+++|||||+.+++|+|+|.-.+|| -|| .+-++.+|.|+.|||||+|- .|.++++
T Consensus 325 ~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~ 404 (766)
T COG1204 325 PREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIIL 404 (766)
T ss_pred CHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEE
Confidence 999999999999999999999999999999999877666 377 56679999999999999995 5777777
Q ss_pred eccc
Q psy17587 126 ITLE 129 (231)
Q Consensus 126 ~~~~ 129 (231)
.+..
T Consensus 405 ~~~~ 408 (766)
T COG1204 405 ATSH 408 (766)
T ss_pred ecCc
Confidence 7444
No 87
>PRK09401 reverse gyrase; Reviewed
Probab=99.54 E-value=8.9e-15 Score=144.89 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=86.6
Q ss_pred chhhhhccccccCCCCeEEEEcCChh-HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEe----cC
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKV-RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIA----TS 80 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~-~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLva----T~ 80 (231)
|...|.++++... ...||||+++. .+.++.+++.|...|+++..+||+| .+.+++|++|+++|||| ||
T Consensus 316 k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~td 388 (1176)
T PRK09401 316 SVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYG 388 (1176)
T ss_pred HHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCC
Confidence 4556666776553 46777999751 2349999999999999999999999 23469999999999999 69
Q ss_pred ccccccCCCC-CcEEEEecCCC------CHhHHHHHhcccCC
Q psy17587 81 VAARGLDVKH-LNLVVNYDCPN------HYEDYVHRCGRTGR 115 (231)
Q Consensus 81 ~~~~Gldip~-v~~VI~~d~P~------~~~~y~qr~GR~gR 115 (231)
+++||||+|+ |++|||||+|. ..+.|.||+||+..
T Consensus 389 v~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 389 VLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred ceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999 89999999998 67889999999863
No 88
>KOG0329|consensus
Probab=99.50 E-value=8.6e-15 Score=120.40 Aligned_cols=76 Identities=36% Similarity=0.696 Sum_probs=65.8
Q ss_pred EEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEeccc-chHHHHHHHHHHHhCCCCCchh
Q psy17587 76 LIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLE-QERHAGEIIRALEASGVPIPED 151 (231)
Q Consensus 76 LvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 151 (231)
||||++++||+|+..|++|+|||+|.+.++|+||+|||||-|..|.+|+|++.. +...+..+.+........+|+.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 899999999999999999999999999999999999999999999999999876 4555566666666555556654
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.45 E-value=5.7e-13 Score=120.73 Aligned_cols=107 Identities=17% Similarity=0.327 Sum_probs=95.5
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccccc
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGL 86 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gl 86 (231)
...+..++.....+.+++|||... .+++.++..+...++ +..+.|..++.+|..+++.|+.|++++||++.++.+|+
T Consensus 270 ~~~~~~~~~~~~~~~~~lif~~~~--~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGv 346 (442)
T COG1061 270 IAAVRGLLLKHARGDKTLIFASDV--EHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGV 346 (442)
T ss_pred HHHHHHHHHHhcCCCcEEEEeccH--HHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeecccee
Confidence 344444454443577888899988 789999999988887 88999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCHhHHHHHhcccCCC
Q psy17587 87 DVKHLNLVVNYDCPNHYEDYVHRCGRTGRA 116 (231)
Q Consensus 87 dip~v~~VI~~d~P~~~~~y~qr~GR~gR~ 116 (231)
|+|+++++|...+..+...|+||+||.-|.
T Consensus 347 DiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 347 DIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999993
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.42 E-value=1.8e-12 Score=125.33 Aligned_cols=118 Identities=18% Similarity=0.321 Sum_probs=100.8
Q ss_pred hhccc-cccCCCCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccccc
Q psy17587 10 LHGGI-DQYDRDSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGL 86 (231)
Q Consensus 10 L~~~L-~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gl 86 (231)
+.+.| ++...++.+-..+|.. +.++.+++.|+.. ..++.+.||.|+..+-+.+|.+|.+|+.+|||||.+.+-||
T Consensus 792 ireAI~REl~RgGQvfYv~NrV--~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGI 869 (1139)
T COG1197 792 IREAILRELLRGGQVFYVHNRV--ESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGI 869 (1139)
T ss_pred HHHHHHHHHhcCCEEEEEecch--hhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCc
Confidence 33334 4445577777567876 7799999999764 57799999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCC-CHhHHHHHhcccCCCCCceeEEEEeccc
Q psy17587 87 DVKHLNLVVNYDCPN-HYEDYVHRCGRTGRAGNKGFAYTFITLE 129 (231)
Q Consensus 87 dip~v~~VI~~d~P~-~~~~y~qr~GR~gR~g~~g~~i~~~~~~ 129 (231)
|+|+++++|..+.-. ..++..|..||+||.+..+.|++++.+.
T Consensus 870 DIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 870 DIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 999999988776554 7999999999999999999999998764
No 91
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.42 E-value=8.8e-12 Score=111.78 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=106.6
Q ss_pred Cchhhhhccccc-cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 5 YPCLSLHGGIDQ-YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 5 ~k~~~L~~~L~~-~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
..+.-|++-|+. ...+.+++|-+-++ ..++.|.++|...|+++.++|++...-+|.+++.+.|.|.++|||.-+.+-
T Consensus 430 ~QvdDL~~EI~~r~~~~eRvLVTtLTK--kmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLR 507 (663)
T COG0556 430 GQVDDLLSEIRKRVAKNERVLVTTLTK--KMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (663)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehH--HHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhh
Confidence 445566666654 44578999888888 889999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEec-----CCCCHhHHHHHhcccCCCCCceeEEEEecc
Q psy17587 84 RGLDVKHLNLVVNYD-----CPNHYEDYVHRCGRTGRAGNKGFAYTFITL 128 (231)
Q Consensus 84 ~Gldip~v~~VI~~d-----~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~ 128 (231)
+|+|+|.|++|..+| +..+-.+++|-+|||+|. ..|.+|++...
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 999999999999887 456889999999999995 46899888753
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=1.3e-12 Score=124.18 Aligned_cols=123 Identities=22% Similarity=0.229 Sum_probs=108.2
Q ss_pred Cchhhhhccccc-cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 5 YPCLSLHGGIDQ-YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 5 ~k~~~L~~~L~~-~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.|..++.+.+.. +..++.+||||+++ ..++.+++.|...|+++..+||. +.+|...+..|+.++..|+|||++++
T Consensus 414 ~K~~aI~~~I~~~~~~grpVLIft~Si--~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAG 489 (830)
T PRK12904 414 EKFDAVVEDIKERHKKGQPVLVGTVSI--EKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAG 489 (830)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcH--HHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEeccccc
Confidence 466677777755 34578999999998 77999999999999999999996 78999999999999999999999999
Q ss_pred cccCCCCC--------------------------------------cEEEEecCCCCHhHHHHHhcccCCCCCceeEEEE
Q psy17587 84 RGLDVKHL--------------------------------------NLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTF 125 (231)
Q Consensus 84 ~Gldip~v--------------------------------------~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~ 125 (231)
||+||+-- =+||--..|.+..---|-.||+||.|.+|.+-.|
T Consensus 490 RGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 490 RGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred CCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 99999842 1788888999999999999999999999999999
Q ss_pred ecccch
Q psy17587 126 ITLEQE 131 (231)
Q Consensus 126 ~~~~~~ 131 (231)
++-+|.
T Consensus 570 lSleD~ 575 (830)
T PRK12904 570 LSLEDD 575 (830)
T ss_pred EEcCcH
Confidence 887654
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.38 E-value=1.1e-12 Score=130.22 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=75.3
Q ss_pred hhhhccccccCCCCeEEEEcCCh-hHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEe----cCcc
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGK-VRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIA----TSVA 82 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~-~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLva----T~~~ 82 (231)
..|.++|+... ...||||+++ ..+.++.+++.|...|+++..+||+|++ .++++|++|+++|||| ||++
T Consensus 316 ~~L~~ll~~l~--~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~ 389 (1171)
T TIGR01054 316 ETLLEIVKKLG--TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTL 389 (1171)
T ss_pred HHHHHHHHHcC--CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcc
Confidence 45666666553 4677799875 2245999999999999999999999973 6899999999999999 5999
Q ss_pred ccccCCCC-CcEEEEecCCCC
Q psy17587 83 ARGLDVKH-LNLVVNYDCPNH 102 (231)
Q Consensus 83 ~~Gldip~-v~~VI~~d~P~~ 102 (231)
+||||+|+ |++|||||+|..
T Consensus 390 aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 390 VRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred cccCCCCccccEEEEECCCCE
Confidence 99999999 899999999974
No 94
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=3.4e-12 Score=121.76 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=104.8
Q ss_pred chhhhhccccc-cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 6 PCLSLHGGIDQ-YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 6 k~~~L~~~L~~-~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
|..++.+.+.+ +..++.+||||+++ +.++.+++.|...|+++..+||.+.+.++..+.+.|+.|. |+|||++++|
T Consensus 429 k~~av~~~i~~~~~~g~PVLVgt~Si--e~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGR 504 (896)
T PRK13104 429 KFQAIIEDVRECGVRKQPVLVGTVSI--EASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGR 504 (896)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCcH--HHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccC
Confidence 44455555543 44689999999998 7899999999999999999999999999999999999994 9999999999
Q ss_pred ccCCCCC--------------------------------------cEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEe
Q psy17587 85 GLDVKHL--------------------------------------NLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFI 126 (231)
Q Consensus 85 Gldip~v--------------------------------------~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~ 126 (231)
|+||.=- =+||--..+.+..-=-|-.||+||.|.+|.+-.|+
T Consensus 505 GtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l 584 (896)
T PRK13104 505 GTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL 584 (896)
T ss_pred CcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE
Confidence 9998721 16777778888888899999999999999999998
Q ss_pred cccch
Q psy17587 127 TLEQE 131 (231)
Q Consensus 127 ~~~~~ 131 (231)
+-+|.
T Consensus 585 SleD~ 589 (896)
T PRK13104 585 SLEDN 589 (896)
T ss_pred EcCcH
Confidence 86654
No 95
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.35 E-value=4.4e-12 Score=120.45 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHC--CCCeeeccCCCC--HHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE--ecCCCC-----
Q psy17587 34 LVCAIVKELMKA--GYPCLSLHGGID--QYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN--YDCPNH----- 102 (231)
Q Consensus 34 ~~~~l~~~L~~~--~~~~~~lhg~~~--~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~--~d~P~~----- 102 (231)
-++.+.+.|.+. +.++..+|++++ ..++++++++|++|+++|||+|+++++|+|+|+|++|+. .|.+.+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 367788888764 789999999987 467899999999999999999999999999999998854 454443
Q ss_pred -----HhHHHHHhcccCCCCCceeEEEEecccchH
Q psy17587 103 -----YEDYVHRCGRTGRAGNKGFAYTFITLEQER 132 (231)
Q Consensus 103 -----~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~ 132 (231)
...|+|++||+||.+..|.+++.....+..
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~ 552 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHP 552 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCH
Confidence 367999999999999999999887666544
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=5.4e-12 Score=120.26 Aligned_cols=123 Identities=16% Similarity=0.214 Sum_probs=106.3
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.|..++.+.+... ..++.+||||++. ..++.++..|...|+++..+|+.+++.++..+.+.|+.|. |+|||++++
T Consensus 433 ~K~~Aii~ei~~~~~~GrpVLV~t~sv--~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAG 508 (908)
T PRK13107 433 EKYQAIIKDIKDCRERGQPVLVGTVSI--EQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAG 508 (908)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCcH--HHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcC
Confidence 3445555555433 4589999999998 7799999999999999999999999999999999999999 999999999
Q ss_pred cccCCCC--------------------------------C-----cEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEe
Q psy17587 84 RGLDVKH--------------------------------L-----NLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFI 126 (231)
Q Consensus 84 ~Gldip~--------------------------------v-----~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~ 126 (231)
||+||.= | =+||--..|.+..-=-|-.||+||.|.+|.+-.|+
T Consensus 509 RGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~l 588 (908)
T PRK13107 509 RGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYL 588 (908)
T ss_pred CCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEE
Confidence 9999872 1 17888888888888899999999999999999999
Q ss_pred cccch
Q psy17587 127 TLEQE 131 (231)
Q Consensus 127 ~~~~~ 131 (231)
+-+|.
T Consensus 589 SlED~ 593 (908)
T PRK13107 589 SMEDS 593 (908)
T ss_pred EeCcH
Confidence 87664
No 97
>KOG0950|consensus
Probab=99.32 E-value=7.9e-12 Score=118.15 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=96.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH--------------------------------------CCCCeeeccCCCCHHHH
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK--------------------------------------AGYPCLSLHGGIDQYDR 61 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~--------------------------------------~~~~~~~lhg~~~~~~R 61 (231)
+..+|+||+++ ..|+.++..+.. -.+.+.++|+|++.++|
T Consensus 460 ~~~~lvfc~sk--~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER 537 (1008)
T KOG0950|consen 460 GSSVLVFCPSK--KNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEER 537 (1008)
T ss_pred CCeEEEEcCcc--cchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchH
Confidence 56688899998 778887755421 14667899999999999
Q ss_pred HHHHHHHhCCCccEEEecCccccccCCCCCcEEEEec----CCCCHhHHHHHhcccCCCCC--ceeEEEEecccchHHHH
Q psy17587 62 DSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYD----CPNHYEDYVHRCGRTGRAGN--KGFAYTFITLEQERHAG 135 (231)
Q Consensus 62 ~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d----~P~~~~~y~qr~GR~gR~g~--~g~~i~~~~~~~~~~~~ 135 (231)
..+...|++|.+.|++||+.++.|+|+|..+++|-.. .+.+.-+|.||+|||||+|- .|.+|+.+...+.....
T Consensus 538 ~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~ 617 (1008)
T KOG0950|consen 538 EIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVR 617 (1008)
T ss_pred HHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHH
Confidence 9999999999999999999999999999999888643 23468899999999999984 69999999998876544
Q ss_pred HH
Q psy17587 136 EI 137 (231)
Q Consensus 136 ~~ 137 (231)
++
T Consensus 618 ~l 619 (1008)
T KOG0950|consen 618 EL 619 (1008)
T ss_pred HH
Confidence 33
No 98
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=9.1e-12 Score=114.51 Aligned_cols=97 Identities=24% Similarity=0.357 Sum_probs=80.6
Q ss_pred HHHHHHHHHHC--CCCeeeccCCCCHHHH--HHHHHHHhCCCccEEEecCccccccCCCCCcEEE--EecC----CC---
Q psy17587 35 VCAIVKELMKA--GYPCLSLHGGIDQYDR--DSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVV--NYDC----PN--- 101 (231)
Q Consensus 35 ~~~l~~~L~~~--~~~~~~lhg~~~~~~R--~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI--~~d~----P~--- 101 (231)
.+.+.+.|.+. +.++..+|++++...+ ..++++|++|+.+|||+|+++++|+|+|+|++|+ +.|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 56777777655 7889999999987766 8999999999999999999999999999999875 5664 32
Q ss_pred ---CHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 102 ---HYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 102 ---~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
....|+|++||+||.+..|.+++.....+.
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 256789999999999999999876654444
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.29 E-value=2.1e-11 Score=104.26 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=90.7
Q ss_pred hhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHH-HCC-CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 9 SLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELM-KAG-YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 9 ~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~-~~~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
.|..+|+... .+..++||.++. +..+++++.|. ..+ ..+.+.|+. +..|.+.++.||+|++.+|++|.+++||
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I--~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERG 368 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEI--ETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERG 368 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecch--HHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcc
Confidence 6777775444 478899999988 78999999994 334 345788875 5689999999999999999999999999
Q ss_pred cCCCCCcEEEE-e-cCCCCHhHHHHHhcccCCCCC--ceeEEEEe
Q psy17587 86 LDVKHLNLVVN-Y-DCPNHYEDYVHRCGRTGRAGN--KGFAYTFI 126 (231)
Q Consensus 86 ldip~v~~VI~-~-d~P~~~~~y~qr~GR~gR~g~--~g~~i~~~ 126 (231)
+.+|+|++.|. - ..-.+-+.++|..||+||.-. .|..+.|-
T Consensus 369 VTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 369 VTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred cccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 99999997654 2 233578899999999999864 46555443
No 100
>KOG0384|consensus
Probab=99.26 E-value=6.6e-11 Score=114.20 Aligned_cols=122 Identities=18% Similarity=0.281 Sum_probs=105.0
Q ss_pred chhhhhccccccCC-CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC---CCccEEEecCc
Q psy17587 6 PCLSLHGGIDQYDR-DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN---GKVRLLIATSV 81 (231)
Q Consensus 6 k~~~L~~~L~~~~~-~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~---g~~~vLvaT~~ 81 (231)
|+.-|=.+|.+... +.+|+||+.- +...+.|+++|...+++..-+.|.+..+-|+.+++.|.. ..+..|+||-+
T Consensus 684 KlVLLDKLL~rLk~~GHrVLIFSQM--VRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRA 761 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLKEGGHRVLIFSQM--VRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRA 761 (1373)
T ss_pred cEEeHHHHHHHHhcCCceEEEhHHH--HHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEeccc
Confidence 44444444544443 6899999994 488999999999999999999999999999999999985 45778999999
Q ss_pred cccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCc--eeEEEEeccc
Q psy17587 82 AARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNK--GFAYTFITLE 129 (231)
Q Consensus 82 ~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~--g~~i~~~~~~ 129 (231)
.+-|||+...++||.||.-|+|..=+|...||.|.|++ -.+|-|++.+
T Consensus 762 GGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 762 GGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred CcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 99999999999999999999999999999999999985 4457778766
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.25 E-value=4.9e-11 Score=118.06 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=83.9
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC------C---CCeeeccCCCCHHHHHHHHHHHhCCCc-cEEEec
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA------G---YPCLSLHGGIDQYDRDSTIVDFKNGKV-RLLIAT 79 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~------~---~~~~~lhg~~~~~~R~~~~~~F~~g~~-~vLvaT 79 (231)
|.+.+.... ..+.||||.++ .+++.+.+.|... + ..+..+||+++ ++..++++|+++.. .|+|++
T Consensus 689 l~~~l~~~~-~~KtiIF~~s~--~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsv 763 (1123)
T PRK11448 689 LAKYLDPTG-EGKTLIFAATD--AHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTV 763 (1123)
T ss_pred HHHHHhccC-CCcEEEEEcCH--HHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEe
Confidence 334443333 36777799987 7899888887642 2 24567999986 46789999999886 699999
Q ss_pred CccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCC
Q psy17587 80 SVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAG 117 (231)
Q Consensus 80 ~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g 117 (231)
+++..|+|+|.|.+||++.+|.+...|+||+||+.|..
T Consensus 764 dmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 764 DLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999964
No 102
>KOG0953|consensus
Probab=99.19 E-value=1.3e-10 Score=104.60 Aligned_cols=113 Identities=20% Similarity=0.386 Sum_probs=93.0
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHHHHHHHHHHHhC--CCccEEEecCccccc
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQYDRDSTIVDFKN--GKVRLLIATSVAARG 85 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~--g~~~vLvaT~~~~~G 85 (231)
.+++-|....++++||-|+... +-.+...+.+.|.. +.+++|++||+.|..--..|.+ ++.+||||||+.++|
T Consensus 347 ~~~~sl~nlk~GDCvV~FSkk~----I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMG 422 (700)
T KOG0953|consen 347 TALGSLSNLKPGDCVVAFSKKD----IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMG 422 (700)
T ss_pred hhhhhhccCCCCCeEEEeehhh----HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccc
Confidence 4566677788899999887744 78888888888765 9999999999999999999986 899999999999999
Q ss_pred cCCCCCcEEEEecC---------CCCHhHHHHHhcccCCCCC---ceeEEEEe
Q psy17587 86 LDVKHLNLVVNYDC---------PNHYEDYVHRCGRTGRAGN---KGFAYTFI 126 (231)
Q Consensus 86 ldip~v~~VI~~d~---------P~~~~~y~qr~GR~gR~g~---~g~~i~~~ 126 (231)
+|+ +++-||.|++ |-+.++-.|-.|||||-|. .|.+.+|-
T Consensus 423 LNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 423 LNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred ccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 998 4677777764 3468888999999999875 36555553
No 103
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.13 E-value=1.3e-10 Score=112.42 Aligned_cols=107 Identities=22% Similarity=0.435 Sum_probs=93.9
Q ss_pred CCCeEEEEcCChhHHHHHHHH----HHHHHCC----CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIV----KELMKAG----YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKH 90 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~----~~L~~~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~ 90 (231)
.+-+.++|+.++ ..++.+. ..+...+ ..+..++|+|+.++|.++...|++|+..++++|+++.-|+|+.+
T Consensus 305 ~~~~tL~F~~sr--~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ 382 (851)
T COG1205 305 NGIQTLVFFRSR--KQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGS 382 (851)
T ss_pred cCceEEEEEehh--hhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehh
Confidence 467778899987 6688886 4444444 67889999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCC-CHhHHHHHhcccCCCCCceeEEEEec
Q psy17587 91 LNLVVNYDCPN-HYEDYVHRCGRTGRAGNKGFAYTFIT 127 (231)
Q Consensus 91 v~~VI~~d~P~-~~~~y~qr~GR~gR~g~~g~~i~~~~ 127 (231)
++.||.+..|. +..++.||.||+||.++.+..+..+.
T Consensus 383 ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 383 LDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999 89999999999999997776666665
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.07 E-value=6e-10 Score=106.83 Aligned_cols=110 Identities=20% Similarity=0.350 Sum_probs=91.3
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHh----CCCccEEEecCccccccCCCC
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFK----NGKVRLLIATSVAARGLDVKH 90 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~----~g~~~vLvaT~~~~~Gldip~ 90 (231)
.....+++++|.||+. ..+..++..|+..+.++..+||.++..+|.+.++.+. .+...|+|||++.+.|+|+.
T Consensus 435 ~~~~~~~kvlvI~NTV--~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid- 511 (733)
T COG1203 435 EEVKEGKKVLVIVNTV--DRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID- 511 (733)
T ss_pred hhhccCCcEEEEEecH--HHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-
Confidence 4455678999999998 6699999999888778999999999999999888744 56889999999999999994
Q ss_pred CcEEEEecCCCCHhHHHHHhcccCCCC--CceeEEEEeccc
Q psy17587 91 LNLVVNYDCPNHYEDYVHRCGRTGRAG--NKGFAYTFITLE 129 (231)
Q Consensus 91 v~~VI~~d~P~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~ 129 (231)
.+++| .=|..+++.+||+||++|.| ..|..+.+....
T Consensus 512 fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 512 FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 45554 44555999999999999999 567777776544
No 105
>KOG4150|consensus
Probab=99.05 E-value=3.4e-10 Score=102.47 Aligned_cols=127 Identities=19% Similarity=0.220 Sum_probs=101.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC----C----CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA----G----YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKH 90 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~----~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~ 90 (231)
.+-+.|-||.++ ..|+.+....+.- + -.+..+.||...++|.++..++--|+..-+|+|++++-|||+..
T Consensus 524 ~~~R~IAFC~~R--~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~ 601 (1034)
T KOG4150|consen 524 HGLRCIAFCPSR--KLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGH 601 (1034)
T ss_pred cCCcEEEeccHH--HHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccccc
Confidence 356778899976 6687766654321 1 23567899999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEec--ccchHHHHHHHHHHHhCCCC
Q psy17587 91 LNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFIT--LEQERHAGEIIRALEASGVP 147 (231)
Q Consensus 91 v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~--~~~~~~~~~~~~~l~~~~~~ 147 (231)
.+.|+...+|.+...+.|..||+||.++...++.++. |-|+..+.--...+..++.+
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~E 660 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEE 660 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcce
Confidence 9999999999999999999999999998877766554 44666555555555544444
No 106
>KOG0947|consensus
Probab=99.04 E-value=6.2e-09 Score=98.87 Aligned_cols=118 Identities=22% Similarity=0.251 Sum_probs=88.3
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC---------------------------------------CCC
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA---------------------------------------GYP 48 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~---------------------------------------~~~ 48 (231)
..|+..|+... --.+|+||-++.+ |+.-+++|... .-.
T Consensus 556 l~lin~L~k~~-lLP~VvFvFSkkr--Cde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RG 632 (1248)
T KOG0947|consen 556 LDLINHLRKKN-LLPVVVFVFSKKR--CDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRG 632 (1248)
T ss_pred HHHHHHHhhcc-cCceEEEEEcccc--HHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhc
Confidence 34444444332 3466779988744 88888876421 112
Q ss_pred eeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecCCC---------CHhHHHHHhcccCCCCC-
Q psy17587 49 CLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPN---------HYEDYVHRCGRTGRAGN- 118 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~---------~~~~y~qr~GR~gR~g~- 118 (231)
+.++|||+=|--+.-+..-|..|-++||+||..+++|+|.|.-.+|+. .+-. .+.+|.|++|||||.|-
T Consensus 633 iaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD 711 (1248)
T KOG0947|consen 633 IAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLD 711 (1248)
T ss_pred chhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccC
Confidence 568999999999999999999999999999999999999998555543 3222 48899999999999984
Q ss_pred -ceeEEEEeccc
Q psy17587 119 -KGFAYTFITLE 129 (231)
Q Consensus 119 -~g~~i~~~~~~ 129 (231)
.|.++++....
T Consensus 712 ~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 712 ETGTVIIMCKDS 723 (1248)
T ss_pred cCceEEEEecCC
Confidence 68888777644
No 107
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.03 E-value=6.1e-10 Score=106.69 Aligned_cols=108 Identities=25% Similarity=0.407 Sum_probs=93.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVV 95 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI 95 (231)
.+.|+||.++. ..++.+.+.|.. ..+.+.++||.|+.+++.++++--..|+-+|++||++++-+|.||+|.+||
T Consensus 259 ~GdILvFLpG~--~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 259 SGSILVFLPGQ--REIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCCEEEECCcH--HHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEe
Confidence 67788899998 679999999987 457899999999999999988887778777999999999999999999999
Q ss_pred E--------ecC----------CCCHhHHHHHhcccCCCCCceeEEEEecccc
Q psy17587 96 N--------YDC----------PNHYEDYVHRCGRTGRAGNKGFAYTFITLEQ 130 (231)
Q Consensus 96 ~--------~d~----------P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~ 130 (231)
. ||+ |-+-.+..||.|||||.+ +|.||-+++.++
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 7 332 346778899999999975 799999998754
No 108
>KOG0385|consensus
Probab=99.03 E-value=1.9e-09 Score=100.37 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=103.4
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCC---ccEEEecC
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGK---VRLLIATS 80 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~---~~vLvaT~ 80 (231)
.|+..|=.+|... ..+.+|+||+.- ....+.|-.+..-.++...-+.|.++.++|...++.|.... .-.|++|-
T Consensus 471 GKm~vLDkLL~~Lk~~GhRVLIFSQm--t~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 471 GKMLVLDKLLPKLKEQGHRVLIFSQM--TRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cceehHHHHHHHHHhCCCeEEEeHHH--HHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 3555555555443 348999999984 47899999999999999999999999999999999998654 34689999
Q ss_pred ccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCcee--EEEEeccc
Q psy17587 81 VAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGF--AYTFITLE 129 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~--~i~~~~~~ 129 (231)
+++-|||+...++||.||.-|+|..-+|.+.||.|.|+... ++-+++..
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 99999999999999999999999999999999999998544 45555544
No 109
>KOG0922|consensus
Probab=98.96 E-value=1.5e-09 Score=99.72 Aligned_cols=114 Identities=23% Similarity=0.333 Sum_probs=95.2
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHC----C----CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccccc
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKA----G----YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGL 86 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~----~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gl 86 (231)
+..++..-|+||.++. +.++.+++.|... + .-+.++||.|+.+++.++++.--.|.-+|+++|++++-.+
T Consensus 253 h~~E~~GDILvFLtGq--eEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSl 330 (674)
T KOG0922|consen 253 HLTEPPGDILVFLTGQ--EEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSL 330 (674)
T ss_pred HccCCCCCEEEEeCCH--HHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeE
Confidence 3446677899999998 7789888888654 1 1246899999999999999998889999999999999999
Q ss_pred CCCCCcEEEE--------ecC----------CCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 87 DVKHLNLVVN--------YDC----------PNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 87 dip~v~~VI~--------~d~----------P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
.||.+.+||. |++ |-+-.+-.||.|||||.| +|.|+-+++..+.
T Consensus 331 TI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 331 TIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred EecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 9999999996 443 456778899999999976 7999999986653
No 110
>KOG0951|consensus
Probab=98.93 E-value=4.1e-09 Score=102.31 Aligned_cols=117 Identities=17% Similarity=0.272 Sum_probs=88.1
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHH-------------------------------------CCCCeeecc
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMK-------------------------------------AGYPCLSLH 53 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~-------------------------------------~~~~~~~lh 53 (231)
++-+.+......++||+.++ ......++.++. ..+....+|
T Consensus 537 yeKVm~~agk~qVLVFVHsR--kET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHh 614 (1674)
T KOG0951|consen 537 YEKVLEHAGKNQVLVFVHSR--KETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHH 614 (1674)
T ss_pred HHHHHHhCCCCcEEEEEEec--hHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeec
Confidence 34444444558888999876 445555554431 146678999
Q ss_pred CCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE----ecC------CCCHhHHHHHhcccCCCCC--cee
Q psy17587 54 GGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN----YDC------PNHYEDYVHRCGRTGRAGN--KGF 121 (231)
Q Consensus 54 g~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~----~d~------P~~~~~y~qr~GR~gR~g~--~g~ 121 (231)
+||+..+|..+.+-|+.|.++|||+|-.+++|+|+|.-.++|- ||+ +.++.+-+||.||+||++. .|.
T Consensus 615 AGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~ge 694 (1674)
T KOG0951|consen 615 AGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGE 694 (1674)
T ss_pred cCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCc
Confidence 9999999999999999999999999999999999998665552 664 3468999999999999985 455
Q ss_pred EEEEeccc
Q psy17587 122 AYTFITLE 129 (231)
Q Consensus 122 ~i~~~~~~ 129 (231)
.++.....
T Consensus 695 giiit~~s 702 (1674)
T KOG0951|consen 695 GIIITDHS 702 (1674)
T ss_pred eeeccCch
Confidence 55554433
No 111
>KOG0390|consensus
Probab=98.92 E-value=6.5e-09 Score=98.26 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=90.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCc--c-EEEecCccccccCCCCCcEEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKV--R-LLIATSVAARGLDVKHLNLVVN 96 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~--~-vLvaT~~~~~Gldip~v~~VI~ 96 (231)
...+++..|-+ .+.+.+.+..+-.|+.+..+||.|+..+|+++++.|.+... . .|.+|-+.+.||++-+.+-||.
T Consensus 595 ~~~~v~Isny~--~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil 672 (776)
T KOG0390|consen 595 LVKSVLISNYT--QTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL 672 (776)
T ss_pred ceEEEEeccHH--HHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE
Confidence 34555455655 66777777777779999999999999999999999986432 3 5788999999999999999999
Q ss_pred ecCCCCHhHHHHHhcccCCCCCc--eeEEEEeccc
Q psy17587 97 YDCPNHYEDYVHRCGRTGRAGNK--GFAYTFITLE 129 (231)
Q Consensus 97 ~d~P~~~~~y~qr~GR~gR~g~~--g~~i~~~~~~ 129 (231)
||++|||+.-.|.++|+-|.|++ ..+|-|++.+
T Consensus 673 ~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 673 FDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred eCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 99999999999999999999985 5556677655
No 112
>KOG0387|consensus
Probab=98.87 E-value=6.8e-09 Score=96.98 Aligned_cols=123 Identities=19% Similarity=0.264 Sum_probs=104.9
Q ss_pred CchhhhhccccccCC-CCeEEEEcCChhHHHHHHHHHHHH-HCCCCeeeccCCCCHHHHHHHHHHHhCCC-cc-EEEecC
Q psy17587 5 YPCLSLHGGIDQYDR-DSTIVDFKNGKVRLLVCAIVKELM-KAGYPCLSLHGGIDQYDRDSTIVDFKNGK-VR-LLIATS 80 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~-~~~iiiF~~~~~~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~-vLvaT~ 80 (231)
.|+..|..+|..... +.+++.|+.++ ...+.|-..|. ..|++..-+.|..+-..|...+++|.++. +. .|++|.
T Consensus 530 GKm~vl~~ll~~W~kqg~rvllFsqs~--~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTr 607 (923)
T KOG0387|consen 530 GKMKVLAKLLKDWKKQGDRVLLFSQSR--QMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTR 607 (923)
T ss_pred chHHHHHHHHHHHhhCCCEEEEehhHH--HHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEec
Confidence 467777777755544 67999999987 78999999998 58999999999999999999999999765 34 478999
Q ss_pred ccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCc-e-eEEEEeccc
Q psy17587 81 VAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNK-G-FAYTFITLE 129 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~-g-~~i~~~~~~ 129 (231)
|.+-|+|+...+-||.||+-|+|+.=.|..-|+-|.|++ . .+|-+++.+
T Consensus 608 vGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 608 VGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred ccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 999999999999999999999999999999999999985 3 345566655
No 113
>KOG0948|consensus
Probab=98.87 E-value=3.3e-09 Score=98.52 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=67.7
Q ss_pred eeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE----ecCC---C-CHhHHHHHhcccCCCCC--
Q psy17587 49 CLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN----YDCP---N-HYEDYVHRCGRTGRAGN-- 118 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~----~d~P---~-~~~~y~qr~GR~gR~g~-- 118 (231)
+..+|||+-|--++.+.--|.+|-+++|+||..++.|+|.|.-.+|.- ||-- | +.-+|+|+.|||||.|.
T Consensus 449 IGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~Dd 528 (1041)
T KOG0948|consen 449 IGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDD 528 (1041)
T ss_pred cccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCC
Confidence 457999999999999999999999999999999999999998554442 3321 1 57789999999999985
Q ss_pred ceeEEEEeccc
Q psy17587 119 KGFAYTFITLE 129 (231)
Q Consensus 119 ~g~~i~~~~~~ 129 (231)
.|.||+++...
T Consensus 529 rGivIlmiDek 539 (1041)
T KOG0948|consen 529 RGIVILMIDEK 539 (1041)
T ss_pred CceEEEEecCc
Confidence 69999998755
No 114
>KOG0952|consensus
Probab=98.86 E-value=1.6e-08 Score=96.90 Aligned_cols=114 Identities=20% Similarity=0.317 Sum_probs=86.0
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHC-----------------------CCCeeeccCCCCHHHHHHHHHHHhCCCc
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKA-----------------------GYPCLSLHGGIDQYDRDSTIVDFKNGKV 73 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~-----------------------~~~~~~lhg~~~~~~R~~~~~~F~~g~~ 73 (231)
...+..++|||.++ ...-..++.|... ......+|+||...+|......|..|.+
T Consensus 346 ~~~g~qVlvFvhsR--~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i 423 (1230)
T KOG0952|consen 346 LQEGHQVLVFVHSR--NETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHI 423 (1230)
T ss_pred HHcCCeEEEEEecC--hHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCc
Confidence 34578889999876 3344445544321 1235689999999999999999999999
Q ss_pred cEEEecCccccccCCCCCcEEEE----ecCCC------CHhHHHHHhcccCCCC--CceeEEEEecccchH
Q psy17587 74 RLLIATSVAARGLDVKHLNLVVN----YDCPN------HYEDYVHRCGRTGRAG--NKGFAYTFITLEQER 132 (231)
Q Consensus 74 ~vLvaT~~~~~Gldip~v~~VI~----~d~P~------~~~~y~qr~GR~gR~g--~~g~~i~~~~~~~~~ 132 (231)
+||+||..++.|+|+|+--+||- ||.-. +..+-+|..|||||++ ..|.++++.+.+...
T Consensus 424 ~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 424 KVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred eEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 99999999999999998444442 55443 4677899999999986 578888887665433
No 115
>KOG0920|consensus
Probab=98.86 E-value=6.1e-09 Score=100.03 Aligned_cols=119 Identities=22% Similarity=0.352 Sum_probs=99.7
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC-------CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA-------GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
..|+..|......+.|+||.++. ..+..+.+.|... .+-+..+|+.|+..+++.++..--.|.-+|+++|+
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~--~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGW--EEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCH--HHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 45666677677789999999998 6688888888632 36788999999999999999999999999999999
Q ss_pred ccccccCCCCCcEEEE--------ecCCCC----------HhHHHHHhcccCCCCCceeEEEEeccc
Q psy17587 81 VAARGLDVKHLNLVVN--------YDCPNH----------YEDYVHRCGRTGRAGNKGFAYTFITLE 129 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~--------~d~P~~----------~~~y~qr~GR~gR~g~~g~~i~~~~~~ 129 (231)
+++-.|.||+|-+||. ||+-.+ -..-.||.|||||. ..|.|+.+++..
