RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17587
(231 letters)
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 96.9 bits (241), Expect = 9e-25
Identities = 26/159 (16%), Positives = 47/159 (29%), Gaps = 25/159 (15%)
Query: 8 LSLHGGIDQYDRDSTIVDFKNGKVRLLVCA-------IVKELMKAGYPCLSLHGGIDQYD 60
LS G I Y + + K G+ L+ C + +L+ G ++ + G+D
Sbjct: 16 LSTTGEIPFYGKAIPLEVIKGGRH-LIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSV 74
Query: 61 R----------DSTIVDFKNGKVRLLIATSVAARG---LDVKHLNLVVNYDCPNHYEDYV 107
++ G +I + + + P
Sbjct: 75 IPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRT 134
Query: 108 HRCGRTGRAGNKGFAYTFITLEQER---HAGEIIRALEA 143
R GRTGR G G E+ + + +A
Sbjct: 135 QRRGRTGR-GKPGIYRFVAPGERPSGMFDSSVLCECYDA 172
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 86.5 bits (213), Expect = 6e-21
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 35 VCAIVKELMKAGYPCLSLHGGIDQYDR--------DSTIVDFKNGKVRLLIATSVAARGL 86
IV EL+K G G + + + +F G+ +L+ATSV GL
Sbjct: 174 AKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGL 233
Query: 87 DVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFIT 127
DV ++LVV Y+ + R GRTGR G +
Sbjct: 234 DVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMA 273
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 78.4 bits (192), Expect = 7e-19
Identities = 39/119 (32%), Positives = 69/119 (57%)
Query: 38 IVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNY 97
+ +L + +++ + Q +RD+ + +F++G R+LI+T + ARG+DV+ ++LV+NY
Sbjct: 43 LTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINY 102
Query: 98 DCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMW 156
D P + E+Y+HR GR GR G KG A F+T E E+ + +P D+ +
Sbjct: 103 DLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 161
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 78.7 bits (193), Expect = 3e-18
Identities = 23/169 (13%), Positives = 44/169 (26%), Gaps = 10/169 (5%)
Query: 51 SLHGGIDQYDRDSTIVDFKNGKVRLLIATS----VAARGLDVKH-LNLVVNYDCPNHYED 105
GI + F G++ LI T+ RGLD+ + V CP+
Sbjct: 48 KFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS---- 103
Query: 106 YVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWAEDLIVRTF 165
+ + ++ A+E + E L K+ ++
Sbjct: 104 FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 163
Query: 166 CFRAGNKGFAYTFIT-LEQERHAGEIIRALEASGVPIPEDLDKILAEGL 213
+ T ++ + G + D L
Sbjct: 164 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAF 212
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 65.6 bits (159), Expect = 7e-14
Identities = 19/97 (19%), Positives = 34/97 (35%)
Query: 46 GYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYED 105
G LH I +R I D + GK +L+ ++ GLD+ ++LV D
Sbjct: 55 GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFL 114
Query: 106 YVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALE 142
R A + + + + A++
Sbjct: 115 RSERSLIQTIGRAARNANGHVIMYADTITKSMEIAIQ 151
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 63.8 bits (154), Expect = 1e-13
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 58 QYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAG 117
Q R+ I FK K+R+LIAT V +RG+DV LN V+NY P + E Y+HR GRTGRAG
Sbjct: 64 QSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAG 123
Query: 118 NKGFAYTFITLEQERHAGEIIRALEASGVPIPE 150
KG A + I + + I RA+ + I +
Sbjct: 124 KKGKAISIINRREYKKLRYIERAM---KLKIKK 153
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 63.4 bits (153), Expect = 3e-13
Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 5/115 (4%)
Query: 47 YPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYEDY 106
+ S+HG + Q +R+S + +F++G R+LI+T V ARGLDV ++L++NYD PN+ E Y
Sbjct: 59 FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELY 118
Query: 107 VHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWAEDLI 161
+HR GR+GR G KG A F+ + R +I + +P ++ DLI
Sbjct: 119 IHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV-----ADLI 168
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 62.2 bits (150), Expect = 1e-12
