Query psy17587
Match_columns 231
No_of_seqs 217 out of 2068
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 17:27:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jgn_A DBX, DDX3, ATP-dependen 100.0 2.7E-32 9.3E-37 218.4 14.9 152 4-157 30-181 (185)
2 2p6n_A ATP-dependent RNA helic 100.0 2.2E-31 7.5E-36 214.2 14.7 148 4-155 40-188 (191)
3 2hjv_A ATP-dependent RNA helic 100.0 1.6E-30 5.3E-35 203.8 15.7 139 3-144 19-157 (163)
4 1t5i_A C_terminal domain of A 100.0 6.8E-31 2.3E-35 207.8 13.0 146 3-151 15-161 (172)
5 1fuk_A Eukaryotic initiation f 100.0 2.9E-31 1E-35 208.2 9.9 144 5-151 16-159 (165)
6 2rb4_A ATP-dependent RNA helic 100.0 2.9E-30 1E-34 204.4 14.8 138 5-145 20-163 (175)
7 3eaq_A Heat resistant RNA depe 100.0 9E-30 3.1E-34 207.9 15.5 140 3-145 15-154 (212)
8 2db3_A ATP-dependent RNA helic 100.0 4.3E-29 1.5E-33 223.8 16.3 146 5-154 287-433 (434)
9 3i32_A Heat resistant RNA depe 100.0 5.8E-29 2E-33 213.1 13.9 140 3-145 12-151 (300)
10 2i4i_A ATP-dependent RNA helic 100.0 3.4E-28 1.2E-32 215.1 16.3 152 4-157 260-411 (417)
11 2yjt_D ATP-dependent RNA helic 99.9 5.2E-30 1.8E-34 202.1 0.0 137 4-143 15-151 (170)
12 3i5x_A ATP-dependent RNA helic 99.9 1.3E-26 4.3E-31 213.4 18.6 129 11-141 330-461 (563)
13 3sqw_A ATP-dependent RNA helic 99.9 4.2E-26 1.4E-30 211.1 19.2 129 11-141 279-410 (579)
14 2j0s_A ATP-dependent RNA helic 99.9 1.3E-26 4.3E-31 204.9 13.5 144 4-150 261-404 (410)
15 1s2m_A Putative ATP-dependent 99.9 2.9E-26 1E-30 201.8 13.9 144 5-151 244-387 (400)
16 3eiq_A Eukaryotic initiation f 99.9 1.6E-26 5.3E-31 204.0 10.8 148 4-154 265-412 (414)
17 1xti_A Probable ATP-dependent 99.9 1.7E-25 5.8E-30 196.0 14.7 144 5-151 236-380 (391)
18 2v1x_A ATP-dependent DNA helic 99.9 1.5E-25 5E-30 208.1 15.1 130 6-137 253-382 (591)
19 1oyw_A RECQ helicase, ATP-depe 99.9 2.4E-25 8.3E-30 204.0 15.8 132 5-139 222-353 (523)
20 1hv8_A Putative ATP-dependent 99.9 3.6E-25 1.2E-29 191.7 15.6 138 5-146 225-362 (367)
21 3fht_A ATP-dependent RNA helic 99.9 8.9E-25 3E-29 192.5 14.1 141 6-149 253-400 (412)
22 3pey_A ATP-dependent RNA helic 99.9 3.5E-24 1.2E-28 187.3 16.0 131 8-141 232-369 (395)
23 1fuu_A Yeast initiation factor 99.9 7.7E-26 2.6E-30 198.2 0.0 146 5-153 245-390 (394)
24 4a2p_A RIG-I, retinoic acid in 99.9 4.8E-24 1.6E-28 194.8 9.2 125 4-132 371-511 (556)
25 3fmp_B ATP-dependent RNA helic 99.9 2.7E-25 9.2E-30 200.9 0.0 141 4-147 318-465 (479)
26 2z0m_A 337AA long hypothetical 99.9 1.5E-23 5.2E-28 179.6 10.9 117 18-141 218-334 (337)
27 1wp9_A ATP-dependent RNA helic 99.9 2.6E-23 8.7E-28 185.2 10.6 125 4-131 342-477 (494)
28 3tbk_A RIG-I helicase domain; 99.9 9.4E-24 3.2E-28 192.4 7.8 126 5-134 371-512 (555)
29 1z5z_A Helicase of the SNF2/RA 99.9 9.5E-23 3.2E-27 172.2 10.3 125 3-129 94-224 (271)
30 3oiy_A Reverse gyrase helicase 99.9 2.6E-22 8.8E-27 178.0 13.4 125 6-142 240-376 (414)
31 2ykg_A Probable ATP-dependent 99.9 3.9E-23 1.3E-27 194.4 8.3 127 4-134 379-521 (696)
32 4gl2_A Interferon-induced heli 99.9 1.1E-22 3.9E-27 191.3 10.2 119 5-128 381-517 (699)
33 2d7d_A Uvrabc system protein B 99.9 7.1E-22 2.4E-26 185.5 14.8 126 7-135 431-562 (661)
34 4a2q_A RIG-I, retinoic acid in 99.9 1.8E-22 6.2E-27 193.2 9.9 124 5-132 613-752 (797)
35 1c4o_A DNA nucleotide excision 99.9 1.2E-21 4.1E-26 184.1 14.9 128 7-137 425-558 (664)
36 1tf5_A Preprotein translocase 99.9 1.9E-22 6.5E-27 190.6 8.8 123 5-131 416-547 (844)
37 3fho_A ATP-dependent RNA helic 99.9 3.2E-23 1.1E-27 189.2 3.4 141 6-149 344-491 (508)
38 1yks_A Genome polyprotein [con 99.9 4.4E-22 1.5E-26 178.8 10.7 124 20-150 177-323 (440)
39 4a2w_A RIG-I, retinoic acid in 99.9 4.8E-22 1.6E-26 193.1 10.1 123 5-131 613-751 (936)
40 2whx_A Serine protease/ntpase/ 99.9 1.5E-21 5E-26 182.0 11.9 133 9-150 346-502 (618)
41 3dmq_A RNA polymerase-associat 99.9 1.4E-21 4.8E-26 190.3 12.3 135 5-142 489-626 (968)
42 3jux_A Protein translocase sub 99.8 3.3E-21 1.1E-25 179.4 10.8 123 5-131 458-589 (822)
43 2wv9_A Flavivirin protease NS2 99.8 6.1E-21 2.1E-25 179.3 10.7 116 19-141 409-548 (673)
44 2fsf_A Preprotein translocase 99.8 9.4E-21 3.2E-25 178.8 11.1 123 5-131 425-585 (853)
45 2z83_A Helicase/nucleoside tri 99.8 3E-21 1E-25 174.2 6.4 110 11-129 183-313 (459)
46 2jlq_A Serine protease subunit 99.8 2.3E-20 7.8E-25 168.1 10.9 103 20-129 188-311 (451)
47 1nkt_A Preprotein translocase 99.8 8.9E-20 3E-24 172.7 12.8 123 5-131 444-619 (922)
48 1gku_B Reverse gyrase, TOP-RG; 99.8 7.9E-20 2.7E-24 179.4 12.7 129 5-143 262-468 (1054)
49 2va8_A SSO2462, SKI2-type heli 99.8 1.4E-19 5E-24 171.0 13.7 112 18-131 250-410 (715)
50 2xau_A PRE-mRNA-splicing facto 99.8 1.4E-20 4.7E-25 179.4 6.0 110 19-131 302-445 (773)
51 2xgj_A ATP-dependent RNA helic 99.8 1.3E-19 4.4E-24 176.9 12.7 119 8-129 332-499 (1010)
52 2zj8_A DNA helicase, putative 99.8 1.6E-19 5.4E-24 171.0 12.5 110 19-130 236-388 (720)
53 2fwr_A DNA repair protein RAD2 99.8 3.4E-20 1.2E-24 167.1 7.4 116 6-129 336-454 (472)
54 2v6i_A RNA helicase; membrane, 99.8 1.8E-19 6E-24 161.4 11.9 111 8-127 161-289 (431)
55 2p6r_A Afuhel308 helicase; pro 99.8 1.9E-19 6.6E-24 170.0 12.6 110 19-130 241-389 (702)
56 1z63_A Helicase of the SNF2/RA 99.8 1.4E-19 4.7E-24 164.2 11.1 123 5-129 325-453 (500)
57 2eyq_A TRCF, transcription-rep 99.8 1.8E-19 6E-24 178.1 12.3 114 15-130 807-923 (1151)
58 3rc3_A ATP-dependent RNA helic 99.8 4.6E-19 1.6E-23 166.4 14.2 101 24-127 324-443 (677)
59 4ddu_A Reverse gyrase; topoiso 99.8 1.9E-19 6.6E-24 177.0 11.9 125 6-142 297-503 (1104)
60 3o8b_A HCV NS3 protease/helica 99.8 3.2E-19 1.1E-23 166.4 12.7 102 19-132 395-517 (666)
61 3l9o_A ATP-dependent RNA helic 99.8 1.3E-19 4.4E-24 178.3 9.0 119 9-130 431-598 (1108)
62 1gm5_A RECG; helicase, replica 99.8 7.6E-20 2.6E-24 174.1 5.3 122 9-130 566-698 (780)
63 2oca_A DAR protein, ATP-depend 99.8 2.7E-19 9.4E-24 162.6 8.7 106 19-127 347-453 (510)
64 1z3i_X Similar to RAD54-like; 99.8 1.5E-18 5.2E-23 162.5 13.7 122 6-129 400-528 (644)
65 4a4z_A Antiviral helicase SKI2 99.8 3.3E-18 1.1E-22 166.9 12.6 117 7-127 324-490 (997)
66 3mwy_W Chromo domain-containin 99.8 4.1E-18 1.4E-22 163.2 12.2 123 5-129 556-684 (800)
67 3h1t_A Type I site-specific re 99.7 5.4E-18 1.8E-22 157.0 11.0 106 10-118 429-545 (590)
68 4f92_B U5 small nuclear ribonu 99.7 2.3E-17 7.8E-22 167.9 11.4 125 9-135 1144-1314(1724)
69 4f92_B U5 small nuclear ribonu 99.7 8.5E-17 2.9E-21 163.7 10.8 121 11-133 308-477 (1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 2.8E-12 9.5E-17 125.3 12.3 106 20-128 537-708 (1038)
71 2vl7_A XPD; helicase, unknown 98.3 1.1E-06 3.8E-11 80.5 7.3 74 20-101 384-463 (540)
72 3hgt_A HDA1 complex subunit 3; 98.0 2.8E-05 9.6E-10 66.5 9.3 119 6-131 110-239 (328)
73 2ipc_A Preprotein translocase 98.0 2.1E-05 7.3E-10 75.2 9.0 120 6-130 428-699 (997)
74 4a15_A XPD helicase, ATP-depen 97.3 0.00079 2.7E-08 62.6 9.0 100 20-125 448-581 (620)
75 1gm5_A RECG; helicase, replica 96.5 0.0045 1.5E-07 59.0 7.3 80 15-96 412-496 (780)
76 3oiy_A Reverse gyrase helicase 96.3 0.0083 2.9E-07 52.2 7.0 81 15-97 59-146 (414)
77 3crv_A XPD/RAD3 related DNA he 96.0 0.078 2.7E-06 48.2 12.2 74 20-101 393-473 (551)
78 1t6n_A Probable ATP-dependent 95.5 0.09 3.1E-06 41.3 9.5 73 19-96 81-164 (220)
79 2eyq_A TRCF, transcription-rep 95.1 0.058 2E-06 53.5 8.5 78 17-96 649-731 (1151)
80 4ddu_A Reverse gyrase; topoiso 94.9 0.034 1.2E-06 55.0 6.2 78 18-97 119-203 (1104)
81 3ber_A Probable ATP-dependent 94.4 0.21 7E-06 40.4 8.8 76 15-96 106-192 (249)
82 2oxc_A Probable ATP-dependent 94.3 0.15 5.2E-06 40.4 7.8 78 12-96 84-172 (230)
83 1vec_A ATP-dependent RNA helic 94.1 0.25 8.7E-06 38.1 8.6 74 17-96 68-152 (206)
84 1xti_A Probable ATP-dependent 93.8 0.31 1.1E-05 41.4 9.3 79 13-96 69-158 (391)
85 1oyw_A RECQ helicase, ATP-depe 93.6 0.2 6.7E-06 45.3 7.9 59 20-80 65-123 (523)
86 2v1x_A ATP-dependent DNA helic 93.5 0.2 6.9E-06 46.1 7.9 60 20-81 84-145 (591)
87 3bor_A Human initiation factor 93.4 0.26 8.7E-06 39.3 7.5 74 18-96 96-179 (237)
88 3fe2_A Probable ATP-dependent 93.0 0.52 1.8E-05 37.5 8.9 72 19-96 101-182 (242)
89 1qde_A EIF4A, translation init 92.6 0.23 7.9E-06 38.9 6.1 78 12-96 74-161 (224)
90 2gxq_A Heat resistant RNA depe 92.3 0.65 2.2E-05 35.7 8.4 72 19-96 71-150 (207)
91 3iwh_A Rhodanese-like domain p 92.1 0.17 5.7E-06 35.4 4.2 47 8-56 44-90 (103)
92 3foj_A Uncharacterized protein 91.5 0.23 7.9E-06 34.1 4.3 47 9-57 45-91 (100)
93 2l82_A Designed protein OR32; 91.3 1.8 6.2E-05 30.6 8.7 53 22-76 4-56 (162)
94 3gk5_A Uncharacterized rhodane 91.2 0.23 7.7E-06 34.8 4.1 47 9-57 44-90 (108)
95 3eme_A Rhodanese-like domain p 91.1 0.25 8.5E-06 34.1 4.2 47 9-57 45-91 (103)
96 3iuy_A Probable ATP-dependent 91.0 0.6 2.1E-05 36.7 6.9 72 19-96 93-173 (228)
97 1s2m_A Putative ATP-dependent 90.0 1.3 4.4E-05 37.6 8.7 72 19-96 88-169 (400)
98 1wv9_A Rhodanese homolog TT165 90.0 0.42 1.4E-05 32.4 4.5 45 10-57 44-88 (94)
99 2j0s_A ATP-dependent RNA helic 89.0 2.1 7.3E-05 36.4 9.3 79 12-96 97-185 (410)
100 1q0u_A Bstdead; DEAD protein, 88.9 0.35 1.2E-05 37.9 3.9 77 14-96 66-156 (219)
101 1fuu_A Yeast initiation factor 88.6 1.3 4.4E-05 37.4 7.6 79 11-96 80-168 (394)
102 3g5j_A Putative ATP/GTP bindin 88.0 0.31 1.1E-05 34.9 2.8 48 9-58 77-126 (134)
103 1wrb_A DJVLGB; RNA helicase, D 87.9 2.1 7.1E-05 34.1 8.0 71 20-96 100-180 (253)
104 3ly5_A ATP-dependent RNA helic 87.8 3 0.0001 33.6 8.9 72 19-96 125-207 (262)
105 2pl3_A Probable ATP-dependent 87.7 1.1 3.7E-05 35.3 6.1 71 19-96 96-177 (236)
106 1wp9_A ATP-dependent RNA helic 87.2 1.2 4.1E-05 38.3 6.6 71 19-96 51-131 (494)
107 3fmo_B ATP-dependent RNA helic 86.9 0.76 2.6E-05 38.2 4.9 75 13-96 155-241 (300)
108 2i4i_A ATP-dependent RNA helic 86.6 3.3 0.00011 35.2 9.0 70 21-96 102-181 (417)
109 4a2p_A RIG-I, retinoic acid in 86.0 0.96 3.3E-05 40.2 5.4 71 20-96 55-136 (556)
110 3tbk_A RIG-I helicase domain; 85.9 0.66 2.3E-05 41.2 4.3 71 20-96 52-133 (555)
111 3flh_A Uncharacterized protein 85.8 0.41 1.4E-05 34.3 2.4 49 9-57 60-108 (124)
112 3eiq_A Eukaryotic initiation f 85.0 3 0.0001 35.4 8.0 81 11-96 99-189 (414)
113 1gmx_A GLPE protein; transfera 84.9 0.63 2.1E-05 32.3 3.0 46 10-57 48-94 (108)
114 3dkp_A Probable ATP-dependent 84.9 0.6 2E-05 37.1 3.2 73 19-96 97-181 (245)
115 4a2q_A RIG-I, retinoic acid in 84.6 1.4 4.8E-05 41.7 6.1 71 20-96 296-377 (797)
116 3hix_A ALR3790 protein; rhodan 83.7 1.2 4E-05 30.8 3.9 40 16-57 48-88 (106)
117 1gku_B Reverse gyrase, TOP-RG; 83.1 1.5 5E-05 43.2 5.6 74 19-96 98-181 (1054)
118 2db3_A ATP-dependent RNA helic 81.9 2.7 9.1E-05 36.6 6.4 71 20-96 129-209 (434)
119 1tq1_A AT5G66040, senescence-a 80.9 1.2 4E-05 32.0 3.1 40 16-57 78-118 (129)
120 2jtq_A Phage shock protein E; 80.7 1.7 5.8E-05 28.5 3.7 37 18-57 39-76 (85)
121 2fsf_A Preprotein translocase 80.5 2.3 7.9E-05 40.7 5.7 55 19-81 114-172 (853)
122 3nhv_A BH2092 protein; alpha-b 79.7 1.4 4.9E-05 32.3 3.3 42 14-57 66-109 (144)
123 1tf5_A Preprotein translocase 79.1 3.2 0.00011 39.7 6.2 69 20-96 124-209 (844)
124 2hhg_A Hypothetical protein RP 77.6 2 6.8E-05 31.0 3.5 39 17-57 83-122 (139)
125 3ilm_A ALR3790 protein; rhodan 77.5 3 0.0001 30.4 4.5 40 16-57 52-92 (141)
126 2k0z_A Uncharacterized protein 77.0 3.2 0.00011 28.7 4.3 39 17-57 53-91 (110)
127 1qxn_A SUD, sulfide dehydrogen 76.6 1.7 5.9E-05 31.6 2.9 41 15-57 77-118 (137)
128 1hv8_A Putative ATP-dependent 75.9 9.6 0.00033 31.4 7.8 71 19-96 73-153 (367)
129 2z0m_A 337AA long hypothetical 75.9 5.3 0.00018 32.6 6.1 70 20-96 56-135 (337)
130 4a2w_A RIG-I, retinoic acid in 75.8 2.3 7.9E-05 41.1 4.4 71 20-96 296-377 (936)
131 2fsx_A RV0390, COG0607: rhodan 75.2 3.1 0.0001 30.5 4.0 38 18-57 78-116 (148)
132 3d1p_A Putative thiosulfate su 74.9 2.8 9.7E-05 30.2 3.7 38 18-57 89-127 (139)
133 3pey_A ATP-dependent RNA helic 74.8 5.8 0.0002 33.1 6.2 76 11-96 66-151 (395)
134 2ykg_A Probable ATP-dependent 74.7 2.8 9.5E-05 38.6 4.5 70 21-96 62-142 (696)
135 1nkt_A Preprotein translocase 74.4 5.2 0.00018 38.5 6.2 53 20-80 152-208 (922)
136 3b6e_A Interferon-induced heli 73.8 2.6 8.9E-05 32.2 3.5 57 19-81 81-141 (216)
137 3fht_A ATP-dependent RNA helic 73.4 4.4 0.00015 34.2 5.1 77 11-96 86-174 (412)
138 1vee_A Proline-rich protein fa 71.2 3.5 0.00012 29.6 3.4 38 18-57 72-110 (134)
139 3l9o_A ATP-dependent RNA helic 69.5 2.3 7.7E-05 42.1 2.7 69 15-96 222-296 (1108)
140 2ipc_A Preprotein translocase 68.1 5.2 0.00018 38.7 4.6 54 20-81 120-177 (997)
141 3i5x_A ATP-dependent RNA helic 67.8 11 0.00036 33.7 6.6 71 21-96 147-232 (563)
142 4gl2_A Interferon-induced heli 67.3 1.3 4.4E-05 41.0 0.3 70 21-96 57-142 (699)
143 3fmp_B ATP-dependent RNA helic 67.1 8.2 0.00028 33.7 5.6 76 12-96 154-241 (479)
144 3ntd_A FAD-dependent pyridine 66.7 6.2 0.00021 35.3 4.8 47 9-57 513-559 (565)
145 3dmn_A Putative DNA helicase; 64.9 30 0.001 25.8 7.7 62 22-100 63-124 (174)
146 2l82_A Designed protein OR32; 63.5 36 0.0012 23.9 7.3 66 11-77 69-134 (162)
147 1uar_A Rhodanese; sulfurtransf 62.3 7.6 0.00026 31.5 4.2 39 17-57 230-270 (285)
148 3sqw_A ATP-dependent RNA helic 61.7 3.3 0.00011 37.5 2.0 72 20-96 95-181 (579)
149 3ics_A Coenzyme A-disulfide re 61.4 8.1 0.00028 34.9 4.5 48 8-57 529-576 (588)
150 2fwr_A DNA repair protein RAD2 60.5 7.1 0.00024 34.0 3.9 46 20-80 133-179 (472)
151 1urh_A 3-mercaptopyruvate sulf 60.1 9.4 0.00032 30.9 4.4 39 18-58 228-267 (280)
152 1tvm_A PTS system, galactitol- 60.1 23 0.00078 24.7 5.8 69 14-89 15-87 (113)
153 2fz4_A DNA repair protein RAD2 58.7 8.7 0.0003 30.4 3.8 46 20-80 133-179 (237)
154 1e0c_A Rhodanese, sulfurtransf 57.8 8 0.00027 31.1 3.5 39 17-57 220-259 (271)
155 3tg1_B Dual specificity protei 57.0 8.2 0.00028 28.5 3.2 37 20-56 93-136 (158)
156 4f67_A UPF0176 protein LPG2838 56.8 7.3 0.00025 31.9 3.1 39 18-58 179-218 (265)
157 2xgj_A ATP-dependent RNA helic 53.8 8.8 0.0003 37.5 3.6 66 18-96 127-198 (1010)
158 2p6r_A Afuhel308 helicase; pro 52.0 5.5 0.00019 37.0 1.8 69 19-96 67-144 (702)
159 4fn4_A Short chain dehydrogena 50.8 63 0.0022 25.9 7.8 59 20-80 31-92 (254)
160 3d8t_A Uroporphyrinogen-III sy 50.7 37 0.0013 27.5 6.5 71 5-81 143-217 (286)
161 2oca_A DAR protein, ATP-depend 50.7 17 0.00059 31.8 4.8 68 20-96 157-231 (510)
162 4a4z_A Antiviral helicase SKI2 50.2 13 0.00044 36.3 4.1 66 18-96 80-153 (997)
163 3fho_A ATP-dependent RNA helic 49.4 23 0.00079 31.3 5.4 77 10-96 179-265 (508)
164 2eg4_A Probable thiosulfate su 49.3 13 0.00046 29.0 3.5 39 17-57 181-219 (230)
165 3hzu_A Thiosulfate sulfurtrans 49.1 12 0.00042 31.0 3.4 45 11-57 250-296 (318)
166 3aay_A Putative thiosulfate su 46.0 18 0.00062 29.0 3.8 40 17-57 74-114 (277)
167 3jx9_A Putative phosphoheptose 45.9 21 0.00072 27.1 3.9 42 16-57 74-116 (170)
168 1e0c_A Rhodanese, sulfurtransf 45.5 17 0.00057 29.1 3.5 39 18-57 79-118 (271)
169 4es6_A Uroporphyrinogen-III sy 45.3 8.4 0.00029 30.8 1.7 44 4-50 113-160 (254)
170 3tp9_A Beta-lactamase and rhod 45.3 19 0.00064 31.6 4.1 47 9-57 416-463 (474)
171 1wcw_A Uroporphyrinogen III sy 44.8 35 0.0012 27.0 5.4 70 5-80 118-191 (261)
172 3hzu_A Thiosulfate sulfurtrans 44.5 20 0.00068 29.8 3.9 47 10-57 99-148 (318)
173 2va8_A SSO2462, SKI2-type heli 44.2 9.2 0.00032 35.4 2.0 68 20-96 75-151 (715)
174 4h1h_A LMO1638 protein; MCCF-l 43.8 1.1E+02 0.0037 25.4 8.5 65 16-80 8-86 (327)
175 3i2v_A Adenylyltransferase and 42.2 12 0.00039 26.1 1.8 36 20-57 72-114 (127)
176 1urh_A 3-mercaptopyruvate sulf 41.6 15 0.00053 29.5 2.8 39 18-57 84-123 (280)
177 3p45_A Caspase-6; protease, hu 40.4 74 0.0025 24.2 6.3 52 19-71 43-106 (179)
178 1rhs_A Sulfur-substituted rhod 40.3 18 0.00061 29.5 3.0 39 17-57 237-276 (296)
179 1t3k_A Arath CDC25, dual-speci 40.0 21 0.00072 26.1 3.1 40 18-57 83-130 (152)
180 3e4c_A Caspase-1; zymogen, inf 39.7 78 0.0027 26.2 6.8 50 20-70 60-118 (302)
181 1zl0_A Hypothetical protein PA 39.2 1.4E+02 0.0047 24.7 8.3 65 16-80 13-88 (311)
182 3mw8_A Uroporphyrinogen-III sy 39.1 17 0.00059 28.5 2.6 71 6-79 105-179 (240)
183 1uar_A Rhodanese; sulfurtransf 39.0 18 0.00063 29.1 2.8 39 18-57 77-116 (285)
184 2eg4_A Probable thiosulfate su 38.7 25 0.00085 27.4 3.5 41 13-55 54-95 (230)
185 2ouc_A Dual specificity protei 38.4 15 0.00051 25.9 2.0 38 20-57 83-127 (142)
186 3aay_A Putative thiosulfate su 37.9 27 0.00092 28.0 3.7 37 18-56 224-262 (277)
187 2wlr_A Putative thiosulfate su 37.6 29 0.00098 30.0 4.0 38 18-57 201-239 (423)
188 1v5x_A PRA isomerase, phosphor 37.1 49 0.0017 25.7 4.9 38 20-61 53-90 (203)
189 3tla_A MCCF; serine protease, 36.9 1.5E+02 0.0053 25.1 8.4 65 16-80 39-117 (371)
190 2h54_A Caspase-1; allosteric s 36.4 1.1E+02 0.0037 23.1 6.7 50 20-70 43-101 (178)
191 1rif_A DAR protein, DNA helica 35.8 41 0.0014 26.8 4.5 52 20-80 157-212 (282)
192 1pyo_A Caspase-2; apoptosis, c 35.6 91 0.0031 23.3 6.1 51 19-70 32-94 (167)
193 2wlr_A Putative thiosulfate su 35.1 34 0.0012 29.5 4.1 39 17-57 355-394 (423)
194 2zj8_A DNA helicase, putative 34.3 17 0.0006 33.6 2.2 68 20-96 68-144 (720)
195 3h11_B Caspase-8; cell death, 33.5 97 0.0033 25.1 6.4 36 34-70 50-85 (271)
196 1nsj_A PRAI, phosphoribosyl an 32.7 53 0.0018 25.5 4.5 37 20-60 54-90 (205)
197 1jr2_A Uroporphyrinogen-III sy 32.6 38 0.0013 27.4 3.7 44 4-50 140-184 (286)
198 1yt8_A Thiosulfate sulfurtrans 31.9 24 0.00081 31.7 2.6 46 10-57 420-466 (539)
199 3sr3_A Microcin immunity prote 31.9 1.7E+02 0.0057 24.4 7.8 65 16-80 9-87 (336)
200 1yt8_A Thiosulfate sulfurtrans 31.8 36 0.0012 30.4 3.8 37 19-57 321-358 (539)
201 3o8b_A HCV NS3 protease/helica 31.7 91 0.0031 28.9 6.5 64 20-96 257-324 (666)
202 3mwd_B ATP-citrate synthase; A 31.6 52 0.0018 27.7 4.5 56 20-77 80-136 (334)
203 3re1_A Uroporphyrinogen-III sy 31.5 10 0.00036 30.6 0.1 43 5-50 122-168 (269)
204 3od5_A Caspase-6; caspase doma 31.4 88 0.003 25.4 5.8 51 19-70 20-82 (278)
205 2lci_A Protein OR36; structura 31.3 1.2E+02 0.0042 20.5 7.7 61 18-80 49-109 (134)
206 1jq5_A Glycerol dehydrogenase; 30.9 1.5E+02 0.005 24.9 7.3 68 8-77 21-91 (370)
207 3ipz_A Monothiol glutaredoxin- 30.6 84 0.0029 21.2 4.8 52 12-63 9-64 (109)
208 2yv2_A Succinyl-COA synthetase 30.2 1.1E+02 0.0037 25.1 6.2 52 20-74 72-124 (297)
209 1hzm_A Dual specificity protei 29.9 24 0.00081 25.5 1.9 41 18-58 90-138 (154)
210 2lnd_A De novo designed protei 29.7 1.2E+02 0.0041 19.9 6.1 59 10-69 40-99 (112)
211 3mwy_W Chromo domain-containin 29.2 61 0.0021 30.5 5.0 62 17-81 283-354 (800)
212 2j48_A Two-component sensor ki 28.9 1.1E+02 0.0039 19.4 5.3 31 21-53 2-32 (119)
213 3olh_A MST, 3-mercaptopyruvate 28.3 21 0.00071 29.4 1.4 39 17-57 251-290 (302)
214 4e5s_A MCCFLIKE protein (BA_56 28.0 1.9E+02 0.0064 24.1 7.4 65 16-80 8-86 (331)
215 3czc_A RMPB; alpha/beta sandwi 27.6 1.5E+02 0.005 20.2 8.9 82 20-108 18-103 (110)
216 3r2u_A Metallo-beta-lactamase 27.5 13 0.00044 32.7 0.0 47 10-58 415-462 (466)
217 2nn3_C Caspase-1; cysteine pro 27.2 1.5E+02 0.0052 24.5 6.6 51 20-71 60-121 (310)
218 1okg_A Possible 3-mercaptopyru 27.0 24 0.00081 30.1 1.6 38 20-59 246-284 (373)
219 2yv1_A Succinyl-COA ligase [AD 26.8 1.4E+02 0.0048 24.3 6.3 53 19-74 70-123 (294)
220 1okg_A Possible 3-mercaptopyru 26.6 54 0.0018 27.9 3.8 39 18-57 93-132 (373)
221 1vlj_A NADH-dependent butanol 26.4 2.1E+02 0.0072 24.3 7.6 71 7-78 31-107 (407)
222 4g81_D Putative hexonate dehyd 25.7 2.5E+02 0.0085 22.2 7.9 59 20-80 33-94 (255)
223 2fp3_A Caspase NC; apoptosis, 25.7 1E+02 0.0035 25.6 5.3 90 19-110 60-164 (316)
224 1o2d_A Alcohol dehydrogenase, 25.7 2.3E+02 0.0078 23.8 7.6 70 7-78 29-104 (371)
225 1qle_D Cytochrome AA3, ccytoch 25.1 37 0.0013 19.5 1.7 20 51-70 3-22 (43)
226 3zyw_A Glutaredoxin-3; metal b 24.9 1.6E+02 0.0055 19.9 5.5 51 13-64 8-63 (111)
227 1m72_A Caspase-1; caspase, cys 24.7 1.2E+02 0.0041 24.5 5.4 51 20-71 32-93 (272)
228 1wik_A Thioredoxin-like protei 24.7 1.2E+02 0.0041 20.2 4.8 49 20-68 14-66 (109)
229 3cnb_A DNA-binding response re 24.2 1E+02 0.0034 20.8 4.4 51 20-78 8-60 (143)
230 1z63_A Helicase of the SNF2/RA 24.1 51 0.0017 28.7 3.3 54 16-81 82-137 (500)
231 3flu_A DHDPS, dihydrodipicolin 23.7 2.2E+02 0.0075 23.1 6.9 48 33-80 28-84 (297)
232 1rhs_A Sulfur-substituted rhod 23.2 48 0.0016 26.9 2.7 39 18-57 90-131 (296)
233 3l21_A DHDPS, dihydrodipicolin 23.2 2.2E+02 0.0076 23.2 6.9 48 33-80 36-92 (304)
234 3s5j_B Ribose-phosphate pyroph 23.1 73 0.0025 26.7 3.8 60 19-84 212-277 (326)
235 4ehd_A Caspase-3; caspase, apo 23.0 1.1E+02 0.0038 24.9 4.9 71 34-110 70-143 (277)
236 1oi7_A Succinyl-COA synthetase 22.7 2E+02 0.0068 23.3 6.4 53 19-74 64-117 (288)
237 1xky_A Dihydrodipicolinate syn 22.7 2.4E+02 0.0081 23.0 6.9 48 33-80 33-89 (301)
238 1qtn_A Caspase-8; apoptosis, d 22.6 2.4E+02 0.0081 20.9 6.8 36 34-70 56-91 (164)
239 3eod_A Protein HNR; response r 22.4 1.7E+02 0.0059 19.2 6.6 51 19-77 6-56 (130)
240 2wkj_A N-acetylneuraminate lya 22.4 2.4E+02 0.0081 23.0 6.9 48 33-80 32-88 (303)
241 3cpr_A Dihydrodipicolinate syn 22.3 2.4E+02 0.0083 23.0 6.9 48 33-80 37-93 (304)
242 1nw9_B Caspase 9, apoptosis-re 22.2 1.7E+02 0.0057 23.6 5.9 51 19-70 20-82 (277)
243 2yxg_A DHDPS, dihydrodipicolin 22.1 2.4E+02 0.0083 22.7 6.9 48 33-80 21-77 (289)
244 2j32_A Caspase-3; Pro-caspase3 22.0 1.2E+02 0.0042 24.0 4.9 51 20-71 16-78 (250)
245 2wci_A Glutaredoxin-4; redox-a 21.5 78 0.0027 22.6 3.3 47 19-65 33-83 (135)
246 3b4u_A Dihydrodipicolinate syn 21.5 2.3E+02 0.0077 23.0 6.6 47 33-79 24-79 (294)
247 3a5f_A Dihydrodipicolinate syn 21.5 2.3E+02 0.0079 22.9 6.6 46 34-79 23-77 (291)
248 2dko_A Caspase-3; low barrier 21.5 1.3E+02 0.0045 21.8 4.6 51 20-71 16-78 (146)
249 1naq_A Periplasmic divalent ca 21.3 1.1E+02 0.0039 21.2 4.0 32 17-48 6-37 (112)
250 2ehh_A DHDPS, dihydrodipicolin 21.2 2.4E+02 0.0083 22.8 6.7 47 33-79 21-76 (294)
251 3fkr_A L-2-keto-3-deoxyarabona 21.2 2.1E+02 0.0073 23.4 6.4 47 33-79 29-84 (309)
252 1o5k_A DHDPS, dihydrodipicolin 21.1 2.4E+02 0.0082 23.0 6.7 48 33-80 33-89 (306)
253 2yan_A Glutaredoxin-3; oxidore 20.8 1.6E+02 0.0056 19.3 4.8 49 20-68 16-68 (105)
254 3grc_A Sensor protein, kinase; 20.8 2E+02 0.0067 19.2 5.9 51 20-78 6-56 (140)
255 1c4o_A DNA nucleotide excision 20.8 2.4E+02 0.0082 25.8 7.2 66 20-87 53-145 (664)
256 2ojp_A DHDPS, dihydrodipicolin 20.5 2.4E+02 0.0081 22.8 6.5 48 33-80 22-78 (292)
257 3dah_A Ribose-phosphate pyroph 20.4 93 0.0032 26.0 4.0 60 19-84 215-280 (319)
258 3h11_A CAsp8 and FADD-like apo 20.4 45 0.0015 27.2 1.9 49 19-70 42-90 (272)
259 3h1t_A Type I site-specific re 20.4 85 0.0029 28.0 4.0 64 19-96 234-308 (590)
260 3olh_A MST, 3-mercaptopyruvate 20.2 55 0.0019 26.7 2.5 40 18-57 105-146 (302)
261 2xw6_A MGS, methylglyoxal synt 20.2 1E+02 0.0034 22.3 3.6 40 41-81 43-83 (134)
262 3si9_A DHDPS, dihydrodipicolin 20.2 2.5E+02 0.0087 23.0 6.7 48 33-80 43-99 (315)
263 3ilh_A Two component response 20.1 95 0.0032 21.0 3.5 24 22-47 11-34 (146)
264 3i42_A Response regulator rece 20.1 1.3E+02 0.0043 19.9 4.1 14 35-48 16-29 (127)
265 2hmc_A AGR_L_411P, dihydrodipi 20.0 2E+02 0.0068 24.1 6.0 48 33-80 47-100 (344)
266 3p9z_A Uroporphyrinogen III co 20.0 16 0.00053 28.8 -0.9 41 7-50 97-137 (229)
No 1
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=218.41 Aligned_cols=152 Identities=34% Similarity=0.530 Sum_probs=128.9
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
..|+..|.++|+...++.++||||+++ ..++.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 30 ~~K~~~L~~ll~~~~~~~k~lVF~~~~--~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 107 (185)
T 2jgn_A 30 SDKRSFLLDLLNATGKDSLTLVFVETK--KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA 107 (185)
T ss_dssp GGHHHHHHHHHHHC-CCSCEEEEESCH--HHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCH--HHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhh
Confidence 467888999998877788899999998 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHHh
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWA 157 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 157 (231)
+|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.+...++.+.+.+....+++|+++.++..