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 9999999999999997 565443 44458999999997 479999998754
No 116
>KOG0923|consensus
Probab=98.83 E-value=8e-09 Score=94.99 Aligned_cols=123 Identities=18% Similarity=0.262 Sum_probs=94.2
Q ss_pred CCCCchhhhhccc--cccCCCCeEEEEcCChhHHHHHHHHHHHHH----C-----CCCeeeccCCCCHHHHHHHHHHHhC
Q psy17587 2 KAGYPCLSLHGGI--DQYDRDSTIVDFKNGKVRLLVCAIVKELMK----A-----GYPCLSLHGGIDQYDRDSTIVDFKN 70 (231)
Q Consensus 2 ~~~~k~~~L~~~L--~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~----~-----~~~~~~lhg~~~~~~R~~~~~~F~~ 70 (231)
+|.|-=.++...+ +...+.+-|+||..+. +.++...+.|.. . .+-+.++|+.+|...+.++++---.
T Consensus 453 EAdYldAai~tVlqIH~tqp~GDILVFltGQ--eEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~ 530 (902)
T KOG0923|consen 453 EADYLDAAIVTVLQIHLTQPLGDILVFLTGQ--EEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPP 530 (902)
T ss_pred chhHHHHHHhhheeeEeccCCccEEEEeccH--HHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCC
Confidence 3444433333333 4455678888898875 445555554432 2 4667899999999999999999999
Q ss_pred CCccEEEecCccccccCCCCCcEEEEe--------cC----------CCCHhHHHHHhcccCCCCCceeEEEEec
Q psy17587 71 GKVRLLIATSVAARGLDVKHLNLVVNY--------DC----------PNHYEDYVHRCGRTGRAGNKGFAYTFIT 127 (231)
Q Consensus 71 g~~~vLvaT~~~~~Gldip~v~~VI~~--------d~----------P~~~~~y~qr~GR~gR~g~~g~~i~~~~ 127 (231)
|.-+|++||++++-.|.|++|.+||.- ++ |-+-.+-.||.|||||.| +|.|+-+++
T Consensus 531 gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 531 GARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred CceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 999999999999999999999999963 32 445677799999999987 799999987
No 117
>KOG0392|consensus
Probab=98.78 E-value=3.1e-08 Score=96.10 Aligned_cols=108 Identities=24% Similarity=0.338 Sum_probs=94.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCC---eeeccCCCCHHHHHHHHHHHhCC-CccEE-EecCccccccCCCCCcEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYP---CLSLHGGIDQYDRDSTIVDFKNG-KVRLL-IATSVAARGLDVKHLNLV 94 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~R~~~~~~F~~g-~~~vL-vaT~~~~~Gldip~v~~V 94 (231)
+.+++|||.=+ ...+.+.+.|.+.... ...+.|..++.+|.++.++|.++ .++|| .+|-|.+-|+|+.+.+.|
T Consensus 1340 qHRiLIFcQlK--~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTV 1417 (1549)
T KOG0392|consen 1340 QHRILIFCQLK--SMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTV 1417 (1549)
T ss_pred cceeEEeeeHH--HHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceE
Confidence 46899999987 7899999999776443 44799999999999999999988 78875 778899999999999999
Q ss_pred EEecCCCCHhHHHHHhcccCCCCCcee--EEEEeccc
Q psy17587 95 VNYDCPNHYEDYVHRCGRTGRAGNKGF--AYTFITLE 129 (231)
Q Consensus 95 I~~d~P~~~~~y~qr~GR~gR~g~~g~--~i~~~~~~ 129 (231)
|.++=-|||..-+|.+-||.|-|++-. ++-+++.+
T Consensus 1418 VFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1418 VFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred EEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 999999999999999999999998644 46666665
No 118
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.70 E-value=8.2e-08 Score=91.61 Aligned_cols=122 Identities=24% Similarity=0.287 Sum_probs=97.0
Q ss_pred Cchhhhhccccc-cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC-CccEEEecCcc
Q psy17587 5 YPCLSLHGGIDQ-YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG-KVRLLIATSVA 82 (231)
Q Consensus 5 ~k~~~L~~~L~~-~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLvaT~~~ 82 (231)
.|..++.+.+.. +..++.|+|.|.+. +..+.|++.|.+.|++..++++... +++..+-. ..| .-.|.|||+.+
T Consensus 410 ~K~~Aii~ei~~~~~~gqPVLVgT~SI--e~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMA 484 (925)
T PRK12903 410 AKWKAVVKEVKRVHKKGQPILIGTAQV--EDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMA 484 (925)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcH--HHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCCeEEEecccc
Confidence 344556666654 45689999999988 7799999999999999999998744 33333322 455 45689999999
Q ss_pred ccccCCCCCc--------EEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 83 ARGLDVKHLN--------LVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 83 ~~Gldip~v~--------~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
+||.||.--. +||....|.+..---|-.||+||.|.+|.+-.|++-+|.
T Consensus 485 GRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 485 GRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred cCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 9999997322 899999999988888999999999999999888886653
No 119
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.70 E-value=1.3e-07 Score=91.98 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=103.0
Q ss_pred Cchhhhhccc-c-ccCCCC--eEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC--CccEEEe
Q psy17587 5 YPCLSLHGGI-D-QYDRDS--TIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG--KVRLLIA 78 (231)
Q Consensus 5 ~k~~~L~~~L-~-~~~~~~--~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLva 78 (231)
.|+..+.++| . ....+. ++++|++-. ...+.+...|...++....++|+++.++|...++.|.++ ..-++++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t--~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls 769 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFT--PVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLS 769 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcH--HHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEE
Confidence 4667777777 2 333355 899999966 789999999999888999999999999999999999986 4556788
Q ss_pred cCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCcee--EEEEeccc
Q psy17587 79 TSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGF--AYTFITLE 129 (231)
Q Consensus 79 T~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~--~i~~~~~~ 129 (231)
|.+++.|+|+...++||.||+.|++....|...|+.|.|+... ++-+++.+
T Consensus 770 ~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 770 LKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 8999999999999999999999999999999999999887544 45555544
No 120
>KOG0924|consensus
Probab=98.67 E-value=2.8e-08 Score=91.80 Aligned_cols=112 Identities=20% Similarity=0.301 Sum_probs=89.2
Q ss_pred cCCCCeEEEEcCChh--HHHHHHHHHHHHHC------CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCC
Q psy17587 17 YDRDSTIVDFKNGKV--RLLVCAIVKELMKA------GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDV 88 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~--~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldi 88 (231)
..+..-|+||.++.. .-+++.+.+.|.+. ++.+..+++.||..-+.++++.-..|.-+++|||++++-.+.+
T Consensus 560 ~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi 639 (1042)
T KOG0924|consen 560 SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTI 639 (1042)
T ss_pred cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceee
Confidence 334577888988741 12344555555432 6889999999999999999999989999999999999999999
Q ss_pred CCCcEEEEec------------------CCCCHhHHHHHhcccCCCCCceeEEEEeccc
Q psy17587 89 KHLNLVVNYD------------------CPNHYEDYVHRCGRTGRAGNKGFAYTFITLE 129 (231)
Q Consensus 89 p~v~~VI~~d------------------~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~ 129 (231)
|++.+||... .|-+-..--||.|||||.| +|.|+-+++..
T Consensus 640 ~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 640 PGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 9999999743 3455666789999999976 79999998753
No 121
>KOG0388|consensus
Probab=98.63 E-value=1.6e-07 Score=87.24 Aligned_cols=123 Identities=19% Similarity=0.266 Sum_probs=104.9
Q ss_pred CchhhhhccccccCC-CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCcc-EEEecCcc
Q psy17587 5 YPCLSLHGGIDQYDR-DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVR-LLIATSVA 82 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~-~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~-vLvaT~~~ 82 (231)
.|+..|=++|.+... +.++++|..- +..++.+.++|.-.++...-+.|...-.+|...+.+|...++- .|++|.+.
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQM--TkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQM--TKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHH--HHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 466677777766554 6788888884 4789999999999999999999999999999999999987655 47999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCcee--EEEEeccc
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGF--AYTFITLE 129 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~--~i~~~~~~ 129 (231)
+-|||+...+.||.||..|+|.--.|.+.||.|.|+... ++-+++.+
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 999999999999999999999999999999999998544 45555544
No 122
>KOG0389|consensus
Probab=98.60 E-value=3.5e-07 Score=85.73 Aligned_cols=122 Identities=22% Similarity=0.309 Sum_probs=102.6
Q ss_pred chhhhhccccccCC-CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCC-cc-EEEecCcc
Q psy17587 6 PCLSLHGGIDQYDR-DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGK-VR-LLIATSVA 82 (231)
Q Consensus 6 k~~~L~~~L~~~~~-~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~-vLvaT~~~ 82 (231)
|...|-.+|..... +.+|+||+. ++...+.|-..|...+++..-+.|...-.+|+..+.+|...+ +. .|++|-+.
T Consensus 762 K~r~L~~LLp~~k~~G~RVLiFSQ--FTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 762 KCRKLKELLPKIKKKGDRVLIFSQ--FTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hHhHHHHHHHHHhhcCCEEEEeeH--HHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 45555566644443 599999998 558899999999999999999999999999999999998543 44 47999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCc--eeEEEEeccc
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNK--GFAYTFITLE 129 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~--g~~i~~~~~~ 129 (231)
+-|||+...++||.+|+-.+|-.=.|.--||.|.|+. -.++-+++.+
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 9999999999999999999999999999999999974 4556677665
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.59 E-value=2.6e-07 Score=86.95 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=95.3
Q ss_pred chhhhhccccc-cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCC-ccEEEecCccc
Q psy17587 6 PCLSLHGGIDQ-YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGK-VRLLIATSVAA 83 (231)
Q Consensus 6 k~~~L~~~L~~-~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~vLvaT~~~~ 83 (231)
|..++.+.+.+ +..++.|+|.|.+. +..+.++..|.+.|+++..+++.-...| ..++. ..|. -.|.|||+.++
T Consensus 412 k~~Aii~ei~~~~~~GrPVLVgt~sI--~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAG 486 (764)
T PRK12326 412 KNDAIVEHIAEVHETGQPVLVGTHDV--AESEELAERLRAAGVPAVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAG 486 (764)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCH--HHHHHHHHHHHhCCCcceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCC
Confidence 44555555533 45689999999988 7799999999999999999998754333 22222 2343 46899999999
Q ss_pred cccCCCC----------Cc-----EEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 84 RGLDVKH----------LN-----LVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 84 ~Gldip~----------v~-----~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
||.||.- |. +||--..|.+..--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 487 RGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 487 RGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred CccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 9999872 21 789899999999999999999999999999988886654
No 124
>KOG0391|consensus
Probab=98.52 E-value=5.5e-07 Score=87.44 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=95.3
Q ss_pred chhhhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCC--ccEEEecCcc
Q psy17587 6 PCLSLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGK--VRLLIATSVA 82 (231)
Q Consensus 6 k~~~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~--~~vLvaT~~~ 82 (231)
|+.+|--+|++.. .+.+++||+.-. ...+-|-.+|.-+|+...-+.|...-++|+..+++|.... .+.+++|-..
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMt--kmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMT--KMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHH--HHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 4444444444433 378999999954 8899999999999999999999999999999999998643 5678899999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCc--eeEEEEeccc
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNK--GFAYTFITLE 129 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~--g~~i~~~~~~ 129 (231)
+.|||+...+.||.||--||+.---|.--|+.|.|+. -..|-|++..
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999999977666655555555542 3345555543
No 125
>KOG1002|consensus
Probab=98.51 E-value=4.8e-07 Score=81.19 Aligned_cols=122 Identities=23% Similarity=0.253 Sum_probs=98.8
Q ss_pred chhhhhccc---cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC-CccE-EEecC
Q psy17587 6 PCLSLHGGI---DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG-KVRL-LIATS 80 (231)
Q Consensus 6 k~~~L~~~L---~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~v-LvaT~ 80 (231)
|+.+|.+.| .+.+..-+.|||+. +....+.+.-.|.+.|++++.+-|+|++..|..+++.|++. +++| |++-.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQ--FTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQ--FTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHH--HHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 455565555 33344445566988 45789999999999999999999999999999999999865 5666 67888
Q ss_pred ccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCC--ceeEEEEeccc
Q psy17587 81 VAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGN--KGFAYTFITLE 129 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~--~g~~i~~~~~~ 129 (231)
+.+..+|+...+.|+..|+-|++..-.|...|..|.|+ +-.++.|+..+
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 99999999999999999999999999998888888886 44556666544
No 126
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.47 E-value=1.1e-06 Score=84.90 Aligned_cols=121 Identities=19% Similarity=0.178 Sum_probs=93.7
Q ss_pred chhhhhccc-cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCC-ccEEEecCccc
Q psy17587 6 PCLSLHGGI-DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGK-VRLLIATSVAA 83 (231)
Q Consensus 6 k~~~L~~~L-~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~vLvaT~~~~ 83 (231)
|..++.+.+ ..+..++.|+|-|.+. +..+.++..|.+.|++...+++.-...|- .++ -..|. -.|.|||+.++
T Consensus 553 k~~ai~~ei~~~~~~grPvLigt~si--~~se~ls~~L~~~gi~h~vLNak~~~~Ea-~ii--a~AG~~g~VTIATNmAG 627 (970)
T PRK12899 553 KYHAIVAEIASIHRKGNPILIGTESV--EVSEKLSRILRQNRIEHTVLNAKNHAQEA-EII--AGAGKLGAVTVATNMAG 627 (970)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCcH--HHHHHHHHHHHHcCCcceecccchhhhHH-HHH--HhcCCCCcEEEeecccc
Confidence 334444444 3445678899999988 78999999999999999999987432222 222 23444 56899999999
Q ss_pred cccCCCC---Cc-----EEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 84 RGLDVKH---LN-----LVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 84 ~Gldip~---v~-----~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
||.||.- |. +||.-..|.+..--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 628 RGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 628 RGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred CCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 9999872 22 788899999999999999999999999999999987664
No 127
>KOG0926|consensus
Probab=98.44 E-value=3e-07 Score=86.40 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=58.5
Q ss_pred eeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE--------ecCCCCH----------hHHHHHh
Q psy17587 49 CLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN--------YDCPNHY----------EDYVHRC 110 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~--------~d~P~~~----------~~y~qr~ 110 (231)
|..+++=++.+++.++++.--.|.-=++|+|+|++-.+.||+|.+||. ||--..+ .+--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 344455555555555555555566668999999999999999999997 4544433 3447999
Q ss_pred cccCCCCCceeEEEEecc
Q psy17587 111 GRTGRAGNKGFAYTFITL 128 (231)
Q Consensus 111 GR~gR~g~~g~~i~~~~~ 128 (231)
|||||.| +|.|+-+++.
T Consensus 687 GRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred cccCCCC-CCceeehhhh
Confidence 9999987 6999988864
No 128
>KOG0949|consensus
Probab=98.39 E-value=1.1e-06 Score=84.17 Aligned_cols=81 Identities=23% Similarity=0.285 Sum_probs=66.5
Q ss_pred eeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEec-CCCCHhHHHHHhcccCCCCC--ceeEEEE
Q psy17587 49 CLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYD-CPNHYEDYVHRCGRTGRAGN--KGFAYTF 125 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d-~P~~~~~y~qr~GR~gR~g~--~g~~i~~ 125 (231)
+.++|+||+...|..+.--||.|...||+||..++-|||.|.-.+|.--| +-.++..|.|+.|||||.|= -|.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 45899999999999999999999999999999999999999644444433 45589999999999999884 4666555
Q ss_pred eccc
Q psy17587 126 ITLE 129 (231)
Q Consensus 126 ~~~~ 129 (231)
-.|.
T Consensus 1045 giP~ 1048 (1330)
T KOG0949|consen 1045 GIPR 1048 (1330)
T ss_pred eCcH
Confidence 4443
No 129
>KOG1000|consensus
Probab=98.37 E-value=2.3e-06 Score=76.88 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=97.8
Q ss_pred Cchhhhhccccc-----cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC-CccE-EE
Q psy17587 5 YPCLSLHGGIDQ-----YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG-KVRL-LI 77 (231)
Q Consensus 5 ~k~~~L~~~L~~-----~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~v-Lv 77 (231)
-|+..+-++|.. ..+..+++|||.-. ...+.+...+..+++..+-+.|..++.+|....+.|+.. ++.| ++
T Consensus 472 aK~~av~eyi~~~~~l~d~~~~KflVFaHH~--~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvl 549 (689)
T KOG1000|consen 472 AKAAAVCEYILENYFLPDAPPRKFLVFAHHQ--IVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVL 549 (689)
T ss_pred cccHHHHHHHHhCcccccCCCceEEEEehhH--HHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEE
Confidence 455555555544 33578999999976 779999999999999999999999999999999999854 5555 56
Q ss_pred ecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCcee
Q psy17587 78 ATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGF 121 (231)
Q Consensus 78 aT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~ 121 (231)
+-.+++.|+++...+.||...+||++.-++|.-.|+.|.|++..
T Consensus 550 sItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkss 593 (689)
T KOG1000|consen 550 SITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSS 593 (689)
T ss_pred EEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccce
Confidence 77899999999999999999999999999999999999997543
No 130
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.34 E-value=1.9e-06 Score=83.63 Aligned_cols=122 Identities=18% Similarity=0.251 Sum_probs=95.7
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC-CccEEEecCcc
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG-KVRLLIATSVA 82 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLvaT~~~ 82 (231)
.|..++.+.+... ..++.|+|-|.+. +..+.|+..|...|++..++++....+|-. ++. ..| .-.|-|||+.+
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SV--e~SE~lS~~L~~~gI~H~VLNAK~h~~EAe-IVA--~AG~~GaVTIATNMA 686 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSV--EISELLSRMLKMRKIPHNVLNAKLHQKEAE-IVA--EAGQPGTVTIATNMA 686 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcH--HHHHHHHHHHHHcCCcHHHhhccchhhHHH-HHH--hcCCCCcEEEeccCc
Confidence 3455566655444 4589999999987 789999999999999999998875544332 222 233 34688999999
Q ss_pred ccccCCC---CC-----cEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 83 ARGLDVK---HL-----NLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 83 ~~Gldip---~v-----~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
+||.||. .| =+||--..|.+..---|-.||+||.|.+|.+-.|++-+|.
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9999997 22 3788899999999999999999999999999988886653
No 131
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.31 E-value=6.5e-06 Score=78.36 Aligned_cols=99 Identities=24% Similarity=0.380 Sum_probs=75.7
Q ss_pred HHHHHHHHH--CCCCeeeccCCCCHHH--HHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecC------CC----
Q psy17587 36 CAIVKELMK--AGYPCLSLHGGIDQYD--RDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDC------PN---- 101 (231)
Q Consensus 36 ~~l~~~L~~--~~~~~~~lhg~~~~~~--R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~------P~---- 101 (231)
+.+.+.|.. .+.++..+.++.+... =...+..|.+|+.+|||.|..++.|.|+|++..|...|. |.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 444444433 3678999999877544 357799999999999999999999999999998665443 22
Q ss_pred --CHhHHHHHhcccCCCCCceeEEEEecccchHHH
Q psy17587 102 --HYEDYVHRCGRTGRAGNKGFAYTFITLEQERHA 134 (231)
Q Consensus 102 --~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~ 134 (231)
...-+.|-.||+||.+.+|.+++-....+...+
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i 608 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAI 608 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHH
Confidence 255578888999999999999888776665533
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.28 E-value=1.9e-06 Score=83.00 Aligned_cols=122 Identities=20% Similarity=0.206 Sum_probs=94.9
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC-CccEEEecCcc
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG-KVRLLIATSVA 82 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLvaT~~~ 82 (231)
.|..++.+.+... ..++.|+|-|.+. +..+.|++.|...|++..++++....+|- .++. ..| .-.|.|||+.+
T Consensus 433 eK~~Ai~~ei~~~~~~GrPVLVGT~SV--e~SE~ls~~L~~~gi~h~VLNAk~~~~EA-~IIa--~AG~~GaVTIATNMA 507 (913)
T PRK13103 433 EKYAAIITDIKECMALGRPVLVGTATI--ETSEHMSNLLKKEGIEHKVLNAKYHEKEA-EIIA--QAGRPGALTIATNMA 507 (913)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCCH--HHHHHHHHHHHHcCCcHHHhccccchhHH-HHHH--cCCCCCcEEEeccCC
Confidence 3455555555443 4589999999988 78999999999999999888887543332 2222 345 45689999999
Q ss_pred ccccCCC--------------------------------CCc-----EEEEecCCCCHhHHHHHhcccCCCCCceeEEEE
Q psy17587 83 ARGLDVK--------------------------------HLN-----LVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTF 125 (231)
Q Consensus 83 ~~Gldip--------------------------------~v~-----~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~ 125 (231)
+||.||. .|. +||--..|.+..-=.|-.||+||.|.+|.+-.|
T Consensus 508 GRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 587 (913)
T PRK13103 508 GRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFY 587 (913)
T ss_pred CCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 9999994 122 788888999988889999999999999999999
Q ss_pred ecccch
Q psy17587 126 ITLEQE 131 (231)
Q Consensus 126 ~~~~~~ 131 (231)
++-+|.
T Consensus 588 lSlED~ 593 (913)
T PRK13103 588 LSLEDS 593 (913)
T ss_pred EEcCcH
Confidence 887653
No 133
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.26 E-value=7.2e-06 Score=80.30 Aligned_cols=101 Identities=23% Similarity=0.251 Sum_probs=73.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCc--E
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLN--L 93 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~--~ 93 (231)
..+++||+++. ..++.+++.|.. .++.+ +..+.. ..|.+++++|++++..||++|+.+.+|+|+|+.. +
T Consensus 674 ~g~~LVlftS~--~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~ 748 (850)
T TIGR01407 674 SPKILVLFTSY--EMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVC 748 (850)
T ss_pred CCCEEEEeCCH--HHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEE
Confidence 35677799987 679999999864 23333 333333 5788999999999999999999999999999766 5
Q ss_pred EEEecCCCC------------------------------HhHHHHHhcccCCCCC-ceeEEEE
Q psy17587 94 VVNYDCPNH------------------------------YEDYVHRCGRTGRAGN-KGFAYTF 125 (231)
Q Consensus 94 VI~~d~P~~------------------------------~~~y~qr~GR~gR~g~-~g~~i~~ 125 (231)
||...+|.. ...+.|.+||.=|..+ .|..+++
T Consensus 749 viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 749 LVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 666555531 2335788899999775 4544443
No 134
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.21 E-value=3.5e-06 Score=82.31 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=68.2
Q ss_pred eeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE----ec----CCCCHhHHHHHhcccCCCCC--c
Q psy17587 50 LSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN----YD----CPNHYEDYVHRCGRTGRAGN--K 119 (231)
Q Consensus 50 ~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~----~d----~P~~~~~y~qr~GR~gR~g~--~ 119 (231)
..+|+||=|..+..+..-|..|-+.|+++|.+++.|+|.|.-.+|+- +| -+-++.+|.|+.|||||.|- .
T Consensus 448 avHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~ 527 (1041)
T COG4581 448 AVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVL 527 (1041)
T ss_pred hhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhcccccccc
Confidence 38999999999999999999999999999999999999998655552 22 34469999999999999996 5
Q ss_pred eeEEEEecccc
Q psy17587 120 GFAYTFITLEQ 130 (231)
Q Consensus 120 g~~i~~~~~~~ 130 (231)
|.+++...+..
T Consensus 528 G~vI~~~~~~~ 538 (1041)
T COG4581 528 GTVIVIEPPFE 538 (1041)
T ss_pred ceEEEecCCCC
Confidence 88887755443
No 135
>KOG1015|consensus
Probab=98.14 E-value=7.8e-06 Score=78.36 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=100.7
Q ss_pred CchhhhhccccccCC-CCeEEEEcCChhHHHHHHHHHHHHH----------------------CCCCeeeccCCCCHHHH
Q psy17587 5 YPCLSLHGGIDQYDR-DSTIVDFKNGKVRLLVCAIVKELMK----------------------AGYPCLSLHGGIDQYDR 61 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~-~~~iiiF~~~~~~~~~~~l~~~L~~----------------------~~~~~~~lhg~~~~~~R 61 (231)
.|+..|++.|+..+. +.+++||+.+- ...+.|-.+|.. .|.....+.|..+...|
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL--~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R 1203 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSL--ISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSR 1203 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeeccc--chhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHH
Confidence 578889999987766 78999999986 557777777642 26677889999999999
Q ss_pred HHHHHHHhCCC----ccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeE--EEEec
Q psy17587 62 DSTIVDFKNGK----VRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFA--YTFIT 127 (231)
Q Consensus 62 ~~~~~~F~~g~----~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~--i~~~~ 127 (231)
.+...+|.+-. --.||+|-+.+-|+|+-..+-||.||..|+|+--.|.+=|+-|.|+.-.| |-|+.
T Consensus 1204 ~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1204 KKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred HHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 99999998642 23689999999999999999999999999999999999999999985444 44444
No 136
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.07 E-value=1.8e-05 Score=62.59 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=55.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCC----CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC--ccccccCCCC--C
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAG----YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS--VAARGLDVKH--L 91 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~--~~~~Gldip~--v 91 (231)
+..++||+++. ...+.+.+.+.... +.+. .. +..++...++.|+.+.-.||+++. .+.+|+|+|+ +
T Consensus 9 ~g~~lv~f~Sy--~~l~~~~~~~~~~~~~~~~~v~-~q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 9 PGGVLVFFPSY--RRLEKVYERLKERLEEKGIPVF-VQ---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp SSEEEEEESSH--HHHHHHHTT-TSS-E-ETSCEE-ES---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHhhcccccceee-ec---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 37777899988 67999999886543 3332 22 355788999999999999999999 9999999995 7
Q ss_pred cEEEEecCCC
Q psy17587 92 NLVVNYDCPN 101 (231)
Q Consensus 92 ~~VI~~d~P~ 101 (231)
+.||...+|.
T Consensus 83 r~vii~glPf 92 (167)
T PF13307_consen 83 RAVIIVGLPF 92 (167)
T ss_dssp EEEEEES---
T ss_pred heeeecCCCC
Confidence 7899888774
No 137
>KOG1123|consensus
Probab=97.99 E-value=3.5e-05 Score=69.60 Aligned_cols=107 Identities=21% Similarity=0.366 Sum_probs=81.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHh-CCCccEEEecCccccccCCCCCcEEEEe
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFK-NGKVRLLIATSVAARGLDVKHLNLVVNY 97 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~-~g~~~vLvaT~~~~~Gldip~v~~VI~~ 97 (231)
.+.+||||..+. -.|-++-.+.|. -+++|..++.||.++++.|+ +..++.++-+.++.-.+|+|..+++|+.
T Consensus 542 RgDKiIVFsDnv-----fALk~YAikl~K--pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQI 614 (776)
T KOG1123|consen 542 RGDKIIVFSDNV-----FALKEYAIKLGK--PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQI 614 (776)
T ss_pred cCCeEEEEeccH-----HHHHHHHHHcCC--ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEE
Confidence 578999999864 344444333332 37899999999999999998 6789999999999999999999999997
Q ss_pred cCCC-CHhHHHHHhcccCCCCC------ceeEEEEecccchH
Q psy17587 98 DCPN-HYEDYVHRCGRTGRAGN------KGFAYTFITLEQER 132 (231)
Q Consensus 98 d~P~-~~~~y~qr~GR~gR~g~------~g~~i~~~~~~~~~ 132 (231)
..-. +-.+-.||.||.-|+.+ ...-+++++.+..+
T Consensus 615 SSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 615 SSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred cccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 6654 45667899999988743 23445666655443
No 138
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.95 E-value=1.9e-05 Score=76.32 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=71.4
Q ss_pred hhhhhccccccCCCCeEEEEcCC-hhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEec----Cc
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNG-KVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIAT----SV 81 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~-~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT----~~ 81 (231)
+..+.++++... ...|||++. .-++.++.|+++|+..|+++..+|++ ..+.++.|..|++++||.. .+
T Consensus 324 ~e~~~elvk~lG--~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~ 396 (1187)
T COG1110 324 LEKVVELVKKLG--DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGV 396 (1187)
T ss_pred HHHHHHHHHHhC--CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccc
Confidence 445566667664 355668886 22378999999999999999999983 3778999999999999885 58
Q ss_pred cccccCCC-CCcEEEEecCCC
Q psy17587 82 AARGLDVK-HLNLVVNYDCPN 101 (231)
Q Consensus 82 ~~~Gldip-~v~~VI~~d~P~ 101 (231)
+.||+|+| -+.++|.|++|.
T Consensus 397 lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 397 LVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred eeecCCchhheeEEEEecCCc
Confidence 99999999 567999999994
No 139
>KOG0386|consensus
Probab=97.95 E-value=2.6e-05 Score=75.16 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=94.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCcc---EEEecCccccccCCCCCcEEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVR---LLIATSVAARGLDVKHLNLVVN 96 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~---vLvaT~~~~~Gldip~v~~VI~ 96 (231)
+.+|+.||.-. ...+.+..+|.-.++....+.|....++|-..+..|...+.. .|.+|.+.+.|+|+.-.+.||.
T Consensus 726 gHRVLlF~qMT--rlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii 803 (1157)
T KOG0386|consen 726 GHRVLLFSQMT--RLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII 803 (1157)
T ss_pred CcchhhHHHHH--HHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE
Confidence 78999999965 779999999999999999999999999999999999976543 5789999999999999999999
Q ss_pred ecCCCCHhHHHHHhcccCCCCCceeEEEEec
Q psy17587 97 YDCPNHYEDYVHRCGRTGRAGNKGFAYTFIT 127 (231)
Q Consensus 97 ~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~ 127 (231)
||.-|++....|+--|+.|.|+...+-++..
T Consensus 804 fdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 804 FDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred ecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 9999999999999999999998655544443
No 140
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.94 E-value=7.3e-05 Score=72.03 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=58.4
Q ss_pred chhhhhccc-cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHH-HHHHHHHhCC-CccEEEecCcc
Q psy17587 6 PCLSLHGGI-DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDR-DSTIVDFKNG-KVRLLIATSVA 82 (231)
Q Consensus 6 k~~~L~~~L-~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~~g-~~~vLvaT~~~ 82 (231)
|..++.+.+ ..+..++.|+|-|.+. +..+.+++.|...|++..++++.-...++ ..++.+ .| .-.|.|||+.+
T Consensus 409 K~~AI~~ei~~~~~~grPVLIgT~SI--e~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMA 484 (870)
T CHL00122 409 KWRAIADECLQMHQTGRPILIGTTTI--EKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMA 484 (870)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeeCCH--HHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCCcEEEecccc
Confidence 334444443 4455689999999988 77999999999999999999986322222 233333 34 45689999999
Q ss_pred ccccCCC
Q psy17587 83 ARGLDVK 89 (231)
Q Consensus 83 ~~Gldip 89 (231)
+||.||.
T Consensus 485 GRGTDI~ 491 (870)
T CHL00122 485 GRGTDII 491 (870)
T ss_pred CCCcCee
Confidence 9999975
No 141
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.93 E-value=0.00013 Score=69.75 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=76.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHC-----CCCeeeccCCCCHH---------------------HHHHHHHHHhC-CCc
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKA-----GYPCLSLHGGIDQY---------------------DRDSTIVDFKN-GKV 73 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~---------------------~R~~~~~~F~~-g~~ 73 (231)
.+..|||.++ ..|..+.+.|... +.....+++..+.. .....+++|++ +.+
T Consensus 515 ~kamvv~~sr--~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~ 592 (667)
T TIGR00348 515 FKAMVVAISR--YACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENP 592 (667)
T ss_pred CceeEEEecH--HHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCc
Confidence 5566699987 7798888887553 24556677664433 12468888976 689
Q ss_pred cEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCC-C--C-ceeEEEEecc
Q psy17587 74 RLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRA-G--N-KGFAYTFITL 128 (231)
Q Consensus 74 ~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~-g--~-~g~~i~~~~~ 128 (231)
+|||+++.+..|.|.|.+++++..-+-. ...++|.+||+.|. . + .|..+-|+..
T Consensus 593 ~ilIVvdmllTGFDaP~l~tLyldKplk-~h~LlQai~R~nR~~~~~K~~g~IvDy~g~ 650 (667)
T TIGR00348 593 KLLIVVDMLLTGFDAPILNTLYLDKPLK-YHGLLQAIARTNRIDGKDKTFGLIVDYRGL 650 (667)
T ss_pred eEEEEEcccccccCCCccceEEEecccc-ccHHHHHHHHhccccCCCCCCEEEEECcCh
Confidence 9999999999999999998776655444 45689999999994 3 2 3556555543
No 142
>KOG4439|consensus
Probab=97.83 E-value=0.00016 Score=67.72 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=88.3
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHh--CCCccE-EEecCccccccCCCCCcE
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFK--NGKVRL-LIATSVAARGLDVKHLNL 93 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~--~g~~~v-LvaT~~~~~Gldip~v~~ 93 (231)
...+.++||...=. ...+.+...|.+.|+....+||.....+|+.+++.|. +|..+| |++-.+.+.|+|+-..++
T Consensus 743 ~~skeK~viVSQwt--svLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNH 820 (901)
T KOG4439|consen 743 TSSKEKVVIVSQWT--SVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANH 820 (901)
T ss_pred hcccceeeehhHHH--HHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccce
Confidence 44567777665533 4578888899999999999999999999999999996 455666 577788999999999999
Q ss_pred EEEecCCCCHhHHHHHhcccCCCCCceeE
Q psy17587 94 VVNYDCPNHYEDYVHRCGRTGRAGNKGFA 122 (231)
Q Consensus 94 VI~~d~P~~~~~y~qr~GR~gR~g~~g~~ 122 (231)
+|..|+-|++.---|.+.|..|.|++-.+
T Consensus 821 lilvDlHWNPaLEqQAcDRIYR~GQkK~V 849 (901)
T KOG4439|consen 821 LILVDLHWNPALEQQACDRIYRMGQKKDV 849 (901)
T ss_pred EEEEecccCHHHHHHHHHHHHHhcccCce
Confidence 99999999999999999999999986444
No 143
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.72 E-value=0.00084 Score=60.70 Aligned_cols=127 Identities=12% Similarity=0.115 Sum_probs=98.8
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc--cccccC
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV--AARGLD 87 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~--~~~Gld 87 (231)
++..|.+....+.++||+++... --.|-++|.+.+++...+|--.++.+-.++-..|..|+.+||+.|.= +=+=..
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfD--fVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ 367 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFD--FVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYR 367 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhh--hHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhce
Confidence 34444433446788889999733 66788889999999999999999999999999999999999999972 334455
Q ss_pred CCCCcEEEEecCCCCHhHHHHHhcccCCCCC------ceeEEEEecccchHHHHHHH
Q psy17587 88 VKHLNLVVNYDCPNHYEDYVHRCGRTGRAGN------KGFAYTFITLEQERHAGEII 138 (231)
Q Consensus 88 ip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~------~g~~i~~~~~~~~~~~~~~~ 138 (231)
+.++..||.|.+|.++.-|...+.-.+.... .+.|.++++.-|.-.++.++
T Consensus 368 irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 368 IRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred ecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 7788999999999999999887755554432 57888888887776555443
No 144
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00025 Score=67.55 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=74.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCCHHHHHHHHHHHhCCCc-cEEEecCccccccCCCC--CcEEEE
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGIDQYDRDSTIVDFKNGKV-RLLIATSVAARGLDVKH--LNLVVN 96 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~~~~R~~~~~~F~~g~~-~vLvaT~~~~~Gldip~--v~~VI~ 96 (231)
++++||+++. +.++.+.+.+..... .....+|..+ +...++.|+.+.- -++|+|..+.+|+|+|+ ++.||.
T Consensus 480 ~~~lvlF~Sy--~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 480 GGVLVLFPSY--EYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred CCEEEEeccH--HHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 3677788887 679999999976554 2455665544 4478888886555 89999999999999994 467887
Q ss_pred ecCCCC------------------------------HhHHHHHhcccCCCCC-ceeEEEEec
Q psy17587 97 YDCPNH------------------------------YEDYVHRCGRTGRAGN-KGFAYTFIT 127 (231)
Q Consensus 97 ~d~P~~------------------------------~~~y~qr~GR~gR~g~-~g~~i~~~~ 127 (231)
..+|.. .....|.+||+=|... .|..+++-.
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 666642 4456899999999654 466655533
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=97.63 E-value=4.3e-05 Score=73.06 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=78.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHHH-----------H--CCC--CeeeccCCCCHHHHHHHHH---HHhCCCccEEEecCcc
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELM-----------K--AGY--PCLSLHGGIDQYDRDSTIV---DFKNGKVRLLIATSVA 82 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~-----------~--~~~--~~~~lhg~~~~~~R~~~~~---~F~~g~~~vLvaT~~~ 82 (231)
++.|-||.+. .+..++++.+. + .++ ++-...|.|.-.+|..... .|...+++||--..++
T Consensus 461 ~RAIaF~k~I--~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcL 538 (1518)
T COG4889 461 QRAIAFAKDI--KTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCL 538 (1518)
T ss_pred HHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhh
Confidence 5666788875 45555555432 2 234 4445667899888854443 2556788999999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCC---CceeEEEEec
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAG---NKGFAYTFIT 127 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g---~~g~~i~~~~ 127 (231)
++|+|+|..+.||.+|+..+.-+.+|.+||+.|-. ..|..|+-+.