Identities = 16/88 (18%), Positives = 34/88 (38%)
Query: 41 ELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCP 100
+ + ++ + +R+ + F+ G+ R ++++ V G+DV N+ V
Sbjct: 107 YRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGS 166
Query: 101 NHYEDYVHRCGRTGRAGNKGFAYTFITL 128
+Y+ R GR R L
Sbjct: 167 GSAREYIQRLGRILRPSKGKKEAVLYEL 194
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 59.7 bits (143), Expect = 6e-12
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 14 IDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKV 73
+ + I+ F N R+ + A K++ GY C H + Q +R+ +F+ GKV
Sbjct: 27 FSKLQINQAII-FCNSTNRVELLA--KKITDLGYSCYYSHARMKQQERNKVFHEFRQGKV 83
Query: 74 RLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERH 133
R L+ + + RG+D++ +N+V+N+D P E Y+HR GR+GR G+ G A I +
Sbjct: 84 RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN 143
Query: 134 AGEIIRALEASGVPIPEDLDKMW--AED 159
+I + L IP +DK AE+
Sbjct: 144 LYKIEQELGTEIAAIPATIDKSLYVAEN 171
Score = 41.6 bits (96), Expect = 2e-05
Identities = 15/59 (25%), Positives = 20/59 (33%)
Query: 151 DLDKMWAEDLIVRTFCFRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKIL 209
D K L R G+ G A I + +I + L IP +DK L
Sbjct: 108 DFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSL 166
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 58.2 bits (140), Expect = 1e-11
Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 7 CLSLHGGIDQYDRDSTIVDFKNGKVRLLVCA-------IVKELMKAGYPCLSLHGGIDQY 59
LS G I Y + + K G+ L+ C + +L+ G ++ + G+D
Sbjct: 14 ALSTTGEIPFYGKAIPLEVIKGGRH-LIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS 72
Query: 60 DRDSTIVDFKNGKVRLLIATSVAARGLDVKH---LNLVVNYDCPNHYEDYVHRCGRTGRA 116
+++AT G ++ + P R GRTGR
Sbjct: 73 V-------IPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR- 124
Query: 117 GNKGFAYTFIT 127
G G Y F+
Sbjct: 125 GKPG-IYRFVA 134
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 57.3 bits (137), Expect = 5e-11
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 14 IDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKV 73
I+ + R + E+++ G+ L G + R S I F++GK
Sbjct: 27 YGSITIGQAIIFCQT---RRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE 83
Query: 74 RLLIATSVAARGLDVKHLNLVVNYDCPNH------YEDYVHRCGRTGRAGNKGFAYTFIT 127
++LI T+V ARG+DVK + +VVN+D P YE Y+HR GRTGR G KG A+ I
Sbjct: 84 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIE 143
Query: 128 LEQERHAGEIIRALEASGVPIPEDLDKMWAED 159
+++ +I I + + AED
Sbjct: 144 VDELPSLMKIQDHF---NSSIKQ----LNAED 168
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 58.4 bits (140), Expect = 7e-11
Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 23/114 (20%)
Query: 35 VCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVK----- 89
I L K G + L + + + ++ T ++ G + K
Sbjct: 191 GNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANFKAERVI 246
Query: 90 ----HLNLVVNYDCPNH----------YEDYVHRCGRTGRAGNKGFAYTFITLE 129
+ V+ D + R GR GR E
Sbjct: 247 DPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGE 300
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 50.8 bits (120), Expect = 1e-08
Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 14 IDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKV 73
+D + + ++ F R + A + +P +++H G+ Q +R S FK+ +
Sbjct: 22 LDVLEFNQVVI-FVKSVQRCIALAQLLVEQN--FPAIAIHRGMPQEERLSRYQQFKDFQR 78
Query: 74 RLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERH 133
R+L+AT++ RG+D++ +N+ NYD P + Y+HR R GR G KG A TF++ E +
Sbjct: 79 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 138
Query: 134 -AGEIIRALEASGVPIPEDLDK 154
++ E + +P+++D
Sbjct: 139 ILNDVQDRFEVNISELPDEIDI 160
Score = 35.4 bits (80), Expect = 0.002
Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 13/163 (7%)
Query: 55 GIDQY-------DRDSTIVDF--KNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNHYED 105
G+ QY +++ + D +++I R + + L + N+ +
Sbjct: 1 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 60
Query: 106 YVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKMWAEDLIVRTF 165
+ K F + G I + + D+ + L
