Query psy17588
Match_columns 62
No_of_seqs 116 out of 1065
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 17:28:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417|consensus 99.9 5.3E-26 1.2E-30 131.2 5.6 59 2-62 12-70 (148)
2 COG5078 Ubiquitin-protein liga 99.9 2.4E-24 5.2E-29 125.7 7.1 60 2-62 16-75 (153)
3 KOG0419|consensus 99.9 2.2E-23 4.8E-28 118.7 5.3 60 1-62 14-73 (152)
4 PLN00172 ubiquitin conjugating 99.9 3.6E-22 7.8E-27 115.9 6.8 59 2-62 12-70 (147)
5 PTZ00390 ubiquitin-conjugating 99.9 3.7E-22 8.1E-27 116.4 6.8 59 2-62 13-71 (152)
6 KOG0426|consensus 99.8 3.2E-21 6.9E-26 110.1 4.8 61 1-62 14-74 (165)
7 KOG0425|consensus 99.8 4.3E-21 9.4E-26 111.8 5.3 61 1-62 15-75 (171)
8 PF00179 UQ_con: Ubiquitin-con 99.8 1.1E-20 2.3E-25 108.2 4.7 59 2-62 8-67 (140)
9 cd00195 UBCc Ubiquitin-conjuga 99.8 5.4E-20 1.2E-24 105.5 6.8 59 2-62 10-68 (141)
10 KOG0418|consensus 99.8 4.6E-19 9.9E-24 105.7 5.8 59 2-62 14-75 (200)
11 KOG0421|consensus 99.8 3.4E-19 7.4E-24 103.0 5.1 58 3-62 41-98 (175)
12 smart00212 UBCc Ubiquitin-conj 99.8 8.9E-19 1.9E-23 100.8 6.8 60 2-62 9-68 (145)
13 KOG0424|consensus 99.8 6.3E-19 1.4E-23 101.6 5.3 61 2-62 15-78 (158)
14 KOG0894|consensus 99.8 7.3E-19 1.6E-23 106.8 5.3 58 2-61 16-73 (244)
15 KOG0428|consensus 99.6 6.6E-16 1.4E-20 95.8 3.9 53 6-60 25-77 (314)
16 KOG0427|consensus 99.6 5.8E-15 1.3E-19 84.4 6.0 58 2-62 26-83 (161)
17 KOG0416|consensus 99.5 8.6E-15 1.9E-19 86.5 4.5 52 9-62 18-69 (189)
18 KOG0422|consensus 99.5 2E-14 4.3E-19 82.7 3.2 59 2-62 13-71 (153)
19 KOG0423|consensus 99.4 1.1E-13 2.5E-18 82.3 2.0 58 2-61 21-78 (223)
20 KOG0420|consensus 99.4 1.1E-12 2.4E-17 77.6 6.0 56 6-62 41-98 (184)
21 KOG0896|consensus 99.1 1.3E-10 2.7E-15 66.6 4.8 42 21-62 37-78 (138)
22 KOG0429|consensus 99.1 3.3E-10 7.2E-15 69.6 6.0 57 3-62 31-89 (258)
23 KOG0895|consensus 99.1 5.6E-11 1.2E-15 84.4 2.5 58 3-62 863-920 (1101)
24 KOG0895|consensus 99.0 1.1E-09 2.3E-14 78.1 6.1 59 2-62 293-351 (1101)
25 PF05773 RWD: RWD domain; Int 96.6 0.0064 1.4E-07 32.7 4.2 40 22-61 29-70 (113)
26 smart00591 RWD domain in RING 95.7 0.017 3.7E-07 30.8 3.2 23 39-61 40-62 (107)
27 PF14461 Prok-E2_B: Prokaryoti 94.8 0.058 1.3E-06 30.7 3.5 24 38-61 34-57 (133)
28 PF05743 UEV: UEV domain; Int 94.0 0.11 2.5E-06 29.2 3.5 37 21-61 31-69 (121)
29 PF14462 Prok-E2_E: Prokaryoti 92.2 0.96 2.1E-05 25.8 5.6 40 21-61 22-63 (122)
30 KOG4018|consensus 90.2 0.86 1.9E-05 28.3 4.3 35 25-60 33-69 (215)