T Consensus 539 SEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 539 SEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred hcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 99999999999999999999999999999999954 2577776654
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.61 E-value=0.00042 Score=68.60 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=70.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHCCC--CeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCC--CcEEEE
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKAGY--PCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKH--LNLVVN 96 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~--v~~VI~ 96 (231)
+.++||.++. ...+.+++.|..... ....+.-+++...|.+.++.|++++-.||++|..+.+|+|+|+ +++||.
T Consensus 753 g~~LVLFtSy--~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 753 GRMLVLFTSY--EMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCEEEEECCH--HHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 4555566666 668888888865422 1222222444456888999999988899999999999999995 467877
Q ss_pred ecCCC----C--------------------------HhHHHHHhcccCCCCC-ceeEEEE
Q psy17587 97 YDCPN----H--------------------------YEDYVHRCGRTGRAGN-KGFAYTF 125 (231)
Q Consensus 97 ~d~P~----~--------------------------~~~y~qr~GR~gR~g~-~g~~i~~ 125 (231)
..+|. + ...+.|-+||.=|... .|..+++
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~il 890 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVL 890 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEe
Confidence 66553 2 2234777889888765 4544333
No 147
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=97.57 E-value=5.5e-05 Score=50.27 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCCcHHHHHHHHhhHHHHHhHHHH-HHHHHHh
Q psy17587 190 IIRALEASGVPIPEDLDKILAEGLVWLRDYKQR-VDQRIAR 229 (231)
Q Consensus 190 ~~~~l~~~~~~~~~~l~~~~~~~~s~~r~y~~~-~~~~i~~ 229 (231)
++..++.....+++..+.+.++++||+|+|..| +.+.||+
T Consensus 2 iq~~l~~~~~~d~~l~~lA~~Af~SyvraY~~~~~~k~iF~ 42 (65)
T PF13959_consen 2 IQQKLEKLVAKDRELKELAQKAFVSYVRAYASHKELKDIFN 42 (65)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhCC
Confidence 456777777778888999999999999999999 8899986
No 148
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.57 E-value=0.00044 Score=58.85 Aligned_cols=80 Identities=20% Similarity=0.388 Sum_probs=61.6
Q ss_pred HHHHHHhCCCccEEEecCccccccCCCC--------CcEEEEecCCCCHhHHHHHhcccCCCCCc-eeEEEEecc---cc
Q psy17587 63 STIVDFKNGKVRLLIATSVAARGLDVKH--------LNLVVNYDCPNHYEDYVHRCGRTGRAGNK-GFAYTFITL---EQ 130 (231)
Q Consensus 63 ~~~~~F~~g~~~vLvaT~~~~~Gldip~--------v~~VI~~d~P~~~~~y~qr~GR~gR~g~~-g~~i~~~~~---~~ 130 (231)
...+.|.+|+..|+|.|++++.|+-+.+ -++-|...+||+.+..+|..||+.|.|+. ...+.++.. .|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4566899999999999999999998873 23667789999999999999999999973 445555543 35
Q ss_pred hHHHHHHHHHHH
Q psy17587 131 ERHAGEIIRALE 142 (231)
Q Consensus 131 ~~~~~~~~~~l~ 142 (231)
...+..+.+.|.
T Consensus 132 ~Rfas~va~rL~ 143 (278)
T PF13871_consen 132 RRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
No 149
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.52 E-value=0.00043 Score=66.03 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=79.2
Q ss_pred hhhccccc--cCC-CCeEEEEcCChhHHHHHHHHHHHHHC-----CCCeeeccCCCCHHHHHHHHHHHhC--CCccEEEe
Q psy17587 9 SLHGGIDQ--YDR-DSTIVDFKNGKVRLLVCAIVKELMKA-----GYPCLSLHGGIDQYDRDSTIVDFKN--GKVRLLIA 78 (231)
Q Consensus 9 ~L~~~L~~--~~~-~~~iiiF~~~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~vLva 78 (231)
.|.+.|+. ... -.+.||||.+. .+++.+...|... |--+..+.|+-. +-+..+..|.. .-.+|.|+
T Consensus 412 ~~~~~l~~~~~g~~~~KTIvFa~n~--dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~Iait 487 (875)
T COG4096 412 ELTEYLKRGATGDEIGKTIVFAKNH--DHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAIT 487 (875)
T ss_pred HHHHHhccccCCCccCceEEEeeCc--HHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEe
Confidence 44555555 332 35667799988 8899999999754 233667777644 33445666653 45779999
Q ss_pred cCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCC
Q psy17587 79 TSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRA 116 (231)
Q Consensus 79 T~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~ 116 (231)
.+.+.-|+|+|.|..+|.+-.-.+..-|-|++||.=|.
T Consensus 488 vdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 488 VDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999998775
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.49 E-value=0.0013 Score=63.26 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=53.4
Q ss_pred eEEEEcCChhHHHHHHHHHHHHHC-CCCeeeccCCCCHHHHHHHHHHHh----CCCccEEEecCccccccCCCC--CcEE
Q psy17587 22 TIVDFKNGKVRLLVCAIVKELMKA-GYPCLSLHGGIDQYDRDSTIVDFK----NGKVRLLIATSVAARGLDVKH--LNLV 94 (231)
Q Consensus 22 ~iiiF~~~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~----~g~~~vLvaT~~~~~Gldip~--v~~V 94 (231)
.++||.++. ...+.+++.|... +.. +..+|.. .+...++.|+ .++-.||++|..+.+|||+|+ +++|
T Consensus 536 g~LVlFtSy--~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 536 GSLVLFASR--RQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CEEEEeCcH--HHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 356677766 6688998888643 333 4556643 4667787776 467789999999999999995 6788
Q ss_pred EEecCCC
Q psy17587 95 VNYDCPN 101 (231)
Q Consensus 95 I~~d~P~ 101 (231)
|...+|.
T Consensus 610 II~kLPF 616 (697)
T PRK11747 610 IITKIPF 616 (697)
T ss_pred EEEcCCC
Confidence 8766553
No 151
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.44 E-value=0.0018 Score=63.34 Aligned_cols=101 Identities=17% Similarity=0.120 Sum_probs=69.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCC--CCcEEEEe
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVK--HLNLVVNY 97 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip--~v~~VI~~ 97 (231)
+++++|+.+|. +..+.+++.|....+.+ ...|.-. .+.+.+++|++++-.||++|..+.+|+|+| +...||..
T Consensus 647 ~g~~LVLFtS~--~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 647 QQPILVLFNSK--KHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred CCCEEEEECcH--HHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 45555566666 66888888887655554 4445322 245689999999889999999999999998 34555554
Q ss_pred cCC----CC--------------------------HhHHHHHhcccCCCCC-ceeEEEE
Q psy17587 98 DCP----NH--------------------------YEDYVHRCGRTGRAGN-KGFAYTF 125 (231)
Q Consensus 98 d~P----~~--------------------------~~~y~qr~GR~gR~g~-~g~~i~~ 125 (231)
-+| .+ ...+.|-+||.=|... .|..+++
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 444 22 2335788899888765 5755444
No 152
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.42 E-value=0.00029 Score=68.37 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=36.5
Q ss_pred EecCccccccCCCC----------------------C----------cEEEEecCCCCHhHHHH--HhcccCCCCCceeE
Q psy17587 77 IATSVAARGLDVKH----------------------L----------NLVVNYDCPNHYEDYVH--RCGRTGRAGNKGFA 122 (231)
Q Consensus 77 vaT~~~~~Gldip~----------------------v----------~~VI~~d~P~~~~~y~q--r~GR~gR~g~~g~~ 122 (231)
|+|.+...|+|+|. + ++||.|++-.+...-+| |.||.||. +.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~---~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP---LRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC---cEE
Confidence 77888999999997 5 89999997766666666 66665554 566
Q ss_pred EEEecc
Q psy17587 123 YTFITL 128 (231)
Q Consensus 123 i~~~~~ 128 (231)
+.++..
T Consensus 508 yfL~y~ 513 (814)
T TIGR00596 508 YFLYYG 513 (814)
T ss_pred EEEEEC
Confidence 666643
No 153
>KOG0925|consensus
Probab=97.42 E-value=0.00034 Score=63.21 Aligned_cols=108 Identities=18% Similarity=0.312 Sum_probs=78.0
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHC---------CCCeeeccCCCCHHHHHHHHHHHh---CC--CccEEEecC
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKA---------GYPCLSLHGGIDQYDRDSTIVDFK---NG--KVRLLIATS 80 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~~~~F~---~g--~~~vLvaT~ 80 (231)
...+..+-|++|..+. +.++..++.+... ..+|..+| +.++..+++-.. +| .-+|+|+|+
T Consensus 248 h~~ee~GDilvFLtge--eeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstn 321 (699)
T KOG0925|consen 248 HMCEEPGDILVFLTGE--EEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTN 321 (699)
T ss_pred HhccCCCCEEEEecCH--HHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEec
Confidence 4444567788899886 5577777766421 47888999 444454444332 22 357999999
Q ss_pred ccccccCCCCCcEEEEec------------------CCCCHhHHHHHhcccCCCCCceeEEEEeccc
Q psy17587 81 VAARGLDVKHLNLVVNYD------------------CPNHYEDYVHRCGRTGRAGNKGFAYTFITLE 129 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d------------------~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~ 129 (231)
+++-.+.++.|.+||.-. .|-+..+-.||.||+||. ++|.|+-+++..
T Consensus 322 iaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 322 IAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred chheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999999999999999733 255677788999999985 579999998744
No 154
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.32 E-value=0.0042 Score=47.74 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=45.9
Q ss_pred HHHHHHHHHHCCC------CeeeccCCCCHHHHHHHHHHHhCCC-ccEEEecCccccccCCCC--CcEEEEecCCC
Q psy17587 35 VCAIVKELMKAGY------PCLSLHGGIDQYDRDSTIVDFKNGK-VRLLIATSVAARGLDVKH--LNLVVNYDCPN 101 (231)
Q Consensus 35 ~~~l~~~L~~~~~------~~~~lhg~~~~~~R~~~~~~F~~g~-~~vLvaT~~~~~Gldip~--v~~VI~~d~P~ 101 (231)
.+.+...+...+. .-..+.-+.+..+...+++.|+... ..||++|.-+.+|+|+|+ ++.||...+|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 4555555554443 1233444455656789999998654 379999988999999995 45788777664
No 155
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.29 E-value=0.0015 Score=63.41 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=58.8
Q ss_pred chhhhhccccc-cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCC-CCHHHHHHHHHHHhCCC-ccEEEecCcc
Q psy17587 6 PCLSLHGGIDQ-YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGG-IDQYDRDSTIVDFKNGK-VRLLIATSVA 82 (231)
Q Consensus 6 k~~~L~~~L~~-~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~-~~~~~R~~~~~~F~~g~-~~vLvaT~~~ 82 (231)
|..++.+.+.. +..++.|+|-|.+. +..+.+++.|...|+++.++++. ...+.=..++.+ .|. -.|-|||+.+
T Consensus 424 K~~Ai~~ei~~~~~~GrPVLIgT~SV--e~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMA 499 (939)
T PRK12902 424 KWRAVANETAEMHKQGRPVLVGTTSV--EKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMA 499 (939)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCH--HHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCC
Confidence 44455555543 45689999999988 78999999999999999999986 222222233333 443 4688999999
Q ss_pred ccccCCC
Q psy17587 83 ARGLDVK 89 (231)
Q Consensus 83 ~~Gldip 89 (231)
+||.||.
T Consensus 500 GRGTDIk 506 (939)
T PRK12902 500 GRGTDII 506 (939)
T ss_pred CCCcCEe
Confidence 9999876
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.19 E-value=0.0014 Score=64.45 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=60.1
Q ss_pred HHHHHHHHHHH----CC--CCeeeccCCCCHHHHHHHHHHH----------------------hC----CCccEEEecCc
Q psy17587 34 LVCAIVKELMK----AG--YPCLSLHGGIDQYDRDSTIVDF----------------------KN----GKVRLLIATSV 81 (231)
Q Consensus 34 ~~~~l~~~L~~----~~--~~~~~lhg~~~~~~R~~~~~~F----------------------~~----g~~~vLvaT~~ 81 (231)
.+-.+++.|.. .+ +.+.++|+..+...|..+.+.. .+ +...|+|+|++
T Consensus 768 p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv 847 (1110)
T TIGR02562 768 PLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPV 847 (1110)
T ss_pred HHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeee
Confidence 35555665543 23 4577899999888887766553 11 35689999999
Q ss_pred cccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCC
Q psy17587 82 AARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGN 118 (231)
Q Consensus 82 ~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~ 118 (231)
.+.|+|+. .+++ +.-|.+..+.+|++||+.|.+.
T Consensus 848 ~E~g~D~d-fd~~--~~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 848 EEVGRDHD-YDWA--IADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred EEEEeccc-CCee--eeccCcHHHHHHHhhccccccc
Confidence 99999983 3444 4456779999999999999875
No 157
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.14 E-value=0.0052 Score=47.22 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=43.9
Q ss_pred HHHHHHHHHHCCC----CeeeccCCCCHHHHHHHHHHHhCCCc---cEEEecCc--cccccCCCC--CcEEEEecCCC
Q psy17587 35 VCAIVKELMKAGY----PCLSLHGGIDQYDRDSTIVDFKNGKV---RLLIATSV--AARGLDVKH--LNLVVNYDCPN 101 (231)
Q Consensus 35 ~~~l~~~L~~~~~----~~~~lhg~~~~~~R~~~~~~F~~g~~---~vLvaT~~--~~~Gldip~--v~~VI~~d~P~ 101 (231)
.+.+.+.+...+. .....-+ ....+....++.|++..- .||+++.- +++|+|+|+ ++.||...+|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEG-KDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEEC-CCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 5566666655432 2223323 333355788999987544 68888877 999999996 56888877774
No 158
>KOG1016|consensus
Probab=97.00 E-value=0.0034 Score=59.76 Aligned_cols=134 Identities=17% Similarity=0.186 Sum_probs=99.9
Q ss_pred CCCCchhhhhccccccCC-CCeEEEEcCChhHHHHHHHHHHHHHC------------------CCCeeeccCCCCHHHHH
Q psy17587 2 KAGYPCLSLHGGIDQYDR-DSTIVDFKNGKVRLLVCAIVKELMKA------------------GYPCLSLHGGIDQYDRD 62 (231)
Q Consensus 2 ~~~~k~~~L~~~L~~~~~-~~~iiiF~~~~~~~~~~~l~~~L~~~------------------~~~~~~lhg~~~~~~R~ 62 (231)
+.|+|+..+++.+...-. +.++|+|+.+. ...+.|-+.|.+. +.+..-+.|..+..+|.
T Consensus 700 en~pk~V~~~~~~des~~~g~kil~fSq~l--~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~re 777 (1387)
T KOG1016|consen 700 ENGPKIVISLEILDESTQIGEKILIFSQNL--TALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADRE 777 (1387)
T ss_pred cCCCceEEEEeeeccccccCceEEEeecch--hHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHH
Confidence 457888888888865544 78999999886 3466666666543 23344678888899999
Q ss_pred HHHHHHhCC--Cc-cEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHH
Q psy17587 63 STIVDFKNG--KV-RLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEI 137 (231)
Q Consensus 63 ~~~~~F~~g--~~-~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~ 137 (231)
+.+++|.+- -. -+|++|....-|+|+=..+-+|.||.-|++---.|.+-|+-|.|+...|+++-.-.+....+++
T Consensus 778 kLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 778 KLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred HHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 999999853 22 4678999999999999889999999999998888988999999986566554433333333333
No 159
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.96 E-value=0.0028 Score=60.87 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=68.1
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-cc
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-AA 83 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-~~ 83 (231)
.++-.+.....+.+++|.++++ ..+.+.++.+.. .|+++..+||+++..+|...+....+|+.+|+|+|.. +.
T Consensus 299 a~~~il~~~~~g~q~lilaPT~--~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~ 376 (681)
T PRK10917 299 AALAALAAIEAGYQAALMAPTE--ILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ 376 (681)
T ss_pred HHHHHHHHHHcCCeEEEEeccH--HHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc
Confidence 3334444445567888889987 778888777654 3789999999999999999999999999999999975 44
Q ss_pred cccCCCCCcEEEE
Q psy17587 84 RGLDVKHLNLVVN 96 (231)
Q Consensus 84 ~Gldip~v~~VI~ 96 (231)
..+.++++.+||.
T Consensus 377 ~~v~~~~l~lvVI 389 (681)
T PRK10917 377 DDVEFHNLGLVII 389 (681)
T ss_pred ccchhcccceEEE
Confidence 4577888888775
No 160
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.70 E-value=0.0023 Score=61.66 Aligned_cols=123 Identities=22% Similarity=0.229 Sum_probs=84.3
Q ss_pred CCchhhhhcccc-ccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 4 GYPCLSLHGGID-QYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 4 ~~k~~~L~~~L~-~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
..|..++++.+. .+..++.++|-+.+. +..+.+++.|.+.|++...+...-. ++..-+-.+.-..-.|-|||+.+
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~si--e~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMA 487 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSI--EKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMA 487 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcce--ecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCccccccccc
Confidence 345556666664 444689999899987 7799999999999999988888766 33333333332234578999999
Q ss_pred ccccCCCCCc-----------EEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccc
Q psy17587 83 ARGLDVKHLN-----------LVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQ 130 (231)
Q Consensus 83 ~~Gldip~v~-----------~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~ 130 (231)
+||-||.--. +||--.--.+-.-=.|-.||+||.|-+|.+-.|++-.+
T Consensus 488 GRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 488 GRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred cCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 9999986222 23332222222222477799999999999877776544
No 161
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.56 E-value=0.011 Score=56.88 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=63.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH-CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEe
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK-AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNY 97 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~ 97 (231)
.+++++|.++++ ..+.++.+.|.. .|..+..+||+++..+|...+.+..+|+.+|+|+|..+.. +.++++.+||.-
T Consensus 189 ~g~~vLvLvPt~--~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEI--ALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcH--HHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEE
Confidence 467888899987 779999999976 3788999999999999999999999999999999975432 556678877754
Q ss_pred c
Q psy17587 98 D 98 (231)
Q Consensus 98 d 98 (231)
+
T Consensus 266 E 266 (679)
T PRK05580 266 E 266 (679)
T ss_pred C
Confidence 3
No 162
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.55 E-value=0.023 Score=54.81 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=55.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCC-------CeeeccCCCCHHHHHHHHHHHhC----CCccEEEec--Ccccccc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGY-------PCLSLHGGIDQYDRDSTIVDFKN----GKVRLLIAT--SVAARGL 86 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~-------~~~~lhg~~~~~~R~~~~~~F~~----g~~~vLvaT--~~~~~Gl 86 (231)
.+.++||.++. ...+.+.+.+...+. ..++.-+. ...++..++++|+. |.-.||+|+ ..+++||
T Consensus 522 pgg~lvfFpSy--~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGI 598 (705)
T TIGR00604 522 PDGIVVFFPSY--SYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGI 598 (705)
T ss_pred CCcEEEEccCH--HHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcc
Confidence 35666688887 668888887765321 22222221 22578889999964 455699998 8899999
Q ss_pred CCCC--CcEEEEecCCC
Q psy17587 87 DVKH--LNLVVNYDCPN 101 (231)
Q Consensus 87 dip~--v~~VI~~d~P~ 101 (231)
|+++ ++.||...+|.
T Consensus 599 Df~~~~~r~ViivGlPf 615 (705)
T TIGR00604 599 DFCDDLGRAVIMVGIPY 615 (705)
T ss_pred ccCCCCCcEEEEEccCC
Confidence 9995 67888888875
No 163
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.46 E-value=0.014 Score=54.13 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=62.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC-CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEe
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA-GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNY 97 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~ 97 (231)
.+++++|.+++. ..+.++.+.|+.. +..+..+||+++..+|...+.+..+|+.+|+|+|..+.- ..++++.+||.-
T Consensus 24 ~g~~vLvlvP~i--~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEI--ALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcH--HHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 467788889987 7789999998754 778999999999999999999999999999999976432 456677877753
No 164
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.37 E-value=0.0094 Score=56.77 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=67.4
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc-
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA- 83 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~- 83 (231)
.++-.+.....+.++++.++++ ..+.++++.+.+ .|+++..+||+++..+|...++...+|+.+|+|+|...-
T Consensus 273 a~l~il~~~~~g~qvlilaPT~--~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~ 350 (630)
T TIGR00643 273 AALAMLAAIEAGYQVALMAPTE--ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ 350 (630)
T ss_pred HHHHHHHHHHcCCcEEEECCHH--HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh
Confidence 3344444445567788889977 778888877654 379999999999999999999999999999999998644
Q ss_pred cccCCCCCcEEEE
Q psy17587 84 RGLDVKHLNLVVN 96 (231)
Q Consensus 84 ~Gldip~v~~VI~ 96 (231)
..+++.++.+||.
T Consensus 351 ~~~~~~~l~lvVI 363 (630)
T TIGR00643 351 EKVEFKRLALVII 363 (630)
T ss_pred ccccccccceEEE
Confidence 3567778887775
No 165
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.17 E-value=0.12 Score=49.30 Aligned_cols=78 Identities=21% Similarity=0.109 Sum_probs=55.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC----CCccEEEecCccccccCC------
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN----GKVRLLIATSVAARGLDV------ 88 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~----g~~~vLvaT~~~~~Gldi------ 88 (231)
.++..|.|++- ..++.+++.|...---...+.|..+ .+...+++|++ |.-.||++|+.+-+|+|+
T Consensus 470 ~G~~lvLfTS~---~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 470 QGGTLVLTTAF---SHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVS 544 (636)
T ss_pred CCCEEEEechH---HHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCC
Confidence 35666656653 4688888888543112346666543 34668888887 478999999999999999
Q ss_pred --C--CCcEEEEecCCC
Q psy17587 89 --K--HLNLVVNYDCPN 101 (231)
Q Consensus 89 --p--~v~~VI~~d~P~ 101 (231)
| .++.||..-+|.
T Consensus 545 p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPF 561 (636)
T ss_pred CCCCCcccEEEEEeCCC
Confidence 2 577898877773
No 166
>KOG0701|consensus
Probab=96.00 E-value=0.0046 Score=63.39 Aligned_cols=92 Identities=29% Similarity=0.438 Sum_probs=70.8
Q ss_pred EEEcCChhHHHHHHHHHHHHHC-CCCeeeccCCCCHH-----------HHHHHHHHHhCCCccEEEecCccccccCCCCC
Q psy17587 24 VDFKNGKVRLLVCAIVKELMKA-GYPCLSLHGGIDQY-----------DRDSTIVDFKNGKVRLLIATSVAARGLDVKHL 91 (231)
Q Consensus 24 iiF~~~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~-----------~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v 91 (231)
+|||+.. ..+..+.+.++.. -..+..+.|.+.+. .+..++..|+...+++|++|.++.+|+|+|.+
T Consensus 296 i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 296 IIFVDQR--YTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred eeecccc--hHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4488765 4466666666543 12333455543221 25678888999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhcccCCCC
Q psy17587 92 NLVVNYDCPNHYEDYVHRCGRTGRAG 117 (231)
Q Consensus 92 ~~VI~~d~P~~~~~y~qr~GR~gR~g 117 (231)
+.|+.++.|....+|+|..||+-...
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999987654
No 167
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.91 E-value=0.021 Score=56.56 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-cccccCCCCCc
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-AARGLDVKHLN 92 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-~~~Gldip~v~ 92 (231)
..+.+++|.+++. ..+.+.++.+.. .++++..++|..+..++.+.++.+++|+++|+|+|.. +...+.+.++.
T Consensus 498 ~~g~qvlvLvPT~--~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~ 575 (926)
T TIGR00580 498 LDGKQVAVLVPTT--LLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLG 575 (926)
T ss_pred HhCCeEEEEeCcH--HHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCC
Confidence 3457888899987 789988887764 3678889999999999999999999999999999984 44557788888
Q ss_pred EEEE
Q psy17587 93 LVVN 96 (231)
Q Consensus 93 ~VI~ 96 (231)
+||.
T Consensus 576 llVI 579 (926)
T TIGR00580 576 LLII 579 (926)
T ss_pred EEEe
Confidence 8775
No 168
>KOG1001|consensus
Probab=95.80 E-value=0.0035 Score=59.80 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=93.9
Q ss_pred CchhhhhccccccCC-C-CeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC-CccE-EEecC
Q psy17587 5 YPCLSLHGGIDQYDR-D-STIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG-KVRL-LIATS 80 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~-~-~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~v-LvaT~ 80 (231)
+|+..+...|..... . .++|||+.-. ...+.+.-.|...++....+-|.|+...|.+.+..|..+ ...| +++.-
T Consensus 522 ~ki~~~~~~l~~~~~s~~~kiiifsq~~--~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slk 599 (674)
T KOG1001|consen 522 SKIYAFLKILQAKEMSEQPKIVIFSQLI--WGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLK 599 (674)
T ss_pred hhhHHHHHHHhhccCCCCCceeeehhHH--HHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHH
Confidence 344444444432222 2 3899999954 778888888888899999999999999999999999854 3444 57889
Q ss_pred ccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeE
Q psy17587 81 VAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFA 122 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~ 122 (231)
+.+.|+|+...++|+..|+-|++..--|.+-|+.|-|+.-.+
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhccccee
Confidence 999999999999999999999999999999999999976444
No 169
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.029 Score=55.14 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=46.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----C-CCeee-ccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----G-YPCLS-LHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~-~~~~~-lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
++++.+..++. ..+.+.++.|.+. + ..+.. +||.|+.+++..++++|.+|+.+|||+|+.+
T Consensus 125 gkr~yii~PT~--~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 125 GKRVYIIVPTT--TLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred CCeEEEEecCH--HHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 45566566655 5577777776543 3 43333 9999999999999999999999999999764
No 170
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=95.46 E-value=0.094 Score=43.89 Aligned_cols=100 Identities=15% Similarity=0.270 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCC----ccEEEecCccccccCCCCCcEEEEecCCCCHhHHHH
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGK----VRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVH 108 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~----~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~q 108 (231)
+..+.|.+.+.. ++.+..++++.+... -+|.++. ..|+|.=+.++||+.+++..+....--|.+.+++.|
T Consensus 98 ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Q 171 (239)
T PF10593_consen 98 EIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQ 171 (239)
T ss_pred HHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHH
Confidence 334555555554 799999998766543 4555554 789999999999999999988888888889999999
Q ss_pred HhcccC-CCCCceeEEEEecccchHHHHHHH
Q psy17587 109 RCGRTG-RAGNKGFAYTFITLEQERHAGEII 138 (231)
Q Consensus 109 r~GR~g-R~g~~g~~i~~~~~~~~~~~~~~~ 138 (231)
|.-..| |.|....|=++.++.-...+..+.
T Consensus 172 mgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 172 MGRWFGYRPGYEDLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred HhhcccCCcccccceEEecCHHHHHHHHHHH
Confidence 887777 777788888887766555444443
No 171
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.23 E-value=0.051 Score=52.03 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=67.2
Q ss_pred chhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHC-C-CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 6 PCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKA-G-YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 6 k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~-~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
|....+.++.+. ..++.+||.++.. ..+.++.+.|... | ..+..+|+++++.+|.+++.+..+|+.+|+|.|-.+
T Consensus 173 KTevyl~~i~~~l~~Gk~vLvLvPEi--~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 173 WARRLAAAAAATLRAGRGALVVVPDQ--RDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecch--hhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 344444455333 2477888899987 6789999999754 4 679999999999999999999999999999999763
Q ss_pred ccccCCCCCcEEEEec
Q psy17587 83 ARGLDVKHLNLVVNYD 98 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d 98 (231)
. =..+++...||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 2 23344666666533
No 172
>KOG0921|consensus
Probab=95.16 E-value=0.029 Score=54.45 Aligned_cols=117 Identities=18% Similarity=0.355 Sum_probs=88.6
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC-------CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA-------GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
.+|+..+....-.+.|++|.+.= ..+-.|..+|... .+.+...|+.++..+..++.+....|..+++++|.
T Consensus 631 Eal~~~i~s~~i~gailvflpgw--a~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stn 708 (1282)
T KOG0921|consen 631 EALLNDIASRNIDGAVLVFLPGW--AEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTN 708 (1282)
T ss_pred HHHHhhhcccCCccceeeecCch--HHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccc
Confidence 34445555555578888898775 4466666666432 47788999999999999999999999999999999
Q ss_pred ccccccCCCCCcEEEEecC------------------CCCHhHHHHHhcccCCCCCceeEEEEec
Q psy17587 81 VAARGLDVKHLNLVVNYDC------------------PNHYEDYVHRCGRTGRAGNKGFAYTFIT 127 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d~------------------P~~~~~y~qr~GR~gR~g~~g~~i~~~~ 127 (231)
++.-.+.+.++.+||..+. -.+..+..||-||+||. ++|.|..+.+
T Consensus 709 iaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 709 IAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred eeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 9999999998777775332 22456679999999985 4678877664
No 173
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.041 Score=52.97 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=67.3
Q ss_pred chhhhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHC-CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 6 PCLSLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKA-GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 6 k~~~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
|....++.+.+.- .++.+||-++.+ ....++.+.+... |.++..+|+++++.+|..+..+.++|+.+|+|.|-.+
T Consensus 230 KTEvYl~~i~~~L~~GkqvLvLVPEI--~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA- 306 (730)
T COG1198 230 KTEVYLEAIAKVLAQGKQVLVLVPEI--ALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA- 306 (730)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccc--cchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-
Confidence 4555566664433 467888889987 6688888888644 8899999999999999999999999999999998753
Q ss_pred cccCCCCCcEEEE
Q psy17587 84 RGLDVKHLNLVVN 96 (231)
Q Consensus 84 ~Gldip~v~~VI~ 96 (231)
-=..+++...||.
T Consensus 307 lF~Pf~~LGLIIv 319 (730)
T COG1198 307 LFLPFKNLGLIIV 319 (730)
T ss_pred hcCchhhccEEEE
Confidence 1233446666664
No 174
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.95 E-value=0.081 Score=50.04 Aligned_cols=92 Identities=13% Similarity=0.184 Sum_probs=72.7
Q ss_pred CchhhhhccccccCCCCeEEEEcCCh--hHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGK--VRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV- 81 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~--~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~- 81 (231)
-.+.+++..+.....+..+.+-+++. -+++.+.+.+.|...|+.+..+.|.+....|.+++++..+|+++++|.|-+
T Consensus 296 KTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL 375 (677)
T COG1200 296 KTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL 375 (677)
T ss_pred HHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh
Confidence 34566777777777777777688874 113445555666677999999999999999999999999999999999986
Q ss_pred cccccCCCCCcEEEE
Q psy17587 82 AARGLDVKHLNLVVN 96 (231)
Q Consensus 82 ~~~Gldip~v~~VI~ 96 (231)
+-..+++.+.-+||.
T Consensus 376 iQd~V~F~~LgLVIi 390 (677)
T COG1200 376 IQDKVEFHNLGLVII 390 (677)
T ss_pred hhcceeecceeEEEE
Confidence 566788888887765
No 175
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=94.77 E-value=0.17 Score=40.46 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=53.7
Q ss_pred hhcccccc--CCCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc--
Q psy17587 10 LHGGIDQY--DRDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-- 81 (231)
Q Consensus 10 L~~~L~~~--~~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-- 81 (231)
++..+... ..+.++||.|++. ..+.+..+.+... ++.+..++|+.+..+...... +...|+|+|.-
T Consensus 57 ~l~~~~~~~~~~~~~viii~p~~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l 130 (203)
T cd00268 57 ILEKLDPSPKKDGPQALILAPTR--ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRL 130 (203)
T ss_pred HHHHHHhhcccCCceEEEEcCCH--HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHH
Confidence 33444443 3456788889987 6688777766543 678889999998766554333 67889999952
Q ss_pred ---c-ccccCCCCCcEEEE
Q psy17587 82 ---A-ARGLDVKHLNLVVN 96 (231)
Q Consensus 82 ---~-~~Gldip~v~~VI~ 96 (231)
+ ..-.++++++++|.
T Consensus 131 ~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 131 LDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred HHHHHcCCCChhhCCEEEE
Confidence 2 22256667777664
No 176
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=94.70 E-value=0.12 Score=49.98 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=71.3
Q ss_pred cccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCc
Q psy17587 13 GIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLN 92 (231)
Q Consensus 13 ~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~ 92 (231)
++.....++.|-|||++. ..++.+++.....+.++..++|.-+..+. +. =++.+|++=|+++..|+++.+..
T Consensus 275 L~~~L~~gknIcvfsSt~--~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 275 LLARLNAGKNICVFSSTV--SFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKH 346 (824)
T ss_pred HHHHHhCCCcEEEEeChH--HHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhh
Confidence 345666788999999987 66888888888888899999887665522 22 35689999999999999997543
Q ss_pred --EEEEe--cCC--CCHhHHHHHhcccCCCCC
Q psy17587 93 --LVVNY--DCP--NHYEDYVHRCGRTGRAGN 118 (231)
Q Consensus 93 --~VI~~--d~P--~~~~~y~qr~GR~gR~g~ 118 (231)
-|.-| ... .+..+..|++||+-....
T Consensus 347 F~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 347 FDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred ceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc
Confidence 34333 222 245568999999865443
No 177
>KOG1513|consensus
Probab=94.69 E-value=0.057 Score=51.94 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=58.8
Q ss_pred HHHhCCCccEEEecCccccccCCCCCcEEE--------EecCCCCHhHHHHHhcccCCCCC-ceeEEEEecc---cchHH
Q psy17587 66 VDFKNGKVRLLIATSVAARGLDVKHLNLVV--------NYDCPNHYEDYVHRCGRTGRAGN-KGFAYTFITL---EQERH 133 (231)
Q Consensus 66 ~~F~~g~~~vLvaT~~~~~Gldip~v~~VI--------~~d~P~~~~~y~qr~GR~gR~g~-~g~~i~~~~~---~~~~~ 133 (231)
++|..|+..|-|-+.+++-||-++.=+-|+ -..+||+.+.-+|..||+.|.++ .+.-++|+.. ++..+
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 569999999999999999999998544444 47899999999999999999987 4555666643 35555
Q ss_pred HHHHHHHHH
Q psy17587 134 AGEIIRALE 142 (231)
Q Consensus 134 ~~~~~~~l~ 142 (231)
...+.+.|+
T Consensus 931 AS~VAKRLE 939 (1300)
T KOG1513|consen 931 ASIVAKRLE 939 (1300)
T ss_pred HHHHHHHHH
Confidence 554555544
No 178
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.66 E-value=0.1 Score=52.99 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=61.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-cccccCCCCCcE
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-AARGLDVKHLNL 93 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-~~~Gldip~v~~ 93 (231)
.+.+++|.|+++ ..+.++++.+.. .++.+..++|+.+..++..+++..++|.++|+|+|.- +...+.+.++.+
T Consensus 648 ~g~qvlvLvPT~--eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~l 725 (1147)
T PRK10689 648 NHKQVAVLVPTT--LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGL 725 (1147)
T ss_pred cCCeEEEEeCcH--HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCE
Confidence 467788899987 788888888764 2567888999999999999999999999999999974 444566778887
Q ss_pred EEE
Q psy17587 94 VVN 96 (231)
Q Consensus 94 VI~ 96 (231)
+|.
T Consensus 726 LVI 728 (1147)
T PRK10689 726 LIV 728 (1147)
T ss_pred EEE
Confidence 764
No 179
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.25 E-value=0.37 Score=46.31 Aligned_cols=80 Identities=15% Similarity=0.196 Sum_probs=52.4
Q ss_pred HHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC----ccccccCCCCCcEEEEecC------CC--
Q psy17587 36 CAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS----VAARGLDVKHLNLVVNYDC------PN-- 101 (231)
Q Consensus 36 ~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~----~~~~Gldip~v~~VI~~d~------P~-- 101 (231)
+.+.+.|.+. +.++..+.+ +.+++.|. ++.+|||+|. +++ +++..|+..|. |.
