BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17588
(62 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical
Ubiquitin-Conjugating Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical
Ubiquitin-Conjugating Enzyme, Loc55284
Length = 136
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 42/59 (71%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
++L +PPPGM ++ + ++ W + M+GA GTLY+GE+FQL FKF +YPFDSP+
Sbjct: 32 LALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQV 90
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
Length = 136
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
+ +K PP +D + N+ +W + G E T+Y E ++++ F YP P
Sbjct: 31 NFLKNPPINCTIDVHPS--NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPP 84
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L+K+ PPG+ V K+E N+ +W ++G T Y F + +F YP P+ T
Sbjct: 16 LIKDSPPGI-VAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLT 72
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 6 EPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+PPP + N+ W + G G++Y+G F L F P YPF P+ T
Sbjct: 18 DPPP--NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVT 70
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 9 PGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
P + D N+ +W + G E T+Y E ++L+ F YP P
Sbjct: 22 PPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPP 70
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 6 EPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+PPP + N+ W + G G++Y+G F L F P+YPF P+ T
Sbjct: 63 DPPPN--CSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVT 115
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 12 EVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
E+D+ + N W +KG EGT Y+G F L YP++ P+
Sbjct: 42 EIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKI 89
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + GA GT+Y+ ++L +F YP+++P
Sbjct: 58 NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTV 96
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
+L EPPPG + + +N + I + G +GT Y+G ++L+ +YP + P+
Sbjct: 12 NLANEPPPG--IMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKV 67
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
+L EPPPG + + +N + I + G +GT Y+G ++L+ +YP + P+
Sbjct: 12 NLANEPPPG--IMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKV 67
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L ++PP G + + N+ LW + G + T +DG F+L +F YP P
Sbjct: 16 LQQDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPP 68
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPE 58
+L +PP G++V + E++L + ++G EGT Y G F+++ G +P P+
Sbjct: 24 TLTADPPDGIKVFPN--EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPK 78
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 10 GMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
G+E D D L WT + G T+Y+ + L+ + GPKYP P
Sbjct: 59 GLEDDED---MTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP 103
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 10 GMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
G+E D D L WT + G T+Y+ + L+ + GPKYP P
Sbjct: 49 GLEDDED---MTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP 93
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 10 GMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYP 53
G+E D D L WT + G T+Y+ + L+ + GPKYP
Sbjct: 31 GLEDDED---MTLTRWTGMILGPPRTIYENRIYSLKIECGPKYP 71
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L ++PP G V +E N+ W + G EGT ++ F+L +F +YP P
Sbjct: 16 LQEDPPVG--VSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPP 68
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L+ EP PG++ + D E N + + + G + + ++G F+L+ +YP +P+
Sbjct: 17 LLAEPVPGIKAEPD--ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV 71
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L+ EP PG++ + D E N + + + G + + ++G F+L+ +YP +P+
Sbjct: 20 LLAEPVPGIKAEPD--ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV 74
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 155
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L+ EP PG++ + D E N + + + G + + ++G F+L+ +YP +P+
Sbjct: 18 LLAEPVPGIKAEPD--ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV 72
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L+ EP PG++ + D E N + + + G + + ++G F+L+ +YP +P+
Sbjct: 13 LLAEPVPGIKAEPD--ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV 67
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L+ EP PG++ + D E N + + + G + + ++G F+L+ +YP +P+
Sbjct: 15 LLAEPVPGIKAEPD--ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV 69
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 80
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 78
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation
Revealed By A Complex Between Ubiquitin Conjugating
Enzyme Ubc9 And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation
Revealed By A Complex Between Ubiquitin Conjugating
Enzyme Ubc9 And Rangap1
Length = 159
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 76
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 75
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 77
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 75
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 77
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of
E1 In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 75
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 78
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 78
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 78
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
NL W + G +GT ++G F+L+ F YP P+C
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKC 78
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L EPPPG+ DK + ++ + G T Y+ F+L+ +YPF+ P+
Sbjct: 16 LATEPPPGITCWQDKDQ--MDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQI 70
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L +EP G V + E +L W + + G T Y+G F+ + KF YP+ P
Sbjct: 19 LQEEPVEGFRV-TLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPP 72
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L +EP G V + E +L W + + G T Y+G F+ + KF YP+ P