31 PF08694 UFC1: Ubiquitin-fold 89.8 0.32 7E-06 28.7 2.2 19 42-60 77-95 (161)
32 cd00421 intradiol_dioxygenase 87.4 1.1 2.3E-05 25.9 3.3 24 39-62 65-89 (146)
33 KOG0897|consensus 85.8 0.68 1.5E-05 26.3 1.8 20 41-60 12-31 (122)
34 cd03457 intradiol_dioxygenase_ 85.0 1.6 3.5E-05 26.4 3.3 25 38-62 85-109 (188)
35 cd03459 3,4-PCD Protocatechuat 83.6 2.1 4.5E-05 25.2 3.3 24 39-62 72-100 (158)
36 KOG0309|consensus 82.5 4.4 9.5E-05 30.0 5.0 37 25-62 451-489 (1081)
37 TIGR02423 protocat_alph protoc 80.9 2.8 6E-05 25.6 3.2 25 38-62 95-124 (193)
38 PF06113 BRE: Brain and reprod 79.5 3 6.4E-05 27.6 3.2 23 40-62 306-328 (333)
39 cd03463 3,4-PCD_alpha Protocat 77.2 4.3 9.3E-05 24.6 3.2 24 39-62 92-120 (185)
40 KOG3357|consensus 71.5 7.1 0.00015 22.8 3.1 39 22-60 50-98 (167)
41 COG3866 PelB Pectate lyase [Ca 69.0 13 0.00029 24.6 4.2 37 24-61 198-238 (345)
42 TIGR02439 catechol_proteo cate 68.1 8.8 0.00019 24.9 3.2 25 38-62 179-221 (285)
43 cd03464 3,4-PCD_beta Protocate 67.8 9.2 0.0002 23.8 3.2 24 39-62 122-152 (220)
44 TIGR02422 protocat_beta protoc 66.0 10 0.00023 23.6 3.2 24 39-62 117-147 (220)
45 KOG2391|consensus 64.7 11 0.00024 25.3 3.2 36 21-60 51-88 (365)
46 cd03461 1,2-HQD Hydroxyquinol 64.2 12 0.00025 24.2 3.2 25 38-62 171-213 (277)
47 cd03460 1,2-CTD Catechol 1,2 d 63.5 12 0.00026 24.2 3.2 25 38-62 175-217 (282)
48 TIGR02438 catachol_actin catec 62.1 14 0.0003 23.9 3.3 25 38-62 183-225 (281)
49 PF06113 BRE: Brain and reprod 60.7 16 0.00036 24.2 3.5 35 21-61 52-86 (333)
50 PF11619 P53_C: Transcription 57.0 26 0.00057 18.0 3.3 24 20-50 2-25 (71)
51 TIGR02465 chlorocat_1_2 chloro 56.8 20 0.00043 22.7 3.3 25 38-62 149-191 (246)
52 PF15572 Imm26: Immunity prote 55.1 14 0.00031 20.2 2.2 25 32-61 7-31 (96)
53 PF09458 H_lectin: H-type lect 54.8 24 0.00051 17.4 2.9 20 41-61 2-21 (72)
54 cd03458 Catechol_intradiol_dio 53.8 23 0.0005 22.6 3.3 25 38-62 155-197 (256)
55 cd03462 1,2-CCD chlorocatechol 53.6 23 0.0005 22.5 3.2 25 38-62 150-192 (247)
56 KOG4445|consensus 53.4 20 0.00044 23.8 3.0 22 40-61 45-66 (368)
57 PF04881 Adeno_GP19K: Adenovir 52.8 21 0.00045 20.8 2.7 30 19-48 44-74 (139)
58 KOG4795|consensus 51.0 21 0.00046 22.9 2.7 22 40-62 55-76 (264)
59 COG2819 Predicted hydrolase of 50.3 33 0.00073 22.0 3.6 28 34-61 15-44 (264)
60 PHA00458 single-stranded DNA-b 45.9 35 0.00076 21.6 3.1 20 36-55 33-52 (233)
61 PF09765 WD-3: WD-repeat regio 45.6 15 0.00033 23.7 1.6 35 19-59 122-156 (291)