T Consensus 441 er~eeeL~~~FP~~~V~r~d~-------d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfR 507 (665)
T PRK14873 441 RRTAEELGRAFPGVPVVTSGG-------DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLR 507 (665)
T ss_pred HHHHHHHHHHCCCCCEEEECh-------HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcC
Confidence 4444444332 455554432 35788996 5999999998 555 35676665543 32
Q ss_pred ----CHhHHHHHhcccCCCCCceeEEEEecc
Q psy17587 102 ----HYEDYVHRCGRTGRAGNKGFAYTFITL 128 (231)
Q Consensus 102 ----~~~~y~qr~GR~gR~g~~g~~i~~~~~ 128 (231)
...-+.|-.||+||....|.+++...+
T Consensus 508 A~Er~~qll~qvagragr~~~~G~V~iq~~p 538 (665)
T PRK14873 508 AAEDTLRRWMAAAALVRPRADGGQVVVVAES 538 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC
Confidence 245567888999999889999887533
No 180
>PRK14701 reverse gyrase; Provisional
Probab=94.06 E-value=0.17 Score=53.07 Aligned_cols=61 Identities=15% Similarity=0.246 Sum_probs=52.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH------CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK------AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~------~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
.+.+++|.++++ ..+.++.+.|.. .+..+..+||+++..++...++.+++|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTr--eLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTT--LLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHH--HHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 356788899977 788988888875 2467789999999999999999999999999999985
No 181
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.78 E-value=0.25 Score=46.04 Aligned_cols=68 Identities=26% Similarity=0.403 Sum_probs=54.0
Q ss_pred EEEEcCChhHHHHHHHHHHHHHC-----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccccc-cCCCCC
Q psy17587 23 IVDFKNGKVRLLVCAIVKELMKA-----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAARG-LDVKHL 91 (231)
Q Consensus 23 iiiF~~~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~G-ldip~v 91 (231)
.+|.++++ +.+.++++.+... ++.+.+++||++...+... ++.| .+|+|+|+ .+.++ +++..+
T Consensus 102 aLil~PTR--ELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 102 ALILAPTR--ELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred eEEECCCH--HHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhhc
Confidence 78899987 8899999887532 5778999999998776644 4446 99999997 56666 888888
Q ss_pred cEEEE
Q psy17587 92 NLVVN 96 (231)
Q Consensus 92 ~~VI~ 96 (231)
.++|.
T Consensus 176 ~~lVl 180 (513)
T COG0513 176 ETLVL 180 (513)
T ss_pred CEEEe
Confidence 88775
No 182
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.53 E-value=0.29 Score=46.70 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=51.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH-----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccccc-cC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK-----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAARG-LD 87 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~-----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~G-ld 87 (231)
...++||.|+++ +.+.++++.+.. .++.+..+||+.+...+...+ .....|+|+|+ .+.++ ++
T Consensus 73 ~~~~~LIL~PTr--eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~ 146 (629)
T PRK11634 73 KAPQILVLAPTR--ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLD 146 (629)
T ss_pred CCCeEEEEeCcH--HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcc
Confidence 345788899987 788888877653 278899999998876554433 24578999995 33333 67
Q ss_pred CCCCcEEEE
Q psy17587 88 VKHLNLVVN 96 (231)
Q Consensus 88 ip~v~~VI~ 96 (231)
+.++.+||.
T Consensus 147 l~~l~~lVl 155 (629)
T PRK11634 147 LSKLSGLVL 155 (629)
T ss_pred hhhceEEEe
Confidence 778887764
No 183
>KOG0951|consensus
Probab=93.46 E-value=0.49 Score=47.96 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=78.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH----------------------CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK----------------------AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~----------------------~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
.+..++|++++ ..+..++..|.. ...+...=|-+|+..+..-+-.-|..|.+.|+|
T Consensus 1359 ~k~~~vf~p~r--k~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1359 RKPAIVFLPTR--KHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred CCCeEEEeccc--hhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEE
Confidence 46667799876 567666554321 123333338899999999888899999999998
Q ss_pred ecCccccccCCCCCcEEEE----ec------CCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHH
Q psy17587 78 ATSVAARGLDVKHLNLVVN----YD------CPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEI 137 (231)
Q Consensus 78 aT~~~~~Gldip~v~~VI~----~d------~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~ 137 (231)
...- ..|+-...--+|+. || .+.+.....|++|+|.| .|.|+++........++++
T Consensus 1437 ~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1437 MSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 8766 77776654333332 44 34458899999999988 5678888887776654443
No 184
>KOG0339|consensus
Probab=93.31 E-value=1.2 Score=41.24 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=51.4
Q ss_pred CCeEEEEcCChhHHHHHHHHH---HH-HHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC------ccccccCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVK---EL-MKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS------VAARGLDVK 89 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~---~L-~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~------~~~~Gldip 89 (231)
+.-.||.|+++ +.+-++.. .| ...|+.++++|||++.-++.+.++ -...++|||+ +--.++|+.
T Consensus 296 gPi~vilvPTr--ela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~ 369 (731)
T KOG0339|consen 296 GPIGVILVPTR--ELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLS 369 (731)
T ss_pred CCeEEEEeccH--HHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccce
Confidence 34556668876 55665554 45 445899999999999988877766 3568999997 344678888
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
.|++.|.
T Consensus 370 rvS~LV~ 376 (731)
T KOG0339|consen 370 RVSYLVL 376 (731)
T ss_pred eeeEEEE
Confidence 8887664
No 185
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=93.30 E-value=0.32 Score=44.43 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=52.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC-----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccc-cccCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA-----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAA-RGLDV 88 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~-~Gldi 88 (231)
..+++|.|+++ +.+.++++.+... ++.+..++|+.+...+...+. ...+|+|+|+ .+. ..+++
T Consensus 72 ~~~~lil~Ptr--eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l 145 (460)
T PRK11776 72 RVQALVLCPTR--ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDL 145 (460)
T ss_pred CceEEEEeCCH--HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccH
Confidence 34678899987 8899988877642 678899999998766544333 5689999995 333 34778
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
.++++||.
T Consensus 146 ~~l~~lVi 153 (460)
T PRK11776 146 DALNTLVL 153 (460)
T ss_pred HHCCEEEE
Confidence 88888875
No 186
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=92.68 E-value=0.68 Score=41.87 Aligned_cols=71 Identities=10% Similarity=0.224 Sum_probs=51.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc------cccccCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV------AARGLDVK 89 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~------~~~Gldip 89 (231)
..+++|.++++ +.+.++.+.+.. .++++..++|+.+...+...+ .+..+|+|+|+- ....+++.
T Consensus 73 ~~~~lil~Pt~--eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~ 146 (434)
T PRK11192 73 PPRILILTPTR--ELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCR 146 (434)
T ss_pred CceEEEECCcH--HHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcc
Confidence 46788899987 778887776543 478899999999877654433 356789999972 22456778
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
++++||.
T Consensus 147 ~v~~lVi 153 (434)
T PRK11192 147 AVETLIL 153 (434)
T ss_pred cCCEEEE
Confidence 8888775
No 187
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=92.60 E-value=0.37 Score=49.26 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=49.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCe---eeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPC---LSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~---~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
+.+++|.++++ +.+.++++.+... ++.+ ..+||+++..++...++.+.+|..+|+|+|+-
T Consensus 121 g~~vLIL~PTr--eLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTT--LLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHH--HHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 57788899987 8889888887643 4443 36899999999999999999999999999974
No 188
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.86 E-value=0.66 Score=42.60 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=52.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
....||.++.+ +.+......|...|+++..++|+.+..++..++.....|..+++++|+-
T Consensus 51 ~~~~lVi~P~~--~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLI--SLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHH--HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 45667789976 7788888889999999999999999999999999999999999999974
No 189
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=91.21 E-value=0.95 Score=42.83 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=51.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
.+.+||.++.+ ..+......|...|+.+..+||+++..++..++.....|..++++.|+-
T Consensus 53 ~g~~lVisPl~--sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 53 KGLTVVISPLI--SLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred CCcEEEEcCCH--HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 34566678876 6788888888889999999999999999999999999999999998854
No 190
>KOG0331|consensus
Probab=90.40 E-value=1.9 Score=39.98 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=67.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccccc-cCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAARG-LDV 88 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~G-ldi 88 (231)
...+++|-++++ +.+.++.+..... ++++.|++||.+...+...+++ .++|+|+|+ .+..| +|+
T Consensus 164 ~~P~vLVL~PTR--ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l 237 (519)
T KOG0331|consen 164 DGPIVLVLAPTR--ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNL 237 (519)
T ss_pred CCCeEEEEcCcH--HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccc
Confidence 367899999987 8899988887654 4668899999987766554432 478999995 56666 788
Q ss_pred CCCcEEEE--------ecCCCCHhHHHHHhcccCC
Q psy17587 89 KHLNLVVN--------YDCPNHYEDYVHRCGRTGR 115 (231)
Q Consensus 89 p~v~~VI~--------~d~P~~~~~y~qr~GR~gR 115 (231)
..|.++|. .++-..+...++++++..|
T Consensus 238 ~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 238 SRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred cceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 88888875 3344456777777777666
No 191
>KOG2340|consensus
Probab=90.27 E-value=1.4 Score=40.86 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=81.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc--cccccCCCCCcEEEEe
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV--AARGLDVKHLNLVVNY 97 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~--~~~Gldip~v~~VI~~ 97 (231)
.+.++|+.++.+. --.+-+++.+.+++...+|---+...-.++-.-|-.|...||+-|.= .=+--++.+|..||.|
T Consensus 552 ~s~~LiyIPSYfD--FVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfY 629 (698)
T KOG2340|consen 552 ESGILIYIPSYFD--FVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFY 629 (698)
T ss_pred cCceEEEecchhh--HHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEe
Confidence 4677889998733 55667788777777777776555666666777799999999999874 4567788999999999
Q ss_pred cCCCCHhHH---HHHhcccCCCCC----ceeEEEEecccchHHH
Q psy17587 98 DCPNHYEDY---VHRCGRTGRAGN----KGFAYTFITLEQERHA 134 (231)
Q Consensus 98 d~P~~~~~y---~qr~GR~gR~g~----~g~~i~~~~~~~~~~~ 134 (231)
.+|.+|.-| +.+.+|+.-.|+ .-.|.++++.-|.-.+
T Consensus 630 qpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~L 673 (698)
T KOG2340|consen 630 QPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRL 673 (698)
T ss_pred cCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHH
Confidence 999997766 445566654332 3456667776665433
No 192
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.17 E-value=1.5 Score=40.02 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=51.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC------ccccccCCCC
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS------VAARGLDVKH 90 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~------~~~~Gldip~ 90 (231)
.++||.|+++ +.+.++.+.+... ++.+..++|+.+....... + .+..+|+|||+ .....+++..
T Consensus 76 ~~aLil~Ptr--eLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IiV~TP~rL~~~~~~~~~~l~~ 149 (456)
T PRK10590 76 VRALILTPTR--ELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---L-RGGVDVLVATPGRLLDLEHQNAVKLDQ 149 (456)
T ss_pred ceEEEEeCcH--HHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---H-cCCCcEEEEChHHHHHHHHcCCccccc
Confidence 3688899987 7888888877643 6778889999886654322 2 36789999996 2344567888
Q ss_pred CcEEEE
Q psy17587 91 LNLVVN 96 (231)
Q Consensus 91 v~~VI~ 96 (231)
++++|.
T Consensus 150 v~~lVi 155 (456)
T PRK10590 150 VEILVL 155 (456)
T ss_pred ceEEEe
Confidence 888775
No 193
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=89.90 E-value=0.59 Score=32.34 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=32.5
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
.....++.+|+||++- ..+...+..|+..|+++..+.||++
T Consensus 46 ~~~~~~~~vvl~c~~g--~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 46 NELPKDKEIIVYCAVG--LRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred HhcCCCCcEEEEcCCC--hhHHHHHHHHHHCCCCEEEecCCHH
Confidence 3345678899999875 3477788899999999999999975
No 194
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.76 E-value=1.4 Score=41.71 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=51.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----cccc--ccCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAAR--GLDV 88 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~--Gldi 88 (231)
..++||.++++ +.+.++.+.+.. .++.+..+||+.+...+...+ .+..+|+|+|+ .+.. .+++
T Consensus 84 ~~raLIl~PTr--eLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l----~~~~dIiV~TP~rL~~~l~~~~~~~l 157 (572)
T PRK04537 84 DPRALILAPTR--ELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL----QQGVDVIIATPGRLIDYVKQHKVVSL 157 (572)
T ss_pred CceEEEEeCcH--HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH----hCCCCEEEECHHHHHHHHHhccccch
Confidence 35788899987 889888887754 367889999999877655444 34678999996 2322 3667
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
..+.+||.
T Consensus 158 ~~v~~lVi 165 (572)
T PRK04537 158 HACEICVL 165 (572)
T ss_pred hheeeeEe
Confidence 77777664
No 195
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=88.53 E-value=0.69 Score=32.62 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=32.8
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
....+++.+|++|.+-.+ ....+..|...|+.+..+.||+.
T Consensus 56 ~~~~~~~~ivv~C~~G~r--s~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 56 DQLPDDQEVTVICAKEGS--SQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred hhCCCCCeEEEEcCCCCc--HHHHHHHHHHcCceeEEeCCcHH
Confidence 444567899999987533 77888899999999889999975
No 196
>KOG0347|consensus
Probab=88.23 E-value=1 Score=41.99 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=45.1
Q ss_pred eEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 22 TIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 22 ~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
-.+||++++ +.+.++.+.|.. .++.+..+.|||+...+++.+.. ...|+|||+
T Consensus 265 ~~LV~tPTR--ELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTR--ELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChH--HHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 367799977 889999998864 48999999999999988888877 578999997
No 197
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=87.61 E-value=2.3 Score=40.42 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=51.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
...+||.++.+ ..+......|...|+.+.+++++++..++..++.....|+++++++|+
T Consensus 65 ~g~tlVisPl~--sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLI--SLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHH--HHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 34567688876 778888888999999999999999999999999999999999998885
No 198
>KOG0298|consensus
Probab=87.23 E-value=0.85 Score=46.19 Aligned_cols=102 Identities=19% Similarity=0.136 Sum_probs=78.3
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCcc-EEEecCccccccCCC
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVR-LLIATSVAARGLDVK 89 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~-vLvaT~~~~~Gldip 89 (231)
...|+..+...++|+|+.-. ...+-+...+...++....--+ .++-...+..|++ +. .|+-+...+-|+|+-
T Consensus 1212 il~iK~k~~qekvIvfsqws--~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~ 1284 (1394)
T KOG0298|consen 1212 ILYIKFKNEQEKVIVFSQWS--VVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLI 1284 (1394)
T ss_pred HHHHhccCcCceEEEEEehH--HHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHH
Confidence 34455555678999999865 4577777777776666544333 3345567777776 44 467788999999999
Q ss_pred CCcEEEEecCCCCHhHHHHHhcccCCCCCc
Q psy17587 90 HLNLVVNYDCPNHYEDYVHRCGRTGRAGNK 119 (231)
Q Consensus 90 ~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~ 119 (231)
+..+|+..++-.++..-.|.+||+.|-|+.
T Consensus 1285 eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1285 EATHVFLVEPILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred hhhhhheeccccCchHHHhhhhhhhhcccc
Confidence 999999999999999999999999999974
No 199
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.59 E-value=3.8 Score=36.93 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=50.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----c-ccccCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----A-ARGLDVK 89 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~-~~Gldip 89 (231)
..++||.++++ +.+.++.+.+.. .++++..++|+.+.......+ ....+|+|+|+- + ...+++.
T Consensus 83 ~~~~lil~Ptr--eLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~ 156 (423)
T PRK04837 83 QPRALIMAPTR--ELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL----ESGVDILIGTTGRLIDYAKQNHINLG 156 (423)
T ss_pred CceEEEECCcH--HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcccc
Confidence 35788899987 788888776543 378899999998765543332 345799999972 2 2356788
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
.+.++|.
T Consensus 157 ~v~~lVi 163 (423)
T PRK04837 157 AIQVVVL 163 (423)
T ss_pred cccEEEE
Confidence 8888775
No 200
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=85.83 E-value=4.2 Score=31.00 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=48.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHH-HHHHHHHHHhCCCccEEEecCc------cccccC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLIATSV------AARGLD 87 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~-~R~~~~~~F~~g~~~vLvaT~~------~~~Gld 87 (231)
+..++++.++++ ..++++.+.+... +.++..+||+.+.. +....+ .+..+|+|+|.. ....++
T Consensus 43 ~~~~~lii~P~~--~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~ 116 (169)
T PF00270_consen 43 KDARVLIIVPTR--ALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKIN 116 (169)
T ss_dssp SSSEEEEEESSH--HHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSST
T ss_pred CCceEEEEeecc--cccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccc
Confidence 345888899987 7788888887654 46788999998854 322223 667899999863 112235
Q ss_pred CCCCcEEEE
Q psy17587 88 VKHLNLVVN 96 (231)
Q Consensus 88 ip~v~~VI~ 96 (231)
+..+++||.
T Consensus 117 ~~~~~~iVi 125 (169)
T PF00270_consen 117 ISRLSLIVI 125 (169)
T ss_dssp GTTESEEEE
T ss_pred cccceeecc
Confidence 555666554
No 201
>KOG0389|consensus
Probab=85.25 E-value=2.1 Score=41.51 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=55.2
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCC--CccEEEecCcc
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNG--KVRLLIATSVA 82 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLvaT~~~ 82 (231)
+.+.+.+|++.+....-+|.|++- +.+.+...+.+. .+.+.++||. +.+|...-..+.++ .++|||+|--+
T Consensus 435 vIaFlayLkq~g~~gpHLVVvPsS---TleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~l 509 (941)
T KOG0389|consen 435 VIAFLAYLKQIGNPGPHLVVVPSS---TLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNL 509 (941)
T ss_pred HHHHHHHHHHcCCCCCcEEEecch---hHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeec
Confidence 345667777777766666678763 467777777664 6889999997 58888888888765 79999999665
Q ss_pred ccc
Q psy17587 83 ARG 85 (231)
Q Consensus 83 ~~G 85 (231)
+.|
T Consensus 510 a~~ 512 (941)
T KOG0389|consen 510 AAS 512 (941)
T ss_pred ccC
Confidence 554
No 202
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=84.92 E-value=3.5 Score=41.94 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=49.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC--CCccEEEecCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN--GKVRLLIATSV 81 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~vLvaT~~ 81 (231)
...+||.++.+ ..+..-...|...|+.+..+.|+++..++..++..+.. |+++||++|+-
T Consensus 500 ~GiTLVISPLi--SLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 500 PGITLVISPLV--SLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred CCcEEEEeCHH--HHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 35677788976 66765556667789999999999999999999999877 89999999984
No 203
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=84.27 E-value=4.6 Score=40.94 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=62.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHH----HHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-ccccccCCCCCc
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKE----LMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-VAARGLDVKHLN 92 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~----L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-~~~~Gldip~v~ 92 (231)
..++.+.|.|++. -.+++=++. +...++++..+..=.+.++...+++..++|+++|+|.|- +++.++-+.+..
T Consensus 641 ~~GKQVAvLVPTT--lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLG 718 (1139)
T COG1197 641 MDGKQVAVLVPTT--LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLG 718 (1139)
T ss_pred cCCCeEEEEcccH--HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCC
Confidence 3568888899974 445554444 455578888999999999999999999999999999996 677888888888
Q ss_pred EEEE
Q psy17587 93 LVVN 96 (231)
Q Consensus 93 ~VI~ 96 (231)
.+|.
T Consensus 719 LlII 722 (1139)
T COG1197 719 LLII 722 (1139)
T ss_pred eEEE
Confidence 8775
No 204
>PRK09401 reverse gyrase; Reviewed
Probab=83.80 E-value=2.9 Score=42.91 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=46.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC----CCCee--eccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCL--SLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~--~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
.+.+++|.++++ +.+.++++.+... ++.+. ..|++++..++....+.+.+|..+|+|+|+
T Consensus 122 ~g~~alIL~PTr--eLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 122 KGKKSYIIFPTR--LLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred cCCeEEEEeccH--HHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 367788899987 8899999988754 34443 445667778888888899999999999995
No 205
>PTZ00110 helicase; Provisional
Probab=83.72 E-value=5.2 Score=37.60 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=50.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccccc-cCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAARG-LDVK 89 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~G-ldip 89 (231)
+..+||.++++ +.+.++.+.+... ++.+.+++|+.+.......+ +. ..+|+|+|+ .+..+ +++.
T Consensus 203 gp~~LIL~PTr--eLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l---~~-~~~IlVaTPgrL~d~l~~~~~~l~ 276 (545)
T PTZ00110 203 GPIVLVLAPTR--ELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL---RR-GVEILIACPGRLIDFLESNVTNLR 276 (545)
T ss_pred CcEEEEECChH--HHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH---Hc-CCCEEEECHHHHHHHHHcCCCChh
Confidence 45688889987 8888888887653 57788899998866544333 33 478999996 33333 5677
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
.+.+||.
T Consensus 277 ~v~~lVi 283 (545)
T PTZ00110 277 RVTYLVL 283 (545)
T ss_pred hCcEEEe
Confidence 7777664
No 206
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=83.30 E-value=6.4 Score=36.11 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=51.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc------cccccCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV------AARGLDVK 89 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~------~~~Gldip 89 (231)
..++||.++++ +.+.++.+.+.. .++.+..++|+.+.... .+.+..+..+|+|+|+- -...+.+.
T Consensus 162 ~~~aLil~Ptr--eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~ 236 (475)
T PRK01297 162 EPRALIIAPTR--ELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLD 236 (475)
T ss_pred CceEEEEeCcH--HHHHHHHHHHHHhhccCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECHHHHHHHHHcCCcccc
Confidence 35788889987 778888877654 36788899999875443 34555678899999973 22345667
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
++++||.
T Consensus 237 ~l~~lVi 243 (475)
T PRK01297 237 MVEVMVL 243 (475)
T ss_pred cCceEEe
Confidence 7777765
No 207
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=83.28 E-value=2.1 Score=29.21 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=31.6
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
..++..+|+||.+. ..+..++..|...|++ +..+.||+.
T Consensus 53 ~~~~~~iv~~c~~g--~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 53 LDKDKPVVVYCRSG--NRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCCeEEEEeCCC--cHHHHHHHHHHHcCCCceEEecCCHH
Confidence 44578999999876 3478888999999987 889999974
No 208
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=82.02 E-value=5.1 Score=37.92 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=46.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+..||.++=. .....=.+.|+..|+.+.++++.++.++|..++..+..|.+++|.-++
T Consensus 58 G~TLVVSPLi--SLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 58 GLTLVVSPLI--SLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCEEEECchH--HHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 3455566644 455555667778899999999999999999999999999999986654
No 209
>PRK13766 Hef nuclease; Provisional
Probab=81.95 E-value=5.4 Score=38.96 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHC-CC---CeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc------cccccC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKA-GY---PCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV------AARGLD 87 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~------~~~Gld 87 (231)
..++++||.|+++ ..+++..+.+... +. .+..++|+.+..+|..... ..+|+|+|+- ...-++
T Consensus 56 ~~~~~vLvl~Pt~--~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~ 128 (773)
T PRK13766 56 KKGGKVLILAPTK--PLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRIS 128 (773)
T ss_pred hCCCeEEEEeCcH--HHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCC
Confidence 3567899899987 6788888777653 33 7888999999888765543 3579999963 233456
Q ss_pred CCCCcEEEEec
Q psy17587 88 VKHLNLVVNYD 98 (231)
Q Consensus 88 ip~v~~VI~~d 98 (231)
+.++++||.-.
T Consensus 129 ~~~~~liVvDE 139 (773)
T PRK13766 129 LEDVSLLIFDE 139 (773)
T ss_pred hhhCcEEEEEC
Confidence 66778777543
No 210
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=81.12 E-value=2.8 Score=28.95 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=33.7
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+.+....+++.+||+|++- ..+...+..|...|+. +..+.|++.
T Consensus 47 ~~~~~~~~~~~~ivv~c~~g--~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 47 DDWLGDLDRDRPVVVYCYHG--NSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred HHHHhhcCCCCCEEEEeCCC--ChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 33444556788999999876 3478888899988885 778888864
No 211
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=81.09 E-value=3.8 Score=28.49 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
.+++.||++|++-. .+...+..|...|+ ++..+.|||.
T Consensus 54 ~~~~~ivv~c~~g~--~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSL--LARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChH--HHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 45788999998763 36777788888888 5888999874
No 212
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=80.50 E-value=2.6 Score=29.68 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.+||+|.+-.+ ....+..|...|++ +..+.||+.
T Consensus 59 ~~~~~ivvyC~~G~r--s~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIR--CEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchh--HHHHHHHHHHhCCcceeeechhHH
Confidence 567889999987433 55667788888985 778898874
No 213
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=80.24 E-value=4.6 Score=39.30 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=40.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHH----HCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELM----KAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
+..+.|.+++. ..+.+.++.+. ..|+++.++.|+++.++|..... .+|+++|+.
T Consensus 97 G~~V~VvTpt~--~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 97 GKGVHVVTVND--YLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred CCCEEEEcCCH--HHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 45677788875 56666666553 45899999999999888776653 689999987
No 214
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=79.11 E-value=5.8 Score=38.12 Aligned_cols=65 Identities=6% Similarity=-0.084 Sum_probs=45.0
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHH----HCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELM----KAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
.++-.+.....+..++|.++++ ..+.+.++.+. ..|+++.++.|++++++|.... ..+|+++|..
T Consensus 133 ~~lp~~~~al~G~~v~VvTptr--eLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~ 201 (656)
T PRK12898 133 ATLPAGTAALAGLPVHVITVND--YLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK 201 (656)
T ss_pred HHHHHHHHhhcCCeEEEEcCcH--HHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 3334444444567888888876 66776666654 4589999999999988766543 4578888853
No 215
>KOG0330|consensus
Probab=79.11 E-value=7.5 Score=34.94 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=54.1
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc-
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA- 82 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~- 82 (231)
+.+++.|-+....-.++|.++++ +.+-++++.+... |+.+.++-|||+... ...+.++ +..|||||+-.
T Consensus 117 LPIl~~LL~~p~~~~~lVLtPtR--ELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~--q~~~L~k--kPhilVaTPGrL 190 (476)
T KOG0330|consen 117 LPILQRLLQEPKLFFALVLTPTR--ELAQQIAEQFEALGSGIGLRVAVLVGGMDMML--QANQLSK--KPHILVATPGRL 190 (476)
T ss_pred HHHHHHHHcCCCCceEEEecCcH--HHHHHHHHHHHHhccccCeEEEEEecCchHHH--HHHHhhc--CCCEEEeCcHHH
Confidence 33444444444456777789977 8888888887654 788999999998553 3334444 57789999732
Q ss_pred ------ccccCCCCCcEEE
Q psy17587 83 ------ARGLDVKHLNLVV 95 (231)
Q Consensus 83 ------~~Gldip~v~~VI 95 (231)
..|..+..+.+.|
T Consensus 191 ~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 191 WDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred HHHHHhccCccHHHhHHHh
Confidence 4566666555443
No 216
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=78.59 E-value=6.1 Score=39.21 Aligned_cols=55 Identities=7% Similarity=0.033 Sum_probs=41.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
.+..+.|.++++ ..+...++.+.. .|+++.+++|++++.+|...+ ..+|+++|+-
T Consensus 122 ~G~~V~VvTpn~--yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 122 SGRGVHIVTVND--YLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred cCCCEEEEcCCH--HHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 345677788876 667777766543 489999999999999887665 4789999974
No 217
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=78.45 E-value=4.2 Score=28.55 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCH
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQ 58 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 58 (231)
.+++.+|++|++-.+ +...+..|...|+. +..+.||+..
T Consensus 56 ~~~~~vv~~c~~g~r--s~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 56 NPDKDIVVLCHHGGR--SMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCCeEEEEeCCCch--HHHHHHHHHHcCCccEEEecCCHHH
Confidence 347889999988633 67778888888885 7789998753
No 218
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=78.18 E-value=4.1 Score=29.13 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=28.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCC--eeeccCCCCH
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYP--CLSLHGGIDQ 58 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~--~~~lhg~~~~ 58 (231)
+++.+||||.+-.+ ....+..|...|++ +..+.|||+.
T Consensus 65 ~~~~ivv~C~~G~r--s~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 65 PRTPIVVNCAGRTR--SIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCCeEEEECCCCch--HHHHHHHHHHCCCCcceeEecCCHHH
Confidence 35789999987533 55567888889984 7889999853
No 219
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=77.88 E-value=4.4 Score=28.26 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.8
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
...++.+|++|++-.+ +...+..|.+.|+ ++..++|++.
T Consensus 51 ~~~~~~iv~~c~~g~~--s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 51 LVGANAIIFHCRSGMR--TQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCCCcEEEEeCCCch--HHHHHHHHHHcCCccEEEeeCCHH
Confidence 4557899999998633 6778888888777 5777999874
No 220
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=77.79 E-value=3 Score=30.60 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCC--CeeeccCCCCH
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGY--PCLSLHGGIDQ 58 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~--~~~~lhg~~~~ 58 (231)
.+++.++++|++-.+ +...+..|...|+ ++..+.||+..
T Consensus 70 ~~~~~ivv~C~~G~r--s~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 70 DKDSPIYVVCRRGND--SQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred CCCCcEEEECCCCCc--HHHHHHHHHHcCCccceeeecchHHH
Confidence 457889999987533 7778889999999 68999999843
No 221
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=77.51 E-value=3.7 Score=30.50 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=30.5
Q ss_pred ccCCCCeEEEEcC-ChhHHHHHHHHHHHHHCCCCeeeccCCCCH
Q psy17587 16 QYDRDSTIVDFKN-GKVRLLVCAIVKELMKAGYPCLSLHGGIDQ 58 (231)
Q Consensus 16 ~~~~~~~iiiF~~-~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~ 58 (231)
...+++.+|+||+ +-.+ +...+..|...|+++..+.||+..
T Consensus 82 ~i~~~~~vvvyC~~~G~r--s~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 82 RLERDPKLLIYCARGGMR--SQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred ccCCCCeEEEEeCCCCcc--HHHHHHHHHHcCCceeEeCCcHHH
Confidence 3456789999996 3323 566667777789999999999853
No 222
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=77.17 E-value=3.7 Score=29.50 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=31.6
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
...++..+|++|++.....+...+..|...|+++..+.||+.
T Consensus 60 ~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 60 KLDKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred cCCCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 345678899999864211367788888889999889999974
No 223
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=77.14 E-value=4.3 Score=28.22 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=28.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
+..+|+||.+-.+ +...+..|...|+++..+.||+.
T Consensus 56 ~~~iv~~c~~G~r--s~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVR--ADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCCh--HHHHHHHHHHcCCEEEEecCcHH
Confidence 5689999987533 56677888888999778899874
No 224
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=76.81 E-value=7.4 Score=38.06 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=49.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC---CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc-ccc---------
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA---GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA-ARG--------- 85 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~-~~G--------- 85 (231)
++.++|+.++++ +.+.+..+.|... ++.+..++|+.+..+|..+ + ...+|+|+|+-. -.+
T Consensus 80 ~~~~aL~l~Ptr--aLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~-~~~~IivtTPd~L~~~~L~~~~~~~ 152 (742)
T TIGR03817 80 PRATALYLAPTK--ALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----R-EHARYVLTNPDMLHRGILPSHARWA 152 (742)
T ss_pred CCcEEEEEcChH--HHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----h-cCCCEEEEChHHHHHhhccchhHHH
Confidence 456788889987 8888888887654 5788899999997776432 2 246899999722 111
Q ss_pred cCCCCCcEEEE
Q psy17587 86 LDVKHLNLVVN 96 (231)
Q Consensus 86 ldip~v~~VI~ 96 (231)
..+.++++||.
T Consensus 153 ~~l~~l~~vVi 163 (742)
T TIGR03817 153 RFLRRLRYVVI 163 (742)
T ss_pred HHHhcCCEEEE
Confidence 12567787775
No 225
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=76.70 E-value=12 Score=26.63 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=39.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCC---CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAG---YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
..++++++|++. ..++++.+.+.... ..+..+++.....+.. ........|+++|.-
T Consensus 29 ~~~~~lv~~p~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 29 KGGQVLVLAPTR--ELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred cCCCEEEEcCcH--HHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 567888899987 66888777775543 7788888876655544 222456778888775
No 226
>PRK02362 ski2-like helicase; Provisional
Probab=75.30 E-value=2.8 Score=40.84 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=52.5
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC---CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA---GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV----- 81 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~----- 81 (231)
++-.++....+.++|+.++++ ..+.+..+.+... |+++..++|+.+.... .-+..+|+|||+-
T Consensus 57 ~lail~~l~~~~kal~i~P~r--aLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-------~l~~~~IiV~Tpek~~~l 127 (737)
T PRK02362 57 ELAMLKAIARGGKALYIVPLR--ALASEKFEEFERFEELGVRVGISTGDYDSRDE-------WLGDNDIIVATSEKVDSL 127 (737)
T ss_pred HHHHHHHHhcCCcEEEEeChH--HHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-------ccCCCCEEEECHHHHHHH
Confidence 333444444577888889987 8899998888755 7889999999765431 1245789999952
Q ss_pred cccc-cCCCCCcEEEE
Q psy17587 82 AARG-LDVKHLNLVVN 96 (231)
Q Consensus 82 ~~~G-ldip~v~~VI~ 96 (231)
...+ ..+.++++||.
T Consensus 128 lr~~~~~l~~v~lvVi 143 (737)
T PRK02362 128 LRNGAPWLDDITCVVV 143 (737)
T ss_pred HhcChhhhhhcCEEEE
Confidence 2222 23567787775
No 227
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=74.88 E-value=4.9 Score=30.74 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=33.4
Q ss_pred ccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 12 GGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 12 ~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
..+.....+..+||+|.+- ..+...+..|...|+ ++..+.||+.
T Consensus 41 ~~l~~l~~~~~vVv~c~~g--~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 41 QALEKLPAAERYVLTCGSS--LLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred HHHHhcCCCCCEEEEeCCC--hHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 3444455678899999875 457778888988887 7899999974
No 228
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=73.77 E-value=7.2 Score=26.94 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=28.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
+++.+|++|.+-.+..+...+..|...|+ ++..+.|||.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 36789999987212345677788888887 5788898874
No 229
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=73.20 E-value=6.2 Score=27.73 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=28.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
+++.||+||++- ..+...+..|...|++ +..+.|++.
T Consensus 65 ~~~~ivv~c~~g--~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAG--VRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCc--HHHHHHHHHHHHcCCccceecCCcHH
Confidence 467899999986 3467778888888985 777888874
No 230
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=72.47 E-value=11 Score=37.49 Aligned_cols=69 Identities=6% Similarity=0.012 Sum_probs=48.2
Q ss_pred hhhccccccCCCCeEEEE-cCChhHHHHHHHHHHHHHCC--CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 9 SLHGGIDQYDRDSTIVDF-KNGKVRLLVCAIVKELMKAG--YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF-~~~~~~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
.+++.+.+....+.++|| ++-=..++++.+.+.+...+ +.+..++|+.++++|. .+..+..+||++|+-
T Consensus 105 PIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpd 176 (851)
T COG1205 105 PILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPD 176 (851)
T ss_pred HHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCHH
Confidence 344444444444556655 23222366788888887766 8899999999999887 667789999999864
No 231
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=71.05 E-value=4.5 Score=28.83 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=32.9
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
+.+.+...+.++.++|+|.+-. .+...+..|...|+. +..+.||++
T Consensus 48 l~~~~~~~~~~~~ivv~c~~g~--~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 48 LGAFMRQADFDTPVMVMCYHGN--SSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred HHHHHHhcCCCCCEEEEeCCCC--CHHHHHHHHHHCCchheEEecCCHH
Confidence 3444445566788998997653 366677788888886 778999874
No 232
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=70.25 E-value=13 Score=39.25 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=52.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH----------------CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc--
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK----------------AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-- 81 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~----------------~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-- 81 (231)
+.++|+.++.+ ..+.++.+.|+. .++++...||+.+..+|.+.+ ....+|||+|+-
T Consensus 37 ~~raLYISPLK--ALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll----~~ppdILVTTPEsL 110 (1490)
T PRK09751 37 TSRILYISPIK--ALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT----RNPPDILITTPESL 110 (1490)
T ss_pred CCEEEEEeChH--HHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh----cCCCCEEEecHHHH
Confidence 46788889987 778887777642 367899999999999887643 346799999973
Q ss_pred ---c-ccc-cCCCCCcEEEE
Q psy17587 82 ---A-ARG-LDVKHLNLVVN 96 (231)
Q Consensus 82 ---~-~~G-ldip~v~~VI~ 96 (231)
+ .++ ..+.++++||.
T Consensus 111 ~~LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 111 YLMLTSRARETLRGVETVII 130 (1490)
T ss_pred HHHHhhhhhhhhccCCEEEE
Confidence 2 222 35778898886
No 233
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=70.22 E-value=5.1 Score=27.96 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.++..+||||.+-. .+...+..|...|+. +..+.|++.