T Consensus 108 ~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~a~ 181 (185)
T 2jgn_A 108 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAY 181 (185)
T ss_dssp ---CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHC
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887754
No 2
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=2.2e-31 Score=214.24 Aligned_cols=148 Identities=34% Similarity=0.518 Sum_probs=133.6
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
..|+..|.++|... +.++||||+++ ..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 40 ~~K~~~L~~~l~~~--~~~~lVF~~~~--~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~ 115 (191)
T 2p6n_A 40 EAKMVYLLECLQKT--PPPVLIFAEKK--ADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 115 (191)
T ss_dssp GGHHHHHHHHHTTS--CSCEEEECSCH--HHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHH
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCH--HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchh
Confidence 46788888888765 35788899998 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEeccc-chHHHHHHHHHHHhCCCCCchhHHHH
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLE-QERHAGEIIRALEASGVPIPEDLDKM 155 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~ 155 (231)
+|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++. +...+..+.+.+...++++|+.+.++
T Consensus 116 ~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~ 188 (191)
T 2p6n_A 116 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 188 (191)
T ss_dssp TTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCCHHHHST
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCCHHHHhh
Confidence 9999999999999999999999999999999999999999999986 67788889999999999999987654
No 3
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=1.6e-30 Score=203.80 Aligned_cols=139 Identities=40% Similarity=0.600 Sum_probs=127.3
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
...|+..|.++|.... +.++||||+++ ..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 19 ~~~K~~~L~~ll~~~~-~~~~lVF~~~~--~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 95 (163)
T 2hjv_A 19 EENKFSLLKDVLMTEN-PDSCIIFCRTK--EHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA 95 (163)
T ss_dssp GGGHHHHHHHHHHHHC-CSSEEEECSSH--HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGG
T ss_pred hHHHHHHHHHHHHhcC-CCcEEEEECCH--HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChh
Confidence 3567888888887654 56778899998 77999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhC
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEAS 144 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~ 144 (231)
++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+.+.+...++.+.+.+..+
T Consensus 96 ~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 96 ARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp TTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred hcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999988888887776443
No 4
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=6.8e-31 Score=207.82 Aligned_cols=146 Identities=28% Similarity=0.504 Sum_probs=129.2
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
...|+..|.++|+.. ...++||||+++ ..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 15 ~~~K~~~L~~ll~~~-~~~~~lVF~~~~--~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 91 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL-EFNQVVIFVKSV--QRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 91 (172)
T ss_dssp GGGHHHHHHHHHHHS-CCSSEEEECSSH--HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCC
T ss_pred hHHHHHHHHHHHHhC-CCCcEEEEECCH--HHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCch
Confidence 356888888888766 456788899998 77999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEeccc-chHHHHHHHHHHHhCCCCCchh
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLE-QERHAGEIIRALEASGVPIPED 151 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 151 (231)
++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++. +...++.+.+.+.....++|..
T Consensus 92 ~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 92 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp STTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred hcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 99999999999999999999999999999999999999999999876 4566777777776655556554
No 5
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.97 E-value=2.9e-31 Score=208.25 Aligned_cols=144 Identities=32% Similarity=0.522 Sum_probs=126.2
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
+|+..|.+++... ...++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 16 ~K~~~l~~ll~~~-~~~~~lVF~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 92 (165)
T 1fuk_A 16 YKYECLTDLYDSI-SVTQAVIFCNTR--RKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 92 (165)
T ss_dssp GHHHHHHHHHHHT-TCSCEEEEESSH--HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTT
T ss_pred hHHHHHHHHHHhC-CCCCEEEEECCH--HHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhc
Confidence 4888888888876 456788899988 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchh
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPED 151 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 151 (231)
|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.+...+..+.+.+.....++|..
T Consensus 93 G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 93 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp TCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 9999999999999999999999999999999999999999999999888888888776665555543
No 6
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=204.40 Aligned_cols=138 Identities=32% Similarity=0.483 Sum_probs=122.3
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.|+..|.++++.. ..+++||||+++ ..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 20 ~K~~~L~~ll~~~-~~~~~lVF~~~~--~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 96 (175)
T 2rb4_A 20 DKYQALCNIYGSI-TIGQAIIFCQTR--RNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCAR 96 (175)
T ss_dssp HHHHHHHHHHTTS-CCSEEEEECSCH--HHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCT
T ss_pred hHHHHHHHHHHhC-CCCCEEEEECCH--HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhc
Confidence 3778888888765 466888899988 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCC------CCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCC
Q psy17587 85 GLDVKHLNLVVNYDCP------NHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASG 145 (231)
Q Consensus 85 Gldip~v~~VI~~d~P------~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~ 145 (231)
|+|+|++++||+||+| .++.+|+||+||+||.|+.|.+++|+.+.+...+..+.+.+....
T Consensus 97 Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 97 GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp TTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 9999999999999999 899999999999999999999999999999887777777765443
No 7
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.97 E-value=9e-30 Score=207.87 Aligned_cols=140 Identities=33% Similarity=0.483 Sum_probs=126.9
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
...|+..|.+++.... ++++||||+++ ..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 15 ~~~k~~~l~~ll~~~~-~~~~lVF~~~~--~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 91 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVAS-PDRAMVFTRTK--AETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA 91 (212)
T ss_dssp TTSHHHHHHHHHHHHC-CSCEEEECSSH--HHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTT
T ss_pred HHHHHHHHHHHHHhCC-CCeEEEEeCCH--HHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChh
Confidence 4678888888887654 56788899998 77999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCC
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASG 145 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~ 145 (231)
++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.+...++.+.+.+....
T Consensus 92 ~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 92 ARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp TCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred hcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 999999999999999999999999999999999999999999999999888888887776543
No 8
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=4.3e-29 Score=223.84 Aligned_cols=146 Identities=38% Similarity=0.580 Sum_probs=133.1
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.|...|.+.|..... ++||||+++ ..++.+++.|...|+.+..+||+|++.+|..++++|++|+.+|||||+++++
T Consensus 287 ~k~~~l~~~l~~~~~--~~lVF~~t~--~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~r 362 (434)
T 2db3_A 287 AKRSKLIEILSEQAD--GTIVFVETK--RGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASR 362 (434)
T ss_dssp GHHHHHHHHHHHCCT--TEEEECSSH--HHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTS
T ss_pred HHHHHHHHHHHhCCC--CEEEEEeCc--HHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhC
Confidence 456677777776543 388899998 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEeccc-chHHHHHHHHHHHhCCCCCchhHHH
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLE-QERHAGEIIRALEASGVPIPEDLDK 154 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~ 154 (231)
|+|+|+|++||+||+|.++++|+||+||+||.|+.|.|++|+++. +......+.+.+...++++|+++.+
T Consensus 363 GlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 363 GLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp SCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred CCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 999999999999999999999999999999999999999999954 6778888999999999999998654
No 9
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=5.8e-29 Score=213.13 Aligned_cols=140 Identities=33% Similarity=0.483 Sum_probs=124.9
Q ss_pred CCCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc
Q psy17587 3 AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA 82 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~ 82 (231)
...|+..|.++++... +.++||||+++ ..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 12 ~~~K~~~L~~ll~~~~-~~~~LVF~~t~--~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va 88 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS-PDRAMVFTRTK--AETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVA 88 (300)
T ss_dssp SSSHHHHHHHHHHHHC-CSSEEEECSSH--HHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTT
T ss_pred HHHHHHHHHHHHHhcC-CCCEEEEECCH--HHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechh
Confidence 4678888998888776 67788899998 77999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCC
Q psy17587 83 ARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASG 145 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~ 145 (231)
++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.+...++.+.+.+....
T Consensus 89 ~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 89 ARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp TCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred hcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999999999999999888888888776543
No 10
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=215.05 Aligned_cols=152 Identities=34% Similarity=0.530 Sum_probs=140.4
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
..|...|.++++....+.++||||+++ ..++.+++.|...++.+..+||+|++++|..+++.|++|+.+|||||++++
T Consensus 260 ~~~~~~l~~~l~~~~~~~~~lVf~~~~--~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 337 (417)
T 2i4i_A 260 SDKRSFLLDLLNATGKDSLTLVFVETK--KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA 337 (417)
T ss_dssp GGHHHHHHHHHHTCCTTCEEEEECSSH--HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHH
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEECCH--HHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhh
Confidence 345667778888777788999999998 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHHHHh
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWA 157 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 157 (231)
+|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.+...+..+.+.+.....++|.++.++..
T Consensus 338 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 411 (417)
T 2i4i_A 338 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAY 411 (417)
T ss_dssp TTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHT
T ss_pred cCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887765
No 11
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.91 E-value=5.2e-30 Score=202.14 Aligned_cols=137 Identities=31% Similarity=0.432 Sum_probs=124.5
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
..|+..|.++++.. .+.++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 15 ~~k~~~l~~ll~~~-~~~~~iVF~~~~--~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 15 EHKTALLVHLLKQP-EATRSIVFVRKR--ERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 91 (170)
Confidence 56788888888764 456788899988 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHh
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEA 143 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~ 143 (231)
+|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++++.+.+...+..+.+.+..
T Consensus 92 ~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 92 RGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 999999999999999999999999999999999999999999999888777777665543
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=1.3e-26 Score=213.41 Aligned_cols=129 Identities=28% Similarity=0.458 Sum_probs=116.9
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC---CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccC
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA---GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLD 87 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gld 87 (231)
...+.....+.++||||+++ ..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 330 ~~~~~~~~~~~~~iVF~~s~--~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiD 407 (563)
T 3i5x_A 330 KKQIKERDSNYKAIIFAPTV--KFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMD 407 (563)
T ss_dssp HHHHHHTTTCCEEEEECSCH--HHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCC
T ss_pred HHHHhhcCCCCcEEEEcCcH--HHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCC
Confidence 33444446678999999998 7799999999876 899999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHH
Q psy17587 88 VKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRAL 141 (231)
Q Consensus 88 ip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l 141 (231)
+|+|++||+||+|.++.+|+||+||+||.|+.|.|++|+.+.+...++.+.+..
T Consensus 408 ip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 408 FPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp CTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887666665544
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=4.2e-26 Score=211.14 Aligned_cols=129 Identities=28% Similarity=0.458 Sum_probs=117.1
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC---CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccC
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA---GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLD 87 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gld 87 (231)
...+.....+.++||||+++ ..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 279 ~~~~~~~~~~~~~iVF~~t~--~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiD 356 (579)
T 3sqw_A 279 KKQIKERDSNYKAIIFAPTV--KFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMD 356 (579)
T ss_dssp HHHHHHTTTCCEEEEECSSH--HHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCC
T ss_pred HHHHhhcCCCCcEEEECCcH--HHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCC
Confidence 34444446678899999988 7799999999876 899999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHH
Q psy17587 88 VKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRAL 141 (231)
Q Consensus 88 ip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l 141 (231)
+|+|++||+||+|.++.+|+||+||+||.|+.|.|++|+.+.+...++.+.+..
T Consensus 357 ip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 357 FPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp CTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999888766666554
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.94 E-value=1.3e-26 Score=204.92 Aligned_cols=144 Identities=34% Similarity=0.516 Sum_probs=129.5
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
++|...|.+++.... ..++||||+++ ..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 261 ~~k~~~l~~~~~~~~-~~~~lVf~~~~--~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 337 (410)
T 2j0s_A 261 EWKFDTLCDLYDTLT-ITQAVIFCNTK--RKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337 (410)
T ss_dssp THHHHHHHHHHHHHT-SSEEEEECSSH--HHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGS
T ss_pred HhHHHHHHHHHHhcC-CCcEEEEEcCH--HHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhh
Confidence 346666777666553 45788899998 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCch
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPE 150 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 150 (231)
+|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+.+.+...++.+.+++.....++|.
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 9999999999999999999999999999999999999999999999999888888888766555554
No 15
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.94 E-value=2.9e-26 Score=201.76 Aligned_cols=144 Identities=28% Similarity=0.508 Sum_probs=129.5
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.|...+..++... ...++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 244 ~k~~~l~~~~~~~-~~~~~lVf~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 320 (400)
T 1s2m_A 244 QKLHCLNTLFSKL-QINQAIIFCNST--NRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTR 320 (400)
T ss_dssp GHHHHHHHHHHHS-CCSEEEEECSSH--HHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSS
T ss_pred hHHHHHHHHHhhc-CCCcEEEEEecH--HHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc
Confidence 4555566666544 456888899988 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchh
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPED 151 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 151 (231)
|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++++++.+...++.+.+.+.....++|..
T Consensus 321 Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 321 GIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 9999999999999999999999999999999999999999999999988888888887666666654
No 16
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.93 E-value=1.6e-26 Score=204.01 Aligned_cols=148 Identities=31% Similarity=0.518 Sum_probs=116.3
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.+|+..|.+++.... ..++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 265 ~~~~~~l~~~~~~~~-~~~~lvf~~~~--~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 341 (414)
T 3eiq_A 265 EWKLDTLCDLYETLT-ITQAVIFINTR--RKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341 (414)
T ss_dssp TTHHHHHHHHHHSSC-CSSCEEECSCH--HHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC
T ss_pred HhHHHHHHHHHHhCC-CCcEEEEeCCH--HHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 346667777766553 45677799988 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHHH
Q psy17587 84 RGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDK 154 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 154 (231)
+|+|+|++++||+||+|++..+|+||+||+||.|+.|.|++|+++.+...++.+.+.+.....++|..+.+
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC----
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhh
Confidence 99999999999999999999999999999999999999999999999998888988888777777766544
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.93 E-value=1.7e-25 Score=195.98 Aligned_cols=144 Identities=28% Similarity=0.510 Sum_probs=125.3
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.|...|.+++... ...++||||+++ ..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 236 ~~~~~l~~~l~~~-~~~~~lvf~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 312 (391)
T 1xti_A 236 EKNRKLFDLLDVL-EFNQVVIFVKSV--QRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 312 (391)
T ss_dssp GHHHHHHHHHHHS-CCSEEEEECSCH--HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSS
T ss_pred hHHHHHHHHHHhc-CCCcEEEEeCcH--HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhc
Confidence 4455666666655 567888899998 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccc-hHHHHHHHHHHHhCCCCCchh
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQ-ERHAGEIIRALEASGVPIPED 151 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 151 (231)
|+|+|++++||++++|+++.+|+||+||+||.|+.|.|++++.+.+ ...++.+.+.+.....++|..
T Consensus 313 Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 313 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp CBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999999999999999999998774 455566666665555555543
No 18
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.93 E-value=1.5e-25 Score=208.13 Aligned_cols=130 Identities=13% Similarity=0.191 Sum_probs=118.5
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
++..|.++|.....+.++||||+++ ..++.+++.|...|+.+..+||+|++.+|..++++|++|+++|||||+++++|
T Consensus 253 ~~~~l~~~l~~~~~~~~~IVf~~sr--~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~G 330 (591)
T 2v1x_A 253 FIEDIVKLINGRYKGQSGIIYCFSQ--KDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMG 330 (591)
T ss_dssp HHHHHHHHHTTTTTTCEEEEECSSH--HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTT
T ss_pred HHHHHHHHHHHhccCCCeEEEeCcH--HHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcC
Confidence 3456777776665778899999988 77999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHH
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEI 137 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~ 137 (231)
+|+|+|++||+|++|.++++|+||+||+||.|.+|.|++++.+.+......+
T Consensus 331 ID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 331 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876544433
No 19
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.93 E-value=2.4e-25 Score=204.02 Aligned_cols=132 Identities=20% Similarity=0.335 Sum_probs=119.0
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.+...|.++|... .+.++||||+++ ..++.+++.|...|+.+..+||+|++++|..+++.|++|+.+|||||+++++
T Consensus 222 ~~~~~l~~~l~~~-~~~~~IVf~~sr--~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 222 KPLDQLMRYVQEQ-RGKSGIIYCNSR--AKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp SHHHHHHHHHHHT-TTCCEEEECSSH--HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CHHHHHHHHHHhc-CCCcEEEEeCCH--HHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 4566677777655 566788899988 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHH
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIR 139 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~ 139 (231)
|+|+|+|++||+||+|.++++|+||+||+||.|..|.|++++.+.+....+.++.
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999887765544443
No 20
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=3.6e-25 Score=191.72 Aligned_cols=138 Identities=34% Similarity=0.472 Sum_probs=124.5
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.|+..|.+.++ ..+.++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 225 ~~~~~l~~~l~--~~~~~~lvf~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 300 (367)
T 1hv8_A 225 ERFEALCRLLK--NKEFYGLVFCKTK--RDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSR 300 (367)
T ss_dssp GHHHHHHHHHC--STTCCEEEECSSH--HHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHH
T ss_pred HHHHHHHHHHh--cCCCcEEEEECCH--HHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhc
Confidence 45566666666 3467788899988 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCC
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGV 146 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~ 146 (231)
|+|+|++++||++++|+++.+|+||+||+||.|+.|.+++++.+.+...+..+.+.++.+..
T Consensus 301 Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 301 GIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp HCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred CCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999998888888777755433
No 21
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.92 E-value=8.9e-25 Score=192.45 Aligned_cols=141 Identities=27% Similarity=0.412 Sum_probs=121.2
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
|...|.+++... ...++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 253 ~~~~l~~~~~~~-~~~~~lvf~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 329 (412)
T 3fht_A 253 KFQALCNLYGAI-TIAQAMIFCHTR--KTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 329 (412)
T ss_dssp HHHHHHHHHHHH-SSSEEEEECSSH--HHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSS
T ss_pred HHHHHHHHHhhc-CCCCEEEEeCCH--HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccC
Confidence 445555555544 356788899998 77999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCC------CHhHHHHHhcccCCCCCceeEEEEecccc-hHHHHHHHHHHHhCCCCCc
Q psy17587 86 LDVKHLNLVVNYDCPN------HYEDYVHRCGRTGRAGNKGFAYTFITLEQ-ERHAGEIIRALEASGVPIP 149 (231)
Q Consensus 86 ldip~v~~VI~~d~P~------~~~~y~qr~GR~gR~g~~g~~i~~~~~~~-~~~~~~~~~~l~~~~~~~~ 149 (231)
+|+|++++||+||+|+ +..+|+||+||+||.|+.|.|++++.+.+ ...++.+.+.+.....+++
T Consensus 330 idip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 330 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp CCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 9999999999999995 67899999999999999999999998775 6666677777755544444
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.92 E-value=3.5e-24 Score=187.28 Aligned_cols=131 Identities=32% Similarity=0.488 Sum_probs=113.8
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccC
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLD 87 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gld 87 (231)
..+..++... ...++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 232 ~~l~~~~~~~-~~~~~lvf~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 308 (395)
T 3pey_A 232 DVLTELYGLM-TIGSSIIFVATK--KTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGID 308 (395)
T ss_dssp HHHHHHHTTT-TSSEEEEECSCH--HHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCC
T ss_pred HHHHHHHHhc-cCCCEEEEeCCH--HHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCC
Confidence 3344444333 467888899998 7799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCC------CHhHHHHHhcccCCCCCceeEEEEecccchH-HHHHHHHHH
Q psy17587 88 VKHLNLVVNYDCPN------HYEDYVHRCGRTGRAGNKGFAYTFITLEQER-HAGEIIRAL 141 (231)
Q Consensus 88 ip~v~~VI~~d~P~------~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~-~~~~~~~~l 141 (231)
+|++++||+||+|+ ++.+|+||+||+||.|+.|.|++++.+.+.. ....+.+.+
T Consensus 309 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 309 IPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp CTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred cccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 99999999999999 9999999999999999999999999876543 334444443
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.90 E-value=7.7e-26 Score=198.16 Aligned_cols=146 Identities=32% Similarity=0.521 Sum_probs=0.0
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
+|...+.+.+... ...++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 245 ~~~~~l~~~~~~~-~~~~~lVf~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 321 (394)
T 1fuu_A 245 YKYECLTDLYDSI-SVTQAVIFCNTR--RKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 321 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHhcC-CCCcEEEEECCH--HHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhc
Confidence 3555566665544 456788899988 7799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHHhCCCCCchhHH
Q psy17587 85 GLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLD 153 (231)
Q Consensus 85 Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 153 (231)
|+|+|++++||++|+|+++.+|+||+||+||.|+.|.|++++++.+...++.+.+.+.....++|..+.
T Consensus 322 Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 322 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchh
Confidence 999999999999999999999999999999999999999999999888888888877766666665443
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.90 E-value=4.8e-24 Score=194.77 Aligned_cols=125 Identities=26% Similarity=0.296 Sum_probs=68.5
Q ss_pred CCchhhhhcccccc---CCCCeEEEEcCChhHHHHHHHHHHHHHC------------CCCeeeccCCCCHHHHHHHHHHH
Q psy17587 4 GYPCLSLHGGIDQY---DRDSTIVDFKNGKVRLLVCAIVKELMKA------------GYPCLSLHGGIDQYDRDSTIVDF 68 (231)
Q Consensus 4 ~~k~~~L~~~L~~~---~~~~~iiiF~~~~~~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~~~~F 68 (231)
..|+..|.+.|... ..+.++||||+++ ..++.+++.|... |.....+||+|++.+|..++++|
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTR--ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSH--HHHHHHHHHHTTCSGGGSCCEEC-------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccH--HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 34677788888654 5678999999988 7899999999765 55566778889999999999999
Q ss_pred hC-CCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchH
Q psy17587 69 KN-GKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQER 132 (231)
Q Consensus 69 ~~-g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~ 132 (231)
++ |+++|||||+++++|+|+|+|++||+||+|+++..|+||+|| ||. +.|.++.|+++.+..
T Consensus 449 ~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 449 KTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp -----CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred cccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 99 999999999999999999999999999999999999999999 998 789999999887543
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.89 E-value=2.7e-25 Score=200.92 Aligned_cols=141 Identities=27% Similarity=0.401 Sum_probs=0.0
Q ss_pred CCchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 4 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 4 ~~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
+++...|..++... ...++||||+++ ..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 318 ~~~~~~l~~~~~~~-~~~~~lvF~~s~--~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~ 394 (479)
T 3fmp_B 318 DEKFQALCNLYGAI-TIAQAMIFCHTR--KTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 394 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhc-cCCceEEEeCcH--HHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccc
Confidence 45566666666544 356788899988 779999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCC------CHhHHHHHhcccCCCCCceeEEEEecccc-hHHHHHHHHHHHhCCCC
Q psy17587 84 RGLDVKHLNLVVNYDCPN------HYEDYVHRCGRTGRAGNKGFAYTFITLEQ-ERHAGEIIRALEASGVP 147 (231)
Q Consensus 84 ~Gldip~v~~VI~~d~P~------~~~~y~qr~GR~gR~g~~g~~i~~~~~~~-~~~~~~~~~~l~~~~~~ 147 (231)
+|+|+|++++||+||+|. +..+|+||+||+||.|+.|.|++|+.+.+ ...++.+.+.+......
T Consensus 395 ~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~ 465 (479)
T 3fmp_B 395 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIER 465 (479)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceE
Confidence 999999999999999995 56899999999999999999999998765 55555565655444333
No 26
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.89 E-value=1.5e-23 Score=179.65 Aligned_cols=117 Identities=34% Similarity=0.587 Sum_probs=104.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEe
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNY 97 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~ 97 (231)
..++++||||+++ ..++.+++.|. .+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+|
T Consensus 218 ~~~~~~lvf~~~~--~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~ 291 (337)
T 2z0m_A 218 NKDKGVIVFVRTR--NRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINF 291 (337)
T ss_dssp CCCSSEEEECSCH--HHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEES
T ss_pred CCCCcEEEEEcCH--HHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEe
Confidence 3567788899988 77999988885 68899999999999999999999999999999999999999999999999
Q ss_pred cCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHH
Q psy17587 98 DCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRAL 141 (231)
Q Consensus 98 d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l 141 (231)
++|+++.+|+||+||+||.|+.|.|++++. .+...++.+.+.+
T Consensus 292 ~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 292 DAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp SCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred cCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 999999999999999999999999999999 7776666665554
No 27
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=2.6e-23 Score=185.25 Aligned_cols=125 Identities=30% Similarity=0.392 Sum_probs=112.5
Q ss_pred CCchhhhhcccccc---CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccC--------CCCHHHHHHHHHHHhCCC
Q psy17587 4 GYPCLSLHGGIDQY---DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHG--------GIDQYDRDSTIVDFKNGK 72 (231)
Q Consensus 4 ~~k~~~L~~~L~~~---~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg--------~~~~~~R~~~~~~F~~g~ 72 (231)
..|+..|.++|... ..+.++||||+++ ..++.+++.|...|+.+..+|| +|++.+|..+++.|++|+
T Consensus 342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~--~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYR--ETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCH--HHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEEccH--HHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 34677788888765 4678899999988 7899999999999999999999 999999999999999999
Q ss_pred ccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 73 VRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 73 ~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+ |.++.|++++..
T Consensus 420 ~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 420 FNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp CSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred ceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999998 999999988753
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.89 E-value=9.4e-24 Score=192.43 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=88.6
Q ss_pred Cchhhhhcccccc---CCCCeEEEEcCChhHHHHHHHHHHHHHCC------------CCeeeccCCCCHHHHHHHHHHHh
Q psy17587 5 YPCLSLHGGIDQY---DRDSTIVDFKNGKVRLLVCAIVKELMKAG------------YPCLSLHGGIDQYDRDSTIVDFK 69 (231)
Q Consensus 5 ~k~~~L~~~L~~~---~~~~~iiiF~~~~~~~~~~~l~~~L~~~~------------~~~~~lhg~~~~~~R~~~~~~F~ 69 (231)
.|+..|.++|... .++.++||||+++ ..++.+++.|...+ .....+||+|++.+|..++++|+
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTR--ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSH--HHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcH--HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 4667777777654 4568899999988 78999999998763 34445566999999999999999
Q ss_pred C-CCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHH
Q psy17587 70 N-GKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHA 134 (231)
Q Consensus 70 ~-g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~ 134 (231)
+ |+++|||||+++++|+|+|+|++||+||+|+++..|+||+|| ||. +.|.++.|+++.+....
T Consensus 449 ~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 449 ASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp ---CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred cCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 9 999999999999999999999999999999999999999999 998 88999999988765443
No 29
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.88 E-value=9.5e-23 Score=172.23 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=96.6
Q ss_pred CCCchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHC-CCCeeeccCCCCHHHHHHHHHHHhCC-Ccc-EEEe
Q psy17587 3 AGYPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKA-GYPCLSLHGGIDQYDRDSTIVDFKNG-KVR-LLIA 78 (231)
Q Consensus 3 ~~~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~-vLva 78 (231)
...|+..|.++|... ..+.++||||+.. ..++.+...|... |+.+..+||++++.+|..++++|+++ +++ +|++
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~--~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFV--DMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCH--HHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccH--HHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 345778888888765 3467899999987 7799999999875 99999999999999999999999998 677 7899
Q ss_pred cCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeE--EEEeccc
Q psy17587 79 TSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFA--YTFITLE 129 (231)
Q Consensus 79 T~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~--i~~~~~~ 129 (231)
|+++++|+|++.+++||+||+||++..|.||+||++|.|+.+.+ +.+++.+
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999986554 5566655
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.88 E-value=2.6e-22 Score=177.97 Aligned_cols=125 Identities=21% Similarity=0.288 Sum_probs=107.7
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee-eccCCCCHHHHHHHHHHHhCCCccEEEe----cC
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL-SLHGGIDQYDRDSTIVDFKNGKVRLLIA----TS 80 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~R~~~~~~F~~g~~~vLva----T~ 80 (231)
+...|.++|+.. +.++||||+++ ..++.+++.|...|+++. .+||. +|. ++.|++|+++|||| |+
T Consensus 240 ~~~~l~~~l~~~--~~~~lVF~~~~--~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~ 309 (414)
T 3oiy_A 240 SKEKLVELLEIF--RDGILIFAQTE--EEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYG 309 (414)
T ss_dssp CHHHHHHHHHHH--CSSEEEEESSH--HHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTC
T ss_pred HHHHHHHHHHHc--CCCEEEEECCH--HHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCc
Confidence 455666777663 47788899998 779999999999999998 99995 344 99999999999999 99
Q ss_pred ccccccCCCC-CcEEEEecCC--CCHhHHHHHhcccCCCC----CceeEEEEecccchHHHHHHHHHHH
Q psy17587 81 VAARGLDVKH-LNLVVNYDCP--NHYEDYVHRCGRTGRAG----NKGFAYTFITLEQERHAGEIIRALE 142 (231)
Q Consensus 81 ~~~~Gldip~-v~~VI~~d~P--~~~~~y~qr~GR~gR~g----~~g~~i~~~~~~~~~~~~~~~~~l~ 142 (231)
++++|+|+|+ |++||+||+| .++.+|+||+||+||.| +.|.+++|+ .+...+..+.+.+.
T Consensus 310 ~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 310 KLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp CCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred hhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999999999 9999999999 99999999999999988 589999999 55555666666664
No 31
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.88 E-value=3.9e-23 Score=194.39 Aligned_cols=127 Identities=22% Similarity=0.252 Sum_probs=80.1
Q ss_pred CCchhhhhcccccc---CCCCeEEEEcCChhHHHHHHHHHHHHHCC----CCeeec--------cCCCCHHHHHHHHHHH
Q psy17587 4 GYPCLSLHGGIDQY---DRDSTIVDFKNGKVRLLVCAIVKELMKAG----YPCLSL--------HGGIDQYDRDSTIVDF 68 (231)
Q Consensus 4 ~~k~~~L~~~L~~~---~~~~~iiiF~~~~~~~~~~~l~~~L~~~~----~~~~~l--------hg~~~~~~R~~~~~~F 68 (231)
..|+..|.++|... .++.++||||+++ ..++.+++.|...+ +++..+ ||+|++++|..++++|
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~--~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTR--ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCH--HHHHHHHHHHHHCTTCCSCCEEC-------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcH--HHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 34677777777655 3567889999988 77999999999887 899999 5599999999999999
Q ss_pred hC-CCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHH
Q psy17587 69 KN-GKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHA 134 (231)
Q Consensus 69 ~~-g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~ 134 (231)
++ |+.+|||||+++++|||+|+|++||+||+|+++.+|+||+|| ||. +.|.++++++..+....