Sbjct: 16 LQEEPVEGFRV-TLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPP 69
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPE 58
L E ++ D ++N + G T Y+G +QL+ K YPF+ P+
Sbjct: 19 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPK 74
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPE 58
L E ++ D ++N + G T Y+G +QL+ K YPF+ P+
Sbjct: 18 LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPK 73
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 22 LNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
LN + + G +GT Y+G ++++ KYPF SP
Sbjct: 50 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSI 87
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 10 GMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
G+E D D L WT + G T Y+ + L+ + GPKYP P
Sbjct: 39 GLEDDED---MTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSV 85
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 10 GMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
G+E D D L WT + G T Y+ + L+ + GPKYP P
Sbjct: 29 GLEDDED---MTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSV 75
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 25 WTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
WT + G + + Y G F L F YPF +P T
Sbjct: 36 WTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVT 71
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 10 GMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
G+E D D L WT + G T Y+ + L+ + GPKYP P
Sbjct: 28 GLEDDED---MTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSV 74
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 10 GMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
G+E D D L WT + G T Y+ + L+ + GPKYP P
Sbjct: 34 GLEDDED---MTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSV 80
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L+ +P PG + ++ + NL + + ++G E + Y+ F+L+ YP ++P+
Sbjct: 15 LVSDPVPG--ITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKV 69
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPE 58
+++ W + G GT Y+G F L P YP++ P+
Sbjct: 73 DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPK 110
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L+ +P PG + ++ + NL + + ++G E + Y+ F+L+ YP ++P+
Sbjct: 15 LVSDPVPG--ITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKV 69
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L+ +P PG + ++ + NL + + ++G E + Y+ F+L+ YP ++P+
Sbjct: 15 LVSDPVPG--ITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKV 69
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L+ +P PG + ++ + NL + + ++G E + Y+ F+L+ YP ++P+
Sbjct: 17 LVSDPVPG--ITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKV 71
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
Length = 152
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 3 LMKEPPPGME-VDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L K+PPP + + SD A N+ +W + + Y + F L+ F P+YPF P
Sbjct: 13 LQKKPPPYLRNLSSDDA--NVLVWHALLLPDQPP-YHLKAFNLRISFPPEYPFKPP 65
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 3 LMKEPPPGME-VDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L K+PPP + + SD A N+ +W + + Y + F L+ F P+YPF P
Sbjct: 16 LQKKPPPYLRNLSSDDA--NVLVWHALLLPDQPP-YHLKAFNLRISFPPEYPFKPP 68
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 12 EVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
++ D ++N + G T Y+G +QL+ K YPF+ P+
Sbjct: 30 QIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKV 77
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 12 EVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
++ D ++N + G T Y+G +QL+ K YPF+ P+
Sbjct: 43 QIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKV 90
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
NL W + G + T+Y+ +++L +F YP+ P
Sbjct: 37 NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPP 73
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 12 EVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
++ D ++N + G T Y+G +QL+ K YPF+ P+
Sbjct: 79 QIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKV 126
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 19 EQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPE 58
+ +L W + + G TLY+G F+ F YP P+
Sbjct: 44 DNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPK 83
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 25 WTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
W + ++G + +++ G FQL F +Y + P
Sbjct: 55 WEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPP 87
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 4 MKE-PPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
MKE PPG V + N+ +W + G T Y+ F+L +F +YP P
Sbjct: 16 MKEDAPPG--VSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHV 70
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 27 IHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPE 58
+ KG EGT Y+ + L + YPF SP
Sbjct: 42 VEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPS 73
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L ++PP G V E N+ W + G + T ++ F+L +F +YP P
Sbjct: 19 LQEDPPAG--VSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTV 73
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L ++PP G V E N+ W + G + T ++ F+L +F +YP P
Sbjct: 16 LQEDPPAG--VSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPP 68
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L K+PP + ++ W + G E + Y G F L F YPF P+
Sbjct: 33 LSKDPP--TNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVN 88
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
+L W + + G T ++G ++L F +YP P+C
Sbjct: 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKC 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,251,783
Number of Sequences: 62578
Number of extensions: 74041
Number of successful extensions: 174
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 73
length of query: 62
length of database: 14,973,337
effective HSP length: 33
effective length of query: 29
effective length of database: 12,908,263
effective search space: 374339627
effective search space used: 374339627
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)