T Consensus 59 ~~~~~ivv~c~~g~--~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 59 AEDKPFVFYCASGW--RSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCCeEEEEcCCCC--cHHHHHHHHHHcChHHhEeecCcHH
Confidence 46789999998752 366777888888986 788888874
No 234
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=69.99 E-value=11 Score=37.79 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=38.3
Q ss_pred eEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 22 TIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 22 ~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
.++|.++++ ..+.+.++.+.. .|+++.++.|+++..++...+ ..+|+++|+-
T Consensus 137 ~v~IVTpTr--ELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg 192 (970)
T PRK12899 137 PVHLVTVND--YLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS 192 (970)
T ss_pred CeEEEeCCH--HHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 355567765 667777776643 478999999999988876443 3789999975
No 235
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=69.84 E-value=7.3 Score=28.00 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=29.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
+++.||++|++- ..+...+..|...|++ +..+.|++.
T Consensus 77 ~~~~iv~yc~~g--~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSG--VTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcH--HHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 578899999985 3477788889899985 778888863
No 236
>PRK01415 hypothetical protein; Validated
Probab=69.83 E-value=6.6 Score=33.03 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=33.9
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHH
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQY 59 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 59 (231)
...++++|++||.+-.+ ++..+..|.+.|++ +..+.||+..-
T Consensus 167 ~~~k~k~Iv~yCtgGiR--s~kAa~~L~~~Gf~~Vy~L~GGi~~w 209 (247)
T PRK01415 167 ELLKGKKIAMVCTGGIR--CEKSTSLLKSIGYDEVYHLKGGILQY 209 (247)
T ss_pred hhcCCCeEEEECCCChH--HHHHHHHHHHcCCCcEEEechHHHHH
Confidence 34567899999988644 89999999999996 88899997544
No 237
>PTZ00424 helicase 45; Provisional
Probab=69.62 E-value=32 Score=30.42 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=47.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc------ccccCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA------ARGLDV 88 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~Gldi 88 (231)
...++||+++++ +.+.++.+.+... +..+....|+....+. .+.+.+ ..+|+|+|+-. ...+.+
T Consensus 95 ~~~~~lil~Pt~--~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~l 168 (401)
T PTZ00424 95 NACQALILAPTR--ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKA-GVHMVVGTPGRVYDMIDKRHLRV 168 (401)
T ss_pred CCceEEEECCCH--HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcC-CCCEEEECcHHHHHHHHhCCccc
Confidence 456788899987 7788888776543 4556677787765432 334444 36899999732 234567
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
..+++||.
T Consensus 169 ~~i~lvVi 176 (401)
T PTZ00424 169 DDLKLFIL 176 (401)
T ss_pred ccccEEEE
Confidence 78887775
No 238
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=69.15 E-value=9.9 Score=30.86 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=52.1
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCe---eeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPC---LSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~---~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
.+....|.+.|.....++++++++.... -..|.+.|...|+.+ .+|.- .+........+.|..+.+++++-|+
T Consensus 101 ~~~s~~L~~~l~~~~~~~~vl~~~g~~~---~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ftS 176 (231)
T PF02602_consen 101 EGSSEGLAELLKEQLRGKRVLILRGEGG---RPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFTS 176 (231)
T ss_dssp SSSHHHHHGGHHHCCTTEEEEEEESSSS---CHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEESS
T ss_pred CCCHHHHHHHHHhhCCCCeEEEEcCCCc---cHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEECC
Confidence 4556777888876555688887776532 477888998888554 35555 6677888888889888877666554
Q ss_pred c
Q psy17587 81 V 81 (231)
Q Consensus 81 ~ 81 (231)
.
T Consensus 177 ~ 177 (231)
T PF02602_consen 177 P 177 (231)
T ss_dssp H
T ss_pred H
Confidence 3
No 239
>KOG0343|consensus
Probab=68.26 E-value=13 Score=35.08 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=40.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+-.+||.++++ +.+-++.+.|.+. ++++..+-||..-. .+.-+-..++|||||+
T Consensus 141 GlGalIISPTR--ELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 141 GLGALIISPTR--ELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTP 198 (758)
T ss_pred CceeEEecchH--HHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEech
Confidence 45667788977 8899999999754 58888888887533 3344556789999996
No 240
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=67.90 E-value=39 Score=23.72 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=38.3
Q ss_pred eEEEEcCC-hhHH--HHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccccc-CCCC
Q psy17587 22 TIVDFKNG-KVRL--LVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGL-DVKH 90 (231)
Q Consensus 22 ~iiiF~~~-~~~~--~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gl-dip~ 90 (231)
+|++.|.+ .... .+..+-+.+.+.|+++-..|...+.- .... ...+++++|.-+...+ ++|.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~------~~~~-~~~D~iv~t~~~~~~~~~ip~ 69 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI------ETYM-DGVHLICTTARVDRSFGDIPL 69 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHH------hhhc-CCCCEEEECCccccccCCCCE
Confidence 67878866 2111 24666677788899988888665422 1111 4568888887665555 3553
No 241
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=67.88 E-value=7.7 Score=27.22 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=27.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
++.+|++|.+-. .+...+..|...|+. +..+.||++
T Consensus 65 ~~~vv~~c~~g~--~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHK--HAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCc--cHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 678898998753 367777888888986 778999874
No 242
>KOG0329|consensus
Probab=67.63 E-value=8.7 Score=32.68 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=57.7
Q ss_pred hhhhhccccccCC---CCeEEEEcCChhHHHHHHHHHHHHH-----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDR---DSTIVDFKNGKVRLLVCAIVKELMK-----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~---~~~iiiF~~~~~~~~~~~l~~~L~~-----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
...++.-|++.++ .-.+++.|.++ +.+-++.+.... .+.++..+.||++-..-.+.+ ++ -..|+|+
T Consensus 94 avfvl~tlqqiepv~g~vsvlvmchtr--elafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~l---k~-~PhivVg 167 (387)
T KOG0329|consen 94 AVFVLATLQQIEPVDGQVSVLVMCHTR--ELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELL---KN-CPHIVVG 167 (387)
T ss_pred eeeehhhhhhcCCCCCeEEEEEEeccH--HHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHH---hC-CCeEEEc
Confidence 3344555666665 34677789977 778888876542 378899999999866544444 33 6789999
Q ss_pred cC------ccccccCCCCCcEEEE
Q psy17587 79 TS------VAARGLDVKHLNLVVN 96 (231)
Q Consensus 79 T~------~~~~Gldip~v~~VI~ 96 (231)
|+ +-.+.+++.+|.+-|.
T Consensus 168 TPGrilALvr~k~l~lk~vkhFvl 191 (387)
T KOG0329|consen 168 TPGRILALVRNRSLNLKNVKHFVL 191 (387)
T ss_pred CcHHHHHHHHhccCchhhcceeeh
Confidence 98 3345678878776554
No 243
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=67.50 E-value=9.2 Score=27.74 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=29.5
Q ss_pred cCCCCeEEEEcCC-hhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 17 YDRDSTIVDFKNG-KVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~-~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
..+++.||+||++ - ..+...+..|...|++ +..+.||+.
T Consensus 76 ~~~~~~vv~~c~~g~--~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 76 ISNDDTVVVYDDGGG--FFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCCCEEEEECCCCC--ccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 3457899999987 3 2366677788888876 888889874
No 244
>PRK05320 rhodanese superfamily protein; Provisional
Probab=66.33 E-value=9.6 Score=32.20 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCH
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQ 58 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 58 (231)
+++.|++||.+-.+ ++..+..|...|++ +..+.||+..
T Consensus 174 kdk~IvvyC~~G~R--s~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIR--CEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHH--HHHHHHHHHHcCCcceEEeccCHHH
Confidence 57889999998634 88899999999995 8899999854
No 245
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=65.67 E-value=8.4 Score=27.02 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=26.2
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHH-----HHHCCC-CeeeccCCCC
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKE-----LMKAGY-PCLSLHGGID 57 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~-----L~~~~~-~~~~lhg~~~ 57 (231)
.....+..||+||.+. ......+.. |...|+ ++..+.||+.
T Consensus 62 ~~~~~~~~iv~yc~~~--~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 62 KKIDKDKDIVFYCSSG--WRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp HGSTTTSEEEEEESSS--CHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred ccccccccceeeeecc--cccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 4445677899999543 113333333 777787 8889999864
No 246
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=65.03 E-value=16 Score=33.83 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=52.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC------ccccccCCCC
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS------VAARGLDVKH 90 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~------~~~~Gldip~ 90 (231)
+++|+-.+++ -.+.+=+..+.+. .-.+..+.|..++++|...+. +.+|+|+|+ +.+-=+|+.+
T Consensus 59 ~kvlfLAPTK--PLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~d 131 (542)
T COG1111 59 GKVLFLAPTK--PLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDD 131 (542)
T ss_pred CeEEEecCCc--hHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHH
Confidence 3788778886 5566666665432 346789999999999987765 357999995 3444489999
Q ss_pred CcEEEEecC
Q psy17587 91 LNLVVNYDC 99 (231)
Q Consensus 91 v~~VI~~d~ 99 (231)
+.++|.-..
T Consensus 132 v~~lifDEA 140 (542)
T COG1111 132 VSLLIFDEA 140 (542)
T ss_pred ceEEEechh
Confidence 998886443
No 247
>KOG0383|consensus
Probab=64.64 E-value=2.8 Score=40.37 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=60.0
Q ss_pred chhhhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC---CCccEEEecCc
Q psy17587 6 PCLSLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN---GKVRLLIATSV 81 (231)
Q Consensus 6 k~~~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~---g~~~vLvaT~~ 81 (231)
|+..|...++... .+.+|+||..- +...+.|-.++.-.+ ....+.|..+..+|+.++..|.. .....|.||.+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~--~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQM--IHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHH--HHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 4455555555444 37899999984 477888888887777 88899999999999999999983 35778999988
Q ss_pred cccc
Q psy17587 82 AARG 85 (231)
Q Consensus 82 ~~~G 85 (231)
.+-|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 7655
No 248
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=64.63 E-value=14 Score=36.44 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=38.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH----HHHCCCCeeeccCCCC-HHHHHHHHHHHhCCCccEEEecC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKE----LMKAGYPCLSLHGGID-QYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~----L~~~~~~~~~lhg~~~-~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
.+..+.|.++++ ..+...++. +...|+++.++.|+++ +.+|.... ..+|+++|+
T Consensus 118 ~G~~v~VvTpt~--~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 118 EGKGVHLITVND--YLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred cCCCeEEEeCCH--HHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 466777788775 455555444 4456999999999999 88777442 378999984
No 249
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=63.87 E-value=14 Score=26.87 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.+|++|++- ..+...+..|...|+. +..+.||+.
T Consensus 62 ~~~~~ivv~C~~G--~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSG--NRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCC--ccHHHHHHHHHHCCCCeEEECcCcee
Confidence 4578899999875 3377788889999986 666888875
No 250
>PLN02160 thiosulfate sulfurtransferase
Probab=63.04 E-value=14 Score=27.79 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.||++|.+-.+ ....+..|...|++ +..+.||+.
T Consensus 79 ~~~~~IivyC~sG~R--S~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGAR--SLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHH--HHHHHHHHHHcCCCCeeecCCcHH
Confidence 457889999988644 67778888888985 777889874
No 251
>KOG0385|consensus
Probab=62.89 E-value=22 Score=34.84 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=49.3
Q ss_pred hhhhccccccCC-CCeEEEEcCChhHHHHHHHHHHHHH--CCCCeeeccCCCCHHHHHHHHHHHh-CCCccEEEecC
Q psy17587 8 LSLHGGIDQYDR-DSTIVDFKNGKVRLLVCAIVKELMK--AGYPCLSLHGGIDQYDRDSTIVDFK-NGKVRLLIATS 80 (231)
Q Consensus 8 ~~L~~~L~~~~~-~~~iiiF~~~~~~~~~~~l~~~L~~--~~~~~~~lhg~~~~~~R~~~~~~F~-~g~~~vLvaT~ 80 (231)
.+++.+|+.+.. .+..+|.|+-. +...+...+.+ .++++.++||+ +++|....+.+. .|..+|+|+|-
T Consensus 204 Is~l~yl~~~~~~~GPfLVi~P~S---tL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 204 ISLLGYLKGRKGIPGPFLVIAPKS---TLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred HHHHHHHHHhcCCCCCeEEEeeHh---hHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 356677776554 56677688752 36666666654 37999999997 588888888854 67899998874
No 252
>KOG0335|consensus
Probab=61.83 E-value=20 Score=33.04 Aligned_cols=70 Identities=23% Similarity=0.323 Sum_probs=49.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccccc-cCCCC
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAARG-LDVKH 90 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~G-ldip~ 90 (231)
.+++|..+++ +.++++++.-++. +..+....|+.+ ......+-...++|+|||+ +.++| +.+++
T Consensus 153 P~~lIlapTR--eL~~Qi~nea~k~~~~s~~~~~~~ygg~~----~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~ 226 (482)
T KOG0335|consen 153 PRALILAPTR--ELVDQIYNEARKFSYLSGMKSVVVYGGTD----LGAQLRFIKRGCDILVATPGRLKDLIERGKISLDN 226 (482)
T ss_pred CceEEEeCcH--HHhhHHHHHHHhhcccccceeeeeeCCcc----hhhhhhhhccCccEEEecCchhhhhhhcceeehhh
Confidence 6788899987 8899999986543 566677777732 2223345567899999994 56666 66777
Q ss_pred CcEEEE
Q psy17587 91 LNLVVN 96 (231)
Q Consensus 91 v~~VI~ 96 (231)
+.++|.
T Consensus 227 ~k~~vL 232 (482)
T KOG0335|consen 227 CKFLVL 232 (482)
T ss_pred CcEEEe
Confidence 776553
No 253
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=60.95 E-value=58 Score=24.63 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=43.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCC-----CCeeeccCCCCHHHHHHHHHHHhCCCccEEEec-----Cccccc-cCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAG-----YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIAT-----SVAARG-LDV 88 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~-----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT-----~~~~~G-ldi 88 (231)
..++++.+++. ..+.++.+.+.... .....+++... ...+..+.++...++++| +....+ .+.
T Consensus 54 ~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~ 127 (201)
T smart00487 54 GKRVLVLVPTR--ELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLEL 127 (201)
T ss_pred CCcEEEEeCCH--HHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCH
Confidence 46788788876 56777777776543 33445555433 334555666667999998 333333 355
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
..++++|.
T Consensus 128 ~~~~~iIi 135 (201)
T smart00487 128 SNVDLVIL 135 (201)
T ss_pred hHCCEEEE
Confidence 55666554
No 254
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=60.45 E-value=20 Score=25.69 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=27.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
.+..+|++|++- ..+...+..|...|++.....||+.
T Consensus 59 ~~~~IVlyC~~G--~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 59 KNDTVKLYCNAG--RQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCCeEEEEeCCC--hHHHHHHHHHHHcCCCeEEecCCHH
Confidence 356799999875 3367778888888988666678754
No 255
>PRK13767 ATP-dependent helicase; Provisional
Probab=60.05 E-value=23 Score=35.37 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH---------------C-CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK---------------A-GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~---------------~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
+.++|+.++.+ ..+.++.+.|.. . ++.+...||+.+..++.+.+. ...+|+|+|+---
T Consensus 84 ~~~~LyIsPtr--aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTPE~L 157 (876)
T PRK13767 84 KVYCLYVSPLR--ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTPESL 157 (876)
T ss_pred CeEEEEEcCHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecHHHH
Confidence 34688788977 777777664431 1 567889999999888765443 3578999997311
Q ss_pred ------cc--cCCCCCcEEEE
Q psy17587 84 ------RG--LDVKHLNLVVN 96 (231)
Q Consensus 84 ------~G--ldip~v~~VI~ 96 (231)
.. -.+.++++||.
T Consensus 158 ~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 158 AILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHhcChhHHHHHhcCCEEEE
Confidence 11 13567787775
No 256
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=58.99 E-value=40 Score=31.42 Aligned_cols=72 Identities=11% Similarity=0.205 Sum_probs=46.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccc-cccCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAA-RGLDV 88 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~-~Gldi 88 (231)
.+..+||.++++ +.+.++.+.+... ++.+..+.|+.+..+.. ...+. ..+|+|+|+ .+. .++++
T Consensus 195 ~~~~aLIL~PTr--eLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~-~~~IiV~TPgrL~~~l~~~~~~l 268 (518)
T PLN00206 195 RNPLAMVLTPTR--ELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ-GVELIVGTPGRLIDLLSKHDIEL 268 (518)
T ss_pred CCceEEEEeCCH--HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC-CCCEEEECHHHHHHHHHcCCccc
Confidence 356788889987 7788777665432 46677777776654432 22333 478999995 333 35677
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
..+.+||.
T Consensus 269 ~~v~~lVi 276 (518)
T PLN00206 269 DNVSVLVL 276 (518)
T ss_pred hheeEEEe
Confidence 77777664
No 257
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=58.52 E-value=1.1e+02 Score=28.38 Aligned_cols=53 Identities=8% Similarity=-0.162 Sum_probs=27.7
Q ss_pred cCChhHHHHHHHHHHHHHCCC---CeeeccCCCCHHHHHHH-------HHHHhC-CCccEEEec
Q psy17587 27 KNGKVRLLVCAIVKELMKAGY---PCLSLHGGIDQYDRDST-------IVDFKN-GKVRLLIAT 79 (231)
Q Consensus 27 ~~~~~~~~~~~l~~~L~~~~~---~~~~lhg~~~~~~R~~~-------~~~F~~-g~~~vLvaT 79 (231)
|..+.++..+.+.+.+..... -+++-.+++|+-+|..+ -+-|+. ...+||+--
T Consensus 181 iGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~ 244 (463)
T PRK09280 181 VGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFI 244 (463)
T ss_pred eccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 334444444444444433222 23455677888888654 344766 555666543
No 258
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=57.41 E-value=24 Score=23.33 Aligned_cols=40 Identities=30% Similarity=0.338 Sum_probs=30.1
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
...++..+|++|++. ..+...+..|...|+ ++..+-||+.
T Consensus 46 ~~~~~~~vv~~c~~~--~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 46 ELDKDKPIVVYCRSG--NRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred ccCCCCeEEEEeCCC--chHHHHHHHHHHhCcccEEEecCChh
Confidence 345678999999875 447888899988865 4667888764
No 259
>KOG0338|consensus
Probab=57.30 E-value=33 Score=32.12 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=49.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHH---H-CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-------cccccCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELM---K-AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-------AARGLDV 88 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~---~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-------~~~Gldi 88 (231)
--+++|.|+++ +.+-+++.-.+ . ..+.++..-|||+-..+..++.. ..+|+|||+- =+.+.|+
T Consensus 252 ~TRVLVL~PTR--ELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~l 325 (691)
T KOG0338|consen 252 ATRVLVLVPTR--ELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNL 325 (691)
T ss_pred ceeEEEEeccH--HHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccc
Confidence 46899999986 65555555433 2 26889999999998777666543 5789999973 2456666
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
.++.+.|.
T Consensus 326 dsiEVLvl 333 (691)
T KOG0338|consen 326 DSIEVLVL 333 (691)
T ss_pred cceeEEEe
Confidence 66666554
No 260
>KOG0345|consensus
Probab=56.85 E-value=28 Score=32.18 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=49.8
Q ss_pred eEEEEcCChhHHHHHHHHHHHH----H-CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----cccc---ccCC
Q psy17587 22 TIVDFKNGKVRLLVCAIVKELM----K-AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAAR---GLDV 88 (231)
Q Consensus 22 ~iiiF~~~~~~~~~~~l~~~L~----~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~---Gldi 88 (231)
..||.++++ +.+.++.+-+. . .++++..+-||++.+ .-+..|++...+|||+|+ ++.+ ++++
T Consensus 81 galIIsPTR--ELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~ 155 (567)
T KOG0345|consen 81 GALIISPTR--ELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSF 155 (567)
T ss_pred eEEEecCcH--HHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccc
Confidence 456688876 66766665432 2 478899999997654 457788888999999996 3444 5666
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
-+++++|.
T Consensus 156 rsLe~LVL 163 (567)
T KOG0345|consen 156 RSLEILVL 163 (567)
T ss_pred cccceEEe
Confidence 67777664
No 261
>COG1204 Superfamily II helicase [General function prediction only]
Probab=56.82 E-value=15 Score=36.05 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=54.8
Q ss_pred chhhhhccccccCC-CCeEEEEcCChhHHHHHHHHHHHH---HCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-
Q psy17587 6 PCLSLHGGIDQYDR-DSTIVDFKNGKVRLLVCAIVKELM---KAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS- 80 (231)
Q Consensus 6 k~~~L~~~L~~~~~-~~~iiiF~~~~~~~~~~~l~~~L~---~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~- 80 (231)
.+..++-.++.... +.++|..|+.+ ..+++.++.+. ..|+++..++|+++.... .-.+.+|+|+|.
T Consensus 61 TlIA~lai~~~l~~~~~k~vYivPlk--ALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~-------~l~~~~ViVtT~E 131 (766)
T COG1204 61 TLIALLAILSTLLEGGGKVVYIVPLK--ALAEEKYEEFSRLEELGIRVGISTGDYDLDDE-------RLARYDVIVTTPE 131 (766)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeChH--HHHHHHHHHhhhHHhcCCEEEEecCCcccchh-------hhccCCEEEEchH
Confidence 34455555555544 57888778977 77888888887 779999999999874321 135688999995
Q ss_pred ---ccccccC--CCCCcEEEE
Q psy17587 81 ---VAARGLD--VKHLNLVVN 96 (231)
Q Consensus 81 ---~~~~Gld--ip~v~~VI~ 96 (231)
.+-|--+ +.+|++||.
T Consensus 132 K~Dsl~R~~~~~~~~V~lvVi 152 (766)
T COG1204 132 KLDSLTRKRPSWIEEVDLVVI 152 (766)
T ss_pred HhhHhhhcCcchhhcccEEEE
Confidence 2222222 336777664
No 262
>KOG0350|consensus
Probab=56.52 E-value=31 Score=32.15 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=50.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHH-HHHHHHHHhCCCccEEEecCc-------cccccC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYD-RDSTIVDFKNGKVRLLIATSV-------AARGLD 87 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~-R~~~~~~F~~g~~~vLvaT~~-------~~~Gld 87 (231)
--++||.++++ +.+.+++..+... |+.|..+.|.-+-++ -.+....-....++|||+|+- .-.|+|
T Consensus 215 ~LRavVivPtr--~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~ 292 (620)
T KOG0350|consen 215 RLRAVVIVPTR--ELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFD 292 (620)
T ss_pred ceEEEEEeeHH--HHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcc
Confidence 35777789977 7788888887643 777777877655432 222222233346799999973 367888
Q ss_pred CCCCcEEEE
Q psy17587 88 VKHLNLVVN 96 (231)
Q Consensus 88 ip~v~~VI~ 96 (231)
+.+..+.|.
T Consensus 293 Lk~LrfLVI 301 (620)
T KOG0350|consen 293 LKHLRFLVI 301 (620)
T ss_pred hhhceEEEe
Confidence 888887664
No 263
>KOG0334|consensus
Probab=56.12 E-value=39 Score=34.01 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=42.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+...||-|+++ +.+.+|.+.+.. .++.+.+..|+-... +-+...+.| ..|+|||+
T Consensus 438 GPi~li~aPtr--ela~QI~r~~~kf~k~l~ir~v~vygg~~~~---~qiaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 438 GPIALILAPTR--ELAMQIHREVRKFLKLLGIRVVCVYGGSGIS---QQIAELKRG-AEIVVCTP 496 (997)
T ss_pred CceEEEEcCCH--HHHHHHHHHHHHHHhhcCceEEEecCCccHH---HHHHHHhcC-CceEEecc
Confidence 56677789987 888888887654 488999999987544 456777888 89999985
No 264
>PRK01172 ski2-like helicase; Provisional
Probab=55.70 E-value=15 Score=35.37 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=45.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHH---CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----cccc-cCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMK---AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AARG-LDV 88 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~G-ldi 88 (231)
..+.++|+.++.+ ..+.+.++.+.. .|..+...+|+.+.... +. ...+|+|+|+- ..++ ..+
T Consensus 63 ~~~~k~v~i~P~r--aLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~------~~-~~~dIiv~Tpek~~~l~~~~~~~l 133 (674)
T PRK01172 63 LAGLKSIYIVPLR--SLAMEKYEELSRLRSLGMRVKISIGDYDDPPD------FI-KRYDVVILTSEKADSLIHHDPYII 133 (674)
T ss_pred HhCCcEEEEechH--HHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh------hh-ccCCEEEECHHHHHHHHhCChhHH
Confidence 3456778788876 778888877653 47888888898764321 11 24689999972 2222 335
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
.++++||.
T Consensus 134 ~~v~lvVi 141 (674)
T PRK01172 134 NDVGLIVA 141 (674)
T ss_pred hhcCEEEE
Confidence 66777664
No 265
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=55.50 E-value=25 Score=28.91 Aligned_cols=70 Identities=9% Similarity=0.011 Sum_probs=39.3
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee---eccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL---SLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~---~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
+....|.+.+... ..++++++++.... -+.|.+.|...|+.+. +|.-...+.......+.+.++.+++++
T Consensus 102 ~~~e~L~~~~~~~~~~~~~vL~~rg~~~---r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~ 175 (240)
T PRK09189 102 GDGVRLAETVAAALAPTARLLYLAGRPR---APVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVL 175 (240)
T ss_pred CCHHHHHHHHHHhcCCCCcEEEeccCcc---cchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEE
Confidence 3445566665444 35788887776542 4788888988887653 332222222223445566665554443
No 266
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=54.70 E-value=75 Score=26.02 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=35.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHH
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDF 68 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 68 (231)
-+.+.||+|.. .+.+.+.+...++..+-+||..+++.-...-...
T Consensus 53 ~~~VgVf~n~~----~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 53 VKVVGVFVNES----IEEILEIAEELGLDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred CCEEEEECCCC----HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc
Confidence 46889999965 6777788878889999999999988755555554
No 267
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=54.41 E-value=24 Score=27.43 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.||+||.+-. ......+..|...|++ +..+.||+.
T Consensus 114 ~~d~~IVvYC~~G~-~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 114 DKDRPLVFYCLADC-WMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCCEEEEEECCCC-HHHHHHHHHHHhcCCcceEEecCCHH
Confidence 46789999998641 1255577778888886 778899874
No 268
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=53.60 E-value=32 Score=34.41 Aligned_cols=58 Identities=5% Similarity=-0.121 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCh--hHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 19 RDSTIVDFKNGK--VRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 19 ~~~~iiiF~~~~--~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
.+..+-|.+.+. ....++.+...+...|+++.++.+++++.+|..++. ++|+.+|...
T Consensus 122 ~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e 181 (913)
T PRK13103 122 SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNNE 181 (913)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEcccc
Confidence 345555455542 013355666666677999999999999999998887 7888888653
No 269
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=53.42 E-value=31 Score=24.54 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=26.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGI 56 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~ 56 (231)
.+..+|++|++- ..+...+..|...|+.....-||+
T Consensus 57 ~~~~vvlyC~~G--~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAG--RQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCC--HHHHHHHHHHHHcCCCeEEecCCH
Confidence 456788899875 336777888989998755545775
No 270
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=53.13 E-value=15 Score=25.74 Aligned_cols=43 Identities=28% Similarity=0.280 Sum_probs=25.8
Q ss_pred HHHHHHCCCC----eeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 39 VKELMKAGYP----CLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 39 ~~~L~~~~~~----~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
+++|...|+. +..++.+-.+..+..+++.+++|+++++|.|.-
T Consensus 23 a~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 23 AKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 4677788888 344444423334457899999999887776654
No 271
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=53.00 E-value=21 Score=26.15 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=25.5
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHHHHC------------CC-CeeeccCCCC
Q psy17587 18 DRDSTIVDFKN-GKVRLLVCAIVKELMKA------------GY-PCLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~-~~~~~~~~~l~~~L~~~------------~~-~~~~lhg~~~ 57 (231)
.++..+|++|. +-.+ ....+..|... |+ ++..+.||+.
T Consensus 66 ~~~~~vv~yC~~sg~r--s~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 66 KKRRVLIFHCEFSSKR--GPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCCEEEEECCCcccc--HHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 45788999996 5322 55555666542 55 6889999875
No 272
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=52.92 E-value=19 Score=25.21 Aligned_cols=38 Identities=37% Similarity=0.535 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee-eccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL-SLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~-~lhg~~~ 57 (231)
..++.++++|.+-.+ ...-+..|...|+... .+.|++.
T Consensus 59 ~~~~~ivv~C~~G~r--S~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 59 PDDDPIVVYCASGVR--SAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCCeEEEEeCCCCC--hHHHHHHHHHcCCccccccCCcHH
Confidence 457899999988634 6788888999998887 7777764
No 273
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=52.39 E-value=21 Score=31.15 Aligned_cols=39 Identities=26% Similarity=0.481 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHH
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQY 59 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 59 (231)
++++|++||.+-.+ +...+..|...|++ +..+.||+..-
T Consensus 170 kdk~IvvyC~~G~R--s~~aa~~L~~~Gf~~V~~L~GGi~~w 209 (314)
T PRK00142 170 KDKKVVMYCTGGIR--CEKASAWMKHEGFKEVYQLEGGIITY 209 (314)
T ss_pred CcCeEEEECCCCcH--HHHHHHHHHHcCCCcEEEecchHHHH
Confidence 57899999988644 77788889899995 88999998654
No 274
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=52.16 E-value=33 Score=34.06 Aligned_cols=54 Identities=9% Similarity=0.029 Sum_probs=37.8
Q ss_pred CCeEEEEcCChhHHHHHHHHH----HHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVK----ELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~----~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
+..+-|.+++. ..+..-++ .....|+++.++.|++++.+|...+. .+|+++|+.
T Consensus 122 G~~V~IvTpn~--yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 122 GKGVHVVTVND--YLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred CCCEEEEecCH--HHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc
Confidence 33455567664 34444444 44556999999999999999888854 788888864
No 275
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=51.51 E-value=61 Score=26.94 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=43.9
Q ss_pred CCchhhhhcc--cccc--CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee---eccCCCCHHHHHHHHHHHhCCCccEE
Q psy17587 4 GYPCLSLHGG--IDQY--DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL---SLHGGIDQYDRDSTIVDFKNGKVRLL 76 (231)
Q Consensus 4 ~~k~~~L~~~--L~~~--~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~---~lhg~~~~~~R~~~~~~F~~g~~~vL 76 (231)
++....|+++ +... ..+.++++++.... -+.|.+.|...|+.+. +|.-..+........+.+..+.++++
T Consensus 110 ~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~---r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v 186 (255)
T PRK05752 110 GDDSEALLALPALRQALAVPDPRVLIMRGEGG---RELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGL 186 (255)
T ss_pred CCCcHHHHhChhhhccccCCCCEEEEEccCcc---HHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEE
Confidence 3444556555 3332 35678886665542 4679999999887754 33323333334556677777776666
Q ss_pred EecC
Q psy17587 77 IATS 80 (231)
Q Consensus 77 vaT~ 80 (231)
+-|+
T Consensus 187 ~ftS 190 (255)
T PRK05752 187 VVSS 190 (255)
T ss_pred EECC
Confidence 5553
No 276
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=50.86 E-value=66 Score=27.81 Aligned_cols=110 Identities=9% Similarity=0.005 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHH------------HHH-hC--CCccEEEecCc-
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTI------------VDF-KN--GKVRLLIATSV- 81 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~------------~~F-~~--g~~~vLvaT~~- 81 (231)
..+-.++|.+++. ...+.+-..|...++...-+.|.+-..+....- ... .. ....|-++|+-
T Consensus 115 ~~~~~ilIv~~~~--k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~ 192 (297)
T PF11496_consen 115 EYPLHILIVSRSG--KELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQ 192 (297)
T ss_dssp TSSEEEEEEE-ST--HHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS-
T ss_pred cCCceEEEEecCc--cHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCcc
Confidence 3357888888876 668999899988888888888876655544333 011 11 23445444443
Q ss_pred cccc----cCCCCCcEEEEecCCCCH-hHHHHHhcccCCCCCceeEEEEeccc
Q psy17587 82 AARG----LDVKHLNLVVNYDCPNHY-EDYVHRCGRTGRAGNKGFAYTFITLE 129 (231)
Q Consensus 82 ~~~G----ldip~v~~VI~~d~P~~~-~~y~qr~GR~gR~g~~g~~i~~~~~~ 129 (231)
.... .+-..+++||-+|.-.++ ...+|++-..+|.++....+.++...
T Consensus 193 l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~n 245 (297)
T PF11496_consen 193 LYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPSN 245 (297)
T ss_dssp --TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEETT
T ss_pred ccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeCC
Confidence 3332 222367899999987653 34566664444443445556555544
No 277
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=49.81 E-value=1.5e+02 Score=24.56 Aligned_cols=87 Identities=8% Similarity=0.124 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCChh---------HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC----CccEEEecCcccc
Q psy17587 18 DRDSTIVDFKNGKV---------RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG----KVRLLIATSVAAR 84 (231)
Q Consensus 18 ~~~~~iiiF~~~~~---------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~vLvaT~~~~~ 84 (231)
.+.+.+||+.|... ..-++.|.+.|+..|+.| .++-.++..+-.+.+.+|.+. ..+++++. .++-
T Consensus 6 ~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sH 83 (241)
T smart00115 6 KPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV-HVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSH 83 (241)
T ss_pred CCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCC
Confidence 34567777887642 134889999999999987 457789999999999999763 34555554 6677
Q ss_pred ccCCCCCcEEEEecC-CCCHhHHHHHh
Q psy17587 85 GLDVKHLNLVVNYDC-PNHYEDYVHRC 110 (231)
Q Consensus 85 Gldip~v~~VI~~d~-P~~~~~y~qr~ 110 (231)
|. .+.|+-.|- +-++.+.....
T Consensus 84 G~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 84 GE----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred CC----CCeEEEecCCEEEHHHHHHhc
Confidence 73 266766665 55666666655
No 278
>PRK00254 ski2-like helicase; Provisional
Probab=49.73 E-value=22 Score=34.55 Aligned_cols=69 Identities=26% Similarity=0.282 Sum_probs=47.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH---CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----cccc-cCCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK---AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AARG-LDVK 89 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~G-ldip 89 (231)
.+.++|+.++.+ ..+.+..+.+.. .|+++..++|+.+...+ + .+..+|+|+|+- +..+ ..+.
T Consensus 67 ~~~~~l~l~P~~--aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~-~~~~~IiV~Tpe~~~~ll~~~~~~l~ 137 (720)
T PRK00254 67 EGGKAVYLVPLK--ALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE------W-LGKYDIIIATAEKFDSLLRHGSSWIK 137 (720)
T ss_pred cCCeEEEEeChH--HHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh------h-hccCCEEEEcHHHHHHHHhCCchhhh
Confidence 356788788977 778888877753 47899999999875432 1 256789999952 2211 3456
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
++.+||.
T Consensus 138 ~l~lvVi 144 (720)
T PRK00254 138 DVKLVVA 144 (720)
T ss_pred cCCEEEE
Confidence 7787775
No 279
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=49.67 E-value=59 Score=29.25 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=45.1
Q ss_pred CCCeEEEE---cCChhHHHHHHHHHHHHHCC---CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 19 RDSTIVDF---KNGKVRLLVCAIVKELMKAG---YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 19 ~~~~iiiF---~~~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
.++.+||+ +.+- .++...++.|+..| +.+.+.||-++ .-..+..+.|.+|.+.-+++||..
T Consensus 263 ~gr~vIIVDDII~TG--~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 263 EGKDVLIVDDMIASG--GSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred CCCEEEEEeCCcCcH--HHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 35567766 3443 45778888888776 45667899998 666667777888989999999985
No 280
>KOG1133|consensus
Probab=49.37 E-value=2.6e+02 Score=27.43 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=47.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHCC-------CCeeeccCCCCHHHHHHHHHHHh----CCCccEEEe--cCccccccC
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKAG-------YPCLSLHGGIDQYDRDSTIVDFK----NGKVRLLIA--TSVAARGLD 87 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~~-------~~~~~lhg~~~~~~R~~~~~~F~----~g~~~vLva--T~~~~~Gld 87 (231)
..||+|.++. +...++.+.+...| .+.+++-..-+. ..+++.|. .|.-.+|+| =--+++|||
T Consensus 630 gGvV~FfPSy--~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~~---~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 630 GGVVCFFPSY--AYLGQVRKRWEQNGILARIVGKKKVFYEPKDTV---EDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CcEEEEeccH--HHHHHHHHHHHhcchHHHhhccchhhccCcccH---HHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 6777799987 66777777775443 333444444442 34455554 344456654 456889999
Q ss_pred CCC--CcEEEEecCCC
Q psy17587 88 VKH--LNLVVNYDCPN 101 (231)
Q Consensus 88 ip~--v~~VI~~d~P~ 101 (231)
+.+ ++.||-..+|.
T Consensus 705 F~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPY 720 (821)
T ss_pred cccccccEEEEeecCC
Confidence 984 55788777775
No 281
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=49.10 E-value=86 Score=23.84 Aligned_cols=85 Identities=9% Similarity=0.036 Sum_probs=52.3
Q ss_pred hhhhccccccC---CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 8 LSLHGGIDQYD---RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 8 ~~L~~~L~~~~---~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
..+.++|++++ .+++++|+=.+. ...+-++..|...|..+...|..... +++. -...+|+|+.--...