T Consensus 457 ~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 457 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ----CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHH
T ss_pred HhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHH
Confidence 98 999999999999999999999999999999999999999999 998 67999999987765433
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=191.32 Aligned_cols=119 Identities=25% Similarity=0.365 Sum_probs=96.4
Q ss_pred CchhhhhccccccC---C-CCeEEEEcCChhHHHHHHHHHHHHHC------CCCeeeccCC--------CCHHHHHHHHH
Q psy17587 5 YPCLSLHGGIDQYD---R-DSTIVDFKNGKVRLLVCAIVKELMKA------GYPCLSLHGG--------IDQYDRDSTIV 66 (231)
Q Consensus 5 ~k~~~L~~~L~~~~---~-~~~iiiF~~~~~~~~~~~l~~~L~~~------~~~~~~lhg~--------~~~~~R~~~~~ 66 (231)
.|+..|.+.|.... + +.++||||+++ ..++.|++.|... |+++..+||+ |++.+|..+++
T Consensus 381 ~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~--~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 381 EKLTKLRNTIMEQYTRTEESARGIIFTKTR--QSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp -CSSCSHHHHHHHHHHSSSCCCEEEECSCH--HHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECcH--HHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 45666666665421 2 68888899988 7899999999877 8999999999 99999999999
Q ss_pred HHhCCCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecc
Q psy17587 67 DFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITL 128 (231)
Q Consensus 67 ~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~ 128 (231)
+|++|+++|||||+++++|||+|+|++||+||+|+++.+|+||+||+||.| .+++++.+
T Consensus 459 ~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 459 KFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp HHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred HHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999999999999999999999999977655 44444443
No 33
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=7.1e-22 Score=185.50 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=112.4
Q ss_pred hhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 7 CLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 7 ~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
...|+..|... ..+.++||||+++ ..++.+++.|...|+++.++||+|++.+|..++++|++|+++|||||+++++|
T Consensus 431 ~~~Ll~~l~~~~~~~~~vlVf~~t~--~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~G 508 (661)
T 2d7d_A 431 IDDLIGEIQARIERNERVLVTTLTK--KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 508 (661)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECSSH--HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTT
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCH--HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCC
Confidence 44555555544 3567999999998 77999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecC-----CCCHhHHHHHhcccCCCCCceeEEEEecccchHHHH
Q psy17587 86 LDVKHLNLVVNYDC-----PNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAG 135 (231)
Q Consensus 86 ldip~v~~VI~~d~-----P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~ 135 (231)
+|+|+|++||++|. |.+..+|+||+||+||. ..|.|++|+++.+....+
T Consensus 509 lDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 509 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEI 562 (661)
T ss_dssp CCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHH
T ss_pred cccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHH
Confidence 99999999999997 99999999999999998 689999999887654443
No 34
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.87 E-value=1.8e-22 Score=193.17 Aligned_cols=124 Identities=26% Similarity=0.297 Sum_probs=73.3
Q ss_pred Cchhhhhcccccc---CCCCeEEEEcCChhHHHHHHHHHHHHHC------------CCCeeeccCCCCHHHHHHHHHHHh
Q psy17587 5 YPCLSLHGGIDQY---DRDSTIVDFKNGKVRLLVCAIVKELMKA------------GYPCLSLHGGIDQYDRDSTIVDFK 69 (231)
Q Consensus 5 ~k~~~L~~~L~~~---~~~~~iiiF~~~~~~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~~~~F~ 69 (231)
.|+..|.+.|... ..+.++||||+++ ..++.|++.|... |..+..+||+|++.+|..++++|+
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~--~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTR--ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSH--HHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcH--HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 3677788888652 5578999999988 7899999999763 566677899999999999999999
Q ss_pred C-CCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchH
Q psy17587 70 N-GKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQER 132 (231)
Q Consensus 70 ~-g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~ 132 (231)
+ |+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.++.|+++.+..
T Consensus 691 ~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp ---CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred ccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 9 999999999999999999999999999999999999999999 998 789999999877543
No 35
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.87 E-value=1.2e-21 Score=184.07 Aligned_cols=128 Identities=21% Similarity=0.314 Sum_probs=112.6
Q ss_pred hhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 7 CLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 7 ~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
...|+..|... ..+.++||||+++ ..++.|++.|...|+++.++||+|++.+|..++++|++|+++|||||+++++|
T Consensus 425 ~~~Ll~~l~~~~~~~~~vlVf~~t~--~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~G 502 (664)
T 1c4o_A 425 ILDLMEGIRERAARGERTLVTVLTV--RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREG 502 (664)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSH--HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTT
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcC
Confidence 44455555443 3578999999998 77999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecC-----CCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHH
Q psy17587 86 LDVKHLNLVVNYDC-----PNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEI 137 (231)
Q Consensus 86 ldip~v~~VI~~d~-----P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~ 137 (231)
+|+|+|++||++|. |.+..+|+||+||+||.+ .|.+++++.+.+....+.+
T Consensus 503 lDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 503 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred ccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 99999999999998 999999999999999985 7999999988765444333
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.87 E-value=1.9e-22 Score=190.61 Aligned_cols=123 Identities=21% Similarity=0.193 Sum_probs=108.9
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.|...|.+.|... ..++.+||||+++ ..++.|++.|...|+++..+||++++++|..+.+.|+.| .|+||||+++
T Consensus 416 ~K~~al~~~i~~~~~~~~pvLVft~s~--~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAg 491 (844)
T 1tf5_A 416 GKFKAVAEDVAQRYMTGQPVLVGTVAV--ETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG 491 (844)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCH--HHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSS
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCH--HHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccc
Confidence 4566777777653 4567899999998 779999999999999999999999999988776667665 6999999999
Q ss_pred cccCCC--------CCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 84 RGLDVK--------HLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 84 ~Gldip--------~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
||+|++ ++.+|||||+|.+...|+||+||+||.|.+|.+++|++..|.
T Consensus 492 RG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 492 RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999 788999999999999999999999999999999999997763
No 37
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.87 E-value=3.2e-23 Score=189.18 Aligned_cols=141 Identities=28% Similarity=0.428 Sum_probs=98.1
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
+...+..++... ...++||||+++ ..++.+++.|...++.+.++||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 344 k~~~l~~ll~~~-~~~~~LVF~~s~--~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~G 420 (508)
T 3fho_A 344 KYNVLVELYGLL-TIGQSIIFCKKK--DTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 420 (508)
T ss_dssp HHHHHHHHHC----CCCEEEBCSST--TTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----
T ss_pred HHHHHHHHHHhc-CCCcEEEEECCH--HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcC
Confidence 344455555544 456778899998 77999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCC------CCHhHHHHHhcccCCCCCceeEEEEeccc-chHHHHHHHHHHHhCCCCCc
Q psy17587 86 LDVKHLNLVVNYDCP------NHYEDYVHRCGRTGRAGNKGFAYTFITLE-QERHAGEIIRALEASGVPIP 149 (231)
Q Consensus 86 ldip~v~~VI~~d~P------~~~~~y~qr~GR~gR~g~~g~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~ 149 (231)
+|+|++++||++|+| .++.+|+||+||+||.|+.|.|++|+.+. +...++.+.+.+.....+++
T Consensus 421 iDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~ 491 (508)
T 3fho_A 421 IDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVP 491 (508)
T ss_dssp CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC---
T ss_pred CCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCC
Confidence 999999999999999 78999999999999999999999999854 55556666666655544444
No 38
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.86 E-value=4.4e-22 Score=178.76 Aligned_cols=124 Identities=17% Similarity=0.195 Sum_probs=100.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE---
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN--- 96 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~--- 96 (231)
+.+++|||+++ ..++.+++.|...++++..+|| .+|..+++.|++|+++|||||+++++|+|+| +++||+
T Consensus 177 ~~~~lVF~~s~--~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~ 249 (440)
T 1yks_A 177 KRPTAWFLPSI--RAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRT 249 (440)
T ss_dssp CSCEEEECSCH--HHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCE
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCc
Confidence 56788899998 7799999999999999999999 4688999999999999999999999999999 999986
Q ss_pred ----------------ecCCCCHhHHHHHhcccCCC-CCceeEEEEe---cccchHHHHHHHHHHHhCCCCCch
Q psy17587 97 ----------------YDCPNHYEDYVHRCGRTGRA-GNKGFAYTFI---TLEQERHAGEIIRALEASGVPIPE 150 (231)
Q Consensus 97 ----------------~d~P~~~~~y~qr~GR~gR~-g~~g~~i~~~---~~~~~~~~~~~~~~l~~~~~~~~~ 150 (231)
++.|.+.++|+||+||+||. |..|.|++|+ ++.+...+..+...+.....+++.
T Consensus 250 ~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 250 AFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp EEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred cceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 99999999999999999997 6799999996 566766666776666555555554
No 39
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.86 E-value=4.8e-22 Score=193.13 Aligned_cols=123 Identities=26% Similarity=0.305 Sum_probs=73.8
Q ss_pred Cchhhhhcccccc---CCCCeEEEEcCChhHHHHHHHHHHHHHC------------CCCeeeccCCCCHHHHHHHHHHHh
Q psy17587 5 YPCLSLHGGIDQY---DRDSTIVDFKNGKVRLLVCAIVKELMKA------------GYPCLSLHGGIDQYDRDSTIVDFK 69 (231)
Q Consensus 5 ~k~~~L~~~L~~~---~~~~~iiiF~~~~~~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~~~~F~ 69 (231)
.|+..|.++|... ..+.++||||+++ ..++.|++.|... |..+..+||+|++.+|..++++|+
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~rvLIF~~t~--~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTR--ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp HHHHHHHHHHHHTTTSCTTCCEEEEESSH--HHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEeCCH--HHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 3677777777654 4578999999988 7899999999876 555667789999999999999999
Q ss_pred C-CCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 70 N-GKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 70 ~-g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
+ |+++|||||+++++|||+|+|++||+||+|+++.+|+||+|| ||. ..|.++.+++..+.
T Consensus 691 ~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp ---CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred ccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9 999999999999999999999999999999999999999999 998 67999999887643
No 40
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.86 E-value=1.5e-21 Score=182.02 Aligned_cols=133 Identities=20% Similarity=0.189 Sum_probs=113.0
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCC
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDV 88 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldi 88 (231)
.++..|.+. ..++||||+++ ..++.+++.|...++++..+||+ +|.+++++|++|+.+||||||++++|+|+
T Consensus 346 ~ll~~l~~~--~~~~LVF~~s~--~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi 417 (618)
T 2whx_A 346 TGFDWITDY--QGKTVWFVPSI--KAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANF 417 (618)
T ss_dssp SSCHHHHHC--CSCEEEECSSH--HHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCC
T ss_pred HHHHHHHhC--CCCEEEEECCh--hHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCccc
Confidence 344444432 56788899998 77999999999999999999985 68889999999999999999999999999
Q ss_pred CCCcEE--------------------EEecCCCCHhHHHHHhcccCCCCC-ceeEEEEec---ccchHHHHHHHHHHHhC
Q psy17587 89 KHLNLV--------------------VNYDCPNHYEDYVHRCGRTGRAGN-KGFAYTFIT---LEQERHAGEIIRALEAS 144 (231)
Q Consensus 89 p~v~~V--------------------I~~d~P~~~~~y~qr~GR~gR~g~-~g~~i~~~~---~~~~~~~~~~~~~l~~~ 144 (231)
| +++| |+||+|.+.++|+||+||+||.|. .|.|++|++ +.+...+..++..+...
T Consensus 418 ~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~ 496 (618)
T 2whx_A 418 R-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLD 496 (618)
T ss_dssp C-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHT
T ss_pred C-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccc
Confidence 8 8887 888999999999999999999975 899999998 67777777777766665
Q ss_pred CCCCch
Q psy17587 145 GVPIPE 150 (231)
Q Consensus 145 ~~~~~~ 150 (231)
...+++
T Consensus 497 ~~~~~~ 502 (618)
T 2whx_A 497 NIYTPE 502 (618)
T ss_dssp TCCCTT
T ss_pred cccCCc
Confidence 555554
No 41
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.86 E-value=1.4e-21 Score=190.35 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=115.6
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHH-CCCCeeeccCCCCHHHHHHHHHHHhCCC--ccEEEecCc
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMK-AGYPCLSLHGGIDQYDRDSTIVDFKNGK--VRLLIATSV 81 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~--~~vLvaT~~ 81 (231)
.|+..|.+++.. ..+.++||||+++ ..++.+++.|.. .|+++..+||+|++.+|..+++.|++|+ ++|||||++
T Consensus 489 ~K~~~L~~ll~~-~~~~k~iVF~~~~--~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v 565 (968)
T 3dmq_A 489 PRVEWLMGYLTS-HRSQKVLVICAKA--ATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEI 565 (968)
T ss_dssp HHHHHHHHHHHH-TSSSCCCEECSST--HHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCC
T ss_pred HHHHHHHHHHHh-CCCCCEEEEeCcH--HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecch
Confidence 467778888776 4567788899998 779999999984 5999999999999999999999999998 999999999
Q ss_pred cccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccchHHHHHHHHHHH
Q psy17587 82 AARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALE 142 (231)
Q Consensus 82 ~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~~~~~~~~~l~ 142 (231)
+++|+|+|++++||+||+|+++..|.||+||+||.|+.+.++++....+....+.+.+.+.
T Consensus 566 ~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~ 626 (968)
T 3dmq_A 566 GSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYH 626 (968)
T ss_dssp TTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHH
T ss_pred hhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887766654444444444555553
No 42
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.84 E-value=3.3e-21 Score=179.38 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=107.8
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.|...|.+.+... ..++.+||||+++ ..++.|++.|...|+++..+||++.++++..+.+.|+.| .|+||||+++
T Consensus 458 eK~~al~~~I~~~~~~gqpVLVFt~S~--e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAg 533 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKGQPVLVGTTSI--EKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESSH--HHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTT
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCH--HHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhh
Confidence 4566777777654 3578899999998 779999999999999999999997777777666677766 6999999999
Q ss_pred cccCCC--------CCcEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 84 RGLDVK--------HLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 84 ~Gldip--------~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
||+||+ +..+|||+++|.+...|+||+||+||.|.+|.+++|++.+|.
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999998 566999999999999999999999999999999999998873
No 43
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.84 E-value=6.1e-21 Score=179.26 Aligned_cols=116 Identities=20% Similarity=0.229 Sum_probs=102.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE--
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN-- 96 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~-- 96 (231)
.+.++||||+++ ..++.+++.|...++++..+||+ +|.++++.|++|+++|||||+++++|+|+| +++||+
T Consensus 409 ~~~~~lVF~~s~--~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASV--KMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSH--HHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECCH--HHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 367888899998 77999999999999999999994 799999999999999999999999999999 999998
Q ss_pred ------------------ecCCCCHhHHHHHhcccCCC-CCceeEEEEe---cccchHHHHHHHHHH
Q psy17587 97 ------------------YDCPNHYEDYVHRCGRTGRA-GNKGFAYTFI---TLEQERHAGEIIRAL 141 (231)
Q Consensus 97 ------------------~d~P~~~~~y~qr~GR~gR~-g~~g~~i~~~---~~~~~~~~~~~~~~l 141 (231)
||+|.+.++|+||+||+||. |+.|.|++|+ .+.+...+..+...+
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67999999999999999999 7899999996 455655555554444
No 44
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.83 E-value=9.4e-21 Score=178.85 Aligned_cols=123 Identities=17% Similarity=0.150 Sum_probs=111.1
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.|...|.+.+... ..++.+||||+++ ..++.|++.|...|+++.++||++.++++..+.++|+.| .|+||||+++
T Consensus 425 ~K~~al~~~i~~~~~~gqpvLVft~si--e~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 500 (853)
T 2fsf_A 425 EKIQAIIEDIKERTAKGQPVLVGTISI--EKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAG 500 (853)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEESSH--HHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECcH--HHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEeccccc
Confidence 4667777777654 4578899999998 779999999999999999999999999998888999988 6999999999
Q ss_pred cccCCCCC-------------------------------------cEEEEecCCCCHhHHHHHhcccCCCCCceeEEEEe
Q psy17587 84 RGLDVKHL-------------------------------------NLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFI 126 (231)
Q Consensus 84 ~Gldip~v-------------------------------------~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~ 126 (231)
||+||+.. .+||+++.|.+...|.||+||+||.|.+|.+++|+
T Consensus 501 RGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 501 RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp SCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEe
Confidence 99999974 59999999999999999999999999999999999
Q ss_pred cccch
Q psy17587 127 TLEQE 131 (231)
Q Consensus 127 ~~~~~ 131 (231)
+..|.
T Consensus 581 s~eD~ 585 (853)
T 2fsf_A 581 SMEDA 585 (853)
T ss_dssp ETTSG
T ss_pred cccHH
Confidence 87763
No 45
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.83 E-value=3e-21 Score=174.22 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=96.6
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCC
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKH 90 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~ 90 (231)
++.|.+. .+++||||+++ ..++.+++.|...++.+..+||. +|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 183 ~~~l~~~--~~~~LVF~~s~--~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~ 254 (459)
T 2z83_A 183 YEWITEY--AGKTVWFVASV--KMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA 254 (459)
T ss_dssp CHHHHHC--CSCEEEECSCH--HHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC
T ss_pred HHHHHhc--CCCEEEEeCCh--HHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC
Confidence 3444443 56788899998 77999999999999999999995 7888999999999999999999999999999
Q ss_pred CcEEEE--------------------ecCCCCHhHHHHHhcccCCCCC-ceeEEEEeccc
Q psy17587 91 LNLVVN--------------------YDCPNHYEDYVHRCGRTGRAGN-KGFAYTFITLE 129 (231)
Q Consensus 91 v~~VI~--------------------~d~P~~~~~y~qr~GR~gR~g~-~g~~i~~~~~~ 129 (231)
++||+ ||+|.+..+|+||+||+||.|. .|.|++|+.+.
T Consensus 255 -~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 255 -SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp -SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred -CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999 7899999999999999999997 89999999875
No 46
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.82 E-value=2.3e-20 Score=168.07 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=94.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEec-
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYD- 98 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d- 98 (231)
..++||||+++ ..++.+++.|...|+.+..+||++. .++++.|++|+.+|||||+++++|+|+|+ ++|||||
T Consensus 188 ~~~~lVF~~s~--~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~ 260 (451)
T 2jlq_A 188 QGKTVWFVPSI--KAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRR 260 (451)
T ss_dssp CSCEEEECSSH--HHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCE
T ss_pred CCCEEEEcCCH--HHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCC
Confidence 45788899998 7799999999999999999999864 57899999999999999999999999999 9999999
Q ss_pred -------------------CCCCHhHHHHHhcccCCCCC-ceeEEEEeccc
Q psy17587 99 -------------------CPNHYEDYVHRCGRTGRAGN-KGFAYTFITLE 129 (231)
Q Consensus 99 -------------------~P~~~~~y~qr~GR~gR~g~-~g~~i~~~~~~ 129 (231)
.|.+..+|+||+||+||.|. .|.|++|....
T Consensus 261 ~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 261 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 99999999999999999998 88998887543
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.81 E-value=8.9e-20 Score=172.70 Aligned_cols=123 Identities=16% Similarity=0.193 Sum_probs=109.8
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA 83 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~ 83 (231)
.|...|.+.+... ..++.+||||+++ +.++.|++.|...|+++.++||++.++++..+.+.|+.| .|+||||+++
T Consensus 444 ~K~~al~~~i~~~~~~gqpvLVft~Si--e~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 519 (922)
T 1nkt_A 444 AKYIAVVDDVAERYAKGQPVLIGTTSV--ERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAG 519 (922)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESCH--HHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCS
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCH--HHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhh
Confidence 3566777777553 4567899999998 779999999999999999999999888888888888888 6999999999
Q ss_pred cccCCCCC----------------------------------------------------cEEEEecCCCCHhHHHHHhc
Q psy17587 84 RGLDVKHL----------------------------------------------------NLVVNYDCPNHYEDYVHRCG 111 (231)
Q Consensus 84 ~Gldip~v----------------------------------------------------~~VI~~d~P~~~~~y~qr~G 111 (231)
||+||+.+ .+||+++.|.+...|.||+|
T Consensus 520 RGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~G 599 (922)
T 1nkt_A 520 RGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRG 599 (922)
T ss_dssp TTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHH
T ss_pred cCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhc
Confidence 99999975 49999999999999999999
Q ss_pred ccCCCCCceeEEEEecccch
Q psy17587 112 RTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 112 R~gR~g~~g~~i~~~~~~~~ 131 (231)
|+||.|.+|.+++|++..|.
T Consensus 600 RTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 600 RSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TSSGGGCCEEEEEEEETTSH
T ss_pred ccccCCCCeeEEEEechhHH
Confidence 99999999999999988765
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.81 E-value=7.9e-20 Score=179.36 Aligned_cols=129 Identities=17% Similarity=0.237 Sum_probs=106.6
Q ss_pred CchhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEe----cC
Q psy17587 5 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIA----TS 80 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLva----T~ 80 (231)
.|...|.++++.. +.++||||+++ ..++.+++.|... +++..+||+|. .++++|++|+.+|||| |+
T Consensus 262 ~k~~~L~~ll~~~--~~~~LVF~~t~--~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Td 331 (1054)
T 1gku_B 262 ESISTLSSILEKL--GTGGIIYARTG--EEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYG 331 (1054)
T ss_dssp CCTTTTHHHHTTS--CSCEEEEESSH--HHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC---
T ss_pred hHHHHHHHHHhhc--CCCEEEEEcCH--HHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCC
Confidence 4555666666655 46788899998 7799999999887 99999999983 7889999999999999 99
Q ss_pred ccccccCCCCC-cEEEEecCC-----------------------------------------------------------
Q psy17587 81 VAARGLDVKHL-NLVVNYDCP----------------------------------------------------------- 100 (231)
Q Consensus 81 ~~~~Gldip~v-~~VI~~d~P----------------------------------------------------------- 100 (231)
++++|+|+|+| ++||++|+|
T Consensus 332 v~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (1054)
T 1gku_B 332 TLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQA 411 (1054)
T ss_dssp ---CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSC
T ss_pred eeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999996 999999999
Q ss_pred ------------CCHhHHHHHhcccCCCCCce--eEEEEecccchHHHHHHHHHHHh
Q psy17587 101 ------------NHYEDYVHRCGRTGRAGNKG--FAYTFITLEQERHAGEIIRALEA 143 (231)
Q Consensus 101 ------------~~~~~y~qr~GR~gR~g~~g--~~i~~~~~~~~~~~~~~~~~l~~ 143 (231)
.+..+|+||+||+||.|..| .+++++...+...+..+.+.+..
T Consensus 412 ~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 412 KDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp SSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987765 47888888888888888887774
No 49
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.81 E-value=1.4e-19 Score=171.04 Aligned_cols=112 Identities=17% Similarity=0.346 Sum_probs=96.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCC------------------------------------CCeeeccCCCCHHHH
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAG------------------------------------YPCLSLHGGIDQYDR 61 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~------------------------------------~~~~~lhg~~~~~~R 61 (231)
..++.+||||+++ ..++.+++.|.... ..+.++||+|++.+|
T Consensus 250 ~~~~~~LVF~~s~--~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r 327 (715)
T 2va8_A 250 SKNGQVLVFRNSR--KMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALR 327 (715)
T ss_dssp TTTCCEEEECSSH--HHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred hcCCCEEEEECCH--HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHH
Confidence 3568889999998 77999999987542 248999999999999
Q ss_pred HHHHHHHhCCCccEEEecCccccccCCCCCcEEEE----ec-------CCCCHhHHHHHhcccCCCC--CceeEEEEecc
Q psy17587 62 DSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN----YD-------CPNHYEDYVHRCGRTGRAG--NKGFAYTFITL 128 (231)
Q Consensus 62 ~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~----~d-------~P~~~~~y~qr~GR~gR~g--~~g~~i~~~~~ 128 (231)
..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| ..|.|+.++++
T Consensus 328 ~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 328 DLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 99999999999999999999999999999999999 99 8999999999999999998 47999999987
Q ss_pred cch
Q psy17587 129 EQE 131 (231)
Q Consensus 129 ~~~ 131 (231)
.+.
T Consensus 408 ~~~ 410 (715)
T 2va8_A 408 KED 410 (715)
T ss_dssp GGG
T ss_pred chH
Confidence 653
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.81 E-value=1.4e-20 Score=179.44 Aligned_cols=110 Identities=19% Similarity=0.265 Sum_probs=101.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH-----------CCCCeeeccCCCCHHHHHHHHHHHh-----CCCccEEEecCcc
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK-----------AGYPCLSLHGGIDQYDRDSTIVDFK-----NGKVRLLIATSVA 82 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~-----------~~~~~~~lhg~~~~~~R~~~~~~F~-----~g~~~vLvaT~~~ 82 (231)
....+||||+++ ..++.+++.|.. .++.+..+||+|++++|..+++.|+ +|..+|||||+++
T Consensus 302 ~~g~iLVF~~~~--~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ia 379 (773)
T 2xau_A 302 EAGDILLFLTGE--DEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIA 379 (773)
T ss_dssp CSCEEEEECSCH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHH
T ss_pred CCCCEEEECCCH--HHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHH
Confidence 467899999998 779999999874 5788999999999999999999999 9999999999999
Q ss_pred ccccCCCCCcEEEEecC------------------CCCHhHHHHHhcccCCCCCceeEEEEecccch
Q psy17587 83 ARGLDVKHLNLVVNYDC------------------PNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE 131 (231)
Q Consensus 83 ~~Gldip~v~~VI~~d~------------------P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~ 131 (231)
++|||+|+|++||++++ |.+..+|+||+|||||. ..|.|+.|+++.+.
T Consensus 380 e~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 380 ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred HhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999877 89999999999999999 78999999976543
No 51
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-19 Score=176.92 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=103.0
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC---------------------------------------
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP--------------------------------------- 48 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~--------------------------------------- 48 (231)
..+...+... ...++||||+++ ..++.++..|...++.
T Consensus 332 ~~l~~~l~~~-~~~~~IVF~~sr--~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 408 (1010)
T 2xgj_A 332 YKIVKMIWKK-KYNPVIVFSFSK--RDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 408 (1010)
T ss_dssp HHHHHHHHHH-TCCSEEEEESSH--HHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCCCEEEEECCH--HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCC
Confidence 3344444433 244677799998 7799999988765443
Q ss_pred eeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE----ecC----CCCHhHHHHHhcccCCCCC--
Q psy17587 49 CLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN----YDC----PNHYEDYVHRCGRTGRAGN-- 118 (231)
Q Consensus 49 ~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~----~d~----P~~~~~y~qr~GR~gR~g~-- 118 (231)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+||+||.|.
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~ 488 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 488 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCS
T ss_pred eeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCC
Confidence 778999999999999999999999999999999999999999999999 999 9999999999999999996
Q ss_pred ceeEEEEeccc
Q psy17587 119 KGFAYTFITLE 129 (231)
Q Consensus 119 ~g~~i~~~~~~ 129 (231)
.|.|++++.+.
T Consensus 489 ~G~vi~l~~~~ 499 (1010)
T 2xgj_A 489 RGIVIMMIDEK 499 (1010)
T ss_dssp SEEEEEEECSC
T ss_pred ceEEEEEECCC
Confidence 59999999866
No 52
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.80 E-value=1.6e-19 Score=171.01 Aligned_cols=110 Identities=18% Similarity=0.252 Sum_probs=99.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC---------------------------------CCCeeeccCCCCHHHHHHHH
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA---------------------------------GYPCLSLHGGIDQYDRDSTI 65 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~---------------------------------~~~~~~lhg~~~~~~R~~~~ 65 (231)
.+..+||||+++ ..++.++..|... ...+.++||+|++.+|..++
T Consensus 236 ~~~~~LVF~~sr--~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 236 KKKGALIFVNMR--RKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp TTCCEEEECSCH--HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCCEEEEecCH--HHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 467888899988 7799999888642 12489999999999999999
Q ss_pred HHHhCCCccEEEecCccccccCCCCCcEEEE----ec----CCCCHhHHHHHhcccCCCC--CceeEEEEecccc
Q psy17587 66 VDFKNGKVRLLIATSVAARGLDVKHLNLVVN----YD----CPNHYEDYVHRCGRTGRAG--NKGFAYTFITLEQ 130 (231)
Q Consensus 66 ~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~----~d----~P~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~~ 130 (231)
+.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| ..|.|++++++.+
T Consensus 314 ~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 314 ENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999999999999999999 77 6899999999999999998 4799999998776
No 53
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.80 E-value=3.4e-20 Score=167.06 Aligned_cols=116 Identities=22% Similarity=0.360 Sum_probs=100.7
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG 85 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G 85 (231)
|+..|.++|.. ..+.++||||++. ..++.+++.| .+..+||++++.+|..++++|++|+++|||||+++++|
T Consensus 336 k~~~l~~~l~~-~~~~k~lvF~~~~--~~~~~l~~~l-----~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~G 407 (472)
T 2fwr_A 336 KIRKLREILER-HRKDKIIIFTRHN--ELVYRISKVF-----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEG 407 (472)
T ss_dssp HHHHHHHHHHH-TSSSCBCCBCSCH--HHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSS
T ss_pred HHHHHHHHHHh-CCCCcEEEEECCH--HHHHHHHHHh-----CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcC
Confidence 55667777776 4567888899988 7799999887 36789999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCc---eeEEEEeccc
Q psy17587 86 LDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNK---GFAYTFITLE 129 (231)
Q Consensus 86 ldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~---g~~i~~~~~~ 129 (231)
+|+|++++||++|+|+++..|+||+||+||.|+. ..++.++..+
T Consensus 408 ldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 408 IDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred cccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999854 3445566544
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.80 E-value=1.8e-19 Score=161.41 Aligned_cols=111 Identities=23% Similarity=0.192 Sum_probs=94.3
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccC
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLD 87 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gld 87 (231)
..+++.+.+. +.+++|||+++ ..++.+++.|...++.+..+||+ +|..++++|++|+++|||||+++++|+|
T Consensus 161 ~~~~~~l~~~--~~~~lVF~~~~--~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiD 232 (431)
T 2v6i_A 161 NSGYEWITEF--DGRTVWFVHSI--KQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGAN 232 (431)
T ss_dssp SSCCHHHHSC--SSCEEEECSSH--HHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCC
T ss_pred HHHHHHHHcC--CCCEEEEeCCH--HHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcc
Confidence 3444555443 45788899998 77999999999999999999997 5788999999999999999999999999
Q ss_pred CCCCcE-----------------EEEecCCCCHhHHHHHhcccCCCCC-ceeEEEEec
Q psy17587 88 VKHLNL-----------------VVNYDCPNHYEDYVHRCGRTGRAGN-KGFAYTFIT 127 (231)
Q Consensus 88 ip~v~~-----------------VI~~d~P~~~~~y~qr~GR~gR~g~-~g~~i~~~~ 127 (231)
+| +.+ ||+++.|.+..+|+||+||+||.|. .|.++++..
T Consensus 233 ip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 233 FK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp CC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECS
T ss_pred cC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcC
Confidence 99 544 6889999999999999999999985 556666653
No 55
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.80 E-value=1.9e-19 Score=169.96 Aligned_cols=110 Identities=19% Similarity=0.326 Sum_probs=99.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC------------------------------CCCeeeccCCCCHHHHHHHHHHH
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA------------------------------GYPCLSLHGGIDQYDRDSTIVDF 68 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~------------------------------~~~~~~lhg~~~~~~R~~~~~~F 68 (231)
.++++||||+++ ..++.++..|... +..+.++||+|++++|..+++.|
T Consensus 241 ~~~~~LVF~~s~--~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 241 ENGGVLVFESTR--RGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp TTCCEEEECSSH--HHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEcCCH--HHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 567888899998 7799999888642 24588999999999999999999
Q ss_pred hCCCccEEEecCccccccCCCCCcEEEE----ec---CCCCHhHHHHHhcccCCCC--CceeEEEEecccc
Q psy17587 69 KNGKVRLLIATSVAARGLDVKHLNLVVN----YD---CPNHYEDYVHRCGRTGRAG--NKGFAYTFITLEQ 130 (231)
Q Consensus 69 ~~g~~~vLvaT~~~~~Gldip~v~~VI~----~d---~P~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~~ 130 (231)
++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| ..|.|++++++.+
T Consensus 319 ~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 319 RRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999999999999999 77 7999999999999999998 4799999998776
No 56
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.80 E-value=1.4e-19 Score=164.19 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=102.5
Q ss_pred Cchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHC-CCCeeeccCCCCHHHHHHHHHHHhCC-Ccc-EEEecC
Q psy17587 5 YPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKA-GYPCLSLHGGIDQYDRDSTIVDFKNG-KVR-LLIATS 80 (231)
Q Consensus 5 ~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~-vLvaT~ 80 (231)
.|+..+.+.|.+. ..+.++||||+.. ..++.+.+.|... |+.+..+||++++.+|..++++|++| ..+ +|+||+
T Consensus 325 ~K~~~l~~~l~~~~~~~~k~lvF~~~~--~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~ 402 (500)
T 1z63_A 325 GKMIRTMEIIEEALDEGDKIAIFTQFV--DMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 402 (500)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECSCH--HHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC
T ss_pred hhHHHHHHHHHHHHccCCcEEEEEehH--HHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc
Confidence 4666777777654 4578899999987 7799999999875 99999999999999999999999988 555 799999
Q ss_pred ccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCceeE--EEEeccc
Q psy17587 81 VAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFA--YTFITLE 129 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~g~~--i~~~~~~ 129 (231)
++++|+|+|.+++||+||+||++..|.|++||++|.|+...+ +.++..+
T Consensus 403 ~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 403 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred cccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999999999999999999986544 5555554
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.80 E-value=1.8e-19 Score=178.10 Aligned_cols=114 Identities=15% Similarity=0.243 Sum_probs=104.5
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCc
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLN 92 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~ 92 (231)
.....+.+++||||+. ..++.+++.|... +..+..+||+|++.+|..++++|++|+++|||||+++++|+|+|+++
T Consensus 807 ~~l~~g~qvlvf~~~v--~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~ 884 (1151)
T 2eyq_A 807 REILRGGQVYYLYNDV--ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 884 (1151)
T ss_dssp HHHTTTCEEEEECCCS--SCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEE
T ss_pred HHHhcCCeEEEEECCH--HHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCc
Confidence 4445678899999998 6799999999876 88999999999999999999999999999999999999999999999
Q ss_pred EEEEecC-CCCHhHHHHHhcccCCCCCceeEEEEecccc
Q psy17587 93 LVVNYDC-PNHYEDYVHRCGRTGRAGNKGFAYTFITLEQ 130 (231)
Q Consensus 93 ~VI~~d~-P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~ 130 (231)
+||+++. ++++.+|+||+||+||.|+.|.|++++.+.+
T Consensus 885 ~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 885 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp EEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred EEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999998 5799999999999999999999999987653
No 58
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.80 E-value=4.6e-19 Score=166.39 Aligned_cols=101 Identities=17% Similarity=0.275 Sum_probs=92.3
Q ss_pred EEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC--CCccEEEecCccccccCCCCCcEEEEecC--
Q psy17587 24 VDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN--GKVRLLIATSVAARGLDVKHLNLVVNYDC-- 99 (231)
Q Consensus 24 iiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~vLvaT~~~~~Gldip~v~~VI~~d~-- 99 (231)
+|||+++ ..++.+++.|...++.+..+||+|++++|..+++.|++ |..+|||||+++++|+|+ ++++||++++
T Consensus 324 iIf~~s~--~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k 400 (677)
T 3rc3_A 324 CIVCFSK--NDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIK 400 (677)
T ss_dssp EEECSSH--HHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC
T ss_pred EEEEcCH--HHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccc
Confidence 4589987 67999999999999999999999999999999999999 889999999999999999 8999999999
Q ss_pred ------------CCCHhHHHHHhcccCCCCCc---eeEEEEec
Q psy17587 100 ------------PNHYEDYVHRCGRTGRAGNK---GFAYTFIT 127 (231)
Q Consensus 100 ------------P~~~~~y~qr~GR~gR~g~~---g~~i~~~~ 127 (231)
|.+..+|+||+|||||.|.. |.|+.+..