Sbjct: 61 MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN---YDMPEDSDTYLHRVAR 117
Query: 166 CFRAGNKGFAYTFITLEQERH-AGEIIRALEASGVPIPEDLDK 207
R G KG A TF++ E + ++ E + +P+++D
Sbjct: 118 AGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI 160
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 51.2 bits (121), Expect = 1e-08
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 14 IDQYDRDSTIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKV 73
+ + S I+ + N + + V L G + H G++ R F+ +
Sbjct: 25 VQEQRGKSGII-YCNSRAK--VEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDL 81
Query: 74 RLLIATSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERH 133
++++AT G++ ++ VV++D P + E Y GR GR G A F
Sbjct: 82 QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 141
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 49.8 bits (118), Expect = 3e-08
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 43 MKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCPNH 102
+ + +HG + Q ++D +++F G+ +L++T+V G+DV N++V +
Sbjct: 61 VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERF 120
Query: 103 YEDYVHR-CGRTGRAGNKGFAYTFI-TLEQERHAGEIIRALEASGVPIPE-DLD 153
+H+ GR GR G + + + + + +E L G I E DL
Sbjct: 121 GLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFFTLNTDGFKIAEYDLK 174
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 45.3 bits (106), Expect = 1e-06
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 39 VKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVV--- 95
+ E ++ G H G+ R F+ G +++++AT A G+++ ++V
Sbjct: 89 LAECVRKGAAFH--HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSL 146
Query: 96 ----NYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEA 143
Y +Y GR GR G I + + + R +
Sbjct: 147 YRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFG 198
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 39.6 bits (92), Expect = 1e-04
Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 22/126 (17%)
Query: 37 AIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLV-- 94
+ L KAG + L+ + K K ++AT +A G ++ ++
Sbjct: 51 VMAASLRKAGKSVVVLNRKT----FEREYPTIKQKKPDFILATDIAEMGANLCVERVLDC 106
Query: 95 ------VNYDCPNHYEDYV----------HRCGRTGRAGNKGFAYTFITLEQERHAGEII 138
V D R GR GR N+ + + + +
Sbjct: 107 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHV 166
Query: 139 RALEAS 144
LEAS
Sbjct: 167 CWLEAS 172
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 36.8 bits (85), Expect = 7e-04
Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 13/115 (11%)
Query: 38 IVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNY 97
I K L G P L+ + + + G + IAT++A RG D+K V
Sbjct: 50 ISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKEL 107
Query: 98 D--------CPNHYEDYVHRCGRTGRAGNKGFAYTFITLEQE---RHAGEIIRAL 141
GR+GR G+ G ++++E E R E A+
Sbjct: 108 GGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTMAM 162
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 166
Score = 28.3 bits (62), Expect = 0.56
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 106 YVHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKM 155
+ G T G + I + A E ALEA+GV L +
Sbjct: 109 VGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADI 158
>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 208
Score = 27.2 bits (59), Expect = 1.4
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 21 STIVDFKNGKVRLLVCAIVKELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLL 76
+T + + IV++L L L G ST++D R+L
Sbjct: 138 ATSANISGKPPSPRLEEIVRDLDAV---DLVLDAGDCLDMEPSTVIDLTVNPPRVL 190
Score = 26.8 bits (58), Expect = 2.1
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 10 LHGGIDQYDRDSTIVDFKNGKVRLL 34
L G ST++D R+L
Sbjct: 166 LDAGDCLDMEPSTVIDLTVNPPRVL 190
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA
{Helicobacter pylori [TaxId: 210]}
Length = 170
Score = 27.1 bits (59), Expect = 1.6
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 148 IPEDLDKMWAEDLIVRTFCFRAGNKGFAYTFIT-LEQERHAGEIIRALEA 196
I D D ++ E + +R N + I L R+A E++R ++A