T Consensus 13 ~a~~~ll~~~~~~~~gk~v~VvGrs~--~vG~pla~lL~~~gatV~~~~~~t~~------l~~~-v~~ADIVvsAtg~~~ 83 (140)
T cd05212 13 KAVKELLNKEGVRLDGKKVLVVGRSG--IVGAPLQCLLQRDGATVYSCDWKTIQ------LQSK-VHDADVVVVGSPKPE 83 (140)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCc--hHHHHHHHHHHHCCCEEEEeCCCCcC------HHHH-HhhCCEEEEecCCCC
Confidence 44566666664 478899887776 56999999999999999999975431 1111 124566655333222
Q ss_pred ccCC---CCCcEEEEecCCC
Q psy17587 85 GLDV---KHLNLVVNYDCPN 101 (231)
Q Consensus 85 Gldi---p~v~~VI~~d~P~ 101 (231)
-++- ..=.+||.+++..
T Consensus 84 ~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 84 KVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred ccCHHHcCCCCEEEEcCCCc
Confidence 2332 2224667666654
No 282
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=48.71 E-value=28 Score=23.97 Aligned_cols=42 Identities=31% Similarity=0.368 Sum_probs=27.5
Q ss_pred HHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 39 VKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 39 ~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
+++|...|+++..+|..... .+..+.+.+++|+++.+|.|..
T Consensus 23 a~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 23 AKFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCC
Confidence 35667788876434433321 2245888899999888888764
No 283
>KOG0351|consensus
Probab=48.68 E-value=46 Score=33.57 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=45.3
Q ss_pred eEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC--CccEEEecC
Q psy17587 22 TIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG--KVRLLIATS 80 (231)
Q Consensus 22 ~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLvaT~ 80 (231)
-.||..+= ...++.-...|...++.+.++||+++..+|..+++.+.+| .++||--|+
T Consensus 306 itvVISPL--~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 306 VTVVISPL--ISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred ceEEeccH--HHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 44445553 3556666666678899999999999999999999999999 888887775
No 284
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=48.40 E-value=10 Score=26.74 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=41.1
Q ss_pred EEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHH------------HHHHHHHHHhCCCccEEEecCccccccCC
Q psy17587 24 VDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQY------------DRDSTIVDFKNGKVRLLIATSVAARGLDV 88 (231)
Q Consensus 24 iiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~------------~R~~~~~~F~~g~~~vLvaT~~~~~Gldi 88 (231)
||.+.+. ..+..+.+.|...+..+....|.+-.. .+.+.+.+.-.+.-.|++|||.-.+|-.+
T Consensus 2 liIvE~p--s~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~I 76 (100)
T PF01751_consen 2 LIIVEKP--SDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGELI 76 (100)
T ss_dssp EEEESSH--HHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHHH
T ss_pred EEEEeCH--HHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHHHH
Confidence 4567777 558888888865556777777764322 22455555545667899999987777544
No 285
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=48.28 E-value=1.1e+02 Score=24.30 Aligned_cols=55 Identities=9% Similarity=0.194 Sum_probs=39.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
.++-++=.+. ..++.+.+.|... ++.+...||-+++.+...++++.+....++|+
T Consensus 49 ~~vfllG~~~--~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 49 LPIFLYGGKP--DVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVF 105 (177)
T ss_pred CeEEEECCCH--HHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 3555333434 6788888888765 67766669999988888888888876666554
No 286
>KOG0340|consensus
Probab=48.05 E-value=64 Score=28.88 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=44.6
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+++-|.+...+--.+||++++ +.+-++++.+... +.++..+.|+|+.-..... -.....++|+|+
T Consensus 65 il~rLsedP~giFalvlTPTr--ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~----L~~rPHvVvatP 133 (442)
T KOG0340|consen 65 ILNRLSEDPYGIFALVLTPTR--ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAI----LSDRPHVVVATP 133 (442)
T ss_pred HHHhhccCCCcceEEEecchH--HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhh----cccCCCeEecCc
Confidence 344455555566777799977 8899999998654 6889999999864332222 245667888875
No 287
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=47.56 E-value=44 Score=32.84 Aligned_cols=55 Identities=9% Similarity=0.007 Sum_probs=37.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHH----HHCCCCeeeccCC-----CCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKEL----MKAGYPCLSLHGG-----IDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L----~~~~~~~~~lhg~-----~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
.+..++|.++++ ..+...++.+ ...|+++.+.+++ +.+.+|..+. ..+|+++|+-
T Consensus 110 ~g~~V~VVTpn~--yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y------~~dIvygTp~ 173 (762)
T TIGR03714 110 TGKGAMLVTTND--YLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIY------NSDIVYTTNS 173 (762)
T ss_pred cCCceEEeCCCH--HHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhC------CCCEEEECch
Confidence 355677788876 6666666665 4568998887664 6666655432 3788888874
No 288
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=47.11 E-value=25 Score=26.63 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=35.7
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEE
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLV 94 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~V 94 (231)
+.+..+.+++|+|... .+++.|.+.|-...-....=|+-.... ......|+++++... -..+..+++
T Consensus 24 k~~~~g~rv~V~~~d~--~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~~~~~~vL 90 (137)
T PF04364_consen 24 KAYRQGQRVLVLCPDE--EQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NPNNHADVL 90 (137)
T ss_dssp HHHHTT--EEEE-SSH--HHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS------S--SEE
T ss_pred HHHHcCCeEEEEeCCH--HHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CCCCCCCEE
Confidence 3445588999999987 779999999866543334444332111 112247999887643 223335789
Q ss_pred EEecCC
Q psy17587 95 VNYDCP 100 (231)
Q Consensus 95 I~~d~P 100 (231)
||.+..
T Consensus 91 inL~~~ 96 (137)
T PF04364_consen 91 INLSGE 96 (137)
T ss_dssp EE--SS
T ss_pred EECCCC
Confidence 987654
No 289
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=45.02 E-value=35 Score=27.06 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=24.6
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeecc
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLH 53 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lh 53 (231)
......|+++||+......+..+++.|...|++++.+.
T Consensus 78 ~lt~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 78 ELTETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp ---TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 34567899999988666678899999999988877666
No 290
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=44.93 E-value=78 Score=20.49 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=34.6
Q ss_pred EEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 24 VDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 24 iiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
++.|.+. ..+..+.+... .+..+....|.....+....+.++... ..|++++|--..|
T Consensus 3 l~ivEg~--~da~~~~~~~~-~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 3 LIIVEGP--ADAIALEKAGG-FGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEcCH--HHHHHHHHhcC-CCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 4467766 33555555542 234566666766555666666666544 5688888864444
No 291
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=44.63 E-value=68 Score=26.06 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=30.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHH
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYD 60 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 60 (231)
.+++.||++.. .+.+.+.+...++.++-+||..++..
T Consensus 53 ~~~VgVf~~~~----~~~i~~~~~~~~~d~vQLHG~e~~~~ 89 (207)
T PRK13958 53 IDKVCVVVNPD----LTTIEHILSNTSINTIQLHGTESIDF 89 (207)
T ss_pred CCEEEEEeCCC----HHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 46899999964 77888888888999999999988665
No 292
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=43.40 E-value=71 Score=25.88 Aligned_cols=41 Identities=7% Similarity=-0.020 Sum_probs=25.2
Q ss_pred hhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee
Q psy17587 7 CLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL 50 (231)
Q Consensus 7 ~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~ 50 (231)
...+...|... ..++++++.+... ..+.+.+.|.+.|..+.
T Consensus 111 ~~~l~~~l~~~~~~~~~ili~~~~~---~~~~l~~~L~~~G~~v~ 152 (249)
T PRK05928 111 SSELLLELPELLLKGKRVLYLRGNG---GREVLGDTLEERGAEVD 152 (249)
T ss_pred ChHHHHhChhhhcCCCEEEEECCCC---CHHHHHHHHHHCCCEEe
Confidence 33444555444 3567788666654 35778888888776544
No 293
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=42.23 E-value=93 Score=26.28 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=44.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCC---CCeeeccCC-CCHHHHHHHHHHHhCCCccEEEecCc------cccccCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAG---YPCLSLHGG-IDQYDRDSTIVDFKNGKVRLLIATSV------AARGLDVK 89 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~---~~~~~lhg~-~~~~~R~~~~~~F~~g~~~vLvaT~~------~~~Gldip 89 (231)
...+||.|.+-.| +..|...|+... ..+.-+-+. +.-++....+ +.+.++|.|+|+. -.-.+.+.
T Consensus 126 sP~~lvvs~SalR--a~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L---~~~~~~i~vGTP~Rl~kLle~~~L~l~ 200 (252)
T PF14617_consen 126 SPHVLVVSSSALR--AADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLL---KKTRVHIAVGTPGRLSKLLENGALSLS 200 (252)
T ss_pred CCEEEEEcchHHH--HHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHH---HhCCceEEEeChHHHHHHHHcCCCCcc
Confidence 3567778887645 888888887652 344433333 3444444444 4568899999973 23346666
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
+..+||.
T Consensus 201 ~l~~ivl 207 (252)
T PF14617_consen 201 NLKRIVL 207 (252)
T ss_pred cCeEEEE
Confidence 7666653
No 294
>KOG0327|consensus
Probab=42.22 E-value=24 Score=31.55 Aligned_cols=68 Identities=7% Similarity=-0.146 Sum_probs=51.8
Q ss_pred HHHHhCCCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHH
Q psy17587 65 IVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERH 133 (231)
Q Consensus 65 ~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~ 133 (231)
..-++....++..|+.-...+.+-..+.-+.++-.+.++....+++.|- ..+..+..+.++...++..
T Consensus 115 ~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmL 182 (397)
T KOG0327|consen 115 RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEML 182 (397)
T ss_pred HhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhh
Confidence 4445667888999998888888887777777888888999999999774 6666777777776655543
No 295
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=40.99 E-value=1.4e+02 Score=23.28 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=39.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHC--CCCee-eccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKA--GYPCL-SLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~-~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
.++-++=.+. +.++.+.+.|... ++.+. ..||-+++.+-..+++..+....++++
T Consensus 49 ~~ifllG~~~--~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 49 KRIFLLGGSE--EVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred CeEEEEeCCH--HHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 4555344444 6788888888765 67766 566768888999999999877766554
No 296
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=40.28 E-value=42 Score=28.47 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.||+||++-. .+..++-.|...|++ +..+.|++.
T Consensus 229 ~~~~~ii~yC~~G~--~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 229 SFDRPIIASCGSGV--TAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred CCCCCEEEECCcHH--HHHHHHHHHHHcCCCCceeeCCCHH
Confidence 45678999998763 367777778888885 889999864
No 297
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.19 E-value=1.8e+02 Score=22.72 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=38.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC--CCCeee-ccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLS-LHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~-lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
+.++.++-.+. +.++.+.+.|... ++.+.. .||-+...+...+++..+....++++
T Consensus 46 ~~~v~llG~~~--~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 46 GLRVFLLGAKP--EVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred CCeEEEECCCH--HHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 45666454544 6688888888765 677555 78888888877788888776655544
No 298
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=39.52 E-value=64 Score=32.19 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=35.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC---------------------------CCCeeeccCCCCHHHHHHHHHHHhCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA---------------------------GYPCLSLHGGIDQYDRDSTIVDFKNGK 72 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~---------------------------~~~~~~lhg~~~~~~R~~~~~~F~~g~ 72 (231)
.+++|+.|+++ +.++++++.+... ++++..++||.+..... .... ..
T Consensus 62 ~~rLv~~vPtR--eLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---~~l~-~~ 135 (844)
T TIGR02621 62 PRRLVYVVNRR--TVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---MLDP-HR 135 (844)
T ss_pred cceEEEeCchH--HHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---HhcC-CC
Confidence 45666455876 7788777765432 36788999998755432 2222 35
Q ss_pred ccEEEecC
Q psy17587 73 VRLLIATS 80 (231)
Q Consensus 73 ~~vLvaT~ 80 (231)
..|+|+|.
T Consensus 136 p~IIVgT~ 143 (844)
T TIGR02621 136 PAVIVGTV 143 (844)
T ss_pred CcEEEECH
Confidence 68999994
No 299
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=39.40 E-value=1.5e+02 Score=26.51 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=44.5
Q ss_pred hhhhhccccccCCCCeEEEEcCChhH--HHHHHHHHHHHHCCCCeeeccCCC---CHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVR--LLVCAIVKELMKAGYPCLSLHGGI---DQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~--~~~~~l~~~L~~~~~~~~~lhg~~---~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|-+.++.+. ++++|++..... ...+.+.+.|...++.+..+.+.- +..+-.+..+.+++...+++|+
T Consensus 11 l~~l~~~~~~~g--~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIa 85 (386)
T cd08191 11 RRQLPRLAARLG--SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIG 85 (386)
T ss_pred HHHHHHHHHHcC--CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 445555666554 667767654222 245677778888888877665554 3444555667777777787776
No 300
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=39.37 E-value=45 Score=29.50 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=30.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.++++|++- ..+...+..|...|+. +..+.||+.
T Consensus 312 ~~~~~IvvyC~~G--~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 312 SAGDEVVVYCAAG--VRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCCeEEEEcCCC--HHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 4568899999886 3477888889888986 778999974
No 301
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=39.21 E-value=33 Score=34.04 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=41.5
Q ss_pred CCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCC
Q psy17587 71 GKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRA 116 (231)
Q Consensus 71 g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~ 116 (231)
...+.+++--++-+|-|-|+|=.++=.....+..+=.|.+||.-|-
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 4578999999999999999999888888888999999999998884
No 302
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=39.14 E-value=72 Score=27.23 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=49.6
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc-cc
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR-GL 86 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~-Gl 86 (231)
..|-+.+.+.......|||++-.+ ++++.|++.+....---.+++|....-.| ..|+.+++|-.+...+ =-
T Consensus 167 elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~-------~~Gkk~~~ies~~s~eeL~ 238 (300)
T COG4152 167 ELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRR-------SFGKKRLVIESDLSLEELA 238 (300)
T ss_pred HHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHH-------hcCCceEEEeccCchHHHh
Confidence 445566666666667777987654 47999999986443344567776432211 1477888887665544 45
Q ss_pred CCCCCcEEE
Q psy17587 87 DVKHLNLVV 95 (231)
Q Consensus 87 dip~v~~VI 95 (231)
++|.+..+.
T Consensus 239 ~ipgi~~~~ 247 (300)
T COG4152 239 NIPGILKIT 247 (300)
T ss_pred cCCCceeee
Confidence 666655443
No 303
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=38.93 E-value=2.4e+02 Score=23.79 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=20.1
Q ss_pred ccEEEecCccccccCCCCCcEEEEecCCCCHhHHH
Q psy17587 73 VRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYV 107 (231)
Q Consensus 73 ~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~ 107 (231)
..+++-+|...++. .++++||.++......|.
T Consensus 104 ~~l~~iDD~~~~~~---~~D~vin~~~~~~~~~y~ 135 (279)
T TIGR03590 104 RKILVIDDLADRPH---DCDLLLDQNLGADASDYQ 135 (279)
T ss_pred CeEEEEecCCCCCc---CCCEEEeCCCCcCHhHhc
Confidence 35566666655544 568899887765555553
No 304
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=38.63 E-value=1.2e+02 Score=26.83 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=35.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHh
Q psy17587 19 RDSTIVDFKN-GKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFK 69 (231)
Q Consensus 19 ~~~~iiiF~~-~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~ 69 (231)
+++.+||||. +-.+ +..++..|...|+.+..+.||+..- |...+..+.
T Consensus 87 ~~~~ivvyC~rgG~R--S~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLR--SGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChH--HHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHh
Confidence 5788999994 4333 6777888888899999999998654 455555554
No 305
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=37.61 E-value=49 Score=28.82 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=29.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHHHHCCCCeeeccCCCCHH
Q psy17587 19 RDSTIVDFKN-GKVRLLVCAIVKELMKAGYPCLSLHGGIDQY 59 (231)
Q Consensus 19 ~~~~iiiF~~-~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 59 (231)
.++.+|+||. +-.+ ....+..|...|+++..+.||+..-
T Consensus 73 ~~~~vvvyC~~gG~R--S~~aa~~L~~~G~~v~~L~GG~~aw 112 (311)
T TIGR03167 73 GPPQPLLYCWRGGMR--SGSLAWLLAQIGFRVPRLEGGYKAY 112 (311)
T ss_pred CCCcEEEEECCCChH--HHHHHHHHHHcCCCEEEecChHHHH
Confidence 3455888994 4323 7777888989999999999997543
No 306
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=37.09 E-value=1.1e+02 Score=24.44 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=24.1
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL 50 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~ 50 (231)
+....|...|... ..+.++++++... .-..+.+.|...|..+.
T Consensus 106 ~~~~~L~~~i~~~~~~~~~il~~~g~~---~~~~l~~~L~~~g~~v~ 149 (239)
T cd06578 106 GDSEGLLELLELQDGKGKRILRPRGGR---AREDLAEALRERGAEVD 149 (239)
T ss_pred cCHHHHHHHHHhcCCCCCEEEEEcCcc---hhHHHHHHHHHCCCEEE
Confidence 3345566666555 3456666555543 23566677766665544
No 307
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=36.90 E-value=47 Score=29.84 Aligned_cols=42 Identities=29% Similarity=0.441 Sum_probs=32.4
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCH
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQ 58 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 58 (231)
....+++.+|++|.+-. .+...+..|...|++ +..+.||+..
T Consensus 338 ~~l~~d~~iVvyC~~G~--rS~~aa~~L~~~G~~~V~~L~GG~~~ 380 (392)
T PRK07878 338 AKLPQDRTIVLYCKTGV--RSAEALAALKKAGFSDAVHLQGGVVA 380 (392)
T ss_pred hhCCCCCcEEEEcCCCh--HHHHHHHHHHHcCCCcEEEecCcHHH
Confidence 44556789999998763 377788889999985 7889998743
No 308
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=36.74 E-value=38 Score=34.23 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=40.4
Q ss_pred CccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCC
Q psy17587 72 KVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRA 116 (231)
Q Consensus 72 ~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~ 116 (231)
..+.+++-+++.+|-|-|++-.+.-..-..+...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 678999999999999999998888888778888889999998885
No 309
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=36.53 E-value=1.4e+02 Score=30.34 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=47.3
Q ss_pred hCCCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCC----ceeEEEEec
Q psy17587 69 KNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGN----KGFAYTFIT 127 (231)
Q Consensus 69 ~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~----~g~~i~~~~ 127 (231)
.....++||.+|.+--|-|-|.++ ++..|-|.-.-..+|.+.|+.|.-. .|..+.|..
T Consensus 590 ~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 590 KDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred cCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 456799999999999999999754 5678899989999999999999732 366666655
No 310
>PRK07411 hypothetical protein; Validated
Probab=36.22 E-value=56 Score=29.34 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=31.9
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCH
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQ 58 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~ 58 (231)
...+++.||++|.+-.+ +...+..|+..|++...+.||+..
T Consensus 338 ~l~~d~~IVvyC~~G~R--S~~aa~~L~~~G~~~~~l~GG~~~ 378 (390)
T PRK07411 338 ELLNGHRLIAHCKMGGR--SAKALGILKEAGIEGTNVKGGITA 378 (390)
T ss_pred hcCCCCeEEEECCCCHH--HHHHHHHHHHcCCCeEEecchHHH
Confidence 34457889999988644 777888999999998888888643
No 311
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=36.00 E-value=3.6e+02 Score=24.97 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=7.7
Q ss_pred HhHHHHHhccc
Q psy17587 103 YEDYVHRCGRT 113 (231)
Q Consensus 103 ~~~y~qr~GR~ 113 (231)
...++.|+|+.
T Consensus 305 l~~l~ERag~~ 315 (455)
T PRK07960 305 LPALVERAGNG 315 (455)
T ss_pred hhHHHHHHhcC
Confidence 45667788874
No 312
>KOG0342|consensus
Probab=35.77 E-value=1.5e+02 Score=27.71 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=35.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHH---HHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKEL---MKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L---~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+-.+||.|+++ +.+-+++..+ ... ++.+..+-||-. +..-.+.... .+++||||+
T Consensus 154 ~~~vlIi~PTR--ELA~Q~~~eak~Ll~~h~~~~v~~viGG~~---~~~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 154 GTGVLIICPTR--ELAMQIFAEAKELLKYHESITVGIVIGGNN---FSVEADKLVK-GCNILIATP 213 (543)
T ss_pred CeeEEEecccH--HHHHHHHHHHHHHHhhCCCcceEEEeCCcc---chHHHHHhhc-cccEEEeCC
Confidence 45677789986 6666555543 332 466666667643 3334445555 789999996
No 313
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=35.47 E-value=2.5e+02 Score=23.11 Aligned_cols=87 Identities=9% Similarity=0.136 Sum_probs=60.6
Q ss_pred CCCeEEEEcCChh----------HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC---CCccEEEecCccccc
Q psy17587 19 RDSTIVDFKNGKV----------RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN---GKVRLLIATSVAARG 85 (231)
Q Consensus 19 ~~~~iiiF~~~~~----------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~---g~~~vLvaT~~~~~G 85 (231)
+.+.++|+.|... ..-++.|.+.|+..|+.| ..+-.++..+-.+.+.+|.+ ...+.+++. .++-|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 4566777777532 133789999999999987 56778999999999999984 233333333 56667
Q ss_pred cCCCCCcEEEEec-CCCCHhHHHHHhc
Q psy17587 86 LDVKHLNLVVNYD-CPNHYEDYVHRCG 111 (231)
Q Consensus 86 ldip~v~~VI~~d-~P~~~~~y~qr~G 111 (231)
.. +.++-.| -+-++++..+...
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 54 6677677 5666777777664
No 314
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=35.32 E-value=79 Score=22.47 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=23.2
Q ss_pred CCeEEEEcCC---hhHHHHHHHHHHHHHCCC---CeeeccCCCC
Q psy17587 20 DSTIVDFKNG---KVRLLVCAIVKELMKAGY---PCLSLHGGID 57 (231)
Q Consensus 20 ~~~iiiF~~~---~~~~~~~~l~~~L~~~~~---~~~~lhg~~~ 57 (231)
...+|++|.+ +....+..+...|...|+ .+..+.||+.
T Consensus 66 ~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 4678888864 212335566666666665 4667788764
No 315
>PLN02522 ATP citrate (pro-S)-lyase
Probab=35.11 E-value=1.5e+02 Score=28.48 Aligned_cols=65 Identities=8% Similarity=0.142 Sum_probs=48.0
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHHHHHHHHHHHhCCCccEE
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQYDRDSTIVDFKNGKVRLL 76 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~vL 76 (231)
+.+..++...-...|||++-. ...+.+.+.+...|++ ++++.++.+..+..++.+.-++..++|+
T Consensus 69 v~eA~~~~~~~~~~vifvp~~--~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlI 134 (608)
T PLN02522 69 IEAACKAHPTADVFINFASFR--SAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVI 134 (608)
T ss_pred HHHHHHhCCCCcEEEEeCChH--HhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEE
Confidence 334445554568888899977 5689999999888886 6688889988777777777777666654
No 316
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=34.67 E-value=83 Score=22.65 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=11.6
Q ss_pred HHHHHHHhCCCccEEEecC
Q psy17587 62 DSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 62 ~~~~~~F~~g~~~vLvaT~ 80 (231)
..+.+.+++|+++++|.|+
T Consensus 61 ~~i~~~i~~~~idlVIn~~ 79 (116)
T cd01423 61 PSLRELLAEGKIDLVINLP 79 (116)
T ss_pred hhHHHHHHcCCceEEEECC
Confidence 4456666667766666654
No 317
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=34.44 E-value=1.8e+02 Score=23.58 Aligned_cols=38 Identities=18% Similarity=0.023 Sum_probs=31.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHH
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDR 61 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 61 (231)
..++.||++.. .+.+.+.+...++.++-+||..++..-
T Consensus 55 i~~VgVf~~~~----~~~i~~~~~~~~~d~vQLHg~e~~~~~ 92 (210)
T PRK01222 55 VKVVGVFVNAS----DEEIDEIVETVPLDLLQLHGDETPEFC 92 (210)
T ss_pred CCEEEEEeCCC----HHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 57899999854 677888888889999999999887653
No 318
>PHA03371 circ protein; Provisional
Probab=34.28 E-value=36 Score=28.20 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=26.9
Q ss_pred ccccccCCCCCcEE-EEecCCCC-------------HhHHHHHhcccCCCCCc
Q psy17587 81 VAARGLDVKHLNLV-VNYDCPNH-------------YEDYVHRCGRTGRAGNK 119 (231)
Q Consensus 81 ~~~~Gldip~v~~V-I~~d~P~~-------------~~~y~qr~GR~gR~g~~ 119 (231)
+++|-||+|+=+-+ |..|.+.+ --.|+|.+|||--.|..
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~ 81 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSG 81 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCC
Confidence 56788899977766 65555443 44578999998766643
No 319
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=33.58 E-value=3.9e+02 Score=24.74 Aligned_cols=56 Identities=9% Similarity=-0.129 Sum_probs=28.5
Q ss_pred EEEEc--CChhHHHHHHHHHHHHHCC---CCeeeccCCCCHHHHHHH-------HHHHhC-CCccEEEe
Q psy17587 23 IVDFK--NGKVRLLVCAIVKELMKAG---YPCLSLHGGIDQYDRDST-------IVDFKN-GKVRLLIA 78 (231)
Q Consensus 23 iiiF~--~~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~-------~~~F~~-g~~~vLva 78 (231)
++||+ ..+.++..+.+.+.+.... .-+++-.+++|+-.|..+ -+-|+. ...+||+-
T Consensus 174 v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd~~G~~VLll 242 (461)
T TIGR01039 174 YSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLF 242 (461)
T ss_pred eEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEE
Confidence 44454 3344444444444433221 224455777888887654 344776 33466544
No 320
>KOG0352|consensus
Probab=33.16 E-value=1.1e+02 Score=28.17 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=45.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC--CCccEEEecCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN--GKVRLLIATSV 81 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~vLvaT~~ 81 (231)
+.-.|||++=. ..+..=.+.|.....++-.+.+.|+..||.+++.+... ..+.+|--|+-
T Consensus 61 ~gITIV~SPLi--ALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE 122 (641)
T KOG0352|consen 61 GGITIVISPLI--ALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPE 122 (641)
T ss_pred CCeEEEehHHH--HHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchh
Confidence 34566688744 55555556677788999999999999999999999875 45667766654
No 321
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=33.03 E-value=2.1e+02 Score=24.70 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=48.4
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEE
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLL 76 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 76 (231)
++.+.+++. ..+..|||++.. ...+.+.+.+...--.+.++.-+.|..+-.++.+..++....++
T Consensus 56 tV~EA~~~~-~a~~svI~Vp~~--~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~ii 120 (293)
T COG0074 56 TVEEAVKET-GANASVIFVPPP--FAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLI 120 (293)
T ss_pred HHHHHHHhh-CCCEEEEecCcH--HHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEEE
Confidence 445555666 567777799988 55889988886544567899999999998888888876654443
No 322
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=32.86 E-value=2e+02 Score=22.14 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=43.3
Q ss_pred EEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCC
Q psy17587 24 VDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDV 88 (231)
Q Consensus 24 iiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldi 88 (231)
|+.|... .....+++.+.......+|.+|..+.. -...++........+....|.--.||.|
T Consensus 21 V~VvENp--~Vf~~~~~~~~~~~~pLVCt~G~p~~A-~~~LL~~L~~~g~~l~y~GDfDp~Gl~I 82 (152)
T PF09664_consen 21 VYVVENP--AVFSALADELGASCPPLVCTSGQPSAA-ARRLLDRLAAAGARLYYSGDFDPEGLRI 82 (152)
T ss_pred EEEEecH--HHHHHHHHhcCCCCCeEEEcCCcHHHH-HHHHHHHHHhCCCEEEEecCCCHHHHHH
Confidence 4456655 457888888766666777776664444 4467777777777888888888888876
No 323
>TIGR02679 conserved hypothetical protein TIGR02679. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=32.84 E-value=80 Score=28.44 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=20.6
Q ss_pred eeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCC
Q psy17587 49 CLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDV 88 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldi 88 (231)
....+||++..-....++.+.....++.-.=|.-..|+-|
T Consensus 275 ~lIct~G~p~~a~~~LL~~L~~~g~~l~YhGDfD~~Gi~I 314 (385)
T TIGR02679 275 PLVCTDGQPNAAQIKLLDLLAAAGARLYYHGDFDWPGLRI 314 (385)
T ss_pred eEEECCCcchHHHHHHHHHHHhcCCeEEEecCCChhHHHH
Confidence 3455555555555566666554444554444444444443
No 324
>PLN02363 phosphoribosylanthranilate isomerase
Probab=32.60 E-value=1.2e+02 Score=25.68 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=30.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHH
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYD 60 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 60 (231)
.+++.||++.. .+.+.+.+...++.++-+||..++..
T Consensus 100 ~~~VgVfv~~~----~~~I~~~~~~~~ld~VQLHG~e~~~~ 136 (256)
T PLN02363 100 AKPVGVFVDDD----ANTILRAADSSDLELVQLHGNGSRAA 136 (256)
T ss_pred ccEEEEEeCCC----HHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 45799999965 77888888888999999999988654
No 325
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=32.49 E-value=4.6e+02 Score=25.17 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=22.2
Q ss_pred eeeccCCCCHHHHHHHH-------HHHhCCCccEEEecCc
Q psy17587 49 CLSLHGGIDQYDRDSTI-------VDFKNGKVRLLIATSV 81 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~~-------~~F~~g~~~vLvaT~~ 81 (231)
+++-.++|+...|.... +-||....+||+.-|-
T Consensus 294 lVa~tsd~p~~~R~~s~ytg~tiAEYfRD~G~~Vll~~DS 333 (591)
T TIGR01042 294 LVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADS 333 (591)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 44667789988886543 5588666677766554
No 326
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=32.42 E-value=2.2e+02 Score=21.51 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=44.2
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEe-cCccccccCCCCCcE
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIA-TSVAARGLDVKHLNL 93 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLva-T~~~~~Gldip~v~~ 93 (231)
+.+..+.+++|.|.+. +.++.|-+.|-...-....=|+-.... ......|+++ ++. -+.+..++
T Consensus 24 ka~~~g~rv~I~~~d~--~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~~~----~~~~~~~~ 88 (142)
T PRK05728 24 KALRAGWRVLVQCEDE--EQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWPGK----RNANHRDL 88 (142)
T ss_pred HHHHCCCEEEEEcCCH--HHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcCCC----CCCCCCcE
Confidence 4455689999999887 779999999976544444555532211 0234678887 322 23345577
Q ss_pred EEEecC
Q psy17587 94 VVNYDC 99 (231)
Q Consensus 94 VI~~d~ 99 (231)
+||.+.
T Consensus 89 LinL~~ 94 (142)
T PRK05728 89 LINLDG 94 (142)
T ss_pred EEECCC
Confidence 888764
No 327
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=32.34 E-value=2e+02 Score=21.48 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHHHHCCCCeeeccCCCC--HHHHHHHHHHHhCCCccEEEecC
Q psy17587 28 NGKVRLLVCAIVKELMKAGYPCLSLHGGID--QYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 28 ~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~--~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
.+......+.+...|...++.+..+|-+-+ +..-.+..+...+-..-|++.|+
T Consensus 6 hg~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~Tp 60 (125)
T PF10137_consen 6 HGRDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTP 60 (125)
T ss_pred eCCCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcc
Confidence 334446788899999888888887776532 22334444555556777888884
No 328
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=32.27 E-value=3.7e+02 Score=24.39 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=18.6
Q ss_pred eeeccCCCCHHHHHHH-------HHHHhCCCccEEEecC
Q psy17587 49 CLSLHGGIDQYDRDST-------IVDFKNGKVRLLIATS 80 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~-------~~~F~~g~~~vLvaT~ 80 (231)
+++-.++.++-+|..+ -+-|+....+||+--|
T Consensus 196 vv~~tsd~~~~~r~~a~~~a~tiAEyfr~~G~~Vll~~D 234 (411)
T TIGR03496 196 VVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMD 234 (411)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4455567777777643 4457655556665433
No 329
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=32.26 E-value=2.7e+02 Score=26.71 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=40.2
Q ss_pred CCCeEEEEcCC---hhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCC
Q psy17587 19 RDSTIVDFKNG---KVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDV 88 (231)
Q Consensus 19 ~~~~iiiF~~~---~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldi 88 (231)
+..+|++.|.+ .+.-....+-+.|.+.|+++...|.+++.-. =...+.+++|+|..+...++.
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~Vsev~-------s~~~~aDIIVtt~~La~~i~i 570 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAVNDYK-------GKLETIDIIVCSKHLANEIEF 570 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHHHHcCCCeEEEEechHhCc-------ccCCCCCEEEEcccchhhhcc
Confidence 34578888865 2223456777778889999888888765321 112345788888766555543
No 330
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=31.83 E-value=62 Score=28.91 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=59.8
Q ss_pred chhhhhcccc-ccCCCCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 6 PCLSLHGGID-QYDRDSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 6 k~~~L~~~L~-~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
|...++..+. ....+.+|.|-+++. +.|-+|+..|... +..+..+||+-++.- + ..++|||.-=
T Consensus 129 KTEMif~~i~~al~~G~~vciASPRv--DVclEl~~Rlk~aF~~~~I~~Lyg~S~~~f--------r---~plvVaTtHQ 195 (441)
T COG4098 129 KTEMIFQGIEQALNQGGRVCIASPRV--DVCLELYPRLKQAFSNCDIDLLYGDSDSYF--------R---APLVVATTHQ 195 (441)
T ss_pred chhhhHHHHHHHHhcCCeEEEecCcc--cchHHHHHHHHHhhccCCeeeEecCCchhc--------c---ccEEEEehHH
Confidence 4455555553 334567777788877 7799999999764 577889999876543 2 4677777531
Q ss_pred -ccccCCCCCcEEEE---ecCCCCHhHHHHHhcccCCC
Q psy17587 83 -ARGLDVKHLNLVVN---YDCPNHYEDYVHRCGRTGRA 116 (231)
Q Consensus 83 -~~Gldip~v~~VI~---~d~P~~~~~y~qr~GR~gR~ 116 (231)
-|= -...+++|. -.+|.+-+..+|-+-+-+|.
T Consensus 196 LlrF--k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 196 LLRF--KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred HHHH--HhhccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 000 012244443 23677777777777666664
No 331
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=31.70 E-value=2.9e+02 Score=26.81 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=59.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC-CCC-eeec-------------------------cCCCCHHHHHHHHHHHhCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA-GYP-CLSL-------------------------HGGIDQYDRDSTIVDFKNGK 72 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~-~~~-~~~l-------------------------hg~~~~~~R~~~~~~F~~g~ 72 (231)
++.+||.++++ ..+.+|+..|... +-. |..+ .+.--...|..++....++.