T Consensus 401 ~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 401 PSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp -----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred cccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 88999999999999999964 66665543
No 59
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.80 E-value=1.9e-19 Score=177.04 Aligned_cols=125 Identities=22% Similarity=0.295 Sum_probs=105.7
Q ss_pred chhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee-eccCCCCHHHHHHHHHHHhCCCccEEEe----cC
Q psy17587 6 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL-SLHGGIDQYDRDSTIVDFKNGKVRLLIA----TS 80 (231)
Q Consensus 6 k~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~R~~~~~~F~~g~~~vLva----T~ 80 (231)
|...|.++|... +.++||||+++ ..++.++..|...|+.+. .+|| +|.+ +++|++|+++|||| |+
T Consensus 297 k~~~L~~ll~~~--~~~~LVF~~s~--~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 297 SKEKLVELLEIF--RDGILIFAQTE--EEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp CHHHHHHHHHHH--CSSEEEEESSS--HHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred HHHHHHHHHHhc--CCCEEEEECcH--HHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 556677777764 37788899998 779999999999999998 9999 2555 99999999999999 99
Q ss_pred ccccccCCCC-CcEEEEecCCC----------------------------------------------------------
Q psy17587 81 VAARGLDVKH-LNLVVNYDCPN---------------------------------------------------------- 101 (231)
Q Consensus 81 ~~~~Gldip~-v~~VI~~d~P~---------------------------------------------------------- 101 (231)
++++|+|+|+ |++|||||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------CHhHHHHHhcccCCCCC----ceeEEEEecccchHHHHHHHHHHH
Q psy17587 102 --------------HYEDYVHRCGRTGRAGN----KGFAYTFITLEQERHAGEIIRALE 142 (231)
Q Consensus 102 --------------~~~~y~qr~GR~gR~g~----~g~~i~~~~~~~~~~~~~~~~~l~ 142 (231)
++.+|+||+|||||.|. .|.+++++ ++...+..+.+.+.
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 78899999999999653 45666665 66677777777665
No 60
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.79 E-value=3.2e-19 Score=166.43 Aligned_cols=102 Identities=23% Similarity=0.350 Sum_probs=92.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEE---
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVV--- 95 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI--- 95 (231)
...++||||+++ ..++.+++.|...++++..+||+|++++ |+++..+||||||++++|||+| +++||
T Consensus 395 ~~~~vLVFv~Tr--~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 395 RGGRHLIFCHSK--KKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSSEEEEECSCH--HHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECC
T ss_pred cCCcEEEEeCCH--HHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecC
Confidence 467889999998 7799999999999999999999999875 5566779999999999999997 99988
Q ss_pred -------Eec-----------CCCCHhHHHHHhcccCCCCCceeEEEEecccchH
Q psy17587 96 -------NYD-----------CPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQER 132 (231)
Q Consensus 96 -------~~d-----------~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~~~ 132 (231)
||| +|.+.++|+||+||+|| |+.|. +.|+++.+..
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 788 89999999999999999 88999 9999877644
No 61
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.3e-19 Score=178.31 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=97.1
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC---------------------------------------e
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP---------------------------------------C 49 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~---------------------------------------~ 49 (231)
.++..+... ...++||||+++ ..|+.++..|...++. +
T Consensus 431 ~li~~l~~~-~~~~vIVF~~sr--~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV 507 (1108)
T 3l9o_A 431 KIVKMIWKK-KYNPVIVFSFSK--RDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 507 (1108)
T ss_dssp HHHHHHHHT-TCCCEEEEESCH--HHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTE
T ss_pred HHHHHHHhc-CCCCEEEEeCcH--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCe
Confidence 344444433 356788899998 7799999987542222 7
Q ss_pred eeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecCCC--------CHhHHHHHhcccCCCC--Cc
Q psy17587 50 LSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPN--------HYEDYVHRCGRTGRAG--NK 119 (231)
Q Consensus 50 ~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~--------~~~~y~qr~GR~gR~g--~~ 119 (231)
..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.|+ ++.+|+||+|||||.| ..
T Consensus 508 ~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~ 587 (1108)
T 3l9o_A 508 GIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDR 587 (1108)
T ss_dssp EEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSS
T ss_pred eeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCc
Confidence 8999999999999999999999999999999999999999999999876643 6778999999999999 68
Q ss_pred eeEEEEecccc
Q psy17587 120 GFAYTFITLEQ 130 (231)
Q Consensus 120 g~~i~~~~~~~ 130 (231)
|.|++++.+..
T Consensus 588 G~~ill~~~~~ 598 (1108)
T 3l9o_A 588 GIVIMMIDEKM 598 (1108)
T ss_dssp EEEEEEECCCC
T ss_pred eEEEEEecCCc
Confidence 99999988763
No 62
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.78 E-value=7.6e-20 Score=174.06 Aligned_cols=122 Identities=18% Similarity=0.271 Sum_probs=101.0
Q ss_pred hhhcccc-ccCCCCeEEEEcCChhH------HHHHHHHHHHHH---CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 9 SLHGGID-QYDRDSTIVDFKNGKVR------LLVCAIVKELMK---AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 9 ~L~~~L~-~~~~~~~iiiF~~~~~~------~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
.+.+.+. ....+.+++|||+.... ..++.+++.|.. .++.+..+||+|++.+|..++++|++|+++||||
T Consensus 566 ~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVa 645 (780)
T 1gm5_A 566 EVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVS 645 (780)
T ss_dssp HHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCC
T ss_pred HHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 3444443 33456778889986411 246788888877 4789999999999999999999999999999999
Q ss_pred cCccccccCCCCCcEEEEecCCC-CHhHHHHHhcccCCCCCceeEEEEecccc
Q psy17587 79 TSVAARGLDVKHLNLVVNYDCPN-HYEDYVHRCGRTGRAGNKGFAYTFITLEQ 130 (231)
Q Consensus 79 T~~~~~Gldip~v~~VI~~d~P~-~~~~y~qr~GR~gR~g~~g~~i~~~~~~~ 130 (231)
|+++++|+|+|++++||++|+|. +...|.||+||+||.|..|.|++++.+.+
T Consensus 646 T~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~ 698 (780)
T 1gm5_A 646 TTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVG 698 (780)
T ss_dssp SSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCC
T ss_pred CCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCC
Confidence 99999999999999999999996 78899999999999999999999988433
No 63
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.78 E-value=2.7e-19 Score=162.59 Aligned_cols=106 Identities=22% Similarity=0.163 Sum_probs=95.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEec-CccccccCCCCCcEEEEe
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIAT-SVAARGLDVKHLNLVVNY 97 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT-~~~~~Gldip~v~~VI~~ 97 (231)
.++.+||||+ . ..++.+++.|...+.++..+||+|++.+|..+++.|++|+.+||||| +++++|+|+|++++||++
T Consensus 347 ~~~~~ivf~~-~--~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~ 423 (510)
T 2oca_A 347 DENAFVMFKH-V--SHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLA 423 (510)
T ss_dssp TCEEEEEESS-H--HHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEES
T ss_pred CCCeEEEEec-H--HHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEe
Confidence 3577787888 4 56888999999888899999999999999999999999999999999 999999999999999999
Q ss_pred cCCCCHhHHHHHhcccCCCCCceeEEEEec
Q psy17587 98 DCPNHYEDYVHRCGRTGRAGNKGFAYTFIT 127 (231)
Q Consensus 98 d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~ 127 (231)
++|+++..|+|++||+||.|+.+.+++++.
T Consensus 424 ~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 424 HGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999998764444443
No 64
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.78 E-value=1.5e-18 Score=162.54 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=104.9
Q ss_pred chhhhhcccccc--CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCcc---EEEecC
Q psy17587 6 PCLSLHGGIDQY--DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVR---LLIATS 80 (231)
Q Consensus 6 k~~~L~~~L~~~--~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~---vLvaT~ 80 (231)
|+..|..++... ..+.++||||+.. ..++.+...|...|+.+..+||+++..+|..++++|++|+.. +|++|+
T Consensus 400 K~~~l~~ll~~~~~~~~~k~lIFs~~~--~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 400 KMLVLDYILAMTRTTTSDKVVLVSNYT--QTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEESCH--HHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEEccH--HHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 344444444433 2478899999987 789999999999999999999999999999999999998764 899999
Q ss_pred ccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCc--eeEEEEeccc
Q psy17587 81 VAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNK--GFAYTFITLE 129 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~--g~~i~~~~~~ 129 (231)
++++|+|++.+++||+||+||++..|.|++||++|.|+. ..++.|++.+
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 999999999999999999999999999999999999975 4456666655
No 65
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.76 E-value=3.3e-18 Score=166.92 Aligned_cols=117 Identities=19% Similarity=0.209 Sum_probs=98.1
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCC---------------------------------------
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGY--------------------------------------- 47 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~--------------------------------------- 47 (231)
+..|+..|... ...++||||+++ ..|+.++..|...++
T Consensus 324 ~~~li~~l~~~-~~~~~IVF~~sr--~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 400 (997)
T 4a4z_A 324 WPEIVNYLRKR-ELLPMVVFVFSK--KRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLER 400 (997)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCH--HHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-CCCCEEEEECCH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhc
Confidence 55666666655 345777799998 779999999976555
Q ss_pred CeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecCC---------CCHhHHHHHhcccCCCC-
Q psy17587 48 PCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCP---------NHYEDYVHRCGRTGRAG- 117 (231)
Q Consensus 48 ~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P---------~~~~~y~qr~GR~gR~g- 117 (231)
.+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++. ||++++| .++.+|+||+|||||.|
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~-VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~ 479 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRT-VIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL 479 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSE-EEESCSEEEETTEEEECCHHHHHHHHGGGCCTTT
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCce-EEEeccccccCccCCCCCHHHHhHHhcccccCCC
Confidence 478999999999999999999999999999999999999999954 5544444 49999999999999998
Q ss_pred -CceeEEEEec
Q psy17587 118 -NKGFAYTFIT 127 (231)
Q Consensus 118 -~~g~~i~~~~ 127 (231)
..|.|+++..
T Consensus 480 ~~~G~vi~l~~ 490 (997)
T 4a4z_A 480 DSTGTVIVMAY 490 (997)
T ss_dssp CSSEEEEEECC
T ss_pred CcceEEEEecC
Confidence 5688888874
No 66
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.1e-18 Score=163.16 Aligned_cols=123 Identities=16% Similarity=0.233 Sum_probs=108.1
Q ss_pred CchhhhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCcc---EEEecC
Q psy17587 5 YPCLSLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVR---LLIATS 80 (231)
Q Consensus 5 ~k~~~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~---vLvaT~ 80 (231)
.|+..|.++|.... .+.++||||+.. ..++.|...|...|+++..+||+++..+|..++++|+++... +|++|.
T Consensus 556 ~K~~~L~~lL~~~~~~g~kvLIFsq~~--~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ 633 (800)
T 3mwy_W 556 GKMVLLDQLLTRLKKDGHRVLIFSQMV--RMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 633 (800)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEESCH--HHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEechH--HHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecc
Confidence 46667777776654 467999999977 789999999999999999999999999999999999986654 899999
Q ss_pred ccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCCc--eeEEEEeccc
Q psy17587 81 VAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNK--GFAYTFITLE 129 (231)
Q Consensus 81 ~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~~--g~~i~~~~~~ 129 (231)
+++.|||+|.+++||+||+||++..+.|++||++|.|+. ..++.|++.+
T Consensus 634 agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 634 AGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp HHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred cccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 999999999999999999999999999999999999975 4455666655
No 67
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.74 E-value=5.4e-18 Score=156.97 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=91.2
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCC--------CeeeccCCCCHHHHHHHHHHHhCCCcc---EEEe
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGY--------PCLSLHGGIDQYDRDSTIVDFKNGKVR---LLIA 78 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~--------~~~~lhg~~~~~~R~~~~~~F~~g~~~---vLva 78 (231)
|.+.+.......++||||+++ ..++.+++.|...+. .+..+||.++. +|..++++|++|+.+ ||||
T Consensus 429 l~~~l~~~~~~~k~lVF~~~~--~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvt 505 (590)
T 3h1t_A 429 LTDFMKRTDRFAKTIVFCVDQ--EHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTT 505 (590)
T ss_dssp HHHHHHHHCTTSEEEEEESSH--HHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEE
T ss_pred HHHHHHhcCCCccEEEEECCH--HHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEE
Confidence 444455556678899999988 779999999976432 37789999864 799999999998866 8899
Q ss_pred cCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCCC
Q psy17587 79 TSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGN 118 (231)
Q Consensus 79 T~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g~ 118 (231)
|+++++|+|+|+|++||++++|+++..|+||+||+||.+.
T Consensus 506 t~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 506 SQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp SSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999999999999999999999999999999999774
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.71 E-value=2.3e-17 Score=167.87 Aligned_cols=125 Identities=13% Similarity=0.193 Sum_probs=103.5
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC----------------------------------CCCeeeccC
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA----------------------------------GYPCLSLHG 54 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~----------------------------------~~~~~~lhg 54 (231)
.+...+.....++.+||||+++ ..|+.++..|... ...+.++||
T Consensus 1144 ~~~~~i~~~~~~~~~lVF~~sR--~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHa 1221 (1724)
T 4f92_B 1144 PVYHAITKHSPKKPVIVFVPSR--KQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHE 1221 (1724)
T ss_dssp HHHHHHHHHCSSSCEEEEESSH--HHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECT
T ss_pred hHHHHHHHhcCCCCeeeeCCCH--HHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECC
Confidence 3445556666778899999988 6688777665321 235789999
Q ss_pred CCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE----ec------CCCCHhHHHHHhcccCCCCC--ceeE
Q psy17587 55 GIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN----YD------CPNHYEDYVHRCGRTGRAGN--KGFA 122 (231)
Q Consensus 55 ~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~----~d------~P~~~~~y~qr~GR~gR~g~--~g~~ 122 (231)
+|++.+|..+++.|++|.++|||||+++++|+|+|++.+||. || .|.++.+|+||+|||||.|. .|.|
T Consensus 1222 gL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~a 1301 (1724)
T 4f92_B 1222 GLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1301 (1724)
T ss_dssp TSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEE
Confidence 999999999999999999999999999999999999999983 33 46789999999999999996 7999
Q ss_pred EEEecccchHHHH
Q psy17587 123 YTFITLEQERHAG 135 (231)
Q Consensus 123 i~~~~~~~~~~~~ 135 (231)
++++.+.+...++
T Consensus 1302 vll~~~~~~~~~~ 1314 (1724)
T 4f92_B 1302 VIMCQGSKKDFFK 1314 (1724)
T ss_dssp EEEEEGGGHHHHH
T ss_pred EEEecchHHHHHH
Confidence 9999887766443
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.68 E-value=8.5e-17 Score=163.72 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=99.3
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC-------------------------------------CCCeeecc
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA-------------------------------------GYPCLSLH 53 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~lh 53 (231)
.+.+.....+..++|||+++ ..++.+++.|... ...+.++|
T Consensus 308 ~~~v~~~~~~~~~LVF~~sR--~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 308 YEKIMEHAGKNQVLVFVHSR--KETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHTTCCSSCCEEEECSST--TTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHhcCCcEEEECCCH--HHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 34445555567788899987 5577777766421 23478999
Q ss_pred CCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEE----ecC------CCCHhHHHHHhcccCCCCC--cee
Q psy17587 54 GGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVN----YDC------PNHYEDYVHRCGRTGRAGN--KGF 121 (231)
Q Consensus 54 g~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~----~d~------P~~~~~y~qr~GR~gR~g~--~g~ 121 (231)
|||++.+|..+.+.|++|.++|||||+++++|||+|.+++||. ||+ |.++.+|.||+|||||.|. .|.
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~ 465 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 465 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccE
Confidence 9999999999999999999999999999999999999999985 554 5689999999999999984 799
Q ss_pred EEEEecccchHH
Q psy17587 122 AYTFITLEQERH 133 (231)
Q Consensus 122 ~i~~~~~~~~~~ 133 (231)
++++..+.+...
T Consensus 466 ~ii~~~~~~~~~ 477 (1724)
T 4f92_B 466 GILITSHGELQY 477 (1724)
T ss_dssp EEEEEESTTCCH
T ss_pred EEEEecchhHHH
Confidence 999988776553
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.37 E-value=2.8e-12 Score=125.30 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=87.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCC------------CCe-eeccCC----------C----------CHH-------
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAG------------YPC-LSLHGG----------I----------DQY------- 59 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~------------~~~-~~lhg~----------~----------~~~------- 59 (231)
+.+.+|||+++ ..|..+++.|...+ +++ ..+||+ + ++.
T Consensus 537 g~kamVf~~S~--~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~ 614 (1038)
T 2w00_A 537 GFNAMLAVSSV--DAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDA 614 (1038)
T ss_dssp CCEEEEEESSH--HHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHH
T ss_pred CCcEEEEECCH--HHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHH
Confidence 35678899988 77999999987643 555 456653 2 221
Q ss_pred ----------------------HHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHhcccCCCC
Q psy17587 60 ----------------------DRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAG 117 (231)
Q Consensus 60 ----------------------~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~GR~gR~g 117 (231)
+|..++++|++|+++|||+|+++.+|+|+|.+ .++++|.|.+...|+|++||++|.+
T Consensus 615 ~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~ 693 (1038)
T 2w00_A 615 AIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIY 693 (1038)
T ss_dssp HHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCC
Confidence 47889999999999999999999999999999 6789999999999999999999987
Q ss_pred Cc----eeEEEEecc
Q psy17587 118 NK----GFAYTFITL 128 (231)
Q Consensus 118 ~~----g~~i~~~~~ 128 (231)
.. |.++.|+..
T Consensus 694 ~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 694 DATKTFGNIVTFRDL 708 (1038)
T ss_dssp CTTCCSEEEEESSCC
T ss_pred CCCCCcEEEEEcccc
Confidence 53 777777753
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.29 E-value=1.1e-06 Score=80.47 Aligned_cols=74 Identities=14% Similarity=0.215 Sum_probs=47.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEE--ecCccccccCCCC----CcE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLI--ATSVAARGLDVKH----LNL 93 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLv--aT~~~~~Gldip~----v~~ 93 (231)
...++||+++. ..++.+++.|.. .. ...+|.. .+|...++.|+++. .||+ +|+.+.+|||+|+ +++
T Consensus 384 ~g~~lvff~S~--~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 384 SKSVLVFFPSY--EMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp SSEEEEEESCH--HHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred CCCEEEEeCCH--HHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 46788899988 678999888754 33 4566654 46888999999865 6776 8999999999997 889
Q ss_pred EEEecCCC
Q psy17587 94 VVNYDCPN 101 (231)
Q Consensus 94 VI~~d~P~ 101 (231)
||++++|.
T Consensus 456 Vii~~lPf 463 (540)
T 2vl7_A 456 LVLAGLPY 463 (540)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999985
No 72
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.98 E-value=2.8e-05 Score=66.49 Aligned_cols=119 Identities=6% Similarity=-0.049 Sum_probs=81.5
Q ss_pred chhhhhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 6 PCLSLHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 6 k~~~L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
|...|-.+|.... .+.+|+||++.. ...+.+..++...+++..-+.|.....+ .+ -.++...+.+.|...+-
T Consensus 110 Kf~~L~~LL~~l~~~~~kVLIfsq~t--~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~ 182 (328)
T 3hgt_A 110 KFSVLRDLINLVQEYETETAIVCRPG--RTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGIN 182 (328)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEEECST--HHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCC
T ss_pred cHHHHHHHHHHHHhCCCEEEEEECCh--hHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCC
Confidence 4344444443332 368999999977 7899999999999999999999855432 22 12456666666777777
Q ss_pred ccC-----CCCCcEEEEecCCCCHhHH-HHHhcccCCCC----CceeEEEEecccch
Q psy17587 85 GLD-----VKHLNLVVNYDCPNHYEDY-VHRCGRTGRAG----NKGFAYTFITLEQE 131 (231)
Q Consensus 85 Gld-----ip~v~~VI~~d~P~~~~~y-~qr~GR~gR~g----~~g~~i~~~~~~~~ 131 (231)
|+| +...+.||.||.-|++..= +|.+-|+.|.| +...++-+++.+-.
T Consensus 183 gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 183 FTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp TTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 776 6788999999999999885 88887777763 35667888876643
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.97 E-value=2.1e-05 Score=75.20 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=90.2
Q ss_pred chhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHH-----------------------------------------
Q psy17587 6 PCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELM----------------------------------------- 43 (231)
Q Consensus 6 k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~----------------------------------------- 43 (231)
|..++.+.+... ..++.|+|+|.+. +..+.|++.|.
T Consensus 428 K~~AIv~eI~~~~~~GqPVLVgT~SI--e~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (997)
T 2ipc_A 428 KFYAVVEEIAEKYERGQPVLVGTISI--EKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQL 505 (997)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECSSH--HHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCH--HHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccc
Confidence 445555555443 4589999999988 77999999998
Q ss_pred -----------------------------------HCCCCeeeccCCCCHHHHHHHHHHHhCC-CccEEEecCccccccC
Q psy17587 44 -----------------------------------KAGYPCLSLHGGIDQYDRDSTIVDFKNG-KVRLLIATSVAARGLD 87 (231)
Q Consensus 44 -----------------------------------~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLvaT~~~~~Gld 87 (231)
+.|++..++.+....+|- .++.+ .| .-.|-|||+.++||.|
T Consensus 506 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~he~EA-eIIAq--AG~~GaVTIATNMAGRGTD 582 (997)
T 2ipc_A 506 KDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREA-EIVAQ--AGRSKTVTIATNMAGRGTD 582 (997)
T ss_dssp SHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSHHHHH-HHHHT--TTSTTCEEEECSSTTTTSC
T ss_pred cccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccchHHHH-HHHHh--cCCCCeEEEEecccCCCcC
Confidence 567777777776543321 22222 33 3468899999999999
Q ss_pred CCCC-------------------c-------------------------------------------------------E
Q psy17587 88 VKHL-------------------N-------------------------------------------------------L 93 (231)
Q Consensus 88 ip~v-------------------~-------------------------------------------------------~ 93 (231)
|.-- . +
T Consensus 583 IkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLh 662 (997)
T 2ipc_A 583 IKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLF 662 (997)
T ss_dssp CCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred eecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeE
Confidence 8622 1 7
Q ss_pred EEEecCCCCHhHHHHHhcccCCCCCceeEEEEecccc
Q psy17587 94 VVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQ 130 (231)
Q Consensus 94 VI~~d~P~~~~~y~qr~GR~gR~g~~g~~i~~~~~~~ 130 (231)
||--..+.+..-=.|-.||+||.|.+|.+-.|++-+|
T Consensus 663 VIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 663 IIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp EEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred EEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 8888889999889999999999999999988887665
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.29 E-value=0.00079 Score=62.56 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=65.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC--ccccccCCCC--CcEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS--VAARGLDVKH--LNLVV 95 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~--~~~~Gldip~--v~~VI 95 (231)
++.++||+++. ...+.+++.|. .+... ...+++..++...+++|+ +.-.||++|. .+.+|||+|+ .+.||
T Consensus 448 ~g~~lvlF~Sy--~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~vi 521 (620)
T 4a15_A 448 KKNTIVYFPSY--SLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMII 521 (620)
T ss_dssp CSCEEEEESCH--HHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEE
T ss_pred CCCEEEEeCCH--HHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEE
Confidence 34567788877 66888888775 23333 555666778999999999 8889999975 9999999994 66888
Q ss_pred EecCCCCH-----------------------------hHHHHHhcccCCCCC-ceeEEEE
Q psy17587 96 NYDCPNHY-----------------------------EDYVHRCGRTGRAGN-KGFAYTF 125 (231)
Q Consensus 96 ~~d~P~~~-----------------------------~~y~qr~GR~gR~g~-~g~~i~~ 125 (231)
...+|... ....|-+||+=|... .|..+++
T Consensus 522 I~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 522 LAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp ESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEE
Confidence 88777531 112588899888754 4555444
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.53 E-value=0.0045 Score=59.01 Aligned_cols=80 Identities=16% Similarity=0.283 Sum_probs=65.0
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc-ccccCCC
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA-ARGLDVK 89 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~-~~Gldip 89 (231)
.....+.+++|.++++ ..+.++++.+... ++++..+||+++..+|...++.+.+|..+|+|+|... ...+++.
T Consensus 412 ~~l~~g~qvlvlaPtr--~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~ 489 (780)
T 1gm5_A 412 DNYEAGFQTAFMVPTS--ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFK 489 (780)
T ss_dssp HHHHHTSCEEEECSCH--HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCS
T ss_pred HHHHcCCeEEEEeCcH--HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhcc
Confidence 3333467888899987 7788888777543 7999999999999999999999999999999999753 3457888
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
++.+||.
T Consensus 490 ~l~lVVI 496 (780)
T 1gm5_A 490 NLGLVII 496 (780)
T ss_dssp CCCEEEE
T ss_pred CCceEEe
Confidence 8888775
No 76
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.27 E-value=0.0083 Score=52.19 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=65.3
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHH---CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc----cccC
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMK---AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA----RGLD 87 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~----~Gld 87 (231)
.....+.++||.++++ ..+.++++.+.. .++++..+||+.+..++......+..|+.+|+|+|+-.- .-++
T Consensus 59 ~~~~~~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~ 136 (414)
T 3oiy_A 59 WLARKGKKSALVFPTV--TLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLS 136 (414)
T ss_dssp HHHTTTCCEEEEESSH--HHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHT
T ss_pred HHhcCCCEEEEEECCH--HHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhc
Confidence 3334577888899987 889999999987 588999999999999999999999999999999997432 1255
Q ss_pred CCCCcEEEEe
Q psy17587 88 VKHLNLVVNY 97 (231)
Q Consensus 88 ip~v~~VI~~ 97 (231)
...+++||.-
T Consensus 137 ~~~~~~iViD 146 (414)
T 3oiy_A 137 QKRFDFVFVD 146 (414)
T ss_dssp TCCCSEEEES
T ss_pred cccccEEEEe
Confidence 5677877753
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=95.98 E-value=0.078 Score=48.24 Aligned_cols=74 Identities=9% Similarity=0.104 Sum_probs=50.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEec--CccccccCCC-----CCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIAT--SVAARGLDVK-----HLN 92 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT--~~~~~Gldip-----~v~ 92 (231)
...++||.++. ...+.+++. .+..+..=..+++. ...++.|+...-.||+|| ..+.+|||+| .++
T Consensus 393 ~g~~lvlF~Sy--~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~ 464 (551)
T 3crv_A 393 KANVLVVFPSY--EIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLIS 464 (551)
T ss_dssp SSEEEEEESCH--HHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEE
T ss_pred CCCEEEEecCH--HHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCccee
Confidence 45677788877 567777762 34444443335553 456777854344899998 6999999999 477
Q ss_pred EEEEecCCC
Q psy17587 93 LVVNYDCPN 101 (231)
Q Consensus 93 ~VI~~d~P~ 101 (231)
.||...+|.
T Consensus 465 ~viI~~lPf 473 (551)
T 3crv_A 465 DVVIVGIPY 473 (551)
T ss_dssp EEEEESCCC
T ss_pred EEEEEcCCC
Confidence 888877664
No 78
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.52 E-value=0.09 Score=41.29 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=52.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC-----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc------ccccC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA-----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA------ARGLD 87 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~Gld 87 (231)
...++||.|+++ ..++++.+.+... ++++..++|+.+..+... .+..+..+|+|+|.-. ...++
T Consensus 81 ~~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~ 155 (220)
T 1t6n_A 81 GQVSVLVMCHTR--ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLN 155 (220)
T ss_dssp TCCCEEEECSCH--HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSC
T ss_pred CCEEEEEEeCCH--HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCC
Confidence 345888899987 7788888887654 789999999998766543 3455678999999631 22356
Q ss_pred CCCCcEEEE
Q psy17587 88 VKHLNLVVN 96 (231)
Q Consensus 88 ip~v~~VI~ 96 (231)
+..+++||.
T Consensus 156 ~~~~~~lVi 164 (220)
T 1t6n_A 156 LKHIKHFIL 164 (220)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 667776664
No 79
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.09 E-value=0.058 Score=53.55 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=63.8
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-ccccccCCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-VAARGLDVKHL 91 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-~~~~Gldip~v 91 (231)
...+.+++|.|+++ ..+.++++.+.. .++.+..++|..+..++...++.+.+|+.+|+|+|. .+...+.+.++
T Consensus 649 ~~~g~~vlvlvPt~--~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l 726 (1151)
T 2eyq_A 649 VDNHKQVAVLVPTT--LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 726 (1151)
T ss_dssp HTTTCEEEEECSSH--HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSE
T ss_pred HHhCCeEEEEechH--HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccccc
Confidence 34567889899987 778888888764 367899999999999999999999999999999995 44455778888
Q ss_pred cEEEE
Q psy17587 92 NLVVN 96 (231)
Q Consensus 92 ~~VI~ 96 (231)
.+||.
T Consensus 727 ~lvIi 731 (1151)
T 2eyq_A 727 GLLIV 731 (1151)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 87774
No 80
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.89 E-value=0.034 Score=54.98 Aligned_cols=78 Identities=12% Similarity=0.139 Sum_probs=64.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHH---CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc----cccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMK---AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA----RGLDVKH 90 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~----~Gldip~ 90 (231)
..+.++||.++++ +.+.++++.+.. .++++..+||+++..+|....+.+.+|..+|+|+|+-.- .-+++.+
T Consensus 119 ~~~~~~Lil~Ptr--eLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~ 196 (1104)
T 4ddu_A 119 RKGKKSALVFPTV--TLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKR 196 (1104)
T ss_dssp TTTCCEEEEESSH--HHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSC
T ss_pred hcCCeEEEEechH--HHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccC
Confidence 4567888899988 889999999987 578999999999999999999999999999999996322 1155678
Q ss_pred CcEEEEe
Q psy17587 91 LNLVVNY 97 (231)
Q Consensus 91 v~~VI~~ 97 (231)
+++||.-
T Consensus 197 l~~lViD 203 (1104)
T 4ddu_A 197 FDFVFVD 203 (1104)
T ss_dssp CSEEEES
T ss_pred cCEEEEe
Confidence 8888763
No 81
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.37 E-value=0.21 Score=40.39 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=53.0
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----cc--
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AA-- 83 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~-- 83 (231)
.....+.++||.++++ ..+.++.+.+... ++.+..++|+.+..+....+ .+..+|+|+|+- +.
T Consensus 106 ~~~~~~~~~lil~Ptr--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~ 179 (249)
T 3ber_A 106 LETPQRLFALVLTPTR--ELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENT 179 (249)
T ss_dssp HHSCCSSCEEEECSSH--HHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHS
T ss_pred hcCCCCceEEEEeCCH--HHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcC
Confidence 3333456788899987 7788888877654 78999999998866544332 246899999963 11
Q ss_pred cccCCCCCcEEEE
Q psy17587 84 RGLDVKHLNLVVN 96 (231)
Q Consensus 84 ~Gldip~v~~VI~ 96 (231)
.++++..+++||.
T Consensus 180 ~~~~l~~~~~lVi 192 (249)
T 3ber_A 180 KGFNLRALKYLVM 192 (249)
T ss_dssp TTCCCTTCCEEEE
T ss_pred CCcCccccCEEEE
Confidence 3466777777665
No 82
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.30 E-value=0.15 Score=40.42 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=53.4
Q ss_pred ccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC-----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc----
Q psy17587 12 GGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA-----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA---- 82 (231)
Q Consensus 12 ~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~---- 82 (231)
..+.....+.++||.|+++ ..+.++.+.+... ++.+..++|+.+..++...+ ...+|+|+|+--
T Consensus 84 ~~l~~~~~~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~ 156 (230)
T 2oxc_A 84 DSLVLENLSTQILILAPTR--EIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQL 156 (230)
T ss_dssp HHCCTTSCSCCEEEECSSH--HHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHH
T ss_pred HHHHhcCCCceEEEEeCCH--HHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHH
Confidence 3333334467888899987 7789988888653 67889999999876654433 257899999732
Q ss_pred --ccccCCCCCcEEEE
Q psy17587 83 --ARGLDVKHLNLVVN 96 (231)
Q Consensus 83 --~~Gldip~v~~VI~ 96 (231)
...+++..+++||.