Sbjct: 109 ISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA 158
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 176
Score = 26.7 bits (58), Expect = 1.8
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 107 VHRCGRTGRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKM 155
G T G + I + A E I AL+++GV + ++
Sbjct: 114 SFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQL 162
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 27.2 bits (59), Expect = 1.9
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 36 CAIVKELMKAGYPCLSLHGGIDQYDRDSTI---VDFKNGKVRLLIATSVAARGLDVKHLN 92
K Y + L G + R + + + + ++++ GL++ N
Sbjct: 132 DLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGAN 191
Query: 93 LVVNYDCPNHYEDYVHRCGRTGRAGNKG--FAYTFIT 127
+V +D + + R R G K + Y ++
Sbjct: 192 RLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 228
>d1ikpa2 d.166.1.1 (A:395-606) Exotoxin A, C-terminal domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 212
Score = 26.2 bits (57), Expect = 3.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 157 AEDLIVRTFCFRAGNKGFAYTFITLEQERHAGEIIRALEASGVPIPEDLDKI 208
++R + R+ GF T +TL AGE+ R + G P+P LD I
Sbjct: 100 RNGALLRVYVPRSSLPGFYRTSLTLAAPEAAGEVERLI---GHPLPLRLDAI 148
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae
[TaxId: 666]}
Length = 178
Score = 25.8 bits (56), Expect = 4.0
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 8/109 (7%)
Query: 129 EQERHAGEIIRALEASG---VPIPED-----LDKMWAEDLIVRTFCFRAGNKGFAYTFIT 180
++ +I + AS L+KM + L+ + G IT
Sbjct: 12 TRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSIT 71
Query: 181 LEQERHAGEIIRALEASGVPIPEDLDKILAEGLVWLRDYKQRVDQRIAR 229
GE A E K++A + Y+ ++ + +
Sbjct: 72 QAGRSALGEWFDQPTAHPTVRDEFSAKLMACSVQSAEPYRLQLAELVEE 120
>d1aora2 d.152.1.1 (A:1-210) Aldehyde ferredoxin oxidoreductase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 210
Score = 25.4 bits (56), Expect = 6.0
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 41 ELMKAGYPCLSLHGGIDQYDRDSTIVDFKNGKVRLLIATSVAARGLDVKHLNLVVNYDCP 100
EL AGY + + G + ++ I K+ + + A+ + G V +
Sbjct: 101 ELKFAGYDAIVVEG---KAEKPVYIY-IKDEHIEIRDASHIW--GKKVSETEATIR---- 150
Query: 101 NHYEDYVHRCGRTGRAGNKGFAYTFITLEQERHAG 135
+ G AG + I + R AG
Sbjct: 151 KEVGSEKVKIASIGPAGENLVKFAAIMNDGHRAAG 185
>d1fjna_ g.3.7.3 (A:) Defensin MGD-1 {Mediterranean mussel (Mytilus
galloprovincialis) [TaxId: 29158]}
Length = 39
Score = 23.3 bits (50), Expect = 6.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 97 YDCPNHYEDYVHRCGRTGRAG 117
+ CPN+Y+ + H GR G
Sbjct: 2 FGCPNNYQCHRHCKSIPGRCG 22
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii
[TaxId: 5861]}
Length = 170
Score = 24.8 bits (53), Expect = 7.2
Identities = 14/110 (12%), Positives = 25/110 (22%), Gaps = 12/110 (10%)
Query: 99 CPNHYEDYVHRCGRTGRAGNKGFAY---TFITLEQERHAGEIIRALEASGVPIPEDLDKM 155
CP+ + + T + + + D+ K
Sbjct: 43 CPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKS 102
Query: 156 WAEDL---IVRTFCFRA------GNKGFAYTFITLEQERHAGEIIRALEA 196
A + RA L R EI+R ++A
Sbjct: 103 IARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA 152
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 344
Score = 25.2 bits (54), Expect = 8.7
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 69 KNGKVRLLIA------TSVAARGLDVKHLNLVVNYDCPNHYEDYVHRCGRT-GRAGNK 119
++ +R+ I T++ + + ++V+ + Y G GR N+
Sbjct: 27 QSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVANR 84
>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha
subunit, C-terminal domain {Pseudomonas fragi [TaxId:
296]}
Length = 124
Score = 24.4 bits (52), Expect = 9.9
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 96 NYDCPNHYEDYVHRCGRTGRAGNKGF 121
D D ++ R G+ KGF
Sbjct: 68 MKDDRRSAIDALYEAKRLGQKNGKGF 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.142 0.431
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 944,136
Number of extensions: 46271
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 50
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)