T Consensus 54 ~~p~Lvi~~n~--~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~~~R~~al~~L~~~~ 131 (655)
T TIGR00631 54 NRPTLVIAHNK--TLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRHSATRSLLERR 131 (655)
T ss_pred CCCEEEEECCH--HHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHHHHHHHHHHHHHHhCC
Confidence 45677788887 6699999998654 223 4444 11122345788888888777
Q ss_pred ccEEEecCccccccCCCC----CcEEEEecCCCCHhHHHHHhc
Q psy17587 73 VRLLIATSVAARGLDVKH----LNLVVNYDCPNHYEDYVHRCG 111 (231)
Q Consensus 73 ~~vLvaT~~~~~Gldip~----v~~VI~~d~P~~~~~y~qr~G 111 (231)
..|+|||-.+-.|+--|+ ..+.+..+-..+.+.++.+.-
T Consensus 132 ~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv 174 (655)
T TIGR00631 132 DVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLV 174 (655)
T ss_pred CeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHH
Confidence 778888866677776663 345555666666666666553
No 332
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=31.38 E-value=56 Score=27.91 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=46.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCC------CC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVK------HL 91 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip------~v 91 (231)
++.=++||||+.. .-.-...+.++...=.+.++-|.+.. --..++. ..++.+.+|...+|..++ .+
T Consensus 60 Dp~mKaIVv~q~v--pGt~~af~kIkekRpDIl~ia~~~~E--Dp~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~mGA 131 (275)
T PF12683_consen 60 DPDMKAIVVSQAV--PGTAEAFRKIKEKRPDILLIAGEPHE--DPEVISS----AADIVVNPDEISRGYTIVWAAKKMGA 131 (275)
T ss_dssp -TTEEEEEEE-SS-----HHHHHHHHHH-TTSEEEESS--S---HHHHHH----HSSEEEE--HHHHHHHHHHHHHHTT-
T ss_pred CCCccEEEEeCCC--cchHHHHHHHHhcCCCeEEEcCCCcC--CHHHHhh----ccCeEeccchhhccHHHHHHHHHcCC
Confidence 4455677788775 33455555666555566777776432 2233333 368999999999999988 66
Q ss_pred cEEEEecCCCCHh
Q psy17587 92 NLVVNYDCPNHYE 104 (231)
Q Consensus 92 ~~VI~~d~P~~~~ 104 (231)
...|||.+|.+.+
T Consensus 132 ktFVh~sfprhms 144 (275)
T PF12683_consen 132 KTFVHYSFPRHMS 144 (275)
T ss_dssp S-EEEEEETTGGG
T ss_pred ceEEEEechhhcc
Confidence 7899999999876
No 333
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=31.00 E-value=3.2e+02 Score=26.43 Aligned_cols=93 Identities=11% Similarity=0.058 Sum_probs=58.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC-CCC-eeec--------------------cCC-----CCHHHHHHHHHHHhCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA-GYP-CLSL--------------------HGG-----IDQYDRDSTIVDFKNGK 72 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~-~~~-~~~l--------------------hg~-----~~~~~R~~~~~~F~~g~ 72 (231)
++.+||.+++. ..++.+++.|... +-. +..+ +.. --...|..++..+..++
T Consensus 57 ~r~vLIVt~~~--~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~~R~~~l~~L~~~~ 134 (652)
T PRK05298 57 QRPTLVLAHNK--TLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRHSATKSLLERR 134 (652)
T ss_pred CCCEEEEECCH--HHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHHHHHHHHHHHHhCC
Confidence 46788788877 6699999998654 222 4443 111 11345788888888777
Q ss_pred ccEEEecCccccccCCCC----CcEEEEecCCCCHhHHHHHhcccC
Q psy17587 73 VRLLIATSVAARGLDVKH----LNLVVNYDCPNHYEDYVHRCGRTG 114 (231)
Q Consensus 73 ~~vLvaT~~~~~Gldip~----v~~VI~~d~P~~~~~y~qr~GR~g 114 (231)
..|+|+|-.+-.++--|+ ..+.+..+-..+.+.+..+.-..|
T Consensus 135 ~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~~G 180 (652)
T PRK05298 135 DVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVDLQ 180 (652)
T ss_pred CEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHHcC
Confidence 667777765556666553 335555666666777666553333
No 334
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.71 E-value=1.6e+02 Score=25.88 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=44.9
Q ss_pred CCCeEEEE---cCChhHHHHHHHHHHHHHCC---CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 19 RDSTIVDF---KNGKVRLLVCAIVKELMKAG---YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 19 ~~~~iiiF---~~~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
+++.+||. +.+- .++...++.|+..| +.+.+.||=++.....+..+.+.++.++=+++||..
T Consensus 217 ~Gk~VIIVDDIi~TG--~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~~~i~~iv~Tnti 284 (332)
T PRK00553 217 KNKNCLIVDDMIDTG--GTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNSI 284 (332)
T ss_pred CCCEEEEEeccccch--HHHHHHHHHHHHcCCcEEEEEEEeeecCchHHHHHHhccccCCCCEEEEeCCc
Confidence 35667665 4444 45778888888776 456789999987766665555667788889999986
No 335
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=30.68 E-value=75 Score=27.60 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.||+||++-. .+..++-.|...|++ +..+.|++.
T Consensus 267 ~~~~~iv~yC~sG~--~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 267 SLDSPIVASCGTGV--TACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred CCCCCEEEECCcHH--HHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 35788999999853 366666677778875 778999864
No 336
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=30.43 E-value=4.4e+02 Score=24.31 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=25.3
Q ss_pred CChhHHHHHHHHHHHHHCCC---CeeeccCCCCHHHHHH-------HHHHHhCCCccEEEec
Q psy17587 28 NGKVRLLVCAIVKELMKAGY---PCLSLHGGIDQYDRDS-------TIVDFKNGKVRLLIAT 79 (231)
Q Consensus 28 ~~~~~~~~~~l~~~L~~~~~---~~~~lhg~~~~~~R~~-------~~~~F~~g~~~vLvaT 79 (231)
..+.++..+.+.+.+...+. -+++-.++.++-+|.. +-+-|++...+||+--
T Consensus 197 GER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~ 258 (444)
T PRK08972 197 GERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLM 258 (444)
T ss_pred cCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 33434444444444443322 1445556666777653 3344665445665543
No 337
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=30.16 E-value=80 Score=28.07 Aligned_cols=37 Identities=32% Similarity=0.448 Sum_probs=27.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGI 56 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~ 56 (231)
.+++.+|++|++-.+ +...+..|...|++ +..+.||+
T Consensus 55 ~~~~~IvvyC~~G~r--s~~aa~~L~~~G~~~v~~l~GG~ 92 (376)
T PRK08762 55 DRDREIVLICASGTR--SAHAAATLRELGYTRVASVAGGF 92 (376)
T ss_pred CCCCeEEEEcCCCcH--HHHHHHHHHHcCCCceEeecCcH
Confidence 357889999988533 66677888888884 77787764
No 338
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.09 E-value=1.7e+02 Score=25.45 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=41.8
Q ss_pred CCCeEEEE---cCChhHHHHHHHHHHHHHCC---CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 19 RDSTIVDF---KNGKVRLLVCAIVKELMKAG---YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 19 ~~~~iiiF---~~~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
.++.+||. +.+- .++...++.|++.| +.+.+.||=++.. .++++.++.+.=+++||..
T Consensus 216 ~Gr~viIVDDIidTG--~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~----a~~~l~~~~i~~iv~Tdti 279 (320)
T PRK02269 216 KGKKCILIDDMIDTA--GTICHAADALAEAGATEVYASCTHPVLSGP----ALDNIQKSAIEKLVVLDTI 279 (320)
T ss_pred CCCEEEEEeeecCcH--HHHHHHHHHHHHCCCCEEEEEEECcccCch----HHHHHHhCCCCEEEEeCCC
Confidence 46677766 4544 56888899998876 4577999999864 3445566668888888886
No 339
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=30.08 E-value=2.3e+02 Score=21.99 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC-----------CCHHHHHHHHHHHh
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG-----------IDQYDRDSTIVDFK 69 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~-----------~~~~~R~~~~~~F~ 69 (231)
..+..|.+.|...|.++..+.|+ .+.++|.+.+.++.
T Consensus 17 TlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~ 64 (156)
T PF01583_consen 17 TLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIA 64 (156)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHH
Confidence 36889999999999999988663 57888988888753
No 340
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=29.86 E-value=1.8e+02 Score=19.69 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=44.4
Q ss_pred eEEEEcCC-h--hHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccC--CCCCcEEEE
Q psy17587 22 TIVDFKNG-K--VRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLD--VKHLNLVVN 96 (231)
Q Consensus 22 ~iiiF~~~-~--~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gld--ip~v~~VI~ 96 (231)
++++.|.+ . ..-....+.+.+...++.....|.+++.. . .+.+++++|.-+...++ .+++++ |.
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~~---------~-~~~Dliitt~~l~~~~~~~~~~~~v-i~ 70 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDEL---------P-SDADLVVTHASLTDRAKKKAPQAQH-LS 70 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhhC---------C-CCCCEEEEChHHHHHHHhcCCCCeE-EE
Confidence 57778854 2 11224556666777788888888776432 2 46789999977765443 234444 34
Q ss_pred ecCCCCHhHHHH
Q psy17587 97 YDCPNHYEDYVH 108 (231)
Q Consensus 97 ~d~P~~~~~y~q 108 (231)
.+.-.+..+|-.
T Consensus 71 v~~~l~~~ei~~ 82 (87)
T cd05567 71 VDNFLNTPEYDE 82 (87)
T ss_pred EeccCChHHHHH
Confidence 444444444443
No 341
>PHA02653 RNA helicase NPH-II; Provisional
Probab=29.74 E-value=1.9e+02 Score=28.20 Aligned_cols=69 Identities=19% Similarity=0.053 Sum_probs=42.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH-------CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK-------AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLN 92 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~-------~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~ 92 (231)
...++|-++++ +.+.++...+.. .+.++...+|+++...... .. ....++|+|.-.. -.++.+++
T Consensus 222 ~~~ilvt~Prr--eLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t---~~--k~~~Ilv~T~~L~-l~~L~~v~ 293 (675)
T PHA02653 222 ERPIVLSLPRV--ALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINT---NP--KPYGLVFSTHKLT-LNKLFDYG 293 (675)
T ss_pred CcEEEEECcHH--HHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhc---cc--CCCCEEEEeCccc-ccccccCC
Confidence 45777778875 778888887753 1455778899988321111 11 1458999985320 11566788
Q ss_pred EEEE
Q psy17587 93 LVVN 96 (231)
Q Consensus 93 ~VI~ 96 (231)
+||.
T Consensus 294 ~VVI 297 (675)
T PHA02653 294 TVII 297 (675)
T ss_pred EEEc
Confidence 7775
No 342
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=29.36 E-value=2.9e+02 Score=21.92 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=27.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHH
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYD 60 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 60 (231)
..+.+|+|.. .+.+.+.....+...+.+||.-+...
T Consensus 52 ~~V~v~vn~~----~~~i~~ia~~~~~d~Vqlhg~e~~~~ 87 (203)
T cd00405 52 KRVGVFVNED----LEEILEIAEELGLDVVQLHGDESPEY 87 (203)
T ss_pred cEEEEEeCCC----HHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 6788899965 66666666677889999999876544
No 343
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=28.96 E-value=2.1e+02 Score=22.49 Aligned_cols=58 Identities=16% Similarity=0.041 Sum_probs=35.7
Q ss_pred hhccccccCCCCeEEEEcCCh------hHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGK------VRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG 71 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~------~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 71 (231)
.++.+++.....+++|++|+. ....++.+.+.| |+++ ..|+...|.-..++++-|...
T Consensus 67 ~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpv-l~h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 67 WLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---GIPV-LRHRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred HHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh---CCcE-EEeCCCCCccHHHHHHHHhhc
Confidence 344445554556899999972 224466666665 5664 445555556667888888643
No 344
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=28.68 E-value=74 Score=23.33 Aligned_cols=39 Identities=15% Similarity=0.377 Sum_probs=26.9
Q ss_pred CCCeEEEEcCChhH-------HHHHHHHHHHHH---CCCCeeeccCCCC
Q psy17587 19 RDSTIVDFKNGKVR-------LLVCAIVKELMK---AGYPCLSLHGGID 57 (231)
Q Consensus 19 ~~~~iiiF~~~~~~-------~~~~~l~~~L~~---~~~~~~~lhg~~~ 57 (231)
....|||||.+-.. ..+..+.+.|.. .+.++..+.||+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 56889999975311 115667777776 4568999999974
No 345
>KOG0337|consensus
Probab=28.66 E-value=1.4e+02 Score=27.43 Aligned_cols=69 Identities=19% Similarity=0.129 Sum_probs=44.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHh--CCCccEEEecC------ccccccC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFK--NGKVRLLIATS------VAARGLD 87 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~--~g~~~vLvaT~------~~~~Gld 87 (231)
+-+.+|-++++ +.+.+..+.+... +..+.++.|+-+ ..++|. +++.+|++||+ .+.+-++
T Consensus 90 g~Ralilsptr--eLa~qtlkvvkdlgrgt~lr~s~~~ggD~------~eeqf~~l~~npDii~ATpgr~~h~~vem~l~ 161 (529)
T KOG0337|consen 90 GLRALILSPTR--ELALQTLKVVKDLGRGTKLRQSLLVGGDS------IEEQFILLNENPDIIIATPGRLLHLGVEMTLT 161 (529)
T ss_pred ccceeeccCcH--HHHHHHHHHHHHhccccchhhhhhcccch------HHHHHHHhccCCCEEEecCceeeeeehheecc
Confidence 34666677765 5566666655433 455666666544 344454 45678999997 3556678
Q ss_pred CCCCcEEEE
Q psy17587 88 VKHLNLVVN 96 (231)
Q Consensus 88 ip~v~~VI~ 96 (231)
+..|.+||.
T Consensus 162 l~sveyVVf 170 (529)
T KOG0337|consen 162 LSSVEYVVF 170 (529)
T ss_pred ccceeeeee
Confidence 888898885
No 346
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=28.36 E-value=1.1e+02 Score=26.63 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=38.9
Q ss_pred EcCChhHHHHHHHHHHHHHCCCCeeeccCCCCH-HHHHHHHHHHhCCCccEEEecCc
Q psy17587 26 FKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQ-YDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 26 F~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~-~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
|-.+...+.++.+.+.+...+.-...+.|.|.+ .-|.-+..-.+.|-++++|+|-.
T Consensus 35 F~a~~l~~A~~i~~~ml~d~~~ifL~~tg~mvs~Glr~ii~~Li~~~~VD~iVtTga 91 (312)
T PRK01221 35 FMAGHIVRASEILKEMISDADLRFLSFTANLVSTGLRGLIADLIKRGLFNVVITTCG 91 (312)
T ss_pred cchHHHHHHHHHHHHHHcCCCeEEEEecchhHHHHHHHHHHHHHHcCCeeEEEeCCC
Confidence 555544555667777775555456789999954 45655555568999999999976
No 347
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=28.22 E-value=2.3e+02 Score=24.91 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=48.2
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHH--HHHHHHHHHHHCCCCeeecc---CCCCHHHHHHHHHHHhCCCccEEEec
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRL--LVCAIVKELMKAGYPCLSLH---GGIDQYDRDSTIVDFKNGKVRLLIAT 79 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~--~~~~l~~~L~~~~~~~~~lh---g~~~~~~R~~~~~~F~~g~~~vLvaT 79 (231)
+..|-+.++.+ + +++|.|...... ..+.+...|...++.+..+. +.-+..+-.+..+.+++.+.+++|+-
T Consensus 11 l~~l~~~l~~~--g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIai 85 (366)
T PF00465_consen 11 LEELGEELKRL--G-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAI 85 (366)
T ss_dssp GGGHHHHHHCT--T-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhc--C-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEc
Confidence 55666667766 3 777676642222 36778888888888877666 55566677788888888888888874
No 348
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=28.09 E-value=90 Score=26.43 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=24.8
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCC
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGY 47 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~ 47 (231)
....++..+++||++. ++++.+.+.|+..|+
T Consensus 183 ~~Lkpgg~~~~y~P~v--eQv~kt~~~l~~~g~ 213 (256)
T COG2519 183 DALKPGGVVVVYSPTV--EQVEKTVEALRERGF 213 (256)
T ss_pred HHhCCCcEEEEEcCCH--HHHHHHHHHHHhcCc
Confidence 4445778999999987 789999999987653
No 349
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=27.84 E-value=1.3e+02 Score=21.28 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=23.1
Q ss_pred CCCeEEEEcC-C--hhHHHHHHHHHHHHH----CC-CCeeeccCCCCH
Q psy17587 19 RDSTIVDFKN-G--KVRLLVCAIVKELMK----AG-YPCLSLHGGIDQ 58 (231)
Q Consensus 19 ~~~~iiiF~~-~--~~~~~~~~l~~~L~~----~~-~~~~~lhg~~~~ 58 (231)
.+..+||+|+ + +....+..+.+.|.. .| .++..+.||+..
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~ 108 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNA 108 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHH
Confidence 4578898996 3 222234444444432 24 468889998753
No 350
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=27.76 E-value=1.8e+02 Score=24.51 Aligned_cols=71 Identities=11% Similarity=0.147 Sum_probs=38.2
Q ss_pred hhhhhccccccCCCCeEEEEcCCh-hHHHHHHHHHHHHHCCCCeeec---cCCCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGK-VRLLVCAIVKELMKAGYPCLSL---HGGIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~-~~~~~~~l~~~L~~~~~~~~~l---hg~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|-+.|.+... +++++.|... .....+.+.+.|...|+++..+ ++.-+..+-.++.+.++..+.+++|+
T Consensus 7 ~~~l~~~l~~~~~-~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 81 (250)
T PF13685_consen 7 LDKLPEILSELGL-KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIG 81 (250)
T ss_dssp GGGHHHHHGGGT--SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEE
T ss_pred HHHHHHHHHhcCC-CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEE
Confidence 4456666666643 5666666442 2233567778888888888755 34445555556666676556666554
No 351
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=27.52 E-value=5.5e+02 Score=24.56 Aligned_cols=33 Identities=6% Similarity=0.112 Sum_probs=21.7
Q ss_pred eeeccCCCCHHHHHHH-------HHHHhCCCccEEEecCc
Q psy17587 49 CLSLHGGIDQYDRDST-------IVDFKNGKVRLLIATSV 81 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~-------~~~F~~g~~~vLvaT~~ 81 (231)
+++-.++||...|... -+-|+..-.+|++--|-
T Consensus 288 lVanTSn~p~~aR~~s~ytg~TiAEYfRD~G~~Vllm~DS 327 (578)
T TIGR01043 288 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADS 327 (578)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecC
Confidence 4566788998888643 34478666677665443
No 352
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=27.43 E-value=3.1e+02 Score=24.23 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=43.7
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeecc--CCCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLH--GGIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lh--g~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|-+.++.+ +++++|.+..... ..+.+...|...|+.+..+. +.-+.+.-.+..+.+++.+.+++|+
T Consensus 11 ~~~l~~~l~~~--~~r~livtd~~~~-~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 81 (374)
T cd08183 11 AKELPALAAEL--GRRVLLVTGASSL-RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIA 81 (374)
T ss_pred HHHHHHHHHHc--CCcEEEEECCchH-HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 44555666655 3677767765333 57778888888887765543 3233344556666777777777776
No 353
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=27.36 E-value=2.6e+02 Score=23.94 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEec
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIAT 79 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT 79 (231)
+....+.+++...|+.-.++.|. |+.+||.+.++... .|++.|++.+
T Consensus 21 ~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv 76 (294)
T TIGR02313 21 EALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGT 76 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 45667777777888887777775 88999998888764 5777787654
No 354
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=27.34 E-value=1.6e+02 Score=25.80 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=36.8
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEE
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVV 95 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI 95 (231)
.+-.++..+||||.. ...+.+.|.........=.|.. -.+++||
T Consensus 87 ~~l~GnvgliFTn~~----p~ev~~~l~~~k~~a~AraG~I--------------------------------Ap~dVvv 130 (323)
T PTZ00240 87 NLLSGNTGLIFTNNE----VQEITSVLDSHRVKAPARVGAI--------------------------------APCDVIV 130 (323)
T ss_pred ccccCCEEEEEeCCC----HHHHHHHHHHcCCcccccCCCC--------------------------------CCceEEE
Confidence 444567777788754 5666666665544444444433 2334444
Q ss_pred ---EecCCCCHhHHHHHhcccCC
Q psy17587 96 ---NYDCPNHYEDYVHRCGRTGR 115 (231)
Q Consensus 96 ---~~d~P~~~~~y~qr~GR~gR 115 (231)
+..++.+..++.|..|=.-+
T Consensus 131 paG~T~~~P~~~s~fq~LGIpTk 153 (323)
T PTZ00240 131 PAGSTGMEPTQTSFFQALNIATK 153 (323)
T ss_pred CCCCCCCCCcchHHHHHcCCCeE
Confidence 34566667888887755444
No 355
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=27.11 E-value=1.3e+02 Score=22.59 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCh-hHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 19 RDSTIVDFKNGK-VRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 19 ~~~~iiiF~~~~-~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+..||+||++. .-..+-.+.=.|...|++ +..+.|+++
T Consensus 94 ~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 94 LDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred CCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 478899999740 001233444455666765 778888864
No 356
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=27.01 E-value=1.4e+02 Score=25.65 Aligned_cols=66 Identities=5% Similarity=-0.123 Sum_probs=44.3
Q ss_pred EEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCc
Q psy17587 23 IVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLN 92 (231)
Q Consensus 23 iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~ 92 (231)
-+|+|... .+...|...+.- ..+...+|-.-..+.....++....|+. |.+.||+.--++.-|+..
T Consensus 27 d~i~~EDT--R~t~kLL~~~~I-~~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~ISDPG~~ 92 (276)
T TIGR00096 27 DLFAEEDT--RTSKLLLHLGII-ATPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLISDPGHL 92 (276)
T ss_pred CEEEecCc--hhHHHHHHhcCC-CCceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCcCCccHH
Confidence 35588764 456666665522 2345677776666666677777777765 888899998888888543
No 357
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=26.98 E-value=4.2e+02 Score=24.34 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=19.6
Q ss_pred eeeccCCCCHHHHHHH-------HHHHhCCCccEEEecC
Q psy17587 49 CLSLHGGIDQYDRDST-------IVDFKNGKVRLLIATS 80 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~-------~~~F~~g~~~vLvaT~ 80 (231)
+.+.+++.+.-+|... -+-|++...+||+--|
T Consensus 214 ~vv~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~D 252 (433)
T PRK07594 214 IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD 252 (433)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 4566777877777543 3457755556665443
No 358
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.90 E-value=1.4e+02 Score=18.95 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=33.6
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeecc
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLH 53 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lh 53 (231)
+..+...|+....+..+.|.++.. .....+..++...|+.+....
T Consensus 13 l~~~~~~l~~l~~g~~l~v~~d~~--~~~~~i~~~~~~~g~~~~~~~ 57 (69)
T cd00291 13 VLKTKKALEKLKSGEVLEVLLDDP--GAVEDIPAWAKETGHEVLEVE 57 (69)
T ss_pred HHHHHHHHhcCCCCCEEEEEecCC--cHHHHHHHHHHHcCCEEEEEE
Confidence 445666677777788888788765 458889999998888876544
No 359
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=26.90 E-value=92 Score=23.22 Aligned_cols=38 Identities=16% Similarity=0.377 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCccEEEecCccccccCCC------CCcEEEEecC
Q psy17587 62 DSTIVDFKNGKVRLLIATSVAARGLDVK------HLNLVVNYDC 99 (231)
Q Consensus 62 ~~~~~~F~~g~~~vLvaT~~~~~Gldip------~v~~VI~~d~ 99 (231)
.+.+....+|++.+.|-|.--.-|||++ +=++||.||-
T Consensus 64 ~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD~ 107 (144)
T PF10657_consen 64 PEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFDK 107 (144)
T ss_pred HHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEeccC
Confidence 4678889999999999998777788876 2347888873
No 360
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=26.81 E-value=5.3e+02 Score=24.14 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHCC---CC-eeeccCCCCHHHHHHH-------HHHHhCCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAG---YP-CLSLHGGIDQYDRDST-------IVDFKNGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~---~~-~~~lhg~~~~~~R~~~-------~~~F~~g~~~vLvaT~ 80 (231)
..+..+.+.+...+ .. +++-.++.|+-+|..+ -+-|+....+||+--|
T Consensus 203 ~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~D 261 (502)
T PRK09281 203 STVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYD 261 (502)
T ss_pred HHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 34555555555443 12 3344555666666432 3346655556665443
No 361
>PRK08118 topology modulation protein; Reviewed
Probab=26.68 E-value=2.8e+02 Score=21.34 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=40.7
Q ss_pred CeEEEE-cCC--hhHHHHHHHHHHHHHCCCCeeecc-----CCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCc
Q psy17587 21 STIVDF-KNG--KVRLLVCAIVKELMKAGYPCLSLH-----GGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLN 92 (231)
Q Consensus 21 ~~iiiF-~~~--~~~~~~~~l~~~L~~~~~~~~~lh-----g~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~ 92 (231)
++|+|+ +++ +++ .+..|++.+.-..+..-.++ -..++++....++++-+++.-|+=..-......-++.++
T Consensus 2 ~rI~I~G~~GsGKST-lak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~wVidG~~~~~~~~~l~~~d 80 (167)
T PRK08118 2 KKIILIGSGGSGKST-LARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDEWIIDGNYGGTMDIRLNAAD 80 (167)
T ss_pred cEEEEECCCCCCHHH-HHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCCEEEeCCcchHHHHHHHhCC
Confidence 356766 332 433 46666666522211121222 234555666667676655543332221111222246678
Q ss_pred EEEEecCCCC
Q psy17587 93 LVVNYDCPNH 102 (231)
Q Consensus 93 ~VI~~d~P~~ 102 (231)
.||..|.|..
T Consensus 81 ~vi~Ld~p~~ 90 (167)
T PRK08118 81 TIIFLDIPRT 90 (167)
T ss_pred EEEEEeCCHH
Confidence 9999999954
No 362
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=26.66 E-value=2.2e+02 Score=20.78 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=34.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
.+-+|-|++ . +.+....+...+.|.+++.=.-|+++++.. .++++.+ ++.++++.+
T Consensus 68 ~DVvIDfT~-p--~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~-~l~~~a~-~~~vl~a~N 123 (124)
T PF01113_consen 68 ADVVIDFTN-P--DAVYDNLEYALKHGVPLVIGTTGFSDEQID-ELEELAK-KIPVLIAPN 123 (124)
T ss_dssp -SEEEEES--H--HHHHHHHHHHHHHT-EEEEE-SSSHHHHHH-HHHHHTT-TSEEEE-SS
T ss_pred CCEEEEcCC-h--HHhHHHHHHHHhCCCCEEEECCCCCHHHHH-HHHHHhc-cCCEEEeCC
Confidence 457777874 3 456777777777788888877778666554 4444433 388888765
No 363
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=26.56 E-value=2.4e+02 Score=19.98 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=35.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHH
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDF 68 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 68 (231)
+.+.. |-.++ ++.+.+.....+..++.+...++|.+.....+.+
T Consensus 36 ~p~~~-iG~GK----~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~ 79 (95)
T PF13167_consen 36 DPKTY-IGSGK----VEEIKELIEELDADLVVFDNELSPSQQRNLEKAL 79 (95)
T ss_pred Cccee-echhH----HHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHH
Confidence 44444 66666 8889998888899999999999999887777777
No 364
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=26.56 E-value=3.4e+02 Score=23.21 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=15.7
Q ss_pred eeeccCCCCHHHHHHH-------HHHHhCC-CccEEE
Q psy17587 49 CLSLHGGIDQYDRDST-------IVDFKNG-KVRLLI 77 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~-------~~~F~~g-~~~vLv 77 (231)
+++-.++.++.+|..+ -+-|+.. ..+||+
T Consensus 131 vv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~ 167 (274)
T cd01133 131 LVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLL 167 (274)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3455566777777543 3446643 445544
No 365
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=26.53 E-value=5.2e+02 Score=23.90 Aligned_cols=58 Identities=7% Similarity=-0.094 Sum_probs=29.2
Q ss_pred EEEEc--CChhHHHHHHHHHHHHHCC--CC-eeeccCCCCHHHHHH-------HHHHHh-CCCccEEEecC
Q psy17587 23 IVDFK--NGKVRLLVCAIVKELMKAG--YP-CLSLHGGIDQYDRDS-------TIVDFK-NGKVRLLIATS 80 (231)
Q Consensus 23 iiiF~--~~~~~~~~~~l~~~L~~~~--~~-~~~lhg~~~~~~R~~-------~~~~F~-~g~~~vLvaT~ 80 (231)
++||+ ..+.++..+.+.+.+.... .. +++-.+++|+-.|.. +-+-|+ +...+||+--|
T Consensus 177 v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli~D 247 (460)
T PRK04196 177 AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKGMHVLVILT 247 (460)
T ss_pred EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 45554 3344444444444443322 22 334566688888763 334588 44456665443
No 366
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=26.43 E-value=40 Score=29.20 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHH
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQY 59 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 59 (231)
.+++|+-||++--| |+..+.+|...|++ |..++||.-..
T Consensus 171 ~~KkVvmyCTGGIR--CEKas~~m~~~GF~eVyhL~GGIl~Y 210 (308)
T COG1054 171 KDKKVVMYCTGGIR--CEKASAWMKENGFKEVYHLEGGILKY 210 (308)
T ss_pred cCCcEEEEcCCcee--ehhhHHHHHHhcchhhhcccchHHHH
Confidence 46799999998644 99999999999985 88999996433
No 367
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=26.33 E-value=3.3e+02 Score=24.08 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=44.9
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHH--HHHHHHHHHHHCCCCeeeccC---CCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRL--LVCAIVKELMKAGYPCLSLHG---GIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~--~~~~l~~~L~~~~~~~~~lhg---~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|-+.++... .++++|++...... ..+.+.+.|...++.+..+.+ .-+.+.-.+..+.++....+++|+
T Consensus 11 ~~~l~~~~~~~~-~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 86 (375)
T cd08194 11 VDETGAVLADLG-GKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIA 86 (375)
T ss_pred HHHHHHHHHHcC-CCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 445555555443 35666666543222 357788888888887765543 344455667777888888888875
No 368
>PF13245 AAA_19: Part of AAA domain
Probab=26.28 E-value=97 Score=20.68 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=22.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHG 54 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg 54 (231)
+++|++.+.+. ..++.+.+.| ..+.. +..+|+
T Consensus 42 ~~~vlv~a~t~--~aa~~l~~rl-~~~~~~~~T~h~ 74 (76)
T PF13245_consen 42 GKRVLVLAPTR--AAADELRERL-GLGVPFAMTIHS 74 (76)
T ss_pred CCeEEEECCCH--HHHHHHHHHH-cCCCcchhhHHH
Confidence 67888788877 6789998888 33333 555553
No 369
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=26.24 E-value=2.4e+02 Score=23.33 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=43.2
Q ss_pred CchhhhhccccccCC-CCeEEEEcCChhHHHHHHHHHHHHHCCCCeee---ccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 5 YPCLSLHGGIDQYDR-DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLS---LHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~-~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~---lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+....|++.+..... ++++++...... .+.+.+.|...|+.+.. |...-...........+..+.+++++-|+
T Consensus 107 ~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS 183 (248)
T COG1587 107 GDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTS 183 (248)
T ss_pred cchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeC
Confidence 445566667766655 477776655432 47888888888876553 22222222233445566777766665544
Q ss_pred c
Q psy17587 81 V 81 (231)
Q Consensus 81 ~ 81 (231)
.
T Consensus 184 ~ 184 (248)
T COG1587 184 S 184 (248)
T ss_pred H
Confidence 3
No 370
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.18 E-value=1.4e+02 Score=21.26 Aligned_cols=42 Identities=10% Similarity=0.211 Sum_probs=27.7
Q ss_pred ccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCC
Q psy17587 14 IDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGG 55 (231)
Q Consensus 14 L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~ 55 (231)
+....++..+|+|..+........+.+.+++.|.+++.+.+.
T Consensus 48 ~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 48 LENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp GGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCC
Confidence 555666777787875533344555555778888888877754
No 371
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=26.16 E-value=3.5e+02 Score=24.36 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=44.5
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHH--HHHHHHHHHHHCCCCeeeccC---CCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRL--LVCAIVKELMKAGYPCLSLHG---GIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~--~~~~l~~~L~~~~~~~~~lhg---~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|-+.++++.. ++++|.+.....+ ..+.+.+.|...|+.+..+.+ .-+.+.-.+..+.+++.+.+++|+
T Consensus 11 ~~~l~~~l~~~g~-~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 86 (414)
T cd08190 11 TAEVGMDLKNLGA-RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVA 86 (414)
T ss_pred HHHHHHHHHHcCC-CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 4455566666543 5666565442122 257788888888888776653 334445566777788877787776
No 372
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=25.95 E-value=2.6e+02 Score=23.80 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|+.-.++-|. |+.+||.++++... .|+..|++.+.
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~ 82 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG 82 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 45677788888889888877765 99999999998754 57788887753
No 373
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.93 E-value=2.5e+02 Score=20.09 Aligned_cols=37 Identities=5% Similarity=-0.130 Sum_probs=24.1
Q ss_pred CeEEEEcCCh--hHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 21 STIVDFKNGK--VRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 21 ~~iiiF~~~~--~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
++|+++|.+- +.-.++.+-+.+...|+++..-+.+.+
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~ 40 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITAT 40 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHH
Confidence 3678888662 223455665666778888887777654
No 374
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=25.89 E-value=1.9e+02 Score=23.06 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=27.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHH
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYD 60 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 60 (231)
...+.||.+.. .+.+.+.+...++.++-+||..+.+.
T Consensus 49 ~~~VgVf~~~~----~~~I~~~~~~~~ld~vQLHG~e~~e~ 85 (197)
T PF00697_consen 49 PKIVGVFVNQS----PEEILEIVEELGLDVVQLHGDESPEY 85 (197)
T ss_dssp SSEEEEESSS-----HHHHHHHHHHCTESEEEE-SGG-HHH
T ss_pred CCEEEEEcCCC----HHHHHHHHHHcCCCEEEECCCCCHHH
Confidence 33899999954 67777888888999999999985443
No 375
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=25.58 E-value=3.2e+02 Score=24.22 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=44.7
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHH---HHHHHHHHHHHCCCCeeeccC---CCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRL---LVCAIVKELMKAGYPCLSLHG---GIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~---~~~~l~~~L~~~~~~~~~lhg---~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|-+.++.+ .++++|++....-. ..+.+.+.|...|+.+..+.+ .-+.+.-.+..+.++....+++|+
T Consensus 17 ~~~l~~~~~~~--~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 92 (382)
T cd08187 17 ESELGKELKKY--GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILA 92 (382)
T ss_pred HHHHHHHHHHh--CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 45566666666 46777677542111 246788888888887665543 233455667777788878887775
No 376
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.41 E-value=3.2e+02 Score=21.12 Aligned_cols=79 Identities=9% Similarity=0.046 Sum_probs=43.6
Q ss_pred CCCCeEEEEcCC-hhHHHHHHHHHHHHHCCCCeeecc--C-CCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcE
Q psy17587 18 DRDSTIVDFKNG-KVRLLVCAIVKELMKAGYPCLSLH--G-GIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNL 93 (231)
Q Consensus 18 ~~~~~iiiF~~~-~~~~~~~~l~~~L~~~~~~~~~lh--g-~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~ 93 (231)
...++++|||.. ..---.-.++..|...|+.+..+. . .-..++-...++.+++-...++.-.+.......+...++
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dl 102 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADL 102 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccE
Confidence 467899999954 222225577788989999877633 2 233344556666676555555443333222222335667
Q ss_pred EEE
Q psy17587 94 VVN 96 (231)
Q Consensus 94 VI~ 96 (231)
||.
T Consensus 103 IID 105 (169)
T PF03853_consen 103 IID 105 (169)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 377
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=25.34 E-value=3.3e+02 Score=23.78 Aligned_cols=69 Identities=7% Similarity=0.057 Sum_probs=34.3
Q ss_pred hhhhhccccccCCCCeEEEEcCC-hhHHHHHHHHHHHHHCCCC--eeeccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNG-KVRLLVCAIVKELMKAGYP--CLSLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~-~~~~~~~~l~~~L~~~~~~--~~~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
+..|-+.++.+. ++++|.+.. ......+.+.+.|...++. +..+.|.-+.+.-.+..+.+++.+.+++|
T Consensus 11 ~~~l~~~~~~~g--~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~II 82 (349)
T cd08550 11 IKEIAAILSTFG--SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVII 82 (349)
T ss_pred HHHHHHHHHHcC--CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 344555555553 455545543 1113355666667666653 33444444555555566666654444443
No 378
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.21 E-value=2.1e+02 Score=19.02 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=42.2
Q ss_pred EEEEcCC-h--hHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecC
Q psy17587 23 IVDFKNG-K--VRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDC 99 (231)
Q Consensus 23 iiiF~~~-~--~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~ 99 (231)
+++.|++ . .+-....+-+.+...++...+-+....+ ....+.+++++|--.......|.+++ +..++
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~---------~~~~~~DlIisT~~l~~~~~~~~~~~-i~v~~ 71 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGS---------AKASSADIIVTSKDLASLLADGGAKV-IGLKN 71 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEecccc---------cCCCCCCEEEEchhhhhhhccCCceE-EEEec
Confidence 5667755 2 1122334555565667665555554433 11346789998886665444555443 34444
Q ss_pred CCCHhHHHHHh
Q psy17587 100 PNHYEDYVHRC 110 (231)
Q Consensus 100 P~~~~~y~qr~ 110 (231)
-.+.+++.|.+
T Consensus 72 ~l~~~d~~~~~ 82 (86)
T cd05563 72 IMDKNEIKEKL 82 (86)
T ss_pred cCCHHHHHHHH
Confidence 44566666554
No 379
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=25.08 E-value=2.2e+02 Score=19.14 Aligned_cols=42 Identities=10% Similarity=-0.061 Sum_probs=30.8
Q ss_pred EEEEcCC---hhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHH
Q psy17587 23 IVDFKNG---KVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDST 64 (231)
Q Consensus 23 iiiF~~~---~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 64 (231)
+|+..+. .....+..+++.|+..|+.+....++.+...+.+-
T Consensus 3 ~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~ 47 (94)
T PF03129_consen 3 VIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKY 47 (94)
T ss_dssp EEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHH
Confidence 4445555 44567889999999999999888888877655433
No 380
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=24.96 E-value=1.3e+02 Score=30.03 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=36.6
Q ss_pred HHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc------c--cccCCCCCcEEEE
Q psy17587 42 LMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA------A--RGLDVKHLNLVVN 96 (231)
Q Consensus 42 L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~--~Gldip~v~~VI~ 96 (231)
+...|+++..-||++++.+|++ +.....+||++|+-- + --=.+.+|.+||.