T Consensus 157 ~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 157 IELDYLNPGSIRLFIL 172 (230)
T ss_dssp HHTTSSCGGGCCEEEE
T ss_pred HhcCCcccccCCEEEe
Confidence 12345566666654
No 83
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.13 E-value=0.25 Score=38.08 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=50.3
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHC-----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----ccc-c
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKA-----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AAR-G 85 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~-G 85 (231)
...+.++||.|+++ ..+.++.+.+... +..+..++|+.+..+.... + .+..+|+|+|+- ... .
T Consensus 68 ~~~~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 68 KKDNIQAMVIVPTR--ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp TSCSCCEEEECSCH--HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTC
T ss_pred cCCCeeEEEEeCcH--HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCC
Confidence 33456788899987 7788888887643 6788999999886654322 2 356789999972 222 3
Q ss_pred cCCCCCcEEEE
Q psy17587 86 LDVKHLNLVVN 96 (231)
Q Consensus 86 ldip~v~~VI~ 96 (231)
+++..+++||.
T Consensus 142 ~~~~~~~~lVi 152 (206)
T 1vec_A 142 AKVDHVQMIVL 152 (206)
T ss_dssp SCCTTCCEEEE
T ss_pred cCcccCCEEEE
Confidence 45666676664
No 84
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.84 E-value=0.31 Score=41.37 Aligned_cols=79 Identities=14% Similarity=0.260 Sum_probs=56.7
Q ss_pred cccccCCCCeEEEEcCChhHHHHHHHHHHHHHC-----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc-----
Q psy17587 13 GIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA-----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA----- 82 (231)
Q Consensus 13 ~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~----- 82 (231)
.+.......++||.|+++ ..++++.+.+... ++++..++|+.+..+.... +..+..+|+|+|.-.
T Consensus 69 ~l~~~~~~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~ 143 (391)
T 1xti_A 69 QLEPVTGQVSVLVMCHTR--ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALA 143 (391)
T ss_dssp HCCCCTTCCCEEEECSCH--HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHH
T ss_pred hhcccCCCeeEEEECCCH--HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHH
Confidence 333334466888899987 7788888887654 7899999999987665433 455778999999632
Q ss_pred -ccccCCCCCcEEEE
Q psy17587 83 -ARGLDVKHLNLVVN 96 (231)
Q Consensus 83 -~~Gldip~v~~VI~ 96 (231)
...+++..+++||.
T Consensus 144 ~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 144 RNKSLNLKHIKHFIL 158 (391)
T ss_dssp HTTSSCCTTCSEEEE
T ss_pred HcCCccccccCEEEE
Confidence 23356778887775
No 85
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.59 E-value=0.2 Score=45.32 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=53.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
...+||.++.+ ..+.+..+.|...|+.+..+||+.+..++......+..|..+|+++|+
T Consensus 65 ~g~~lvi~P~~--aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLI--SLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCH--HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChH--HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 35678789987 779999999999999999999999999999999999999999999986
No 86
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=93.49 E-value=0.2 Score=46.06 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=53.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHH--hCCCccEEEecCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDF--KNGKVRLLIATSV 81 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F--~~g~~~vLvaT~~ 81 (231)
...+||.++.+ ..+.+..+.|...|+.+..++|+++..++..++..+ ..+..+|+++|+-
T Consensus 84 ~g~~lVisP~~--~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 DGFTLVICPLI--SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSEEEEECSCH--HHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CCcEEEEeCHH--HHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 46788889987 779999999998899999999999999999999888 5789999999983
No 87
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.36 E-value=0.26 Score=39.32 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=44.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----cccc-ccC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAAR-GLD 87 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~-Gld 87 (231)
..+.++||.++++ ..+.++.+.+... +..+..++|+.+... ....+..+..+|+|+|+ .+.+ .++
T Consensus 96 ~~~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~ 170 (237)
T 3bor_A 96 FKETQALVLAPTR--ELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLS 170 (237)
T ss_dssp SCSCCEEEECSSH--HHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSC
T ss_pred CCCceEEEEECcH--HHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcC
Confidence 3466888899987 7788888888654 577888888865433 33455667789999994 2333 355
Q ss_pred CCCCcEEEE
Q psy17587 88 VKHLNLVVN 96 (231)
Q Consensus 88 ip~v~~VI~ 96 (231)
+..+++||.
T Consensus 171 ~~~~~~lVi 179 (237)
T 3bor_A 171 PKWIKMFVL 179 (237)
T ss_dssp STTCCEEEE
T ss_pred cccCcEEEE
Confidence 666776664
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.99 E-value=0.52 Score=37.53 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=51.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----cc-cccCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AA-RGLDV 88 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~-~Gldi 88 (231)
.+.++||.|+++ ..+.++.+.+.. .++.+..++|+.+..+....+.. ..+|+|+|+- +. ..+++
T Consensus 101 ~~~~~lil~Pt~--~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 101 DGPICLVLAPTR--ELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp CCCSEEEECSSH--HHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCC
T ss_pred CCCEEEEEeCcH--HHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCc
Confidence 356788899987 778888776654 48899999999987766554433 4789999962 22 23567
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
.++++||.
T Consensus 175 ~~~~~lVi 182 (242)
T 3fe2_A 175 RRTTYLVL 182 (242)
T ss_dssp TTCCEEEE
T ss_pred ccccEEEE
Confidence 77777765
No 89
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.58 E-value=0.23 Score=38.91 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=46.5
Q ss_pred ccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc-----
Q psy17587 12 GGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA----- 82 (231)
Q Consensus 12 ~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~----- 82 (231)
..+.....+.++||.|+++ ..+.++.+.+... ++.+..++|+.+..+.... +. ..+|+|+|+-.
T Consensus 74 ~~l~~~~~~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~ 146 (224)
T 1qde_A 74 QRIDTSVKAPQALMLAPTR--ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNI 146 (224)
T ss_dssp HHCCTTCCSCCEEEECSSH--HHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHH
T ss_pred HHHhccCCCceEEEEECCH--HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHH
Confidence 3333334567888899987 7788888877643 6888999998775544322 22 37899999632
Q ss_pred -ccccCCCCCcEEEE
Q psy17587 83 -ARGLDVKHLNLVVN 96 (231)
Q Consensus 83 -~~Gldip~v~~VI~ 96 (231)
....++..+++||.
T Consensus 147 ~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 147 QRRRFRTDKIKMFIL 161 (224)
T ss_dssp HTTSSCCTTCCEEEE
T ss_pred HhCCcchhhCcEEEE
Confidence 23455666776664
No 90
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.35 E-value=0.65 Score=35.67 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=50.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----cc-cccCCCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AA-RGLDVKH 90 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~-~Gldip~ 90 (231)
.+.+++|.|+++ ..+.++.+.+... ++++..++|+.+.......+. ...+|+|+|+- +. ..+++..
T Consensus 71 ~~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 144 (207)
T 2gxq_A 71 RKPRALVLTPTR--ELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSR 144 (207)
T ss_dssp CCCSEEEECSSH--HHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTT
T ss_pred CCCcEEEEECCH--HHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 467788899987 7799999988765 478889999987655443332 25789999962 12 2355667
Q ss_pred CcEEEE
Q psy17587 91 LNLVVN 96 (231)
Q Consensus 91 v~~VI~ 96 (231)
+++||.
T Consensus 145 ~~~iVi 150 (207)
T 2gxq_A 145 VEVAVL 150 (207)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 776665
No 91
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=92.10 E-value=0.17 Score=35.42 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=37.3
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCC
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGI 56 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~ 56 (231)
..|.+.+....+++.+|++|.+-.+ ....+..|...|+++..+.||+
T Consensus 44 ~~l~~~~~~l~~~~~ivv~C~~G~r--S~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 44 DTIPDNLNSFNKNEIYYIVCAGGVR--SAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp GGGGGCGGGCCTTSEEEEECSSSSH--HHHHHHHHHTTTCEEEEETTHH
T ss_pred cchhhhhhhhcCCCeEEEECCCCHH--HHHHHHHHHHcCCCEEEecChH
Confidence 3455666777788999999987644 6778889999999998888885
No 92
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=91.52 E-value=0.23 Score=34.12 Aligned_cols=47 Identities=19% Similarity=0.370 Sum_probs=37.2
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
.+.+.+....+++.+|+||.+-.+ +...+..|...|+++..+.||+.
T Consensus 45 ~l~~~~~~l~~~~~ivvyC~~g~r--s~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 45 SIPDNLNYFNDNETYYIICKAGGR--SAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp GGGGCGGGSCTTSEEEEECSSSHH--HHHHHHHHHTTTCEEEEETTHHH
T ss_pred HHHHHHHhCCCCCcEEEEcCCCch--HHHHHHHHHHCCCCEEEecccHH
Confidence 445556666778999999988633 78888999999999999999863
No 93
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=91.28 E-value=1.8 Score=30.61 Aligned_cols=53 Identities=21% Similarity=0.324 Sum_probs=45.1
Q ss_pred eEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEE
Q psy17587 22 TIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLL 76 (231)
Q Consensus 22 ~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 76 (231)
-.++|++.. +....+...+...|..+..++++.....|...++.|.....++-
T Consensus 4 ifvvfssdp--eilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 4 IFVVFSSDP--EILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEEecCCH--HHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 356788877 67999999999999999999999999999999999987655443
No 94
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=91.24 E-value=0.23 Score=34.81 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=37.1
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
.|.+.+....+++.||+||.+-.+ +...+..|...|+++..+.||+.
T Consensus 44 ~l~~~~~~l~~~~~ivvyC~~G~r--s~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 44 ELREKWKILERDKKYAVICAHGNR--SAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHHGGGSCTTSCEEEECSSSHH--HHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHHhCCCCCeEEEEcCCCcH--HHHHHHHHHHcCCCEEEEcCcHH
Confidence 344555666678899999988634 78888999999999999999864
No 95
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=91.06 E-value=0.25 Score=34.09 Aligned_cols=47 Identities=17% Similarity=0.411 Sum_probs=36.9
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
.|.+.+....+++.+|+||.+-.+ +...+..|...|+++..+.||+.
T Consensus 45 ~l~~~~~~l~~~~~iv~yC~~g~r--s~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 45 TIPDNLNSFNKNEIYYIVCAGGVR--SAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp GGGGCGGGCCTTSEEEEECSSSSH--HHHHHHHHHTTTCEEEEETTHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCChH--HHHHHHHHHHCCCCeEEeCCCHH
Confidence 344555666678899999988644 78888999999999999999853
No 96
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.99 E-value=0.6 Score=36.65 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=46.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH---CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc------cccccCCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK---AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV------AARGLDVK 89 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~------~~~Gldip 89 (231)
.+.++||.++++ ..+.++.+.+.. .++.+..++|+.+..++... +. ...+|+|+|+- ....+++.
T Consensus 93 ~~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~ 166 (228)
T 3iuy_A 93 NGPGMLVLTPTR--ELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLR 166 (228)
T ss_dssp CCCSEEEECSSH--HHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCT
T ss_pred CCCcEEEEeCCH--HHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcc
Confidence 467788899987 779999988876 37889999998775544332 23 34789999962 22345566
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
++++||.
T Consensus 167 ~~~~lVi 173 (228)
T 3iuy_A 167 SITYLVI 173 (228)
T ss_dssp TCCEEEE
T ss_pred cceEEEE
Confidence 7776664
No 97
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=90.00 E-value=1.3 Score=37.62 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=51.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----cc-cccCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AA-RGLDV 88 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~-~Gldi 88 (231)
.+.++||.|+++ ..++++.+.+... ++.+..++|+....+.... ..+..+|+|+|.- +. ...++
T Consensus 88 ~~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~ 161 (400)
T 1s2m_A 88 NKIQALIMVPTR--ELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADL 161 (400)
T ss_dssp CSCCEEEECSSH--HHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCC
T ss_pred CCccEEEEcCCH--HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccc
Confidence 456788899987 7788888887643 6889999999876543322 2467899999952 22 33567
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
.++++||.
T Consensus 162 ~~~~~vIi 169 (400)
T 1s2m_A 162 SDCSLFIM 169 (400)
T ss_dssp TTCCEEEE
T ss_pred ccCCEEEE
Confidence 77887775
No 98
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=89.98 E-value=0.42 Score=32.35 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=34.3
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
+.+.+....+ +.+|++|.+-.+ ....+..|...|+++..+.||+.
T Consensus 44 l~~~~~~l~~-~~ivvyC~~g~r--s~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 44 IQKGEHGLPR-RPLLLVCEKGLL--SQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp HTTTCCCCCS-SCEEEECSSSHH--HHHHHHHHHHHTCCEEEETTGGG
T ss_pred HHHHHHhCCC-CCEEEEcCCCCh--HHHHHHHHHHcCCcEEEEcccHH
Confidence 3444555556 889999988633 77888889999999888999874
No 99
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=89.00 E-value=2.1 Score=36.40 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=54.1
Q ss_pred ccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----cc
Q psy17587 12 GGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VA 82 (231)
Q Consensus 12 ~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~ 82 (231)
..+.....+.++||.|+++ ..+.++.+.+... ++.+..++|+.+..+....+. ...+|+|+|+ .+
T Consensus 97 ~~l~~~~~~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l 170 (410)
T 2j0s_A 97 QCLDIQVRETQALILAPTR--ELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMI 170 (410)
T ss_dssp HTCCTTSCSCCEEEECSSH--HHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHH
T ss_pred HHHhhccCCceEEEEcCcH--HHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHH
Confidence 3333334567888899987 7789888888653 578889999988766544332 2458999995 23
Q ss_pred cc-ccCCCCCcEEEE
Q psy17587 83 AR-GLDVKHLNLVVN 96 (231)
Q Consensus 83 ~~-Gldip~v~~VI~ 96 (231)
.+ .+++..+++||.
T Consensus 171 ~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 171 RRRSLRTRAIKMLVL 185 (410)
T ss_dssp HTTSSCCTTCCEEEE
T ss_pred HhCCccHhheeEEEE
Confidence 33 356667787775
No 100
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=88.93 E-value=0.35 Score=37.88 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=48.7
Q ss_pred ccccCCCCeEEEEcCChhHHHHHHHHHHHHHC--------CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc----
Q psy17587 14 IDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA--------GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV---- 81 (231)
Q Consensus 14 L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~---- 81 (231)
+.....+.++||.|+++ ..+.++.+.+... ++.+..++|+.+..+... .+ ....+|+|+|+-
T Consensus 66 l~~~~~~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~ 139 (219)
T 1q0u_A 66 IKPERAEVQAVITAPTR--ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRIND 139 (219)
T ss_dssp CCTTSCSCCEEEECSSH--HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHH
T ss_pred HHhCcCCceEEEEcCcH--HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHH
Confidence 33333467888899987 7788888877543 678889999875443211 11 246789999952
Q ss_pred -ccc-ccCCCCCcEEEE
Q psy17587 82 -AAR-GLDVKHLNLVVN 96 (231)
Q Consensus 82 -~~~-Gldip~v~~VI~ 96 (231)
+.. .+++..+++||.
T Consensus 140 ~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 140 FIREQALDVHTAHILVV 156 (219)
T ss_dssp HHHTTCCCGGGCCEEEE
T ss_pred HHHcCCCCcCcceEEEE
Confidence 222 345566666554
No 101
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=88.65 E-value=1.3 Score=37.40 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=54.5
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc----
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA---- 82 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~---- 82 (231)
+..+.....+.++||.|+++ ..+.++.+.+.. .++.+..++|+.+..+....+. ..+|+|+|.-.
T Consensus 80 ~~~l~~~~~~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~ 152 (394)
T 1fuu_A 80 LQRIDTSVKAPQALMLAPTR--ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDN 152 (394)
T ss_dssp HHHCCTTCCSCCEEEECSSH--HHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHH
T ss_pred HHHhhccCCCCCEEEEcCCH--HHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHH
Confidence 33344444567888899987 778888887764 3688999999998776655444 46799999532
Q ss_pred --ccccCCCCCcEEEE
Q psy17587 83 --ARGLDVKHLNLVVN 96 (231)
Q Consensus 83 --~~Gldip~v~~VI~ 96 (231)
...+++..+++||.
T Consensus 153 ~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 153 IQRRRFRTDKIKMFIL 168 (394)
T ss_dssp HHTTSSCCTTCCEEEE
T ss_pred HHhCCcchhhCcEEEE
Confidence 22345667777765
No 102
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=88.03 E-value=0.31 Score=34.94 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=35.3
Q ss_pred hhhccccccCCC-CeEEEEc-CChhHHHHHHHHHHHHHCCCCeeeccCCCCH
Q psy17587 9 SLHGGIDQYDRD-STIVDFK-NGKVRLLVCAIVKELMKAGYPCLSLHGGIDQ 58 (231)
Q Consensus 9 ~L~~~L~~~~~~-~~iiiF~-~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~ 58 (231)
.+...+....++ +.||++| .+-.+ +...+..|...|+++..+.||+..
T Consensus 77 ~~~~~~~~~~~~~~~ivvyC~~~G~r--s~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 77 DIYLQAAELALNYDNIVIYCARGGMR--SGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSSSHH--HHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCChH--HHHHHHHHHHcCCceEEEeCcHHH
Confidence 344444445566 8999999 46533 778888999999999999999753
No 103
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=87.88 E-value=2.1 Score=34.10 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=49.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc------ccccCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA------ARGLDVK 89 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~Gldip 89 (231)
+.++||.|+++ +.+.++.+.+... ++.+..++|+.+..+....+ ....+|+|+|+-- ...+++.
T Consensus 100 ~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 173 (253)
T 1wrb_A 100 YPKCLILAPTR--ELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLE 173 (253)
T ss_dssp CCSEEEECSSH--HHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCT
T ss_pred CceEEEEECCH--HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChh
Confidence 35788899987 7788888877643 57888899998765543322 3467899999732 2235677
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
.+++||.
T Consensus 174 ~~~~lVi 180 (253)
T 1wrb_A 174 FCKYIVL 180 (253)
T ss_dssp TCCEEEE
T ss_pred hCCEEEE
Confidence 7777765
No 104
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=87.77 E-value=3 Score=33.64 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=50.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccc--cccC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAA--RGLD 87 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~--~Gld 87 (231)
.+.++||.++++ ..+.++.+.+.. .+..+..++|+.+....... +..+ .+|+|+|+ .+. .+++
T Consensus 125 ~~~~~lil~Pt~--~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~ 198 (262)
T 3ly5_A 125 NGTGVLILSPTR--ELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFM 198 (262)
T ss_dssp GCCCEEEECSSH--HHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCC
T ss_pred CCceEEEEeCCH--HHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcc
Confidence 356788889987 778888888865 36778899999876654433 3333 89999995 222 2466
Q ss_pred CCCCcEEEE
Q psy17587 88 VKHLNLVVN 96 (231)
Q Consensus 88 ip~v~~VI~ 96 (231)
+.++.+||.
T Consensus 199 ~~~l~~lVi 207 (262)
T 3ly5_A 199 YKNLQCLVI 207 (262)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 777777665
No 105
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=87.72 E-value=1.1 Score=35.35 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc-----cc--ccC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA-----AR--GLD 87 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~-----~~--Gld 87 (231)
.+.++||.|+++ ..+.++.+.+... ++.+..++|+.+..+....+ +..+|+|+|.-. .+ .++
T Consensus 96 ~~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~ 168 (236)
T 2pl3_A 96 DGLGVLIISPTR--ELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFH 168 (236)
T ss_dssp GCCCEEEECSSH--HHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCC
T ss_pred CCceEEEEeCCH--HHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcc
Confidence 356788899987 7788888888654 47899999998755443332 467899999631 11 245
Q ss_pred CCCCcEEEE
Q psy17587 88 VKHLNLVVN 96 (231)
Q Consensus 88 ip~v~~VI~ 96 (231)
+.++++||.
T Consensus 169 ~~~~~~lVi 177 (236)
T 2pl3_A 169 ATDLQMLVL 177 (236)
T ss_dssp CTTCCEEEE
T ss_pred cccccEEEE
Confidence 556666654
No 106
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=87.20 E-value=1.2 Score=38.33 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=52.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC-CC---CeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc------cccCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA-GY---PCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA------RGLDV 88 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~------~Gldi 88 (231)
.+.++||.|+++ ..++++.+.+... +. .+..+||+.+..++..... ..+|+|+|.-.- ..+..
T Consensus 51 ~~~~~liv~P~~--~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~ 123 (494)
T 1wp9_A 51 YGGKVLMLAPTK--PLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISL 123 (494)
T ss_dssp SCSCEEEECSSH--HHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCT
T ss_pred CCCeEEEEECCH--HHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcch
Confidence 467888899987 6788888888765 55 8999999999887655443 468999996322 23566
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
..+++||.
T Consensus 124 ~~~~~vIi 131 (494)
T 1wp9_A 124 EDVSLIVF 131 (494)
T ss_dssp TSCSEEEE
T ss_pred hhceEEEE
Confidence 77777775
No 107
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=86.89 E-value=0.76 Score=38.20 Aligned_cols=75 Identities=11% Similarity=0.032 Sum_probs=49.5
Q ss_pred cccccCCCCeEEEEcCChhHHHHHHHHHHHHHC-----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc----
Q psy17587 13 GIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA-----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA---- 83 (231)
Q Consensus 13 ~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~---- 83 (231)
.+.......++||.++++ +.+.++++.+... ++.+..++|+.+...+. ....+|+|+|+---
T Consensus 155 ~l~~~~~~~~~lil~Ptr--eLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l 225 (300)
T 3fmo_B 155 QVEPANKYPQCLCLSPTY--ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWC 225 (300)
T ss_dssp HCCTTSCSCCEEEECSSH--HHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHH
T ss_pred hhhccCCCceEEEEcCcH--HHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHH
Confidence 333333445788899987 7788888777643 56777888876532211 35678999997431
Q ss_pred ---cccCCCCCcEEEE
Q psy17587 84 ---RGLDVKHLNLVVN 96 (231)
Q Consensus 84 ---~Gldip~v~~VI~ 96 (231)
..+++..+.++|.
T Consensus 226 ~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 226 SKLKFIDPKKIKVFVL 241 (300)
T ss_dssp TTTCCCCGGGCSEEEE
T ss_pred HhcCCCChhhceEEEE
Confidence 3567778887775
No 108
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.63 E-value=3.3 Score=35.21 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=50.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----cc-cccCCCC
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AA-RGLDVKH 90 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~-~Gldip~ 90 (231)
.++||.++++ ..+.++++.+.. .++.+..++|+.+..+.... + ....+|+|+|+- +. ..+++..
T Consensus 102 ~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (417)
T 2i4i_A 102 PISLVLAPTR--ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---L-ERGCHLLVATPGRLVDMMERGKIGLDF 175 (417)
T ss_dssp CSEEEECSSH--HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH---H-TTCCSEEEECHHHHHHHHHTTSBCCTT
T ss_pred ccEEEECCcH--HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH---h-hCCCCEEEEChHHHHHHHHcCCcChhh
Confidence 5688899987 778888888764 36889999999887654433 2 235789999972 22 2356777
Q ss_pred CcEEEE
Q psy17587 91 LNLVVN 96 (231)
Q Consensus 91 v~~VI~ 96 (231)
+++||.
T Consensus 176 ~~~iVi 181 (417)
T 2i4i_A 176 CKYLVL 181 (417)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 787775
No 109
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=85.97 E-value=0.96 Score=40.21 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=46.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc-----cc-c-CC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA-----RG-L-DV 88 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~-----~G-l-di 88 (231)
+.++||.|+++ ..+.++.+.+... ++.+..+||+.+..++...+. ...+|+|+|+-.- .+ + ++
T Consensus 55 ~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~ 128 (556)
T 4a2p_A 55 KAKVVFLATKV--PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSL 128 (556)
T ss_dssp CCCEEEECSSH--HHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCS
T ss_pred CCeEEEEeCCH--HHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccc
Confidence 67788899987 6788888877654 899999999987665433222 1378999996322 22 3 57
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
..+++||.
T Consensus 129 ~~~~~vVi 136 (556)
T 4a2p_A 129 SIFTLMIF 136 (556)
T ss_dssp TTCSEEEE
T ss_pred ccCCEEEE
Confidence 77887775
No 110
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=85.86 E-value=0.66 Score=41.16 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=49.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc-----ccc-c-CC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA-----ARG-L-DV 88 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~-----~~G-l-di 88 (231)
+.++||.|+++ ..+.++.+.+... ++.+..+||+.+...+...+. +..+|+|+|+-. ..+ + ++
T Consensus 52 ~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~ 125 (555)
T 3tbk_A 52 KGKVVFFANQI--PVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSL 125 (555)
T ss_dssp CCCEEEECSSH--HHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCG
T ss_pred CCEEEEEeCCH--HHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccc
Confidence 67788899987 6688877777654 899999999987655432222 147899999632 222 3 56
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
..+++||.
T Consensus 126 ~~~~~vVi 133 (555)
T 3tbk_A 126 SVFTLMIF 133 (555)
T ss_dssp GGCSEEEE
T ss_pred ccCCEEEE
Confidence 67777775
No 111
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=85.80 E-value=0.41 Score=34.29 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=35.7
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
.|...+....+++.||++|.+-.+..+...+..|...|+++..+.||+.
T Consensus 60 ~l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 60 DLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 3444555666788999999875221157788888888999889999864
No 112
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=85.01 E-value=3 Score=35.35 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=55.0
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV----- 81 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~----- 81 (231)
+..+.....+.+++|.++++ ..+.++.+.+... +..+..++|+.+.... ......+..+|+|+|+-
T Consensus 99 ~~~~~~~~~~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~ 173 (414)
T 3eiq_A 99 LQQIELDLKATQALVLAPTR--ELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDM 173 (414)
T ss_dssp HHHCCTTSCSCCEEEECSSH--HHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHH
T ss_pred HHHHhhcCCceeEEEEeChH--HHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHH
Confidence 33343333567888899987 7788888887653 6788888888765443 45566678899999952
Q ss_pred cc-cccCCCCCcEEEE
Q psy17587 82 AA-RGLDVKHLNLVVN 96 (231)
Q Consensus 82 ~~-~Gldip~v~~VI~ 96 (231)
+. ..+++..+++||.
T Consensus 174 l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 174 LNRRYLSPKYIKMFVL 189 (414)
T ss_dssp HHHTSSCSTTCCEEEE
T ss_pred HHcCCcccccCcEEEE
Confidence 22 2355666777765
No 113
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=84.94 E-value=0.63 Score=32.28 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=34.6
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
+.+.+....+++.+|++|.+-.+ ....+..|...|++ +..+.||+.
T Consensus 48 l~~~~~~l~~~~~ivvyc~~g~r--s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 48 LGAFMRDNDFDTPVMVMCYHGNS--SKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHHSCTTSCEEEECSSSSH--HHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHhcCCCCCEEEEcCCCch--HHHHHHHHHHcCCceEEEecCCHH
Confidence 33344445678899999988633 78888889888995 888999864
No 114
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=84.93 E-value=0.6 Score=37.13 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=47.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----ccc---cc
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AAR---GL 86 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~---Gl 86 (231)
.+.++||.++++ ..+.++.+.+... ++.+..++|+..... .......+..+|+|+|+- +.. .+
T Consensus 97 ~~~~~lil~Pt~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 171 (245)
T 3dkp_A 97 KGFRALIISPTR--ELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGI 171 (245)
T ss_dssp SSCCEEEECSSH--HHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSC
T ss_pred CCceEEEEeCCH--HHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCc
Confidence 456788899987 7789998888754 677777776532211 111223567789999952 112 46
Q ss_pred CCCCCcEEEE
Q psy17587 87 DVKHLNLVVN 96 (231)
Q Consensus 87 dip~v~~VI~ 96 (231)
++.++++||.
T Consensus 172 ~~~~~~~lVi 181 (245)
T 3dkp_A 172 DLASVEWLVV 181 (245)
T ss_dssp CCTTCCEEEE
T ss_pred ccccCcEEEE
Confidence 7777777765
No 115
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=84.62 E-value=1.4 Score=41.68 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=46.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----cccc-c-CC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AARG-L-DV 88 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~G-l-di 88 (231)
+.++||.|+++ ..+.++.+.+... ++++..+||+.+...+...+. +..+|+|+|+- +..+ + .+
T Consensus 296 ~~~~Lvl~Pt~--~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~ 369 (797)
T 4a2q_A 296 KAKVVFLATKV--PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSL 369 (797)
T ss_dssp CCCEEEECSSH--HHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCG
T ss_pred CCeEEEEeCCH--HHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccc
Confidence 67888899987 6788888777654 899999999987665433222 25789999953 1222 3 56
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
.++++||.
T Consensus 370 ~~~~~iVi 377 (797)
T 4a2q_A 370 SIFTLMIF 377 (797)
T ss_dssp GGCSEEEE
T ss_pred ccCCEEEE
Confidence 67787775
No 116
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=83.71 E-value=1.2 Score=30.82 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=31.8
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
...+++.||+||.+-. .+...+..|...|++ +..+.||+.
T Consensus 48 ~l~~~~~ivvyc~~g~--rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDE--QTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HSCTTSCEEEECSSHH--HHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred cCCCCCeEEEEECCCC--hHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4456788999999863 378888999999995 888999864
No 117
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=83.08 E-value=1.5 Score=43.16 Aligned_cols=74 Identities=16% Similarity=0.286 Sum_probs=54.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHC----CC----CeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc-ccccC-C
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKA----GY----PCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA-ARGLD-V 88 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~----~~----~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~-~~Gld-i 88 (231)
.+.++||.++++ ..+.++++.+... ++ .+..+||+.+..++....+.+++ .+|+|+|+-. ..-+. +
T Consensus 98 ~~~~~lil~Ptr--eLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L 173 (1054)
T 1gku_B 98 KGKRCYVIFPTS--LLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYREL 173 (1054)
T ss_dssp TSCCEEEEESCH--HHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTS
T ss_pred cCCeEEEEeccH--HHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHh
Confidence 457788899987 7788888887643 56 88999999999888877777777 8999999721 11111 4
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
..+++||.
T Consensus 174 ~~l~~lVi 181 (1054)
T 1gku_B 174 GHFDFIFV 181 (1054)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 46666664
No 118
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=81.89 E-value=2.7 Score=36.62 Aligned_cols=71 Identities=20% Similarity=0.150 Sum_probs=51.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----ccc-ccCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AAR-GLDVK 89 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~-Gldip 89 (231)
+.++||.|+++ +.+.++.+.+.+. ++.+..++|+.+..++...+ ....+|+|+|+- +.+ .+++.
T Consensus 129 ~~~~lil~Ptr--eLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 129 RPQVVIVSPTR--ELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCSEEEECSSH--HHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred CccEEEEecCH--HHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccc
Confidence 56888899987 7899998887653 57888999999876544332 246899999962 223 35677
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
.++++|.
T Consensus 203 ~~~~lVl 209 (434)
T 2db3_A 203 DTRFVVL 209 (434)
T ss_dssp TCCEEEE
T ss_pred cCCeEEE
Confidence 8887775
No 119
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=80.86 E-value=1.2 Score=32.04 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=31.6
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
...+++.||+||.+-.+ +...+..|...|++ +..+.||+.
T Consensus 78 ~l~~~~~ivvyC~~G~r--s~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 78 HFGQSDNIIVGCQSGGR--SIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TCCTTSSEEEEESSCSH--HHHHHHHHHHHHCCSEEEEECCHH
T ss_pred hCCCCCeEEEECCCCcH--HHHHHHHHHHcCCCCeEEeCCcHH
Confidence 34567899999988644 77888888888985 888999974
No 120
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=80.75 E-value=1.7 Score=28.52 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=28.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.+|++|.+-. .+...+..|...|++ +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~--rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGR--QSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSH--HHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCc--hHHHHHHHHHHcCCCCEEec-cCHH
Confidence 56789999999863 478888899999986 5555 7754
No 121
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=80.50 E-value=2.3 Score=40.68 Aligned_cols=55 Identities=7% Similarity=-0.061 Sum_probs=40.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHH----HCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELM----KAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
.+..++|.|+++ ..+.+.++.+. ..|+++.++.|+++..+|.... .++|+|+|+-
T Consensus 114 ~g~~vlVltPTr--eLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 114 TGKGVHVVTVND--YLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TSSCCEEEESSH--HHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred cCCcEEEEcCCH--HHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 355677788876 66776666553 4589999999999987665443 3789999973
No 122
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=79.74 E-value=1.4 Score=32.35 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=33.3
Q ss_pred ccccCCCCeEEEEcCCh--hHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 14 IDQYDRDSTIVDFKNGK--VRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 14 L~~~~~~~~iiiF~~~~--~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
+....+++.||+||.+- .+ +...+..|...|+++..+.||+.
T Consensus 66 ~~~l~~~~~ivvyC~~g~~~r--s~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 66 TKRLSKEKVIITYCWGPACNG--ATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTTCCTTSEEEEECSCTTCCH--HHHHHHHHHHTTCEEEEEESHHH
T ss_pred HhhCCCCCeEEEEECCCCccH--HHHHHHHHHHCCCeEEEeCCcHH
Confidence 34455688999999875 34 77888899999999999999864
No 123
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=79.10 E-value=3.2 Score=39.67 Aligned_cols=69 Identities=7% Similarity=0.030 Sum_probs=48.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHH----HCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-c------------
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELM----KAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-A------------ 82 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-~------------ 82 (231)
+..++|.|+++ ..+.+.++.+. ..|+++.++.|+++.++|.... ..+|+++|+- +
T Consensus 124 g~~vlVltptr--eLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~ 195 (844)
T 1tf5_A 124 GKGVHVVTVNE--YLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLY 195 (844)
T ss_dssp SSCEEEEESSH--HHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcc
Confidence 55777788876 67777666653 4589999999999988776543 3689999962 1
Q ss_pred ccccCCCCCcEEEE
Q psy17587 83 ARGLDVKHLNLVVN 96 (231)
Q Consensus 83 ~~Gldip~v~~VI~ 96 (231)
...+++..+.++|.
T Consensus 196 ~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 196 KEQMVQRPLHFAVI 209 (844)
T ss_dssp GGGCCCCCCCEEEE
T ss_pred hhhhcccCCCEEEE
Confidence 12356667776664
No 124
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=77.63 E-value=2 Score=30.98 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=31.3
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
..+++.|||||.+-.+ +...+..|...|+. +..+.||+.
T Consensus 83 ~~~~~~ivvyC~~G~r--s~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 83 FQEDKKFVFYCAGGLR--SALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GGSSSEEEEECSSSHH--HHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCCeEEEECCCChH--HHHHHHHHHHcCCCCeEEecCCHH
Confidence 3567899999998633 77788889999996 889999864
No 125
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=77.48 E-value=3 Score=30.43 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=31.6
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
...+++.||+||.+- ..+...+..|...|+. +..+.||+.
T Consensus 52 ~l~~~~~ivvyC~~g--~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 52 SLEKSRDIYVYGAGD--EQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TSCTTSEEEEECSSH--HHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred cCCCCCeEEEEECCC--hHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 345678899999976 3477888999999985 888999854
No 126
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=76.96 E-value=3.2 Score=28.75 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=31.2
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
..+++.||++|.+-.+ +...+..|...|+....+.||+.
T Consensus 53 ~~~~~~ivvyC~~G~r--s~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRR--ALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHH--HHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCch--HHHHHHHHHHCCCCEEEecCCHH
Confidence 4567889999988633 77888899999987688889964
No 127
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=76.62 E-value=1.7 Score=31.59 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=32.0
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
....+++.|||||.+-.+ ....+..|...|+ ++..+.||+.
T Consensus 77 ~~l~~~~~ivvyC~~G~r--S~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 77 SGLDPEKPVVVFCKTAAR--AALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp HCCCTTSCEEEECCSSSC--HHHHHHHHHHHTCSCEEEESSCHH
T ss_pred ccCCCCCeEEEEcCCCcH--HHHHHHHHHHcCCcceEEEcCcHH
Confidence 344567899999988533 6778888888999 5889999964
No 128
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.87 E-value=9.6 Score=31.38 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=50.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc------ccccCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA------ARGLDV 88 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~------~~Gldi 88 (231)
.+.+++|.|+++ ..++++.+.+.. .++.+..++|+.+..+....+. ..+|+|+|.-. ...+++
T Consensus 73 ~~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~ 145 (367)
T 1hv8_A 73 NGIEAIILTPTR--ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNL 145 (367)
T ss_dssp SSCCEEEECSCH--HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCT
T ss_pred CCCcEEEEcCCH--HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccc
Confidence 467888899987 778888888765 3678899999988665544332 57899999632 123556
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
..+++||.
T Consensus 146 ~~~~~iIi 153 (367)
T 1hv8_A 146 KNVKYFIL 153 (367)
T ss_dssp TSCCEEEE
T ss_pred ccCCEEEE
Confidence 77777775
No 129
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=75.86 E-value=5.3 Score=32.61 Aligned_cols=70 Identities=10% Similarity=0.162 Sum_probs=49.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc-----c-cccCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA-----A-RGLDVK 89 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~-----~-~Gldip 89 (231)
+.+++|.|+++ ..++++.+.+... +..+..+||+.+..+.... +. ..+|+|+|.-. . ..+++.
T Consensus 56 ~~~~liv~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~ 128 (337)
T 2z0m_A 56 GMKSLVVTPTR--ELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLS 128 (337)
T ss_dssp TCCEEEECSSH--HHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGG
T ss_pred cCCEEEEeCCH--HHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchh
Confidence 56788899987 7788888888743 5789999999987654433 32 37899999632 2 234566
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
.+++||.
T Consensus 129 ~~~~iVi 135 (337)
T 2z0m_A 129 SFEIVII 135 (337)
T ss_dssp GCSEEEE
T ss_pred hCcEEEE
Confidence 7777665
No 130
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=75.84 E-value=2.3 Score=41.13 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=45.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc-----ccc-c-CC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA-----ARG-L-DV 88 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~-----~~G-l-di 88 (231)
+.++||.|+++ ..+.++.+.+... ++++..+||+.+...+...+. +..+|+|+|+-. ..+ + .+
T Consensus 296 ~~~vLvl~Pt~--~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l 369 (936)
T 4a2w_A 296 KAKVVFLATKV--PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSL 369 (936)
T ss_dssp CCCEEEECSSH--HHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCG
T ss_pred CCeEEEEeCCH--HHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccc
Confidence 67788899987 6788887777654 899999999987655432222 146899999532 222 3 45
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
.++++||.
T Consensus 370 ~~~~liVi 377 (936)
T 4a2w_A 370 SIFTLMIF 377 (936)
T ss_dssp GGCSEEEE
T ss_pred cCCCEEEE
Confidence 66777775
No 131
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=75.22 E-value=3.1 Score=30.50 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
.+++.|||||.+-.+ ....+..|...|+ ++..+.||+.
T Consensus 78 ~~~~~ivvyC~~G~r--S~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNR--SIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSST--HHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChh--HHHHHHHHHHcCCcceEEEcCChh
Confidence 457889999987533 6778888999999 4889999984
No 132
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=74.87 E-value=2.8 Score=30.20 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.||++|.+-.+ +...+..|...|+. +..+.||+.
T Consensus 89 ~~~~~ivvyC~~G~r--s~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKR--GGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHH--HHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCch--HHHHHHHHHHcCCCCeEEeCCcHH
Confidence 457899999998633 77888899999995 888999864
No 133
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=74.77 E-value=5.8 Score=33.12 Aligned_cols=76 Identities=7% Similarity=0.091 Sum_probs=49.9
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHH----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc----
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMK----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA---- 82 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~---- 82 (231)
+..+.....+.++||.|+++ ..+.++++.+.. .++.+..++++..... .....+|+|+|.-.
T Consensus 66 ~~~~~~~~~~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~ 135 (395)
T 3pey_A 66 LTRVNPEDASPQAICLAPSR--ELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDL 135 (395)
T ss_dssp HHHCCTTCCSCCEEEECSSH--HHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHH
T ss_pred HHHhccCCCCccEEEECCCH--HHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHH
Confidence 33344444567888899987 778888888875 3566777777643221 23367899999632
Q ss_pred --ccccCCCCCcEEEE
Q psy17587 83 --ARGLDVKHLNLVVN 96 (231)
Q Consensus 83 --~~Gldip~v~~VI~ 96 (231)
...+++..+++||.
T Consensus 136 ~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 136 MRRKLMQLQKIKIFVL 151 (395)
T ss_dssp HHTTCBCCTTCCEEEE
T ss_pred HHcCCcccccCCEEEE
Confidence 33456777887775
No 134
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=74.72 E-value=2.8 Score=38.64 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=48.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----cccc-c-CCC
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AARG-L-DVK 89 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~G-l-dip 89 (231)
.++||.++++ ..+.+..+.+... ++.+..++|+.+...+...+. ...+|+|+|+- +..+ + ++.
T Consensus 62 ~~~lvl~Pt~--~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~ 135 (696)
T 2ykg_A 62 GKVVFFANQI--PVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLS 135 (696)
T ss_dssp CCEEEECSSH--HHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGG
T ss_pred CeEEEEECCH--HHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccc
Confidence 6788889987 6688888777654 799999999986543322221 24799999963 2222 3 566
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
++++||.
T Consensus 136 ~~~~vVi 142 (696)
T 2ykg_A 136 IFTLMIF 142 (696)
T ss_dssp GCSEEEE
T ss_pred cccEEEE
Confidence 7787775
No 135
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=74.44 E-value=5.2 Score=38.54 Aligned_cols=53 Identities=8% Similarity=-0.012 Sum_probs=39.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHH----HHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKEL----MKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+..++|.|+++ ..+.+.++.+ ...|+++.++.|++++.+|.... ..+|+++|+
T Consensus 152 g~~v~VvTpTr--eLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 152 GNGVHIVTVND--YLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TSCEEEEESSH--HHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred CCCeEEEeCCH--HHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 45677788876 6666666554 34599999999999988776554 268999996
No 136
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=73.78 E-value=2.6 Score=32.18 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=33.3
Q ss_pred CCCeEEEEcCChhHHHHHH-HHHHHH---HCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 19 RDSTIVDFKNGKVRLLVCA-IVKELM---KAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~-l~~~L~---~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
...++||.|+++ ..+++ +.+.+. ..++.+..++|+.+...+...+. ...+|+|+|.-
T Consensus 81 ~~~~~lil~p~~--~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 81 EPGKVIVLVNKV--LLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCCEEEEESSH--HHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCCcEEEEECHH--HHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 356788899986 55666 444443 34688999999865433221111 14678888854
No 137
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=73.43 E-value=4.4 Score=34.25 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=49.3
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHHC-----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc--
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKA-----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA-- 83 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~-- 83 (231)
+..+.......++||.++++ ..+.++++.+... +..+...+++..... ......+|+|+|+-.-
T Consensus 86 ~~~~~~~~~~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~~l~~ 156 (412)
T 3fht_A 86 LSQVEPANKYPQCLCLSPTY--ELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLD 156 (412)
T ss_dssp HHHCCTTSCSCCEEEECSSH--HHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECHHHHHH
T ss_pred HHHhhhcCCCCCEEEECCCH--HHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECchHHHH
Confidence 33344444455888899987 7789888877652 567777777654221 1244578999996322
Q ss_pred -----cccCCCCCcEEEE
Q psy17587 84 -----RGLDVKHLNLVVN 96 (231)
Q Consensus 84 -----~Gldip~v~~VI~ 96 (231)
..+++..+++||.
T Consensus 157 ~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 157 WCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp HHTTSCSSCGGGCCEEEE
T ss_pred HHHhcCCcChhhCcEEEE
Confidence 3456667777775
No 138
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=71.19 E-value=3.5 Score=29.64 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.||++|.+-.+ ....+..|...|++ +..+.||+.
T Consensus 72 ~~~~~ivv~C~sG~R--S~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGN--SELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTT--HHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCc--HHHHHHHHHHcCCcceEEecCCcc
Confidence 457889999988544 66777888888995 889999984
No 139
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=69.51 E-value=2.3 Score=42.08 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=50.8
Q ss_pred cccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccccc-cCC
Q psy17587 15 DQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAARG-LDV 88 (231)
Q Consensus 15 ~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~G-ldi 88 (231)
.....+.++||.++++ ..+.+.++.+....-.+..++|+++ .++..+|+|+|+ .+.++ ..+
T Consensus 222 ~~l~~g~rvlvl~Ptr--aLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l 288 (1108)
T 3l9o_A 222 QSLKNKQRVIYTSPIK--ALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVM 288 (1108)
T ss_dssp HHHHTTCEEEEEESSH--HHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHH
T ss_pred HHHhcCCeEEEEcCcH--HHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCcccc
Confidence 3334567888889988 8899999999876568999999987 346789999994 33333 335
Q ss_pred CCCcEEEE
Q psy17587 89 KHLNLVVN 96 (231)
Q Consensus 89 p~v~~VI~ 96 (231)
.++.+||.
T Consensus 289 ~~l~lVVI 296 (1108)
T 3l9o_A 289 REVAWVIF 296 (1108)
T ss_dssp HHEEEEEE
T ss_pred ccCCEEEE
Confidence 56777765
No 140
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=68.07 E-value=5.2 Score=38.75 Aligned_cols=54 Identities=7% Similarity=-0.015 Sum_probs=40.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHH----HHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKEL----MKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
+..++|.|+++ ..+.+.++.+ ...|+++.++.|+++..+|.... .++|+++|+.
T Consensus 120 G~qv~VvTPTr--eLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 120 GKGVHVVTVND--YLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp CSCCEEEESSH--HHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 45677688876 6666666554 34599999999999988777654 3799999964
No 141
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=67.82 E-value=11 Score=33.71 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=47.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHC--------CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc-----c--c
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKA--------GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA-----R--G 85 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~-----~--G 85 (231)
.++||.++++ ..+.++++.+... ++.+..++|+.+... .+..+..+..+|+|+|+-.- + .
T Consensus 147 ~~~lil~Ptr--~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 221 (563)
T 3i5x_A 147 VKAVIVAPTR--DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSN 221 (563)
T ss_dssp CCEEEECSSH--HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred eeEEEEcCcH--HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccc
Confidence 4788899987 7788888888652 456778888876544 34455556789999996322 1 2
Q ss_pred cCCCCCcEEEE
Q psy17587 86 LDVKHLNLVVN 96 (231)
Q Consensus 86 ldip~v~~VI~ 96 (231)
..+..+++||.
T Consensus 222 ~~~~~~~~lVi 232 (563)
T 3i5x_A 222 KFFRFVDYKVL 232 (563)
T ss_dssp HHCTTCCEEEE
T ss_pred cccccceEEEE
Confidence 34555666553
No 142
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=67.27 E-value=1.3 Score=40.97 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=45.2
Q ss_pred CeEEEEcCChhHHHHHHH-HHHHHHC---CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc------------c
Q psy17587 21 STIVDFKNGKVRLLVCAI-VKELMKA---GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA------------R 84 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l-~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~------------~ 84 (231)
.++||.++++ ..+.++ .+.|... ++.+..+||+.+..++...+. +..+|+|+|+-.- .
T Consensus 57 ~~vlvl~P~~--~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~ 130 (699)
T 4gl2_A 57 GKVIVLVNKV--LLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDA 130 (699)
T ss_dssp CCBCCEESCS--HHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------
T ss_pred CeEEEEECCH--HHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhcccccccc
Confidence 6788899987 667888 7777654 289999999987654433332 5689999996322 2
Q ss_pred ccCCCCCcEEEE
Q psy17587 85 GLDVKHLNLVVN 96 (231)
Q Consensus 85 Gldip~v~~VI~ 96 (231)
.+.+..+++||.
T Consensus 131 ~~~~~~~~lvVi 142 (699)
T 4gl2_A 131 GVQLSDFSLIII 142 (699)
T ss_dssp CCCGGGCSEEEE
T ss_pred ceecccCcEEEE
Confidence 356677887775
No 143
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=67.10 E-value=8.2 Score=33.70 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=47.2
Q ss_pred ccccccCCCCeEEEEcCChhHHHHHHHHHHHHH-----CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc---
Q psy17587 12 GGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMK-----AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA--- 83 (231)
Q Consensus 12 ~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~-----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~--- 83 (231)
..+.......++||.++++ ..+.++++.+.. .++.+....++..... ......+|+|+|+-.-
T Consensus 154 ~~l~~~~~~~~~lil~Pt~--~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Ivv~Tp~~l~~~ 224 (479)
T 3fmp_B 154 SQVEPANKYPQCLCLSPTY--ELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDW 224 (479)
T ss_dssp TTCCTTSCSCCEEEECSSH--HHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHH
T ss_pred HHHhhcCCCCcEEEEeChH--HHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-------cccCCCCEEEECchHHHHH
Confidence 3333333344788899987 778888776654 2466666666543211 1133568999997433
Q ss_pred ----cccCCCCCcEEEE
Q psy17587 84 ----RGLDVKHLNLVVN 96 (231)
Q Consensus 84 ----~Gldip~v~~VI~ 96 (231)
..+++.++.+||.
T Consensus 225 l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 225 CSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp HTTSCCCCGGGCCEEEE
T ss_pred HHhcCCcCcccCCEEEE
Confidence 3567788888775
No 144
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=66.66 E-value=6.2 Score=35.33 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=37.5
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
.|.+.+....+++.+|+||.+-.+ ....+..|...|+++..+.||+.
T Consensus 513 ~l~~~~~~~~~~~~iv~~c~~g~r--s~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 513 ELRDRMHELPKDKEIIIFSQVGLR--GNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp GTTTSGGGSCTTSEEEEECSSSHH--HHHHHHHHHHTTCCEEEETTHHH
T ss_pred HHHHHHhhcCCcCeEEEEeCCchH--HHHHHHHHHHcCCCEEEEcChHH
Confidence 445555666778999999988634 78888999999999999999864
No 145
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=64.90 E-value=30 Score=25.83 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=36.1
Q ss_pred eEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEEEecCC
Q psy17587 22 TIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCP 100 (231)
Q Consensus 22 ~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI~~d~P 100 (231)
.|.|.|.+. .++..+.+.|...|+++..+.++-. ...-.|.|+|--.+.|+.+ +.||.+++.
T Consensus 63 ~iAVL~r~~--~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 63 TTAIIGKSL--AECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp CEEEEESSH--HHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETCB
T ss_pred cEEEEecCH--HHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecCC
Confidence 344444443 3455555555555555544443321 1124688999999999998 566666653
No 146
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=63.46 E-value=36 Score=23.92 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=45.6
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
.+.+..+..-..++|.+.. ..+++....+.-...|..+...+.......|..+.+.|++...++-.
T Consensus 69 reiwerypqldvvvivttd-dkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvrt 134 (162)
T 2l82_A 69 REIWERYPQLDVVVIVTTD-DKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRT 134 (162)
T ss_dssp HHHHHHCTTCCEEEEEECC-CHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEE
T ss_pred HHHHHhCCCCcEEEEEecC-cHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceeee
Confidence 3444556555555544433 22566666666677899999999999999999999999986655543
No 147
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=62.32 E-value=7.6 Score=31.50 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=30.7
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHH-HCCC-CeeeccCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELM-KAGY-PCLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~-~~~~-~~~~lhg~~~ 57 (231)
..+++.||+||.+-.+ +...+..|. ..|+ .+..+.|++.
T Consensus 230 ~~~~~~ivvyC~~G~r--s~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 230 ITKDKDIVVYCRIAER--SSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp CCTTSEEEEECSSHHH--HHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCCCEEEECCchHH--HHHHHHHHHHHcCCCCcceeCchHH
Confidence 4567899999998633 677778888 8898 5889999863
No 148
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=61.73 E-value=3.3 Score=37.48 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=47.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH--------CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccc-----c--
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK--------AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAA-----R-- 84 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~--------~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~-----~-- 84 (231)
..++||.++++ ..+.++.+.+.. ..+.+..++|+.+... .+..+..+..+|+|+|+--- +
T Consensus 95 ~~~~lvl~Ptr--~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~ 169 (579)
T 3sqw_A 95 MVKAVIVAPTR--DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYS 169 (579)
T ss_dssp SCCEEEECSSH--HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHH
T ss_pred CCeEEEEcchH--HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCEEEECHHHHHHHHHhcc
Confidence 34788899987 778888888765 2456778888876543 34455556789999996321 1
Q ss_pred ccCCCCCcEEEE
Q psy17587 85 GLDVKHLNLVVN 96 (231)
Q Consensus 85 Gldip~v~~VI~ 96 (231)
...+..+++||.
T Consensus 170 ~~~~~~~~~lVi 181 (579)
T 3sqw_A 170 NKFFRFVDYKVL 181 (579)
T ss_dssp HHHCTTCCEEEE
T ss_pred ccccccCCEEEE
Confidence 234556666554
No 149
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=61.37 E-value=8.1 Score=34.88 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=37.7
Q ss_pred hhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
..|.+.+....+++.+|+||.+-.+ ....+..|...|+++..+.||+.
T Consensus 529 ~~l~~~~~~l~~~~~iv~~C~~g~r--s~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 529 DELRDRLEEVPVDKDIYITCQLGMR--GYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp HHHTTCGGGSCSSSCEEEECSSSHH--HHHHHHHHHHTTCCEEEETTHHH
T ss_pred HHHHHHHhhCCCCCeEEEECCCCcH--HHHHHHHHHHcCCcEEEEcchHH
Confidence 3445556666778899999988633 77888999999999889999874
No 150
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=60.47 E-value=7.1 Score=34.00 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=38.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+.+++|.|+++ ..+.++.+.+...+.+ +..+||+.+. ..+|+|+|.
T Consensus 133 ~~~~Lvl~P~~--~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 133 STPTLIVVPTL--ALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CSCEEEEESSH--HHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCCEEEEECCH--HHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 56788899987 7799999999888888 9999998752 468899986
No 151
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=60.10 E-value=9.4 Score=30.87 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCH
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQ 58 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 58 (231)
.+++.||+||.+-.+ +...+..|...|++ +..+.|++..
T Consensus 228 ~~~~~ivv~C~~G~r--s~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 228 SYDKPIIVSCGSGVT--AAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp CSSSCEEEECCSSST--HHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCCEEEECChHHH--HHHHHHHHHHcCCCCceeeCChHHH
Confidence 467889999987533 77778888889994 8899999863
No 152
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=60.08 E-value=23 Score=24.69 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=38.5
Q ss_pred ccccCCCCeEEEEcCC-hh--HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccccc-CCC
Q psy17587 14 IDQYDRDSTIVDFKNG-KV--RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGL-DVK 89 (231)
Q Consensus 14 L~~~~~~~~iiiF~~~-~~--~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gl-dip 89 (231)
|.+.....+|++.|.+ .. .-.+..+-+.+...|+.+..-+.+...-+. . ..+++++++|.-+.... ++|
T Consensus 15 ~~~~~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~------~-~~~~DlIist~~l~~~~~~ip 87 (113)
T 1tvm_A 15 LYFQGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET------Y-MDGVHLICTTARVDRSFGDIP 87 (113)
T ss_dssp CCCSCSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT------S-TTSCSEEEESSCCCCCSTTCC
T ss_pred HhhcccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh------c-cCCCCEEEECCccccccCCCC
Confidence 4444445678889966 21 123566667777778875444444332111 1 13578888887665434 444
No 153
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=58.66 E-value=8.7 Score=30.39 Aligned_cols=46 Identities=15% Similarity=0.008 Sum_probs=35.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+.+++|+|+++ ..++++.+.+...+.. +..++|+.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~--~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTL--ALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSH--HHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 56788899987 6788888888777777 888888764 2467888874
No 154
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=57.78 E-value=8 Score=31.08 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=31.0
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
..+++.||+||.+-.+ +...+..|...|++ +..+.|++.
T Consensus 220 ~~~~~~ivvyC~~G~r--s~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 220 ITPDKEIVTHCQTHHR--SGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp CCTTSEEEEECSSSSH--HHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCCCCEEEECCchHH--HHHHHHHHHHcCCCCceeeCCcHH
Confidence 3567899999998644 77788888899995 889999863
No 155
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=56.98 E-value=8.2 Score=28.46 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=29.1
Q ss_pred CCeEEEEcCChhH-------HHHHHHHHHHHHCCCCeeeccCCC
Q psy17587 20 DSTIVDFKNGKVR-------LLVCAIVKELMKAGYPCLSLHGGI 56 (231)
Q Consensus 20 ~~~iiiF~~~~~~-------~~~~~l~~~L~~~~~~~~~lhg~~ 56 (231)
++.||+||.+-.+ ..+..++..|...|+++..+.||+
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 6799999987421 126778888999999999999985
No 156
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=56.80 E-value=7.3 Score=31.86 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCCH
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGIDQ 58 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 58 (231)
.+++.||+||.+-.+ +...+..|...|+ ++..+.||+..
T Consensus 179 ~kdk~IVvyC~~G~R--S~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 179 KKDKKIAMFCTGGIR--CEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp GTTSCEEEECSSSHH--HHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCeEEEEeCCChH--HHHHHHHHHHcCCCCEEEecCHHHH
Confidence 467899999998633 8888999999998 58899999753
No 157
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=53.81 E-value=8.8 Score=37.50 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=47.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccccc-cCCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAARG-LDVKHL 91 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~G-ldip~v 91 (231)
..+.++|+.++++ ..+.+.++.+....-.+..++|+.+. +...+|+|+|+ .+.++ ..+.++
T Consensus 127 ~~g~rvL~l~Ptk--aLa~Q~~~~l~~~~~~vglltGd~~~-----------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l 193 (1010)
T 2xgj_A 127 KNKQRVIYTSPIK--ALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREV 193 (1010)
T ss_dssp HTTCEEEEEESSH--HHHHHHHHHHHHHHSCEEEECSSCEE-----------CTTCSEEEEEHHHHHHHHHHTCTTGGGE
T ss_pred ccCCeEEEECChH--HHHHHHHHHHHHHhCCEEEEeCCCcc-----------CCCCCEEEEcHHHHHHHHHcCcchhhcC
Confidence 4567888889987 78999999887654488899998763 23578999996 22233 455667
Q ss_pred cEEEE
Q psy17587 92 NLVVN 96 (231)
Q Consensus 92 ~~VI~ 96 (231)
.+||.
T Consensus 194 ~lVVi 198 (1010)
T 2xgj_A 194 AWVIF 198 (1010)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 77765
No 158
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=52.00 E-value=5.5 Score=36.95 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=48.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHH---CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccccccC-CC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMK---AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAARGLD-VK 89 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~Gld-ip 89 (231)
.+.++|+.++++ ..+.+.++.+.. .|+++..++|+....++ ..+..+|+|+|+ .+..+.. +.
T Consensus 67 ~~~~~l~i~P~r--~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~ 137 (702)
T 2p6r_A 67 KGGKSLYVVPLR--ALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIK 137 (702)
T ss_dssp TTCCEEEEESSH--HHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGG
T ss_pred hCCcEEEEeCcH--HHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHh
Confidence 367888889987 778888888742 37899999998765442 134789999996 2333322 56
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
++++||.
T Consensus 138 ~~~~vIi 144 (702)
T 2p6r_A 138 AVSCLVV 144 (702)
T ss_dssp GCCEEEE
T ss_pred hcCEEEE
Confidence 7777775
No 159
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=50.80 E-value=63 Score=25.85 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=40.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHH-HHHHHh--CCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDS-TIVDFK--NGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~-~~~~F~--~g~~~vLvaT~ 80 (231)
+-++++.-.+. +.++.+.+.+...|-++..+..+++..+-.+ .++... -|.++|||..-
T Consensus 31 Ga~Vv~~~~~~--~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 31 DSIVVAVELLE--DRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 44555444444 5688999999988999999999988665432 222222 27899999764
No 160
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=50.72 E-value=37 Score=27.46 Aligned_cols=71 Identities=20% Similarity=0.043 Sum_probs=43.9
Q ss_pred CchhhhhccccccCCCC-eEEEEcCChhHHHHHHHHHHHHHCCCCeeeccC---CCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 5 YPCLSLHGGIDQYDRDS-TIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHG---GIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~-~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg---~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+....|.+.|.. ++ ++++++.... .+.|.+.|...|..+..+.- .-.........+.+..+.+++++-|+
T Consensus 143 ~~~e~L~~~l~~---g~~~vLi~r~~~~---~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS 216 (286)
T 3d8t_A 143 GTSKSLLPLLPQ---GRGVAALQLYGKP---LPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVA 216 (286)
T ss_dssp SSGGGGGGGCCC---CCSEEEEECSSSC---CHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESS
T ss_pred ccHHHHHHHHHc---CCceEEEEccCcc---cHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEEC
Confidence 445667777665 66 8887776532 46789999998876653321 22233335556667777776666554
Q ss_pred c
Q psy17587 81 V 81 (231)
Q Consensus 81 ~ 81 (231)
.
T Consensus 217 ~ 217 (286)
T 3d8t_A 217 A 217 (286)
T ss_dssp H
T ss_pred H
Confidence 3
No 161
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=50.69 E-value=17 Score=31.83 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=48.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC----CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc-c--cCCCCCc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA----GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR-G--LDVKHLN 92 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~-G--ldip~v~ 92 (231)
..+++|.|+++ ..+.++.+.+... +..+..+||+.+..++ ..+..+|+|+|.-.-. . ..+.++.
T Consensus 157 ~~~vlvl~P~~--~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~ 227 (510)
T 2oca_A 157 EGKILIIVPTT--ALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFG 227 (510)
T ss_dssp SSEEEEEESSH--HHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEE
T ss_pred CCeEEEEECcH--HHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCC
Confidence 34888899987 7789999998765 2467899999876654 4678899999964221 1 3455666
Q ss_pred EEEE
Q psy17587 93 LVVN 96 (231)
Q Consensus 93 ~VI~ 96 (231)
+||.
T Consensus 228 liIi 231 (510)
T 2oca_A 228 MMMN 231 (510)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 162
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=50.21 E-value=13 Score=36.26 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=46.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----cccc-cCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AARG-LDVK 89 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~G-ldip 89 (231)
..+.++||.++++ ..+.++++.+... ++.+..+||+.+ .++..+|+|+|+- +.++ ..+.
T Consensus 80 ~~g~~vlvl~Ptr--aLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~ 146 (997)
T 4a4z_A 80 RNMTKTIYTSPIK--ALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEILRSMLYRGADLIR 146 (997)
T ss_dssp HTTCEEEEEESCG--GGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSGGG
T ss_pred hcCCeEEEEeCCH--HHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHHHHHHHHhCchhhc
Confidence 3467788889988 7799999999875 679999999875 3456889998863 1122 2345
Q ss_pred CCcEEEE
Q psy17587 90 HLNLVVN 96 (231)
Q Consensus 90 ~v~~VI~ 96 (231)
++.+||.
T Consensus 147 ~l~lvVi 153 (997)
T 4a4z_A 147 DVEFVIF 153 (997)
T ss_dssp GEEEEEE
T ss_pred CCCEEEE
Confidence 5666554
No 163
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=49.36 E-value=23 Score=31.29 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=43.9
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCC----CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcc---
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAG----YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVA--- 82 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~--- 82 (231)
++..+.....+.++||.++++ ..+.++.+.+...+ ..+....++.... -.....+|+|+|.-.
T Consensus 179 il~~l~~~~~~~~vLvl~P~~--~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Ivv~T~~~l~~ 248 (508)
T 3fho_A 179 MLSRVDASVPKPQAICLAPSR--ELARQIMDVVTEMGKYTEVKTAFGIKDSVPK--------GAKIDAQIVIGTPGTVMD 248 (508)
T ss_dssp HHHHSCTTCCSCCEEEECSCH--HHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHH
T ss_pred HHHHHHhCCCCceEEEEECcH--HHHHHHHHHHHHhCCccCeeEEEEeCCcccc--------cccCCCCEEEECHHHHHH
Confidence 334444444456888899987 77999999887642 3333333332211 113367899999642
Q ss_pred ---ccccCCCCCcEEEE
Q psy17587 83 ---ARGLDVKHLNLVVN 96 (231)
Q Consensus 83 ---~~Gldip~v~~VI~ 96 (231)
...+++..+++||.
T Consensus 249 ~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 249 LMKRRQLDARDIKVFVL 265 (508)
T ss_dssp HHHTTCSCCTTCCEEEE
T ss_pred HHHcCCccccCCCEEEE
Confidence 22456778888775
No 164
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=49.26 E-value=13 Score=29.01 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=30.9
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
..+++.||+||.+-. .+...+..|...|.++..+.|++.
T Consensus 181 ~~~~~~iv~~C~~G~--rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 181 LQPGQEVGVYCHSGA--RSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp CCTTCEEEEECSSSH--HHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCCCEEEEcCChH--HHHHHHHHHHHcCCCcEEecCcHH
Confidence 346789999999863 377888888888866888999864
No 165
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=49.07 E-value=12 Score=31.05 Aligned_cols=45 Identities=16% Similarity=0.030 Sum_probs=32.8
Q ss_pred hccccccCCCCeEEEEcCChhHHHHHHHHHHHHH-CCCC-eeeccCCCC
Q psy17587 11 HGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMK-AGYP-CLSLHGGID 57 (231)
Q Consensus 11 ~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~-~~~~-~~~lhg~~~ 57 (231)
...+....+++.||+||.+-.+ +...+..|.. .|++ +..+.|++.
T Consensus 250 ~~~~~~l~~~~~ivvyC~sG~r--s~~a~~~L~~~~G~~~v~~~~GG~~ 296 (318)
T 3hzu_A 250 ERLYDFINPDDQTVVYCRIGER--SSHTWFVLTHLLGKADVRNYDGSWT 296 (318)
T ss_dssp HHHTTTCCTTCCCEEECSSSHH--HHHHHHHHHHTSCCSSCEECTTHHH
T ss_pred HHHhcCCCCCCcEEEEcCChHH--HHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 3333445567899999998633 7777788876 8985 889999853
No 166
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=45.97 E-value=18 Score=29.04 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=29.7
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
..+++.|||+|.+-. ..+...+..|...|+ ++..+.||+.
T Consensus 74 i~~~~~vvvyc~~g~-~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 74 IANEDTVILYGGNNN-WFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp CCTTSEEEEECSGGG-HHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred CCCCCeEEEECCCCC-chHHHHHHHHHHcCCCcEEEecCCHH
Confidence 346788999998632 235677778888898 6889999864
No 167
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=45.87 E-value=21 Score=27.07 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=34.0
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccC-CCC
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHG-GID 57 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg-~~~ 57 (231)
...++++++||+++-....+-.++..++..|.+++.+.+ ..+
T Consensus 74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~ 116 (170)
T 3jx9_A 74 TLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVT 116 (170)
T ss_dssp CCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCC
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchh
Confidence 556789999999885445678889999999999999998 443
No 168
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=45.50 E-value=17 Score=29.14 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.|||+|.+-. ..+...+..|...|+. +..+.||+.
T Consensus 79 ~~~~~vvvyc~~g~-~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 79 RPEAVYVVYDDEGG-GWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp CTTCEEEEECSSSS-HHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCC-ccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 46789999998642 1367788889999995 888999864
No 169
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=45.33 E-value=8.4 Score=30.75 Aligned_cols=44 Identities=11% Similarity=-0.006 Sum_probs=29.6
Q ss_pred CCchhhhhcccc--c--cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee
Q psy17587 4 GYPCLSLHGGID--Q--YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL 50 (231)
Q Consensus 4 ~~k~~~L~~~L~--~--~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~ 50 (231)
++....|.+.+. . ...++++++++.... -+.|.+.|...|+.+.
T Consensus 113 ~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~---r~~L~~~L~~~G~~v~ 160 (254)
T 4es6_A 113 GDDSEALLALPAFQDSLRVHDPKVLIMRGEGG---REFLAERLRGQGVQVD 160 (254)
T ss_dssp CCSHHHHHTCHHHHHHTCSSSCEEEEEECSSC---CCHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHhHhhcccccCCCCEEEEEcCCcc---HHHHHHHHHHCCCEEE
Confidence 355667777775 2 456788887776532 4778888888887654
No 170
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=45.27 E-value=19 Score=31.56 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=35.7
Q ss_pred hhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 9 SLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 9 ~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.|.+.+....+++.+|++|.+-.+ +...+..|...|++ +..+.|++.