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~r----~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIV 155 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQK----MLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIV 155 (814)
T ss_pred HHHcCCccceecCCCChHHhhh----ccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEe
Confidence 3456999999999999998873 445678999999731 1 1123557888875
No 381
>PRK06936 type III secretion system ATPase; Provisional
Probab=24.91 E-value=4.9e+02 Score=23.96 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=30.2
Q ss_pred cCChhHHHHHHHHHHHHHCCC---CeeeccCCCCHHHHHH-------HHHHHhCCCccEEEecC
Q psy17587 27 KNGKVRLLVCAIVKELMKAGY---PCLSLHGGIDQYDRDS-------TIVDFKNGKVRLLIATS 80 (231)
Q Consensus 27 ~~~~~~~~~~~l~~~L~~~~~---~~~~lhg~~~~~~R~~-------~~~~F~~g~~~vLvaT~ 80 (231)
|..+.++..+.+.+.|...+. -+++-.+++++-+|.. +-+-|++...+||+--|
T Consensus 196 iGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~D 259 (439)
T PRK06936 196 IGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMD 259 (439)
T ss_pred EccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecc
Confidence 444444555555555544332 2446667788888763 33447755557766544
No 382
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.82 E-value=2.7e+02 Score=20.08 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=29.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEE
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLL 76 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 76 (231)
.-+.++||++. +.+..+.+.+...|.+...++++ ....+..+..++..++++
T Consensus 55 ~iDlavv~~~~---~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 55 PIDLAVVCVPP---DKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVI 106 (116)
T ss_dssp T-SEEEE-S-H---HHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEE
T ss_pred CCCEEEEEcCH---HHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEE
Confidence 34666666665 34666777777779999999988 334445555566666655
No 383
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=24.81 E-value=1.7e+02 Score=20.94 Aligned_cols=35 Identities=14% Similarity=0.333 Sum_probs=14.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHG 54 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg 54 (231)
+..+|+++.+.....+-...+.++..|.+++.+.+
T Consensus 48 ~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 48 GDVVIAISNSGETDELLNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 34444444332222333334444444555444444
No 384
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=24.67 E-value=5.6e+02 Score=23.65 Aligned_cols=32 Identities=13% Similarity=-0.016 Sum_probs=18.1
Q ss_pred eeeccCCCCHHHHHHH-------HHHHhC-CCccEEEecC
Q psy17587 49 CLSLHGGIDQYDRDST-------IVDFKN-GKVRLLIATS 80 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~-------~~~F~~-g~~~vLvaT~ 80 (231)
+++-.++.|+-+|..+ -+-|+. ...+||+--|
T Consensus 200 vv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~D 239 (449)
T TIGR03305 200 MVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLID 239 (449)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEec
Confidence 3344666777777543 344775 4456665544
No 385
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=24.51 E-value=3.6e+02 Score=23.96 Aligned_cols=72 Identities=8% Similarity=-0.086 Sum_probs=44.8
Q ss_pred hhhhhccccccC--CCCeEEEEcCChhHH---HHHHHHHHHHHCCCCeeeccCCC---CHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYD--RDSTIVDFKNGKVRL---LVCAIVKELMKAGYPCLSLHGGI---DQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~--~~~~iiiF~~~~~~~---~~~~l~~~L~~~~~~~~~lhg~~---~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|-+.+..+. ..++++|.+...... ..+.+.+.|...|+.+..+.+.- +.+.-.+..+.+++...+++|+
T Consensus 11 ~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 90 (383)
T cd08186 11 IEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIA 90 (383)
T ss_pred HHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344445555541 236777777543211 14678888888888776665443 4555667777788877787775
No 386
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=24.40 E-value=3.1e+02 Score=23.64 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=41.9
Q ss_pred CCCeEEEE---cCChhHHHHHHHHHHHHHCCC---CeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 19 RDSTIVDF---KNGKVRLLVCAIVKELMKAGY---PCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 19 ~~~~iiiF---~~~~~~~~~~~l~~~L~~~~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
.++.+||. +.+- .+....++.|++.|- .+.+.||=++.. ..+.+.+..++=+++||..
T Consensus 210 ~Gr~vIIVDDIidTG--~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~----a~~~l~~~~i~~iv~Tdti 273 (301)
T PRK07199 210 AGRTPVLVDDIVSTG--RTLIEAARQLRAAGAASPDCVVVHALFAGD----AYSALAAAGIARVVSTDTV 273 (301)
T ss_pred CCCEEEEEecccCcH--HHHHHHHHHHHHCCCcEEEEEEEeeeCChH----HHHHHHhCCCCEEEEeCCc
Confidence 45677765 4443 457888899988875 677999988854 4555655568888899886
No 387
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=24.14 E-value=3.1e+02 Score=23.17 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|++-.++.|. |+.+||.++++... .|...|++.+.
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~ 78 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG 78 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC
Confidence 44667777777888888777765 89999999888765 46677776543
No 388
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=23.93 E-value=2.1e+02 Score=19.17 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=31.3
Q ss_pred eEEEEcCC-h-hHHHH-HHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 22 TIVDFKNG-K-VRLLV-CAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 22 ~iiiF~~~-~-~~~~~-~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
+|++.|.+ . +...+ ..+-+.+...|+.+...|+.....+ -..++.+++++|.-+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~-------~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVE-------EIADDADLILLTPQIA 58 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHH-------HHHTT-SEEEEEESSG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEecccccc-------cccCCCcEEEEcCccc
Confidence 46777754 2 11233 6667777888988888887622111 1134567777666544
No 389
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=23.87 E-value=2.3e+02 Score=21.84 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=34.7
Q ss_pred ccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHH
Q psy17587 12 GGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDR 61 (231)
Q Consensus 12 ~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 61 (231)
.+++........+|++++.-...+-.+.+.|...|. ...+||+.++.--
T Consensus 32 ~~~~~~~~~~~pLVCt~G~p~~A~~~LL~~L~~~g~-~l~y~GDfDp~Gl 80 (152)
T PF09664_consen 32 ALADELGASCPPLVCTSGQPSAAARRLLDRLAAAGA-RLYYSGDFDPEGL 80 (152)
T ss_pred HHHHhcCCCCCeEEEcCCcHHHHHHHHHHHHHhCCC-EEEEecCCCHHHH
Confidence 334444556777778888655667778888877775 5699999988754
No 390
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=23.82 E-value=2.7e+02 Score=22.30 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 34 LVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 34 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
..+.+.+.+...|+.+..+.++.++......++.+.+..++.+|
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii 60 (259)
T cd01542 17 TVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGII 60 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 34445555555566665555554455445555555555555443
No 391
>KOG1502|consensus
Probab=23.82 E-value=3.3e+02 Score=23.98 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=52.5
Q ss_pred EEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCcc-EEEecCccccc-cC--CCCCcEEEEecC
Q psy17587 24 VDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVR-LLIATSVAARG-LD--VKHLNLVVNYDC 99 (231)
Q Consensus 24 iiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~-vLvaT~~~~~G-ld--ip~v~~VI~~d~ 99 (231)
.||+.+-+--..-.+.+.|...|++|...-.+...++...-+.+|...+-+ -++--|+...| +| +..|+.|+|.-.
T Consensus 8 ~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~As 87 (327)
T KOG1502|consen 8 KVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTAS 87 (327)
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeCc
Confidence 346666444558889999999999988887777776666678888754422 23334443333 22 346899999776
Q ss_pred CCC
Q psy17587 100 PNH 102 (231)
Q Consensus 100 P~~ 102 (231)
|-+
T Consensus 88 p~~ 90 (327)
T KOG1502|consen 88 PVD 90 (327)
T ss_pred cCC
Confidence 654
No 392
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=23.65 E-value=2.8e+02 Score=19.79 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=31.6
Q ss_pred EEEEcCChhHHHHHHHHHHHHHC---CCCeeeccCCCCHHHHHHHHHH-Hh--CCCccEEEecCcc
Q psy17587 23 IVDFKNGKVRLLVCAIVKELMKA---GYPCLSLHGGIDQYDRDSTIVD-FK--NGKVRLLIATSVA 82 (231)
Q Consensus 23 iiiF~~~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~-F~--~g~~~vLvaT~~~ 82 (231)
+||-+.+..-+-....++.+... ++.+..+..+.+.++-...+.+ .. ...-.|||-||..
T Consensus 2 iii~sHG~~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ 67 (116)
T PF03610_consen 2 IIIASHGSLAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTDLG 67 (116)
T ss_dssp EEEEEETTHHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEESST
T ss_pred EEEEECcHHHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEeeCC
Confidence 55566664333334444444444 4566677777777665444444 32 2244566666664
No 393
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=23.48 E-value=1.1e+02 Score=22.15 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=24.5
Q ss_pred HHHHH-CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 40 KELMK-AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 40 ~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
++|.. .|+.+..+..+ +.+.+..+.+..++|+++.+|.|+.
T Consensus 38 ~~L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 38 LLIQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred HHHHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcCC
Confidence 34555 67776655211 1123466888888988777776654
No 394
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=23.45 E-value=8.3e+02 Score=25.21 Aligned_cols=34 Identities=9% Similarity=0.162 Sum_probs=22.5
Q ss_pred eeeccCCCCHHHHHHHH-------HHHhCCCccEEEecCcc
Q psy17587 49 CLSLHGGIDQYDRDSTI-------VDFKNGKVRLLIATSVA 82 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~~-------~~F~~g~~~vLvaT~~~ 82 (231)
+++-.++||...|.... +-|+....+||+..|-.
T Consensus 722 lv~~ts~~p~~~R~~s~y~a~tiAEyfrd~G~~Vll~~Ds~ 762 (1017)
T PRK14698 722 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADST 762 (1017)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 44667788888876443 45776667777766544
No 395
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=23.36 E-value=1.1e+02 Score=26.57 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=30.7
Q ss_pred hhccccccC--CCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 10 LHGGIDQYD--RDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 10 L~~~L~~~~--~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
+...+.... ++..|||||.+-.. .+..++-.|+..|+. +..+.||++
T Consensus 91 ~~~~l~~~Gi~~~~~VVvY~~~g~~-~a~r~~~~L~~~G~~~V~~LdGG~~ 140 (320)
T PLN02723 91 FAAAVSALGIENKDGVVVYDGKGIF-SAARVWWMFRVFGHEKVWVLDGGLP 140 (320)
T ss_pred HHHHHHHcCCCCCCEEEEEcCCCcc-hHHHHHHHHHHcCCCceEEcCCCHH
Confidence 334444443 56799999965311 244555678888885 889999974
No 396
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=23.05 E-value=3.6e+02 Score=20.84 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=42.2
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEE
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLV 94 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~V 94 (231)
+.+..+.+++|.|++. +.++.|-+.|-...=....=|+..... ......|+++++. .+.+ +.++.
T Consensus 24 Ka~~~G~rv~I~~~d~--~~~~~LD~~LWtf~~~SFlPH~~~~~~---------~~a~~PV~L~~~~--~~p~--~~~vL 88 (154)
T PRK06646 24 KCYYSDLKSVILTADA--DQQEMLNKNLWTYSRKQFIPHGSKLDP---------QPEKQPIYITDEL--QNPN--NASVL 88 (154)
T ss_pred HHHHcCCEEEEEcCCH--HHHHHHHHHhcCCCCCCCCCCCCCCCC---------CCCCCCEEEecCC--CCCC--CCCEE
Confidence 4455688999999877 678899888865543444445532111 0224578887433 1222 45678
Q ss_pred EEecC
Q psy17587 95 VNYDC 99 (231)
Q Consensus 95 I~~d~ 99 (231)
||.+.
T Consensus 89 iNL~~ 93 (154)
T PRK06646 89 VIISP 93 (154)
T ss_pred EECCC
Confidence 88765
No 397
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=22.95 E-value=2.5e+02 Score=22.84 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=36.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHH--------HHHHHHHhCCCc-cEEEecCccccc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDR--------DSTIVDFKNGKV-RLLIATSVAARG 85 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R--------~~~~~~F~~g~~-~vLvaT~~~~~G 85 (231)
++.+|..+.+. .-+..+.+. ....-...++||.+++-+. ...+++..++.+ .|++||+.-.+|
T Consensus 78 d~~~icVVe~p--~Dv~a~E~~-~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 78 DKSQLCVVEEP--KDVLALEKT-GEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred CCceEEEEcch--HHHHHHHHh-cccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 44445445543 223333332 2223345678887666553 455666778888 899999876555
No 398
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=22.85 E-value=3.3e+02 Score=24.26 Aligned_cols=72 Identities=8% Similarity=0.044 Sum_probs=46.1
Q ss_pred chhhhhccccccCCCCeEEEEcCChh--HHHHHHHHHHHHHCCCCeeeccCC---CCHHHHHHHHHHHhCCCccEEEe
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKV--RLLVCAIVKELMKAGYPCLSLHGG---IDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~--~~~~~~l~~~L~~~~~~~~~lhg~---~~~~~R~~~~~~F~~g~~~vLva 78 (231)
.+..|-+.++.+.. ++++|.+.... ....+.+.+.|...|+.+..+.+- -+.+.-.+..+.++..+.+++|+
T Consensus 18 ~~~~l~~~~~~~g~-~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iia 94 (383)
T PRK09860 18 SLTDAMNMMADYGF-TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVIS 94 (383)
T ss_pred HHHHHHHHHHhcCC-CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 34556666666643 56665554311 124677888888888877666553 34556677778888888888875
No 399
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=22.85 E-value=3e+02 Score=24.35 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=45.0
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHH--HHHHHHHHHHHCCCCeeeccC---CCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRL--LVCAIVKELMKAGYPCLSLHG---GIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~--~~~~l~~~L~~~~~~~~~lhg---~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|.+.+..+.. ++++|.+...... ..+.+.+.|...++.+..+.+ .-+.+.-.+..+.+++.+.+++|+
T Consensus 16 l~~l~~~l~~~g~-~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 91 (377)
T cd08176 16 IKEIGDELKNLGF-KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIIS 91 (377)
T ss_pred HHHHHHHHHHhCC-CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4455556665533 5666566542211 356778888888887766655 344555667777888888888875
No 400
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.85 E-value=3.2e+02 Score=23.46 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEec
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIAT 79 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT 79 (231)
+....+.++|...|..-+++-|. |+.+||.++++... +|++.|++.|
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~ 80 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV 80 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec
Confidence 45677788888888887777665 88899998888765 5777777654
No 401
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=22.79 E-value=6.1e+02 Score=23.42 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=6.3
Q ss_pred HhHHHHHhccc
Q psy17587 103 YEDYVHRCGRT 113 (231)
Q Consensus 103 ~~~y~qr~GR~ 113 (231)
...++.|+|+.
T Consensus 298 l~~l~ERag~~ 308 (451)
T PRK05688 298 LPKLVERAGNA 308 (451)
T ss_pred hHHHHHHhcCC
Confidence 44556666665
No 402
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=22.62 E-value=73 Score=27.57 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCC
Q psy17587 47 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKH 90 (231)
Q Consensus 47 ~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~ 90 (231)
+....+||+++ +.+|||.+|--..=||.|+
T Consensus 219 ~~~GiVHGDlS--------------efNIlV~~dg~~~vIDwPQ 248 (304)
T COG0478 219 YRRGIVHGDLS--------------EFNILVTEDGDIVVIDWPQ 248 (304)
T ss_pred HHcCccccCCc--------------hheEEEecCCCEEEEeCcc
Confidence 46789999998 5799999875545555554
No 403
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=22.58 E-value=4.2e+02 Score=23.41 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=44.7
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHH--HHHHHHHHHHHCCCCeeeccCC---CCHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRL--LVCAIVKELMKAGYPCLSLHGG---IDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~--~~~~l~~~L~~~~~~~~~lhg~---~~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|-+.++.+.. ++++|.+...... ..+.+.+.|...|+.+..+.+- -+.+.-.+..+.+++.+.+++|+
T Consensus 14 l~~l~~~l~~~g~-~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIa 89 (374)
T cd08189 14 LAQLPAAISQLGV-KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILA 89 (374)
T ss_pred HHHHHHHHHhcCC-CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 4455566665533 5677666542222 2567777888778877665443 33445667777888888888885
No 404
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=22.38 E-value=5e+02 Score=22.23 Aligned_cols=46 Identities=17% Similarity=0.050 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHCCC----CeeeccCCCCHHHHH-------HHHHHHhCCCccEEEe
Q psy17587 33 LLVCAIVKELMKAGY----PCLSLHGGIDQYDRD-------STIVDFKNGKVRLLIA 78 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~----~~~~lhg~~~~~~R~-------~~~~~F~~g~~~vLva 78 (231)
..+..+.+.+...+. -++.-.+++++..|. .+-+-|+....+|||-
T Consensus 110 ~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl 166 (274)
T cd01132 110 STVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALII 166 (274)
T ss_pred HHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 345666666655442 344556677777773 3445577544566544
No 405
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=22.29 E-value=3.9e+02 Score=21.62 Aligned_cols=48 Identities=25% Similarity=0.428 Sum_probs=36.7
Q ss_pred CCeEEEEc----CChhHHHHHHHHHHHHHCCCCeeeccCC-----------CCHHHHHHHHHHH
Q psy17587 20 DSTIVDFK----NGKVRLLVCAIVKELMKAGYPCLSLHGG-----------IDQYDRDSTIVDF 68 (231)
Q Consensus 20 ~~~iiiF~----~~~~~~~~~~l~~~L~~~~~~~~~lhg~-----------~~~~~R~~~~~~F 68 (231)
...+|-|+ .++++ .+..|.+.|...|+.+..+.|+ .+.++|.+++.+-
T Consensus 22 ~~~viW~TGLSGsGKST-iA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRv 84 (197)
T COG0529 22 KGAVIWFTGLSGSGKST-IANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRV 84 (197)
T ss_pred CCeEEEeecCCCCCHHH-HHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHH
Confidence 45677675 33533 5889999999999999999885 7788888887764
No 406
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.25 E-value=3.8e+02 Score=22.37 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEec
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIAT 79 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT 79 (231)
+....+.+++...|....++-|. |+.+||.++++... .|+..|++.+
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv 73 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGV 73 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEec
Confidence 34566667777778777776665 77888888887765 4566666654
No 407
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=22.19 E-value=4.3e+02 Score=22.33 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=72.4
Q ss_pred ccccccCC-CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHh---CCC-----ccEE-EecCc
Q psy17587 12 GGIDQYDR-DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFK---NGK-----VRLL-IATSV 81 (231)
Q Consensus 12 ~~L~~~~~-~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~---~g~-----~~vL-vaT~~ 81 (231)
.++..+.. +-++| -+....-.....|.+.|+..+.+.+.+.-+++-++.+..+..++ +|. -+|+ .||+-
T Consensus 71 all~~y~~~GLRlI-ev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 71 ALLNEYADQGLRLI-EVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred HHHHHHhhcCceEE-EECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 33444444 33444 55543334566777777777788777777888777766666665 333 2343 34431
Q ss_pred ----cccc-cCCCCCcEEEEecCCCCHhHHHH-HhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCc-hhHHH
Q psy17587 82 ----AARG-LDVKHLNLVVNYDCPNHYEDYVH-RCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIP-EDLDK 154 (231)
Q Consensus 82 ----~~~G-ldip~v~~VI~~d~P~~~~~y~q-r~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~l~~ 154 (231)
+.+. .|-++ +. +-.-++.+-++ .+.=+ .+-|..+.|..+.+...+.-+...+...+.+++ +.+..
T Consensus 150 RRHLv~E~~~d~~~----~~-~~eih~~d~~eEklSLs---DRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~ 221 (249)
T PF05673_consen 150 RRHLVPESFSDRED----IQ-DDEIHPSDTIEEKLSLS---DRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQ 221 (249)
T ss_pred hhhccchhhhhccC----CC-ccccCcchHHHHHHhHH---HhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 1111 11100 00 00001111111 11111 225789999999998888877777877777776 34544
Q ss_pred HH
Q psy17587 155 MW 156 (231)
Q Consensus 155 ~~ 156 (231)
.+
T Consensus 222 ~A 223 (249)
T PF05673_consen 222 EA 223 (249)
T ss_pred HH
Confidence 43
No 408
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=21.96 E-value=5.7e+02 Score=23.31 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=32.5
Q ss_pred hhhccccccCCCCeEEEEcC-ChhHHHHHHHHHHHHHCCC---CeeeccCCCCHHHHHH-------HHHHHhCCCccEEE
Q psy17587 9 SLHGGIDQYDRDSTIVDFKN-GKVRLLVCAIVKELMKAGY---PCLSLHGGIDQYDRDS-------TIVDFKNGKVRLLI 77 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~-~~~~~~~~~l~~~L~~~~~---~~~~lhg~~~~~~R~~-------~~~~F~~g~~~vLv 77 (231)
+|+..|-........+|++. .+.++..+.+.+.|...+. -+++-.++.++-.|.. +-+-|++...+||+
T Consensus 155 tLl~~I~~~~~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd~G~~Vll 234 (418)
T TIGR03498 155 TLLSMLARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLL 234 (418)
T ss_pred HHHHHHhCCCCCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 33444443333333343433 3333333344444433322 2345555666666653 33446654556665
Q ss_pred ecC
Q psy17587 78 ATS 80 (231)
Q Consensus 78 aT~ 80 (231)
--|
T Consensus 235 ~~D 237 (418)
T TIGR03498 235 LMD 237 (418)
T ss_pred ecc
Confidence 443
No 409
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=21.82 E-value=3.6e+02 Score=22.91 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEec
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIAT 79 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT 79 (231)
+....+.+++...|+.-.++-|. |+.+||.+.++... .|...|++.+
T Consensus 21 ~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv 76 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGA 76 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEec
Confidence 44667778888888888877775 89999998888654 4677777755
No 410
>KOG2501|consensus
Probab=21.73 E-value=2.9e+02 Score=21.56 Aligned_cols=67 Identities=7% Similarity=-0.041 Sum_probs=41.3
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
++..+++.++.... .--|||+++. ...+.+..++...+..-.++-=+ ...+++....|.-..+..|+
T Consensus 54 ~Lk~fYe~l~~~~~-~fEVvfVS~D--~~~~~~~~y~~~~~~~W~~iPf~--d~~~~~l~~ky~v~~iP~l~ 120 (157)
T KOG2501|consen 54 ILKDFYEELKDNAA-PFEVVFVSSD--RDEESLDEYMLEHHGDWLAIPFG--DDLIQKLSEKYEVKGIPALV 120 (157)
T ss_pred hHHHHHHHHHhcCC-ceEEEEEecC--CCHHHHHHHHHhcCCCeEEecCC--CHHHHHHHHhcccCcCceeE
Confidence 56778888887766 5556688876 55788888887654443333322 23455566667654444443
No 411
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.68 E-value=4.2e+02 Score=23.42 Aligned_cols=71 Identities=6% Similarity=-0.064 Sum_probs=45.8
Q ss_pred chhhhhccccccCCCCeEEEEcCChh---HHHHHHHHHHHHHCCCCeeeccCC---CCHHHHHHHHHHHhCCCccEEEe
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKV---RLLVCAIVKELMKAGYPCLSLHGG---IDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~---~~~~~~l~~~L~~~~~~~~~lhg~---~~~~~R~~~~~~F~~g~~~vLva 78 (231)
.+..|-+.++.+. ++++|.+.... ....+.+.+.|...++.+..+.+- -+.+.-.+..+.+++.+.+++|+
T Consensus 13 ~l~~l~~~~~~~g--~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia 89 (380)
T cd08185 13 KLNELGEEALKPG--KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVG 89 (380)
T ss_pred HHHHHHHHHHhcC--CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3455556666543 67777775431 224577888888888887666543 34455566677788888888885
No 412
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=21.45 E-value=4.9e+02 Score=21.82 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=39.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
.+-+|.|++.. ....+.....+.|..+++-.-+++.++.....+.-+...+.++++.+
T Consensus 69 ~DvVIdfT~p~---~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 69 PDVLIDFTTPE---GVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred CCEEEECCChH---HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 46677777653 34555556567788888766678888877777766666677777543
No 413
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.41 E-value=2.9e+02 Score=19.20 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=30.9
Q ss_pred eEEEEcCC--hhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 22 TIVDFKNG--KVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 22 ~iiiF~~~--~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+|++.|.+ -+.-.++.+-+.+...|+++...|.+.+.-+ . ...+.+++++++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~------~-~~~~~Diil~~P 54 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELE------E-YIDDADVVLLGP 54 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHH------H-hcCCCCEEEECh
Confidence 36677755 1123466677777788998888887754332 1 123456666554
No 414
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=21.37 E-value=5.7e+02 Score=23.66 Aligned_cols=58 Identities=7% Similarity=-0.087 Sum_probs=29.0
Q ss_pred EEEEc--CChhHHHHHHHHHHHHHCC--CC-eeeccCCCCHHHHHH-------HHHHHh-CCCccEEEecC
Q psy17587 23 IVDFK--NGKVRLLVCAIVKELMKAG--YP-CLSLHGGIDQYDRDS-------TIVDFK-NGKVRLLIATS 80 (231)
Q Consensus 23 iiiF~--~~~~~~~~~~l~~~L~~~~--~~-~~~lhg~~~~~~R~~-------~~~~F~-~g~~~vLvaT~ 80 (231)
++||+ -.+.++..+.+...+.... .. +++-.+++|+-+|.. +-+-|+ +...+||+--|
T Consensus 175 v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli~D 245 (458)
T TIGR01041 175 AVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMHVLVILT 245 (458)
T ss_pred EEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHccCCcEEEEEc
Confidence 55564 3344444444444433222 22 345567788888764 344588 44446655433
No 415
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=21.35 E-value=2.7e+02 Score=18.69 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=33.2
Q ss_pred eEEEEcCChh---HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCC
Q psy17587 22 TIVDFKNGKV---RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVK 89 (231)
Q Consensus 22 ~iiiF~~~~~---~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip 89 (231)
++++.|++-. .-....+-+.+...++.+..-+..... +.. ...+.+++++|.-.....+.|
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~------~~~-~~~~~Dliist~~~~~~~~~p 65 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAE------VPS-LLDDADLIVSTTKVPEDYGIP 65 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHH------hhc-ccCCCcEEEEcCCcCCCCCCC
Confidence 5777886521 123445555565666665554443221 111 234678888888776544444
No 416
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=21.30 E-value=4.9e+02 Score=21.73 Aligned_cols=56 Identities=11% Similarity=0.177 Sum_probs=37.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC-CCCee-eccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA-GYPCL-SLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~-~~~~~-~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
+.++- |..++ ...++.+++.|+.. ++.+. +.||=.++++...++++......++|+
T Consensus 105 ~~~v~-llG~~-~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~ 162 (243)
T PRK03692 105 GTPVF-LVGGK-PEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVT 162 (243)
T ss_pred CCeEE-EECCC-HHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 34555 44432 26688888888653 66654 567777777777888888877766654
No 417
>PLN02417 dihydrodipicolinate synthase
Probab=21.27 E-value=4.1e+02 Score=22.42 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|..-+++.|. |+.+||.++++... .|.+.|++.+.
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~ 78 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG 78 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 44667777787888888877775 89999999887754 57788887664
No 418
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=21.24 E-value=1.1e+02 Score=23.63 Aligned_cols=40 Identities=18% Similarity=0.459 Sum_probs=29.8
Q ss_pred HHHhCCCccEEEecCccccccCCCCCcEEEEecCCC---CHhHHHHHh
Q psy17587 66 VDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPN---HYEDYVHRC 110 (231)
Q Consensus 66 ~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~---~~~~y~qr~ 110 (231)
+.|.+..++|++.++....|+ ++||.-|+|. ...+|++|-
T Consensus 15 ~~w~DrSvNvf~~~~~gt~~~-----sfvIsRd~~~~g~~~~~y~~rq 57 (147)
T COG5435 15 AAWQDRSVNVFVSGDNGTSGF-----SFVISRDPLEPGDTFPEYVQRQ 57 (147)
T ss_pred chhccceEEEEEecCCCccee-----EEEEecCCCCCCCcHHHHHHHH
Confidence 357777889999888765554 5699988775 578888865
No 419
>PRK05723 flavodoxin; Provisional
Probab=21.20 E-value=3.8e+02 Score=20.42 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHh
Q psy17587 31 VRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRC 110 (231)
Q Consensus 31 ~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~ 110 (231)
....++.|++.|...++.+.. +..++.. .+..+. .-.++++|+..+.| ++|.+...+...+
T Consensus 14 ae~~A~~la~~l~~~g~~~~~-~~~~~~~----~~~~~~--~~~li~~~sT~G~G------------e~Pd~~~~f~~~L 74 (151)
T PRK05723 14 AEEVARHAESLLKAAGFEAWH-NPRASLQ----DLQAFA--PEALLAVTSTTGMG------------ELPDNLMPLYSAI 74 (151)
T ss_pred HHHHHHHHHHHHHHCCCceee-cCcCCHh----HHHhCC--CCeEEEEECCCCCC------------CCchhHHHHHHHH
Confidence 335677777777777877654 3333322 122332 22578888888888 6788888887666
Q ss_pred cccCCCCCceeEEEEecccch
Q psy17587 111 GRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 111 GR~gR~g~~g~~i~~~~~~~~ 131 (231)
-...-..-.|..+.++.-++.
T Consensus 75 ~~~~~~~l~~~~~aVfGLGDs 95 (151)
T PRK05723 75 RDQLPAAWRGLPGAVIALGDS 95 (151)
T ss_pred HhcCccCCCCCEEEEEeEeCC
Confidence 332111234555656555544
No 420
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.91 E-value=5.1e+02 Score=21.80 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=50.8
Q ss_pred CCCCchhhhhccccccC---CCCeEEEEc--CChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCC-ccE
Q psy17587 2 KAGYPCLSLHGGIDQYD---RDSTIVDFK--NGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGK-VRL 75 (231)
Q Consensus 2 ~~~~k~~~L~~~L~~~~---~~~~iiiF~--~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~v 75 (231)
+.|-++..+++.+++.. .+-.++++. |....--.+...+.+...|+.-..+ -+|+.++.....+..++-. ..|
T Consensus 68 ~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 68 AAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLII-PDLPPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHHHcCCcEE
Confidence 35666767777776644 344566565 5432234677788888888886666 5899998888888877533 334
Q ss_pred EEecCc
Q psy17587 76 LIATSV 81 (231)
Q Consensus 76 LvaT~~ 81 (231)
.++|+.
T Consensus 147 ~lvap~ 152 (258)
T PRK13111 147 FLVAPT 152 (258)
T ss_pred EEeCCC
Confidence 434443
No 421
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=20.80 E-value=3e+02 Score=19.16 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=25.5
Q ss_pred CCeEEEEcCCh--hHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 20 DSTIVDFKNGK--VRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 20 ~~~iiiF~~~~--~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
..+|+++|.+- +...+..+-+.+.+.|+++-..+.+.+
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~ 42 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYG 42 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHH
Confidence 36788899662 123456666667778998888887654
No 422
>COG3141 DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS , pqiA [General function prediction only]
Probab=20.67 E-value=2.6e+02 Score=19.61 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhhHHHHHhHHHHHHHHHHhh
Q psy17587 188 GEIIRALEASGVPIPEDLDKILAEGLVWLRDYKQRVDQRIARE 230 (231)
Q Consensus 188 ~~~~~~l~~~~~~~~~~l~~~~~~~~s~~r~y~~~~~~~i~~~ 230 (231)
-++...|..+....|..++.-.+++++..-+..+-..+.|++.
T Consensus 32 Ld~Ad~L~e~L~ks~~~leeeq~E~Ls~flAenke~l~~~lk~ 74 (97)
T COG3141 32 LDTADLLDEWLTKSPVSLEEEQREALSLFLAENKDVLSTILKT 74 (97)
T ss_pred HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 3556677777777778888888899998888888888888763
No 423
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.65 E-value=5.5e+02 Score=22.07 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+.+...|+.-+++-|. |+.+||.++++... .|++.|++.+.
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~ 85 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT 85 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 45677888888889888877775 99999999988754 57788887654
No 424
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=20.62 E-value=5.1e+02 Score=22.05 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=40.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC-CCCeeeccCCCCHHHHHHH-HHHHhC--CCccEEEec
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA-GYPCLSLHGGIDQYDRDST-IVDFKN--GKVRLLIAT 79 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~-~~~F~~--g~~~vLvaT 79 (231)
+..+|+...+. +-.+.|++.|... +..+.++--+++..+-... .+..+. +.++|||-.
T Consensus 30 g~~liLvaR~~--~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 30 GYNLILVARRE--DKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred CCEEEEEeCcH--HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEEC
Confidence 45566567766 5589999999754 5788899999886654444 444454 478888854
No 425
>KOG1132|consensus
Probab=20.59 E-value=7.6e+02 Score=25.02 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=47.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHC-------CCCeeeccCCCCHHHHHHHHHHHhC--------CCccEEEecCccccc
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKA-------GYPCLSLHGGIDQYDRDSTIVDFKN--------GKVRLLIATSVAARG 85 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~~~~F~~--------g~~~vLvaT~~~~~G 85 (231)
..+++|.++. ...+.+....+.. +.+-..+- =-+..+-.+++.+|.+ |..-..||=--+++|
T Consensus 562 ~G~L~FfPSY--~vmdk~~tfw~~~~~we~~~~vk~l~vE-Pr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 562 YGLLIFFPSY--PVMDKLITFWQNRGLWERMEKVKKLVVE-PRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cceEEeccch--HHHHHHHHHHHcchHHHHhhcccCceec-cCCccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 4477898887 5577765554321 22222221 1234444556666654 233466888899999
Q ss_pred cCCCC--CcEEEEecCCC
Q psy17587 86 LDVKH--LNLVVNYDCPN 101 (231)
Q Consensus 86 ldip~--v~~VI~~d~P~ 101 (231)
+|+.+ -+.||...+|.
T Consensus 639 lDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLPY 656 (945)
T ss_pred CCccccCCceeEEecCCC
Confidence 99984 44788877774
No 426
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=20.53 E-value=65 Score=17.77 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=7.6
Q ss_pred CCCccEEEecCc
Q psy17587 70 NGKVRLLIATSV 81 (231)
Q Consensus 70 ~g~~~vLvaT~~ 81 (231)
.|...|+|+|+=
T Consensus 2 ~g~LqI~ISTnG 13 (30)
T PF14824_consen 2 RGPLQIAISTNG 13 (30)
T ss_dssp -TTEEEEEEESS
T ss_pred CCCeEEEEECCC
Confidence 466777777763
No 427
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=20.51 E-value=2.4e+02 Score=17.87 Aligned_cols=45 Identities=13% Similarity=-0.021 Sum_probs=30.9
Q ss_pred EEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHH
Q psy17587 23 IVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDF 68 (231)
Q Consensus 23 iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 68 (231)
|.+|+... .-.|......|...++....+.-...++.+....+..
T Consensus 2 i~ly~~~~-Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPN-CPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRS 46 (75)
T ss_pred EEEEeCCC-ChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 55676431 2568888888999999888887777666665544443
No 428
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=20.51 E-value=4.8e+02 Score=22.10 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=40.6
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeecc-CCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLH-GGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lh-g~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
+.-.....=|+|..++ ...+++....|++. +.++...| |=.++.+.+.++++....+.+||+
T Consensus 102 ~~a~~~~~~vfllGgk-p~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~ 166 (253)
T COG1922 102 KRAAEEGKRVFLLGGK-PGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILL 166 (253)
T ss_pred HHhCccCceEEEecCC-HHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEE
Confidence 3333343444455443 26688888888765 35666555 778888888888988887777664
No 429
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=20.16 E-value=4.1e+02 Score=20.35 Aligned_cols=47 Identities=11% Similarity=-0.109 Sum_probs=33.4
Q ss_pred eEEEEcCC-----hhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHH
Q psy17587 22 TIVDFKNG-----KVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDF 68 (231)
Q Consensus 22 ~iiiF~~~-----~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 68 (231)
+|+||+.+ ++-..+..+-+.|...+++...+.=.|.++.+++..+..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 36677765 112568888899999998888887778777777655443
No 430
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.01 E-value=5e+02 Score=22.59 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=42.4
Q ss_pred hhhhhccccccCCCCeEEEEcCChh-HHHHHHHHHHHHHCCCCe--eeccCCCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKV-RLLVCAIVKELMKAGYPC--LSLHGGIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~-~~~~~~l~~~L~~~~~~~--~~lhg~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|-+.++++ +++++|.+.... ....+.+.+.|...++.+ ..+.+.-+.+.-.+..+.+++.+.+++|+
T Consensus 11 ~~~l~~~~~~~--~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 83 (351)
T cd08170 11 LDELGEYLARL--GKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIG 83 (351)
T ss_pred HHHHHHHHHHh--CCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEE
Confidence 44555666666 366766664321 134556666777767664 34566666777777777787766555554
Done!