T Consensus 416 ~l~~~~~~l~~~~~vvv~C~~G~r--a~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 416 KLAAHIHDVPRDGSVCVYCRTGGR--SAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp HHTTTGGGSCSSSCEEEECSSSHH--HHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCHH--HHHHHHHHHHcCCCCEEEecChHH
Confidence 344455556678899999998733 77788888888985 888998864
No 171
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=44.81 E-value=35 Score=26.99 Aligned_cols=70 Identities=20% Similarity=0.053 Sum_probs=42.1
Q ss_pred CchhhhhccccccCCCC-eEEEEcCChhHHHHHHHHHHHHHCCCCeeecc---CCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 5 YPCLSLHGGIDQYDRDS-TIVDFKNGKVRLLVCAIVKELMKAGYPCLSLH---GGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 5 ~k~~~L~~~L~~~~~~~-~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lh---g~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+....|.+.|.. ++ ++++++.... .+.|.+.|...|..+..+. -......-....+.+..+.+++++-|+
T Consensus 118 ~~~e~L~~~l~~---g~~~vL~~r~~~~---~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS 191 (261)
T 1wcw_A 118 GTSKSLLPLLPQ---GRGVAALQLYGKP---LPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVA 191 (261)
T ss_dssp SSHHHHGGGSCC---CCEEEEEECCSSC---CHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ccHHHHHHHHHc---CCceEEEEccCcc---cHHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEEC
Confidence 445667777665 67 8887776532 4778899998886654222 122232234455567667766665444
No 172
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=44.49 E-value=20 Score=29.77 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=33.5
Q ss_pred hhccccc--cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 10 LHGGIDQ--YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 10 L~~~L~~--~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
+...+.. ..+++.|||||.+-. ..+...+..|+..|+. +..+.||+.
T Consensus 99 ~~~~l~~lgi~~~~~vVvyc~~g~-~~a~~a~~~L~~~G~~~V~~L~GG~~ 148 (318)
T 3hzu_A 99 FAELMDRKGIARDDTVVIYGDKSN-WWAAYALWVFTLFGHADVRLLNGGRD 148 (318)
T ss_dssp HHHHHHHTTCCTTCEEEEECSGGG-HHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred HHHHHHHcCCCCCCeEEEECCCCC-ccHHHHHHHHHHcCCCceEEccCCHH
Confidence 3334444 346789999998753 1367788888899985 889999863
No 173
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=44.18 E-value=9.2 Score=35.42 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=47.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHH---HCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC-----ccccccC-CCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELM---KAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS-----VAARGLD-VKH 90 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~---~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~-----~~~~Gld-ip~ 90 (231)
+.++++.++++ ..+.++++.+. ..|+++..++|+....++. .+..+|+|+|+ .+..+.. +.+
T Consensus 75 ~~~il~i~P~r--~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~ 145 (715)
T 2va8_A 75 GGKAIYVTPLR--ALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW-------LKNYDIIITTYEKLDSLWRHRPEWLNE 145 (715)
T ss_dssp CSEEEEECSCH--HHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG-------GGGCSEEEECHHHHHHHHHHCCGGGGG
T ss_pred CCeEEEEeCcH--HHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh-------cCCCCEEEEcHHHHHHHHhCChhHhhc
Confidence 57888889987 77888888873 2388999999987755431 13688999997 2222322 566
Q ss_pred CcEEEE
Q psy17587 91 LNLVVN 96 (231)
Q Consensus 91 v~~VI~ 96 (231)
+++||.
T Consensus 146 ~~~vIi 151 (715)
T 2va8_A 146 VNYFVL 151 (715)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 777775
No 174
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=43.83 E-value=1.1e+02 Score=25.44 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=43.9
Q ss_pred ccCCCCeEEEEcCCh-----hHHHHHHHHHHHHHCCCCeeecc------C--CCCHHHHHHHHHH-HhCCCccEEEecC
Q psy17587 16 QYDRDSTIVDFKNGK-----VRLLVCAIVKELMKAGYPCLSLH------G--GIDQYDRDSTIVD-FKNGKVRLLIATS 80 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~-----~~~~~~~l~~~L~~~~~~~~~lh------g--~~~~~~R~~~~~~-F~~g~~~vLvaT~ 80 (231)
...++++|-|.+++. .....+.-.+.|+..|+++..-- + .=++++|..-+.+ |.+.+++.++|+-
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 345688888887662 12346667778888888776321 1 1257777766555 8899999999873
No 175
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=42.17 E-value=12 Score=26.09 Aligned_cols=36 Identities=17% Similarity=0.024 Sum_probs=25.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC------C-CCeeeccCCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA------G-YPCLSLHGGID 57 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~------~-~~~~~lhg~~~ 57 (231)
++.||++|.+-.+ ....+..|... | .++..+.||+.
T Consensus 72 ~~~ivv~C~~G~r--s~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 72 AVPIYVICKLGND--SQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp CEEEEEECSSSSH--HHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred CCeEEEEcCCCCc--HHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 3489999987533 66677777766 3 36888999875
No 176
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=41.63 E-value=15 Score=29.53 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
.+++.|||||.+-. ..+...+..|...|+ ++..+.||+.
T Consensus 84 ~~~~~ivvyc~~g~-~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 84 NQDKHLIVYDEGNL-FSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp CTTSEEEEECSSSC-SSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCCeEEEECCCCC-ccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 45789999998741 126677888888999 5889999864
No 177
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=40.43 E-value=74 Score=24.23 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=39.5
Q ss_pred CCCeEEEEcCChhH------------HHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC
Q psy17587 19 RDSTIVDFKNGKVR------------LLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG 71 (231)
Q Consensus 19 ~~~~iiiF~~~~~~------------~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 71 (231)
+...+|||+|..+. .-++.|.+.|...|+.|.. |-.++.++-.+.+++|...
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~-~~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKC-FNDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHTS
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHhhh
Confidence 34567778775321 2478899999999999755 4579999999999999753
No 178
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=40.26 E-value=18 Score=29.54 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=30.0
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
..+++.||+||.+-.+ +...+..|...|++ +..+.|++.
T Consensus 237 ~~~~~~ivv~C~sG~r--s~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 237 VDLTKPLIATCRKGVT--ACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp CCTTSCEEEECSSSST--HHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCCCEEEECCcHHH--HHHHHHHHHHcCCCCceeeCCcHH
Confidence 3567899999988533 66677778888985 889999864
No 179
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=40.04 E-value=21 Score=26.06 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=24.7
Q ss_pred CCCCeEEEEcC-Ch--hHHHHHHHHHHH----HHCCC-CeeeccCCCC
Q psy17587 18 DRDSTIVDFKN-GK--VRLLVCAIVKEL----MKAGY-PCLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~-~~--~~~~~~~l~~~L----~~~~~-~~~~lhg~~~ 57 (231)
.+++.|||+|. +- ....+..|.+.| ...|+ ++..+.||+.
T Consensus 83 ~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 83 KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp CSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 56788999998 42 112233333322 34688 5889999985
No 180
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=39.73 E-value=78 Score=26.15 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=40.0
Q ss_pred CCeEEEEcCChh---------HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC
Q psy17587 20 DSTIVDFKNGKV---------RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN 70 (231)
Q Consensus 20 ~~~iiiF~~~~~---------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 70 (231)
.+.+|||+|... ..-++.|.+.|...|+.|. .+-+++.++-.+.+++|..
T Consensus 60 ~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 60 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred ccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 456888988731 2348899999999999974 6668999999999999964
No 181
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=39.20 E-value=1.4e+02 Score=24.75 Aligned_cols=65 Identities=9% Similarity=-0.022 Sum_probs=44.6
Q ss_pred ccCCCCeEEEEcCCh--hHHHHHHHHHHHHHCCCCeeec------cC--CCCHHHHHHHHHH-HhCCCccEEEecC
Q psy17587 16 QYDRDSTIVDFKNGK--VRLLVCAIVKELMKAGYPCLSL------HG--GIDQYDRDSTIVD-FKNGKVRLLIATS 80 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~--~~~~~~~l~~~L~~~~~~~~~l------hg--~~~~~~R~~~~~~-F~~g~~~vLvaT~ 80 (231)
...++++|-|++++- .....+...+.|+..|+.+..- ++ .=++++|..-+.+ |.+.+++.++|+-
T Consensus 13 ~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 88 (311)
T 1zl0_A 13 WQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLR 88 (311)
T ss_dssp CCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESC
T ss_pred cCCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 344678888887652 1244677778888899888741 11 2367777766665 7889999999874
No 182
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=39.10 E-value=17 Score=28.51 Aligned_cols=71 Identities=11% Similarity=0.016 Sum_probs=39.6
Q ss_pred chhhhhccccc-cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee---eccCCCCHHHHHHHHHHHhCCCccEEEec
Q psy17587 6 PCLSLHGGIDQ-YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL---SLHGGIDQYDRDSTIVDFKNGKVRLLIAT 79 (231)
Q Consensus 6 k~~~L~~~L~~-~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~---~lhg~~~~~~R~~~~~~F~~g~~~vLvaT 79 (231)
....|.+++.. ...++++++++.... -+.|.+.|...|..+. +|.-...+.......+.+..+.+++++-|
T Consensus 105 ~~e~L~~~~~~~~~~g~~vL~~rg~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ft 179 (240)
T 3mw8_A 105 ATEGLLTLPSLEQVSGKQIVIVRGKGG---REAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDTIVVT 179 (240)
T ss_dssp CGGGGGGCGGGTCCTTCEEEEEEESSS---CCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCEEECC
T ss_pred CHHHHHHhhhhccCCCCEEEEEeCCCc---HHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHhCCCCEEEEc
Confidence 55667776653 345788987776532 4788899998886643 33322222222333444555555544433
No 183
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=38.98 E-value=18 Score=29.12 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.||+||.+-. ..+...+..|...|+. +..+.||+.
T Consensus 77 ~~~~~ivvyc~~g~-~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 77 SNDTTVVLYGDKNN-WWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp CTTCEEEEECHHHH-HHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCCeEEEECCCCC-ccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 56789999998742 1366778888888984 889999864
No 184
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=38.70 E-value=25 Score=27.39 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=29.8
Q ss_pred cccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCC
Q psy17587 13 GIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGG 55 (231)
Q Consensus 13 ~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~ 55 (231)
.+.....++.||++|.+-. ..+..++..|. .|+. +..+.||
T Consensus 54 ~~~~l~~~~~ivvyc~~g~-~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 54 LFQTLGLRSPVVLYDEGLT-SRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp HHHHTTCCSSEEEECSSSC-HHHHHHHHHHH-HTTCCEEEECSS
T ss_pred HHHhcCCCCEEEEEcCCCC-ccHHHHHHHHH-cCCceEEEeCCC
Confidence 3334444788999998753 13677788888 8985 8899998
No 185
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=38.43 E-value=15 Score=25.91 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=27.7
Q ss_pred CCeEEEEcCChhHHH-------HHHHHHHHHHCCCCeeeccCCCC
Q psy17587 20 DSTIVDFKNGKVRLL-------VCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~-------~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
++.||+||.+-.+.. +..++..|...|+++..+.||+.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 578999998742210 34677888888999999999863
No 186
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=37.93 E-value=27 Score=27.97 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=28.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHH-CCCC-eeeccCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMK-AGYP-CLSLHGGI 56 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~-~~~~-~~~lhg~~ 56 (231)
.+++.||+||.+-.+ +...+..|.. .|+. +..+.|++
T Consensus 224 ~~~~~iv~yC~~G~r--s~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 224 DNSKETIAYCRIGER--SSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp CTTSCEEEECSSHHH--HHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCCEEEEcCcHHH--HHHHHHHHHHHcCCCcceeeCchH
Confidence 467899999998633 6677778875 8985 88999985
No 187
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=37.55 E-value=29 Score=29.98 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
.+++.||+||.+- ..+...+..|...|+ .+..+.|+++
T Consensus 201 ~~~~~ivvyC~~G--~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 201 RHDTTVILYGRDV--YAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp CTTSEEEEECSSH--HHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred CCCCeEEEECCCc--hHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 4578899999986 347788888888898 5889999865
No 188
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=37.12 E-value=49 Score=25.67 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=31.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHH
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDR 61 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 61 (231)
..++-||+|.. .+.+.+.....++..+-+||.-+++.-
T Consensus 53 ~~~VgVfvn~~----~~~i~~~~~~~~ld~vQLHG~e~~~~~ 90 (203)
T 1v5x_A 53 VVRVGVFRDQP----PEEVLRLMEEARLQVAQLHGEEPPEWA 90 (203)
T ss_dssp SEEEEEESSCC----HHHHHHHHHHTTCSEEEECSCCCHHHH
T ss_pred CCEEEEEeCCC----HHHHHHHHHhhCCCEEEECCCCCHHHH
Confidence 57888999965 677777777889999999999887643
No 189
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=36.86 E-value=1.5e+02 Score=25.12 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=44.4
Q ss_pred ccCCCCeEEEEcCChh-----HHHHHHHHHHHHHCCCCeeec------cC--CCCHHHHHHHHHH-HhCCCccEEEecC
Q psy17587 16 QYDRDSTIVDFKNGKV-----RLLVCAIVKELMKAGYPCLSL------HG--GIDQYDRDSTIVD-FKNGKVRLLIATS 80 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~-----~~~~~~l~~~L~~~~~~~~~l------hg--~~~~~~R~~~~~~-F~~g~~~vLvaT~ 80 (231)
...++++|-|++++-- ....+.-.+.|+..|+++..- ++ .=++++|..-+.+ |.+.+++.++|+-
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 3556889998987621 234566677888889887632 11 2357777766665 7888999999864
No 190
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=36.39 E-value=1.1e+02 Score=23.15 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=39.1
Q ss_pred CCeEEEEcCCh---------hHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC
Q psy17587 20 DSTIVDFKNGK---------VRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN 70 (231)
Q Consensus 20 ~~~iiiF~~~~---------~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 70 (231)
.+.+|||.|.. ...-++.|.+.|+..|+.|. ++-+++..+-.+.+++|.+
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 45677787753 22448899999999999975 5677999999999999964
No 191
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=35.78 E-value=41 Score=26.84 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=35.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCC----CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAG----YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
..+++|.|+++ ..++++.+.+...+ ..+..++|+.+..+ -..+..+|+|+|.
T Consensus 157 ~~~~lil~Pt~--~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 157 EGKILIIVPTT--ALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp SSEEEEECSSH--HHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCeEEEEECCH--HHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 34788889987 67888888887653 24567777754322 1225678999886
No 192
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=35.60 E-value=91 Score=23.32 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=39.4
Q ss_pred CCCeEEEEcCChh------------HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC
Q psy17587 19 RDSTIVDFKNGKV------------RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN 70 (231)
Q Consensus 19 ~~~~iiiF~~~~~------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 70 (231)
+.+.+|||.|..+ ..-++.|.+.|...|+.| ..|..++.++-.+.+++|..
T Consensus 32 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 32 PRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred CceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 3566777876521 124788999999999997 56778999999999999976
No 193
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=35.08 E-value=34 Score=29.48 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=30.2
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
..+++.||+||.+-.+ +...+..|...|+ ++..+.|++.
T Consensus 355 ~~~~~~ivvyC~sG~r--s~~aa~~L~~~G~~~v~~~~GG~~ 394 (423)
T 2wlr_A 355 IKPEQQVSFYCGTGWR--ASETFMYARAMGWKNVSVYDGGWY 394 (423)
T ss_dssp CCTTSEEEEECSSSHH--HHHHHHHHHHTTCSSEEEESSHHH
T ss_pred CCCCCcEEEECCcHHH--HHHHHHHHHHcCCCCcceeCccHH
Confidence 3467899999998634 6677778888998 5888998853
No 194
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=34.31 E-value=17 Score=33.63 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=47.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH---CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc-----cccccC-CCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK---AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV-----AARGLD-VKH 90 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~-----~~~Gld-ip~ 90 (231)
+.++++.++++ ..+.++++.+.. .|+++..+||+.+..++. .+..+|+|+|+- +..+.. +.+
T Consensus 68 ~~~~l~i~P~r--aLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~ 138 (720)
T 2zj8_A 68 GGKAVYIVPLK--ALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKD 138 (720)
T ss_dssp CSEEEEECSSG--GGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCTTGGG
T ss_pred CCEEEEEcCcH--HHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChhhhhc
Confidence 57888889987 778888888742 488999999987755431 246889999972 222222 456
Q ss_pred CcEEEE
Q psy17587 91 LNLVVN 96 (231)
Q Consensus 91 v~~VI~ 96 (231)
+++||.
T Consensus 139 ~~~vIi 144 (720)
T 2zj8_A 139 VKILVA 144 (720)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 666664
No 195
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=33.55 E-value=97 Score=25.05 Aligned_cols=36 Identities=6% Similarity=-0.032 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC
Q psy17587 34 LVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN 70 (231)
Q Consensus 34 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 70 (231)
-++.|.+.|+..|+.| ..+-+++.++-.+.+++|..
T Consensus 50 D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 50 DAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHH
Confidence 4788999999999997 56678999999999999974
No 196
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=32.68 E-value=53 Score=25.48 Aligned_cols=37 Identities=16% Similarity=-0.002 Sum_probs=29.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHH
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYD 60 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 60 (231)
..++-||+|.. .+.+.+.....++..+-+||.-+++.
T Consensus 54 ~~~VgVfvn~~----~~~i~~~~~~~~ld~vQLHG~e~~~~ 90 (205)
T 1nsj_A 54 VFRVGVFVNEE----PEKILDVASYVQLNAVQLHGEEPIEL 90 (205)
T ss_dssp SEEEEEESSCC----HHHHHHHHHHHTCSEEEECSCCCHHH
T ss_pred CCEEEEEeCCC----HHHHHHHHHhhCCCEEEECCCCCHHH
Confidence 57888999965 56677777777899999999987753
No 197
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=32.56 E-value=38 Score=27.39 Aligned_cols=44 Identities=11% Similarity=-0.144 Sum_probs=29.3
Q ss_pred CCchhhhhcccccc-CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee
Q psy17587 4 GYPCLSLHGGIDQY-DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL 50 (231)
Q Consensus 4 ~~k~~~L~~~L~~~-~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~ 50 (231)
++....|.+.+... ..++++++++.... -+.|.+.|...|..+.
T Consensus 140 ~~~ae~L~~~l~~~~~~g~~vLi~rg~~~---r~~L~~~L~~~G~~v~ 184 (286)
T 1jr2_A 140 CGNAEKLAEYICSRESSALPLLFPCGNLK---REILPKALKDKGIAME 184 (286)
T ss_dssp CSSHHHHHHHHHTSCCCSSCEEEEESCGG---GCCHHHHHHTTTCCEE
T ss_pred ccCHHHHHHHHHhcccCCCeEEEECChhh---HHHHHHHHHHCCCeeE
Confidence 34556667766544 34678887776542 4778889988887654
No 198
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=31.92 E-value=24 Score=31.66 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=33.8
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
|...+....+++.||++|.+-.+ +...+..|...|+ .+..+.|++.
T Consensus 420 l~~~l~~l~~~~~ivv~C~sG~r--s~~aa~~L~~~G~~~v~~l~GG~~ 466 (539)
T 1yt8_A 420 LKQALERLGTAERYVLTCGSSLL--ARFAVAEVQALSGKPVFLLDGGTS 466 (539)
T ss_dssp HHHHHHHHCCCSEEEEECSSSHH--HHHHHHHHHHHHCSCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEeCCChH--HHHHHHHHHHcCCCCEEEeCCcHH
Confidence 33444445678899999998633 7778888888887 6889999863
No 199
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=31.89 E-value=1.7e+02 Score=24.44 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=44.2
Q ss_pred ccCCCCeEEEEcCChh-----HHHHHHHHHHHHHCCCCeeec------cC--CCCHHHHHHHHHH-HhCCCccEEEecC
Q psy17587 16 QYDRDSTIVDFKNGKV-----RLLVCAIVKELMKAGYPCLSL------HG--GIDQYDRDSTIVD-FKNGKVRLLIATS 80 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~-----~~~~~~l~~~L~~~~~~~~~l------hg--~~~~~~R~~~~~~-F~~g~~~vLvaT~ 80 (231)
...++++|-|++++-- ....+.-.+.|+..|+++..- ++ .=++++|..-+.+ |.+.+++.++|+-
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 3456889998887631 134666677888888887632 11 2357777766665 7888999999864
No 200
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=31.78 E-value=36 Score=30.42 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccC-CCC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHG-GID 57 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg-~~~ 57 (231)
+++.||++|.+-.+ ....+..|...|+++..+.| |+.
T Consensus 321 ~~~~ivv~c~~g~r--s~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 321 RGARLVLVDDDGVR--ANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp BTCEEEEECSSSSH--HHHHHHHHHHTTCEEEEECSCCGG
T ss_pred CCCeEEEEeCCCCc--HHHHHHHHHHcCCeEEEecCCChH
Confidence 46899999987534 67777889999999999999 863
No 201
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=31.67 E-value=91 Score=28.91 Aligned_cols=64 Identities=9% Similarity=-0.018 Sum_probs=45.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH-CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc---cccccCCCCCcEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK-AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV---AARGLDVKHLNLVV 95 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~---~~~Gldip~v~~VI 95 (231)
+.+++|.++++ +.+.++++.+.. .+..+...+|+.. ..+..+|+|+|+- ....+++.++++||
T Consensus 257 g~~vLVl~PTR--eLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lV 323 (666)
T 3o8b_A 257 GYKVLVLNPSV--AATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIII 323 (666)
T ss_dssp TCCEEEEESCH--HHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEE
T ss_pred CCeEEEEcchH--HHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEE
Confidence 45788889987 789999887753 3677777777754 4677899999873 22346666778777
Q ss_pred E
Q psy17587 96 N 96 (231)
Q Consensus 96 ~ 96 (231)
.
T Consensus 324 l 324 (666)
T 3o8b_A 324 C 324 (666)
T ss_dssp E
T ss_pred E
Confidence 5
No 202
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=31.62 E-value=52 Score=27.73 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=40.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
.+..|||++.. ...+.+.+.+...|++ ++++..+++..+..+..+.-+...++++-
T Consensus 80 ~DlaVi~vp~~--~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rliG 136 (334)
T 3mwd_B 80 VDVLINFASLR--SAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIG 136 (334)
T ss_dssp CCEEEECCCTT--THHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred CcEEEEecCHH--HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 57788899876 3467888888768886 55669999987776666666665565553
No 203
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=31.51 E-value=10 Score=30.59 Aligned_cols=43 Identities=12% Similarity=-0.012 Sum_probs=26.4
Q ss_pred Cchhhhhcccc--c--cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee
Q psy17587 5 YPCLSLHGGID--Q--YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL 50 (231)
Q Consensus 5 ~k~~~L~~~L~--~--~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~ 50 (231)
+....|.+.+. . ...++++++++.... .+.|.+.|...|..+.
T Consensus 122 ~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~---r~~L~~~L~~~G~~v~ 168 (269)
T 3re1_A 122 DDSEALLDHPRLKQAIAVPGSRVLIMRGNEG---RELLAEQLRERGVGVD 168 (269)
T ss_dssp ----CGGGCHHHHHHHCSSSCEEEEEECSSC---CCHHHHHHHHTTCEEE
T ss_pred CCHHHHHHhhhhcccccCCCCEEEEEccCcc---HHHHHHHHHHCCCEEE
Confidence 34555666654 2 456788887776532 4778888888887654
No 204
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=31.42 E-value=88 Score=25.42 Aligned_cols=51 Identities=8% Similarity=0.091 Sum_probs=39.5
Q ss_pred CCCeEEEEcCChh------------HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC
Q psy17587 19 RDSTIVDFKNGKV------------RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN 70 (231)
Q Consensus 19 ~~~~iiiF~~~~~------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 70 (231)
+.+.+|||+|..+ ..-++.|.+.|+..|+.|. .+-+++.++-.+.+++|..
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVST 82 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 3466777887532 1348899999999999975 5668999999999999964
No 205
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=31.32 E-value=1.2e+02 Score=20.51 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=44.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 18 DRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
..-.+|+|.+|.+ +....+.+.+.+.|+++..+--+.+..+-..--....+....|--.||
T Consensus 49 knfekiliisndk--qllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 49 KNFEKILIISNDK--QLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp CSCCCEEEEESCH--HHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred cCcceEEEEcCcH--HHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 3457888899988 778899999999999999998887766644444444455556655554
No 206
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=30.89 E-value=1.5e+02 Score=24.87 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=38.0
Q ss_pred hhhhccccccCCCCeEEEEcCChhH-HHHHHHHHHHHHCCCCe--eeccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 8 LSLHGGIDQYDRDSTIVDFKNGKVR-LLVCAIVKELMKAGYPC--LSLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 8 ~~L~~~L~~~~~~~~iiiF~~~~~~-~~~~~l~~~L~~~~~~~--~~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
..|-+.++.. +++++|.+..... ...+.+.+.|...|+.+ ..+.|.-+...-.+..+.+++...+++|
T Consensus 21 ~~l~~~l~~~--g~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~II 91 (370)
T 1jq5_A 21 TKIANYLEGI--GNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVI 91 (370)
T ss_dssp GGHHHHHTTT--CSEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHc--CCeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3444455554 3677777764321 23566667777677765 3555655555555666666654444444
No 207
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=30.62 E-value=84 Score=21.19 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=32.4
Q ss_pred ccccccCCCCeEEEEcCC----hhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHH
Q psy17587 12 GGIDQYDRDSTIVDFKNG----KVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDS 63 (231)
Q Consensus 12 ~~L~~~~~~~~iiiF~~~----~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 63 (231)
+.+++.-...+|+||..+ ...-.|...-+.|...|+....+.=...+..+..
T Consensus 9 ~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~ 64 (109)
T 3ipz_A 9 DTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQG 64 (109)
T ss_dssp HHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHH
T ss_pred HHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHH
Confidence 344444456789999864 1225688888999888877665543334444443
No 208
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=30.18 E-value=1.1e+02 Score=25.06 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=36.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHHHHHHHHHHHhCCCcc
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQYDRDSTIVDFKNGKVR 74 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~ 74 (231)
.+.+|+|++.. .+..+.+...+.|++ ++.+..+++.++..++.+.-++..++
T Consensus 72 ~DvaIi~vp~~---~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~ 124 (297)
T 2yv2_A 72 INTSIVFVPAP---FAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT 124 (297)
T ss_dssp CCEEEECCCGG---GHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred CCEEEEecCHH---HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 57788898875 345555555678899 77789999988767777766654444
No 209
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=29.91 E-value=24 Score=25.45 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=26.3
Q ss_pred CCCCeEEEEcCChhHH--------HHHHHHHHHHHCCCCeeeccCCCCH
Q psy17587 18 DRDSTIVDFKNGKVRL--------LVCAIVKELMKAGYPCLSLHGGIDQ 58 (231)
Q Consensus 18 ~~~~~iiiF~~~~~~~--------~~~~l~~~L~~~~~~~~~lhg~~~~ 58 (231)
..++.|||||.+-.+. .+..+.+.|...|+++..+.||+..
T Consensus 90 ~~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~v~~L~GG~~~ 138 (154)
T 1hzm_A 90 CGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFSK 138 (154)
T ss_dssp TTSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHHH
T ss_pred CCCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCceEEEcChHHH
Confidence 4567899999763221 1233445554568888899999753
No 210
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.74 E-value=1.2e+02 Score=19.93 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=35.5
Q ss_pred hhccccccC-CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHh
Q psy17587 10 LHGGIDQYD-RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFK 69 (231)
Q Consensus 10 L~~~L~~~~-~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~ 69 (231)
+.+.++... .++.+++|+|+.....++.....-.+.|.+.-.+.+. ++++-.+....|-
T Consensus 40 irdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkst-dpeeltqrvrefl 99 (112)
T 2lnd_A 40 IRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKST-DPEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccC-CHHHHHHHHHHHH
Confidence 334444333 3577888888765555666666666777776666654 4555555555553
No 211
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=29.23 E-value=61 Score=30.47 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=39.0
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHH--------hCCCccEEEecCc
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDF--------KNGKVRLLIATSV 81 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F--------~~g~~~vLvaT~~ 81 (231)
....+.++|.|+.. .+.+..+.+.+. +..+..+||............-+ ..++.+|+|+|--
T Consensus 283 ~~~~~~~LIV~P~s---ll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~ 354 (800)
T 3mwy_W 283 RRQNGPHIIVVPLS---TMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYE 354 (800)
T ss_dssp HSCCSCEEEECCTT---THHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTT
T ss_pred cCCCCCEEEEECch---HHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHH
Confidence 34466777788853 466677776553 68899999986554433333222 2346779988853
No 212
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.93 E-value=1.1e+02 Score=19.39 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=22.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHHHHCCCCeeecc
Q psy17587 21 STIVDFKNGKVRLLVCAIVKELMKAGYPCLSLH 53 (231)
Q Consensus 21 ~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lh 53 (231)
.+|+|+.+.. ...+.+...|...|+.+....
T Consensus 2 ~~iliv~~~~--~~~~~l~~~l~~~g~~v~~~~ 32 (119)
T 2j48_A 2 GHILLLEEED--EAATVVCEMLTAAGFKVIWLV 32 (119)
T ss_dssp CEEEEECCCH--HHHHHHHHHHHHTTCEEEEES
T ss_pred CEEEEEeCCH--HHHHHHHHHHHhCCcEEEEec
Confidence 4677777766 568888888988888766544
No 213
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=28.33 E-value=21 Score=29.36 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=29.0
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
..+++.||++|.+-.+ +...+..|...|+ ++..+.|++.
T Consensus 251 ~~~~~~iv~yC~sG~r--s~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 251 VDLSKPLVATCGSGVT--ACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp CCTTSCEEEECSSSST--THHHHHHHHTTTCCCCCEESSHHH
T ss_pred CCCCCCEEEECCChHH--HHHHHHHHHHcCCCCeeEeCCcHH
Confidence 3457889999987533 5566777888898 5788888864
No 214
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=28.01 E-value=1.9e+02 Score=24.10 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=44.7
Q ss_pred ccCCCCeEEEEcCChh-----HHHHHHHHHHHHHCCCCeeecc------C--CCCHHHHHHHHHH-HhCCCccEEEecC
Q psy17587 16 QYDRDSTIVDFKNGKV-----RLLVCAIVKELMKAGYPCLSLH------G--GIDQYDRDSTIVD-FKNGKVRLLIATS 80 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~-----~~~~~~l~~~L~~~~~~~~~lh------g--~~~~~~R~~~~~~-F~~g~~~vLvaT~ 80 (231)
...++++|-|++++-. ....+...+.|+..|+.+..-. + .=++++|..-+.+ |.+.+++.++|+-
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 3456888888876621 3456777778888888876321 1 1357778766665 7888999999863
No 215
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=27.63 E-value=1.5e+02 Score=20.18 Aligned_cols=82 Identities=9% Similarity=0.090 Sum_probs=42.2
Q ss_pred CCeEEEEcCC-h-hHHHHH-HHHHHHHHCCCC-eeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccccCCCCCcEEE
Q psy17587 20 DSTIVDFKNG-K-VRLLVC-AIVKELMKAGYP-CLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVV 95 (231)
Q Consensus 20 ~~~iiiF~~~-~-~~~~~~-~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~Gldip~v~~VI 95 (231)
..+|++.|.+ . +...+. .+-+.+...|+. +..-|.+...-+. . ..+.+++++|.-+..-++......|+
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~------~-~~~~DlIi~t~~l~~~~~~~~~~~vi 90 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKG------L-ASNYDIVVASNHLIHELDGRTNGKLI 90 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHH------H-GGGCSEEEEETTTGGGTTTSCSSEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhh------c-cCCCcEEEECCchHHHhCcCCCceEE
Confidence 4678888876 2 111222 555666777887 6555544332221 1 23578888887766545422222344
Q ss_pred EecCCCCHhHHHH
Q psy17587 96 NYDCPNHYEDYVH 108 (231)
Q Consensus 96 ~~d~P~~~~~y~q 108 (231)
-.+.-.+..++.+
T Consensus 91 ~i~~~l~~~ei~~ 103 (110)
T 3czc_A 91 GLDNLMDDNEIKT 103 (110)
T ss_dssp EESSTTCHHHHHH
T ss_pred EeeccCCHHHHHH
Confidence 4443334444444
No 216
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=27.50 E-value=13 Score=32.73 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=0.0
Q ss_pred hhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCC-CeeeccCCCCH
Q psy17587 10 LHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGY-PCLSLHGGIDQ 58 (231)
Q Consensus 10 L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 58 (231)
|.+.+....+++.+|++|.+-.+ +...+..|...|+ ++..+-|++..
T Consensus 415 l~~~~~~l~~~~~iv~~C~~G~r--s~~a~~~L~~~G~~~v~~l~GG~~~ 462 (466)
T 3r2u_A 415 LLETDLPFNKNDVIYVHCQSGIR--SSIAIGILEHKGYHNIINVNEGYKD 462 (466)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHhhCCCCCeEEEECCCChH--HHHHHHHHHHcCCCCEEEecChHHH
Confidence 33444555567889999988633 6777788888888 68888888753
No 217
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=27.18 E-value=1.5e+02 Score=24.50 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=39.6
Q ss_pred CCeEEEEcCChh-----------HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC
Q psy17587 20 DSTIVDFKNGKV-----------RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG 71 (231)
Q Consensus 20 ~~~iiiF~~~~~-----------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 71 (231)
.+.+|||.|... ..-++.|.+.|+..|+.| .++-+++..+-.+.+++|...
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV-TVFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 456777876521 244789999999999997 556689999999999999753
No 218
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=26.96 E-value=24 Score=30.12 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=29.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHH
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQY 59 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 59 (231)
++.||+||.+-.+ +...+..|...|++ +..+.|++..=
T Consensus 246 d~~ivvyC~sG~r--s~~a~~~L~~~G~~~v~~~~GG~~~W 284 (373)
T 1okg_A 246 LSSFVFSCGSGVT--ACINIALVHHLGLGHPYLYCGSWSEY 284 (373)
T ss_dssp CTTSEEECSSSST--HHHHHHHHHHTTSCCCEECSSHHHHH
T ss_pred CCCEEEECCchHH--HHHHHHHHHHcCCCCeeEeCChHHHH
Confidence 6789999988533 66677778888985 88999987643
No 219
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=26.79 E-value=1.4e+02 Score=24.34 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=37.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHHHHHHHHHHHhCCCcc
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQYDRDSTIVDFKNGKVR 74 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~ 74 (231)
..+.+|+|++.. .+..+.+...+.|++ ++.+..+++.++..+..+.-++..++
T Consensus 70 ~~Dv~ii~vp~~---~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~ 123 (294)
T 2yv1_A 70 DANASVIFVPAP---FAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK 123 (294)
T ss_dssp CCCEEEECCCHH---HHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEccCHH---HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 457788888865 345555555578898 67789999988777777766654444
No 220
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=26.62 E-value=54 Score=27.87 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=27.8
Q ss_pred CCCCeEEEEc-CChhHHHHHHHHHHHHHCCCCeeeccCCCC
Q psy17587 18 DRDSTIVDFK-NGKVRLLVCAIVKELMKAGYPCLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~-~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 57 (231)
.+++.||||| .+-.+ .+...+..|+..|+++..+.||+.
T Consensus 93 ~~d~~VVvYc~~~G~r-sa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 93 AGELPVLCYDDECGAM-GGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSSSCEEEECSSTTTT-THHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCCCeEEEEeCCCCch-HHHHHHHHHHHcCCeEEEeCCCHH
Confidence 4578899999 43211 233667778888889999999974
No 221
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=26.38 E-value=2.1e+02 Score=24.32 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=46.3
Q ss_pred hhhhhccccccCCCCeEEEEcC-ChhHH--HHHHHHHHHHHCCCCeeeccCC---CCHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKN-GKVRL--LVCAIVKELMKAGYPCLSLHGG---IDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~-~~~~~--~~~~l~~~L~~~~~~~~~lhg~---~~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|-+.++.+. .++++|.+. ..... ..+.+.+.|...|+.+..+.+. -+.+.-.+..+.+++..++++|+
T Consensus 31 l~~l~~~l~~~g-~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 107 (407)
T 1vlj_A 31 IPKIGEEIKNAG-IRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLG 107 (407)
T ss_dssp GGGHHHHHHHTT-CCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcC-CCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 344555555543 257776775 32222 3677888888888888777663 34566677777888888888886
No 222
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=25.71 E-value=2.5e+02 Score=22.24 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=39.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHH-HHHHHHHh--CCCccEEEecC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDR-DSTIVDFK--NGKVRLLIATS 80 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R-~~~~~~F~--~g~~~vLvaT~ 80 (231)
+-++++.-.+. +..+.+.+.+...+.++..+..+++..+- ...++... -|.+++||..-
T Consensus 33 Ga~Vvi~~~~~--~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 33 GARVILNDIRA--TLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp TCEEEECCSCH--HHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 34555333333 55778888888888899999999886543 34444433 37899999764
No 223
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=25.68 E-value=1e+02 Score=25.57 Aligned_cols=90 Identities=7% Similarity=0.009 Sum_probs=55.1
Q ss_pred CCCeEEEEcCChhH----------HHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC----CccEEEecCcccc
Q psy17587 19 RDSTIVDFKNGKVR----------LLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG----KVRLLIATSVAAR 84 (231)
Q Consensus 19 ~~~~iiiF~~~~~~----------~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~vLvaT~~~~~ 84 (231)
+.+.+|||+|.... .-++.|.+.|+..|+.| .+|-+++..+-.+.+++|... ..+.+|+. +++-
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv~-ilSH 137 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTI-FPYGNVNQDQFFKLLTMVTSSSYVQNTECFVMV-LMTH 137 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEE-EEECSCCHHHHHHHHHHHHTSHHHHTCSCEEEE-EESC
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEccCCCHHHHHHHHHHHHHHhhcCCCCEEEEE-EccC
Confidence 44677778776321 34789999999999997 567799999999999999642 22322221 2334
Q ss_pred ccCCCCCcEEEEecCC-CCHhHHHHHh
Q psy17587 85 GLDVKHLNLVVNYDCP-NHYEDYVHRC 110 (231)
Q Consensus 85 Gldip~v~~VI~~d~P-~~~~~y~qr~ 110 (231)
|....+-+.|+-.|-. -++++..+..
T Consensus 138 G~~~~g~g~i~g~D~~~v~l~~I~~~f 164 (316)
T 2fp3_A 138 GNSVEGKEKVEFRDGSVVDMQKIKDHF 164 (316)
T ss_dssp EECCTTCCEEECTTSCEEEHHHHHHTT
T ss_pred CCccCCCCEEEeecCcEEeHHHHHHHh
Confidence 4443333445444443 3455555433
No 224
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=25.65 E-value=2.3e+02 Score=23.75 Aligned_cols=70 Identities=7% Similarity=-0.002 Sum_probs=46.6
Q ss_pred hhhhhccccccCCCCeEEEEcCC-hhHH--HHHHHHHHHHHCCCCeeecc---CCCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNG-KVRL--LVCAIVKELMKAGYPCLSLH---GGIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~-~~~~--~~~~l~~~L~~~~~~~~~lh---g~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
+..|-+.++... ++++|.+.. .... ..+.+.+.|...|+.+..+. +.-+.+.-.+..+.+++...+++|+
T Consensus 29 ~~~l~~~l~~~g--~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 104 (371)
T 1o2d_A 29 LEKRGNIIDLLG--KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVG 104 (371)
T ss_dssp HHHHGGGGGGTC--SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEE
T ss_pred HHHHHHHHHHcC--CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 345556666553 677767654 2112 46888888888888766554 3446667778888888878888886
No 225
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=25.08 E-value=37 Score=19.53 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=17.2
Q ss_pred eccCCCCHHHHHHHHHHHhC
Q psy17587 51 SLHGGIDQYDRDSTIVDFKN 70 (231)
Q Consensus 51 ~lhg~~~~~~R~~~~~~F~~ 70 (231)
.-||+|+-.+.+++++.|-.
T Consensus 3 ~~hG~MD~~~hE~Ty~gFi~ 22 (43)
T 1qle_D 3 HKHGEMDIRHQQATFAGFIK 22 (43)
T ss_dssp CCTTCSCCHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHH
Confidence 46999999999999999853
No 226
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=24.92 E-value=1.6e+02 Score=19.90 Aligned_cols=51 Identities=14% Similarity=0.007 Sum_probs=31.9
Q ss_pred cccccCCCCeEEEEcC-----ChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHH
Q psy17587 13 GIDQYDRDSTIVDFKN-----GKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDST 64 (231)
Q Consensus 13 ~L~~~~~~~~iiiF~~-----~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 64 (231)
.++..-...+|+||+. . ..-.|...-+.|...|+....+.=..++..+...
T Consensus 8 ~v~~~i~~~~Vvlf~kg~~~~~-~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l 63 (111)
T 3zyw_A 8 RLKKLTHAAPCMLFMKGTPQEP-RCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGL 63 (111)
T ss_dssp HHHHHHTSSSEEEEESBCSSSB-SSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHH
T ss_pred HHHHHHhcCCEEEEEecCCCCC-cchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHH
Confidence 3444445678888985 2 2256888888898888776655433444444433
No 227
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=24.74 E-value=1.2e+02 Score=24.52 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=39.1
Q ss_pred CCeEEEEcCChh-----------HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC
Q psy17587 20 DSTIVDFKNGKV-----------RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG 71 (231)
Q Consensus 20 ~~~iiiF~~~~~-----------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 71 (231)
.+.+|||.|... ..-++.|.+.|+..|+.| ..+-+++..+-.+.+++|...
T Consensus 32 rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 32 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV-TVFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEE-EEecCcCHHHHHHHHHHHHHh
Confidence 355677776511 244789999999999997 556689999999999999753
No 228
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=24.74 E-value=1.2e+02 Score=20.23 Aligned_cols=49 Identities=14% Similarity=0.023 Sum_probs=31.3
Q ss_pred CCeEEEEcCC----hhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHH
Q psy17587 20 DSTIVDFKNG----KVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDF 68 (231)
Q Consensus 20 ~~~iiiF~~~----~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 68 (231)
..+|++|+.+ ...-.|..+...|...++....+.=...+..+....+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 4457778662 112358888888988898877777666655555444333
No 229
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=24.21 E-value=1e+02 Score=20.81 Aligned_cols=51 Identities=12% Similarity=-0.015 Sum_probs=31.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHH-CCCC-eeeccCCCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMK-AGYP-CLSLHGGIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~-~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
..+|+|.-+.. ...+.+...|.. .|+. +...... ...+..+.....++++.
T Consensus 8 ~~~iLivdd~~--~~~~~l~~~L~~~~~~~~v~~~~~~------~~a~~~l~~~~~dlii~ 60 (143)
T 3cnb_A 8 DFSILIIEDDK--EFADMLTQFLENLFPYAKIKIAYNP------FDAGDLLHTVKPDVVML 60 (143)
T ss_dssp -CEEEEECSCH--HHHHHHHHHHHHHCTTCEEEEECSH------HHHHHHHHHTCCSEEEE
T ss_pred CceEEEEECCH--HHHHHHHHHHHhccCccEEEEECCH------HHHHHHHHhcCCCEEEE
Confidence 45677666665 567888888887 7887 5544422 33444555556666654
No 230
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=24.13 E-value=51 Score=28.66 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=35.5
Q ss_pred ccCCCCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 16 QYDRDSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 16 ~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
......+++|.|+.. .+.++.+.+.+. +..+..+||+... ...+..+|+|+|.-
T Consensus 82 ~~~~~~~~LIv~P~~---l~~qw~~e~~~~~~~~~v~~~~g~~~~---------~~~~~~~ivi~t~~ 137 (500)
T 1z63_A 82 KENELTPSLVICPLS---VLKNWEEELSKFAPHLRFAVFHEDRSK---------IKLEDYDIILTTYA 137 (500)
T ss_dssp HTTCCSSEEEEECST---THHHHHHHHHHHCTTSCEEECSSSTTS---------CCGGGSSEEEEEHH
T ss_pred hcCCCCCEEEEccHH---HHHHHHHHHHHHCCCceEEEEecCchh---------ccccCCcEEEeeHH
Confidence 334457788889853 467777777654 5778888987532 12345678888853
No 231
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=23.73 E-value=2.2e+02 Score=23.11 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|...|++.|.
T Consensus 28 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg 84 (297)
T 3flu_A 28 EQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTG 84 (297)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCC
Confidence 45667777777888887777665 78899988888764 47788887654
No 232
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=23.25 E-value=48 Score=26.87 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCC--hhHHHHHHHHHHHHHCCC-CeeeccCCCC
Q psy17587 18 DRDSTIVDFKNG--KVRLLVCAIVKELMKAGY-PCLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~--~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 57 (231)
.+++.|||||.+ -. ..+...+..|...|+ ++..+.||+.
T Consensus 90 ~~~~~vVvyc~~~~g~-~~a~~a~~~L~~~G~~~V~~L~GG~~ 131 (296)
T 1rhs_A 90 SNDTHVVVYDGDDLGS-FYAPRVWWMFRVFGHRTVSVLNGGFR 131 (296)
T ss_dssp CTTCEEEEECCCSSSC-SSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCCCc-chHHHHHHHHHHcCCCcEEEcCCCHH
Confidence 457889999986 21 125567777888898 5889999854
No 233
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.19 E-value=2.2e+02 Score=23.21 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|.+.|++.|.
T Consensus 36 ~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg 92 (304)
T 3l21_A 36 ATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAG 92 (304)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 45677778888888887777765 88899998888764 47788887763
No 234
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=23.05 E-value=73 Score=26.73 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=41.2
Q ss_pred CCCeEEEE---cCChhHHHHHHHHHHHHHCCC---CeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 19 RDSTIVDF---KNGKVRLLVCAIVKELMKAGY---PCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 19 ~~~~iiiF---~~~~~~~~~~~l~~~L~~~~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.++.+||. +.+- .++...++.|++.|- .+.+.||-++.. ..+.+.+..++-+++|+....
T Consensus 212 ~gk~viIVDDii~TG--~Tl~~a~~~L~~~Ga~~v~~~~tH~v~~~~----a~e~l~~~~i~~vv~t~tip~ 277 (326)
T 3s5j_B 212 KDRVAILVDDMADTC--GTICHAADKLLSAGATRVYAILTHGIFSGP----AISRINNACFEAVVVTNTIPQ 277 (326)
T ss_dssp TTSEEEEEEEEESSC--HHHHHHHHHHHHTTCSEEEEEEEEECCCTT----HHHHHHHSCCSEEEEETTSCC
T ss_pred CCCEEEEEccccCCc--HHHHHHHHHHHHcCCCEEEEEEEecccCch----HHHHHhhCCCCEEEEecCCCC
Confidence 46677765 4444 457888888988764 466788877643 345556577888999988643
No 235
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=23.02 E-value=1.1e+02 Score=24.87 Aligned_cols=71 Identities=7% Similarity=0.133 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC---CccEEEecCccccccCCCCCcEEEEecCCCCHhHHHHHh
Q psy17587 34 LVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG---KVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRC 110 (231)
Q Consensus 34 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g---~~~vLvaT~~~~~Gldip~v~~VI~~d~P~~~~~y~qr~ 110 (231)
-++.|.+.|+..|+.| ..+-+++..+-.+.+++|... ..+.+|+. +++-|.. ..|+-.|-+-++++..+..
T Consensus 70 D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~dh~~~d~~vv~-ilSHG~~----g~i~g~D~~v~l~~I~~~f 143 (277)
T 4ehd_A 70 DAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKEDHSKRSSFVCV-LLSHGEE----GIIFGTNGPVDLKKITNFF 143 (277)
T ss_dssp HHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTSCCTTEEEEEEE-EESCEET----TEEEETTEEEEHHHHHHTT
T ss_pred HHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhhcccCCCEEEEE-EEcCCCC----CEEEEeCCcEeHHHHHHHh
Confidence 4789999999999997 567789999999999999853 22222221 2333443 3455445444555655544
No 236
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=22.72 E-value=2e+02 Score=23.31 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=37.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCC-eeeccCCCCHHHHHHHHHHHhCCCcc
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYP-CLSLHGGIDQYDRDSTIVDFKNGKVR 74 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~ 74 (231)
..+.+|+|++.. .+..+.+.....|++ ++.+..+++..+..+..+.-++..++
T Consensus 64 ~~Dv~Ii~vp~~---~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~ 117 (288)
T 1oi7_A 64 EVDASIIFVPAP---AAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSR 117 (288)
T ss_dssp CCSEEEECCCHH---HHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEecCHH---HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 457778788864 355556666678898 77788899987766666666654444
No 237
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=22.66 E-value=2.4e+02 Score=22.98 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|.+.|++.|.
T Consensus 33 ~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg 89 (301)
T 1xky_A 33 AKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG 89 (301)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCC
Confidence 44667778888888887777774 88999998888765 57777877653
No 238
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=22.56 E-value=2.4e+02 Score=20.85 Aligned_cols=36 Identities=6% Similarity=-0.032 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC
Q psy17587 34 LVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN 70 (231)
Q Consensus 34 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 70 (231)
-++.|.+.|...|+.| ..|-.++..+-.+.+++|..
T Consensus 56 D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 56 DAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHH
Confidence 4678888899999997 56778999999999999964
No 239
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.45 E-value=1.7e+02 Score=19.23 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=33.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEE
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLI 77 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLv 77 (231)
...+|+|.-+.. ...+.+...|...|+.+..... -...++.+.....++++
T Consensus 6 ~~~~ilivdd~~--~~~~~l~~~L~~~g~~v~~~~~------~~~a~~~l~~~~~dlvi 56 (130)
T 3eod_A 6 VGKQILIVEDEQ--VFRSLLDSWFSSLGATTVLAAD------GVDALELLGGFTPDLMI 56 (130)
T ss_dssp TTCEEEEECSCH--HHHHHHHHHHHHTTCEEEEESC------HHHHHHHHTTCCCSEEE
T ss_pred CCCeEEEEeCCH--HHHHHHHHHHHhCCceEEEeCC------HHHHHHHHhcCCCCEEE
Confidence 356788777766 5688889999888887765432 23455556555555544
No 240
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=22.38 E-value=2.4e+02 Score=23.01 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|.+.|++.|.
T Consensus 32 ~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg 88 (303)
T 2wkj_A 32 ASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG 88 (303)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 44677888888888888877774 99999998888765 57788887653
No 241
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=22.28 E-value=2.4e+02 Score=22.95 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|.+.|++.|.
T Consensus 37 ~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg 93 (304)
T 3cpr_A 37 AAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVG 93 (304)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCC
Confidence 44677788888888887777774 89999998888765 57777877653
No 242
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=22.17 E-value=1.7e+02 Score=23.58 Aligned_cols=51 Identities=4% Similarity=0.067 Sum_probs=39.6
Q ss_pred CCCeEEEEcCChh------------HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC
Q psy17587 19 RDSTIVDFKNGKV------------RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN 70 (231)
Q Consensus 19 ~~~~iiiF~~~~~------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 70 (231)
+.+.+|||.|... ..-++.|.+.|+..|+.| .+|-+++.++-.+.+++|..
T Consensus 20 ~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 20 PCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMV-EVKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp SCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHH
T ss_pred cccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEEcCCCHHHHHHHHHHHHH
Confidence 4567777877632 124789999999999997 55678999999999999964
No 243
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=22.05 E-value=2.4e+02 Score=22.71 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|.+.|++.|.
T Consensus 21 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg 77 (289)
T 2yxg_A 21 DGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAG 77 (289)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC
T ss_pred HHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC
Confidence 44667777777788887777664 88888888887754 46777776653
No 244
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=21.98 E-value=1.2e+02 Score=24.05 Aligned_cols=51 Identities=6% Similarity=0.046 Sum_probs=39.2
Q ss_pred CCeEEEEcCChh------------HHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC
Q psy17587 20 DSTIVDFKNGKV------------RLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG 71 (231)
Q Consensus 20 ~~~iiiF~~~~~------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 71 (231)
.+.+|||.|... ..-++.|.+.|+..|+.| ..+-+++..+-.+.+++|...
T Consensus 16 rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred ccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 456677877422 124889999999999997 466789999999999999754
No 245
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=21.53 E-value=78 Score=22.63 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=30.1
Q ss_pred CCCeEEEEcCC----hhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHH
Q psy17587 19 RDSTIVDFKNG----KVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTI 65 (231)
Q Consensus 19 ~~~~iiiF~~~----~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~ 65 (231)
...+|+||+.+ ...-.|..+.+.|...+++...+.=...+..+....
T Consensus 33 ~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~ 83 (135)
T 2wci_A 33 AENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELP 83 (135)
T ss_dssp HHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHH
T ss_pred ccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHH
Confidence 34568888762 122568888889988888766665544555444443
No 246
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=21.48 E-value=2.3e+02 Score=22.98 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEec
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIAT 79 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT 79 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|...|++.|
T Consensus 24 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv 79 (294)
T 3b4u_A 24 DAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGV 79 (294)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC
Confidence 44667777777788887777664 88889988888765 4567777654
No 247
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=21.48 E-value=2.3e+02 Score=22.85 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEec
Q psy17587 34 LVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIAT 79 (231)
Q Consensus 34 ~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT 79 (231)
....+.+++...|..-.++.|. |+.+||.++++... .|...|++.|
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gv 77 (291)
T 3a5f_A 23 KLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGT 77 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC
Confidence 3556666666667766666653 77777777766644 4566666554
No 248
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=21.47 E-value=1.3e+02 Score=21.83 Aligned_cols=51 Identities=6% Similarity=0.046 Sum_probs=37.9
Q ss_pred CCeEEEEcCCh------------hHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCC
Q psy17587 20 DSTIVDFKNGK------------VRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNG 71 (231)
Q Consensus 20 ~~~iiiF~~~~------------~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g 71 (231)
...+|||.|.. ...-++.|.+.|...|+.| ..|..++.++-.+.+++|...
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHHHHh
Confidence 45667776631 1234788999999999996 456679999999999999753
No 249
>1naq_A Periplasmic divalent cation tolerance protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; HET: MBO; 1.70A {Escherichia coli} SCOP: d.58.5.2 PDB: 3ah6_A 3aa9_A 3aa8_A 3opk_A
Probab=21.33 E-value=1.1e+02 Score=21.23 Aligned_cols=32 Identities=3% Similarity=0.046 Sum_probs=23.3
Q ss_pred cCCCCeEEEEcCChhHHHHHHHHHHHHHCCCC
Q psy17587 17 YDRDSTIVDFKNGKVRLLVCAIVKELMKAGYP 48 (231)
Q Consensus 17 ~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~ 48 (231)
+.+..-++||++....+.++.|++.|...++-
T Consensus 6 ~~~~~~~~V~tT~p~~e~A~~iA~~Lve~rLA 37 (112)
T 1naq_A 6 SSNTASVVVLCTAPDEATAQDLAAKVLAEKLA 37 (112)
T ss_dssp -CCCCEEEEEEEESSHHHHHHHHHHHHHTTSC
T ss_pred cCCCCEEEEEEecCCHHHHHHHHHHHHhcCeE
Confidence 44456678887665568899999999877654
No 250
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=21.17 E-value=2.4e+02 Score=22.77 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEec
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIAT 79 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT 79 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|...|++.|
T Consensus 21 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv 76 (294)
T 2ehh_A 21 EALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGT 76 (294)
T ss_dssp HHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 34566667776777776666663 77788877777654 4666676654
No 251
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=21.17 E-value=2.1e+02 Score=23.37 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEec
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIAT 79 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT 79 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|.+.|++.|
T Consensus 29 ~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv 84 (309)
T 3fkr_A 29 ASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTT 84 (309)
T ss_dssp HHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 44666777777777776666654 78888888777654 4677777665
No 252
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=21.11 E-value=2.4e+02 Score=23.01 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|.+.|++.|.
T Consensus 33 ~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg 89 (306)
T 1o5k_A 33 ESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG 89 (306)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCC
Confidence 44667778888888887777774 89999998888765 57778887653
No 253
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=20.82 E-value=1.6e+02 Score=19.28 Aligned_cols=49 Identities=14% Similarity=0.035 Sum_probs=29.4
Q ss_pred CCeEEEEcCC----hhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHH
Q psy17587 20 DSTIVDFKNG----KVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDF 68 (231)
Q Consensus 20 ~~~iiiF~~~----~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 68 (231)
..++++|+.+ ...-.|..+...|...++....+.=...+..+....+.+
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 68 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYS 68 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHH
Confidence 3457778751 112458888888888887766665555555555444444
No 254
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.81 E-value=2e+02 Score=19.25 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=31.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEe
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIA 78 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLva 78 (231)
..+|+|.-+.. ...+.+...|...|+.+..... -...++.+.....++++.
T Consensus 6 ~~~iLivdd~~--~~~~~l~~~l~~~g~~v~~~~~------~~~a~~~l~~~~~dlvi~ 56 (140)
T 3grc_A 6 RPRILICEDDP--DIARLLNLMLEKGGFDSDMVHS------AAQALEQVARRPYAAMTV 56 (140)
T ss_dssp CSEEEEECSCH--HHHHHHHHHHHHTTCEEEEECS------HHHHHHHHHHSCCSEEEE
T ss_pred CCCEEEEcCCH--HHHHHHHHHHHHCCCeEEEECC------HHHHHHHHHhCCCCEEEE
Confidence 45677666655 5577788888777777654442 134455555566676655
No 255
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=20.80 E-value=2.4e+02 Score=25.83 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=43.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHHHHC--CCCeeecc--------------------CCC--C---HHHHHHHHHHHhCCC
Q psy17587 20 DSTIVDFKNGKVRLLVCAIVKELMKA--GYPCLSLH--------------------GGI--D---QYDRDSTIVDFKNGK 72 (231)
Q Consensus 20 ~~~iiiF~~~~~~~~~~~l~~~L~~~--~~~~~~lh--------------------g~~--~---~~~R~~~~~~F~~g~ 72 (231)
++.+||.++++ ..+.+|+..|... +..|..+- ... + ...|..++..+.++.
T Consensus 53 ~~~~lvv~~~~--~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~~R~~~l~~L~~~~ 130 (664)
T 1c4o_A 53 GRPALVLAPNK--ILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRR 130 (664)
T ss_dssp TCCEEEEESSH--HHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEecCH--HHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHHHHHHHHHHHHhCC
Confidence 34677789988 6699999999765 22343333 233 2 456888888887776
Q ss_pred ccEEEecCccccccC
Q psy17587 73 VRLLIATSVAARGLD 87 (231)
Q Consensus 73 ~~vLvaT~~~~~Gld 87 (231)
-.|+|+|-.+..|+-
T Consensus 131 ~~ivV~s~~~l~~~~ 145 (664)
T 1c4o_A 131 DVIVVASVSAIYGLG 145 (664)
T ss_dssp CEEEEEEGGGCSCCC
T ss_pred CeEEEecHHHHhcCC
Confidence 667777765555543
No 256
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=20.49 E-value=2.4e+02 Score=22.81 Aligned_cols=48 Identities=8% Similarity=0.234 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|...|++.|.
T Consensus 22 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg 78 (292)
T 2ojp_A 22 ASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG 78 (292)
T ss_dssp HHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 44667777777788887777774 89999998888765 57778886653
No 257
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=20.44 E-value=93 Score=25.97 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=41.4
Q ss_pred CCCeEEEE---cCChhHHHHHHHHHHHHHCC---CCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCcccc
Q psy17587 19 RDSTIVDF---KNGKVRLLVCAIVKELMKAG---YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAAR 84 (231)
Q Consensus 19 ~~~~iiiF---~~~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~ 84 (231)
.++.+|+. +.+- .++...++.|+..| +.+.+.||-++.. ..+.+.+..++-+|+|+....
T Consensus 215 ~gk~viiVDDii~TG--~Tl~~a~~~L~~~Ga~~v~~~~tH~v~s~~----a~~~l~~~~i~~vv~t~tip~ 280 (319)
T 3dah_A 215 EGRTCVIMDDMVDTA--GTLCKAAQVLKERGAKQVFAYATHPVLSGG----AADRIAASALDELVVTDTIPL 280 (319)
T ss_dssp CCSEEEEEEEEESSC--HHHHHHHHHHHHTTCSCEEEEEEEECCCTT----HHHHHHTSSCSEEEEESSSCC
T ss_pred CCCEEEEEecccCch--HHHHHHHHHHHHcCCCEEEEEEEeecCChH----HHHHHHhCCCCEEEEeccccC
Confidence 46677765 3443 45788888888776 4566888877643 455666778888999988643
No 258
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=20.39 E-value=45 Score=27.21 Aligned_cols=49 Identities=6% Similarity=-0.101 Sum_probs=39.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHHHHCCCCeeeccCCCCHHHHHHHHHHHhC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKN 70 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 70 (231)
+.+.+|||+|.. .-++.|.+.|...|+.|. .|.+++.++-.+.+.+|..
T Consensus 42 ~rG~~LIinn~~--~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 42 PLGICLIIDCIG--NETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SSEEEEEEESSC--CCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHT
T ss_pred cceEEEEECCch--HHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 346677788875 337889999999999975 5668999999999999975
No 259
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=20.38 E-value=85 Score=28.01 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=31.5
Q ss_pred CCCeEEEEcCChhHHHHHHHH-HHHHHCCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCccccc----------cC
Q psy17587 19 RDSTIVDFKNGKVRLLVCAIV-KELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARG----------LD 87 (231)
Q Consensus 19 ~~~~iiiF~~~~~~~~~~~l~-~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~~~~G----------ld 87 (231)
...++||.|++. ..++++. +.+...+..+..++++. ..+..+|+|+|.-.-.. +.
T Consensus 234 ~~~~vlil~P~~--~L~~Q~~~~~~~~~~~~~~~~~~~~------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 299 (590)
T 3h1t_A 234 RKPRILFLADRN--VLVDDPKDKTFTPFGDARHKIEGGK------------VVKSREIYFAIYQSIASDERRPGLYKEFP 299 (590)
T ss_dssp SCCCEEEEEC-------------CCTTTCSSEEECCC--------------CCSSCSEEEEEGGGC------CCGGGGSC
T ss_pred CCCeEEEEeCCH--HHHHHHHHHHHHhcchhhhhhhccC------------CCCCCcEEEEEhhhhccccccccccccCC
Confidence 457778788876 6677777 66665565555555432 24567899998643322 33
Q ss_pred CCCCcEEEE
Q psy17587 88 VKHLNLVVN 96 (231)
Q Consensus 88 ip~v~~VI~ 96 (231)
...+++||.
T Consensus 300 ~~~~~lvIi 308 (590)
T 3h1t_A 300 QDFFDLIII 308 (590)
T ss_dssp TTSCSEEEE
T ss_pred CCccCEEEE
Confidence 345667665
No 260
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=20.23 E-value=55 Score=26.73 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCh-hHHHHHHHHHHHHHCCCC-eeeccCCCC
Q psy17587 18 DRDSTIVDFKNGK-VRLLVCAIVKELMKAGYP-CLSLHGGID 57 (231)
Q Consensus 18 ~~~~~iiiF~~~~-~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 57 (231)
.+++.|||||.+. ....+..++..|+..|++ +..+.||+.
T Consensus 105 ~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~ 146 (302)
T 3olh_A 105 GAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLR 146 (302)
T ss_dssp CSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHH
Confidence 4578899999641 001266777888888985 888999864
No 261
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=20.19 E-value=1e+02 Score=22.30 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=26.8
Q ss_pred HHHH-CCCCeeeccCCCCHHHHHHHHHHHhCCCccEEEecCc
Q psy17587 41 ELMK-AGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSV 81 (231)
Q Consensus 41 ~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLvaT~~ 81 (231)
.|.. .|+++..+... +.+-+..+.+..++|+++.+|-|..
T Consensus 43 ~L~e~~Gl~v~~v~k~-~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 43 RIEEATGLTVEKLLSG-PLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp HHHHHHCCCCEECSCG-GGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHhhCceEEEEEec-CCCCcchHHHHHHCCCccEEEEccC
Confidence 3444 57887766532 2134677899999999887776654
No 262
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=20.18 E-value=2.5e+02 Score=23.01 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHh---CCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFK---NGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~---~g~~~vLvaT~ 80 (231)
+....+.+++...|..-.++.|. |+.+||.++++... .|.+.|++.|.
T Consensus 43 ~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg 99 (315)
T 3si9_A 43 KAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAG 99 (315)
T ss_dssp HHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC
Confidence 45667788888888888777775 88999999888764 57788887664
No 263
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=20.08 E-value=95 Score=21.02 Aligned_cols=24 Identities=0% Similarity=-0.014 Sum_probs=12.4
Q ss_pred eEEEEcCChhHHHHHHHHHHHHHCCC
Q psy17587 22 TIVDFKNGKVRLLVCAIVKELMKAGY 47 (231)
Q Consensus 22 ~iiiF~~~~~~~~~~~l~~~L~~~~~ 47 (231)
+|+|.-... .....+...|...++
T Consensus 11 ~iLivdd~~--~~~~~l~~~l~~~~~ 34 (146)
T 3ilh_A 11 SVLLIDDDD--IVNFLNTTIIRMTHR 34 (146)
T ss_dssp EEEEECSCH--HHHHHHHHHHHTTCC
T ss_pred eEEEEeCCH--HHHHHHHHHHHhcCC
Confidence 455444433 345556666655555
No 264
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.06 E-value=1.3e+02 Score=19.88 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=6.5
Q ss_pred HHHHHHHHHHCCCC
Q psy17587 35 VCAIVKELMKAGYP 48 (231)
Q Consensus 35 ~~~l~~~L~~~~~~ 48 (231)
.+.+...|...|+.
T Consensus 16 ~~~l~~~L~~~g~~ 29 (127)
T 3i42_A 16 AETFKELLEMLGFQ 29 (127)
T ss_dssp HHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHcCCC
Confidence 44444444444443
No 265
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=20.04 E-value=2e+02 Score=24.09 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHCCCCeeeccCC------CCHHHHHHHHHHHhCCCccEEEecC
Q psy17587 33 LLVCAIVKELMKAGYPCLSLHGG------IDQYDRDSTIVDFKNGKVRLLIATS 80 (231)
Q Consensus 33 ~~~~~l~~~L~~~~~~~~~lhg~------~~~~~R~~~~~~F~~g~~~vLvaT~ 80 (231)
+....+.+++...|+.-+++.|. |+.+||.++++....|.+.|++.|.
T Consensus 47 ~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpViaGvg 100 (344)
T 2hmc_A 47 DALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVIVGTG 100 (344)
T ss_dssp HHHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEEEecC
Confidence 44667778887888877777664 8999999988884467788887653
No 266
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=20.01 E-value=16 Score=28.77 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=22.5
Q ss_pred hhhhhccccccCCCCeEEEEcCChhHHHHHHHHHHHHHCCCCee
Q psy17587 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCL 50 (231)
Q Consensus 7 ~~~L~~~L~~~~~~~~iiiF~~~~~~~~~~~l~~~L~~~~~~~~ 50 (231)
...|.+.|...-.++++++++... ..+.|.+.|...|..+.
T Consensus 97 ~e~L~~~l~~~~~~~~vL~~rg~~---~~~~L~~~L~~~G~~v~ 137 (229)
T 3p9z_A 97 GKEFVQEIFPLLEKKSVLYLRAKE---IVSSLDTILLEHGIDFK 137 (229)
T ss_dssp ------CCHHHHTTCEEEEEEESS---CSSCHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhhCCCCEEEEECCcc---chHHHHHHHHHCCCeEE
Confidence 344555554333567888776643 24778888888886654
Done!