62 PF08872 KGK: KGK domain; Int 45.0 56 0.0012 18.3 3.9 24 25-48 67-92 (114)
63 cd05845 Ig2_L1-CAM_like Second 43.2 45 0.00098 17.9 3.0 23 37-61 16-38 (95)
64 PF00775 Dioxygenase_C: Dioxyg 42.4 15 0.00033 22.1 1.1 25 38-62 82-124 (183)
65 KOG0805|consensus 41.7 9.6 0.00021 24.8 0.2 45 11-61 198-245 (337)
66 COG4957 Predicted transcriptio 39.4 16 0.00035 21.4 0.9 18 41-58 103-120 (148)
67 KOG1814|consensus 38.0 30 0.00066 23.8 2.1 18 42-59 76-94 (445)
68 PF06675 DUF1177: Protein of u 37.6 32 0.0007 22.2 2.1 28 32-59 180-207 (276)
69 PF08084 PROCT: PROCT (NUC072) 37.4 15 0.00032 21.1 0.5 42 6-54 56-97 (125)
70 PF08675 RNA_bind: RNA binding 35.0 40 0.00086 18.2 1.9 20 31-52 1-20 (87)
71 PF14457 Prok-E2_A: Prokaryoti 33.4 39 0.00084 20.0 1.9 17 44-60 57-73 (162)
72 PF09606 Med15: ARC105 or Med1 33.2 14 0.00031 27.2 0.0 18 44-61 718-735 (799)
73 PF04314 DUF461: Protein of un 30.3 86 0.0019 17.0 2.9 26 25-50 78-103 (110)
74 cd08056 MPN_PRP8 Mpr1p, Pad1p 29.0 55 0.0012 20.9 2.1 26 25-52 214-239 (252)
75 KOG1976|consensus 28.6 31 0.00068 23.1 1.0 19 37-55 306-324 (391)
76 cd05727 Ig2_Contactin-2-like S 26.1 1.2E+02 0.0025 16.3 2.8 25 35-61 14-38 (96)
77 PF15586 Imm47: Immunity prote 25.6 1.3E+02 0.0029 16.8 3.6 31 18-49 22-52 (116)
78 PF03366 YEATS: YEATS family; 24.8 1.2E+02 0.0026 15.9 5.0 32 23-54 2-33 (84)
79 PF11819 DUF3338: Domain of un 24.3 43 0.00093 19.6 0.9 14 47-60 68-85 (138)
80 cd02860 Pullulanase_N_term Pul 23.4 1.3E+02 0.0027 15.7 3.2 25 21-49 45-69 (100)
81 cd02848 Chitinase_N_term Chiti 22.6 72 0.0016 17.8 1.6 11 38-48 78-88 (106)
82 PF15597 Imm36: Immunity prote 22.4 1.5E+02 0.0033 16.4 3.4 26 19-50 28-53 (101)
83 PF14455 Metal_CEHH: Predicted 22.2 1.2E+02 0.0026 18.3 2.5 20 42-62 55-74 (177)
84 PHA03022 hypothetical protein; 21.5 1.1E+02 0.0024 19.8 2.4 25 27-52 17-41 (335)
85 PF11386 VERL: Vitelline envel 21.5 1.4E+02 0.0031 15.7 2.7 20 38-57 6-25 (78)
86 COG2847 Copper(I)-binding prot 21.4 1.9E+02 0.0042 17.1 4.0 28 24-51 104-131 (151)
87 PF14501 HATPase_c_5: GHKL dom 21.1 91 0.002 16.2 1.8 13 37-49 88-100 (100)
88 KOG1834|consensus 21.0 43 0.00094 24.8 0.6 38 23-60 445-482 (952)
89 PF06122 TraH: Conjugative rel 20.9 54 0.0012 21.7 1.0 32 29-60 19-52 (361)
90 KOG1047|consensus 20.8 1.2E+02 0.0026 21.9 2.7 27 35-62 248-277 (613)
91 PF02922 CBM_48: Carbohydrate- 20.8 1.3E+02 0.0028 14.9 3.6 27 21-50 47-74 (85)
92 PF09943 DUF2175: Uncharacteri 20.8 1.3E+02 0.0028 16.7 2.3 20 24-45 2-21 (101)
93 PF07547 RSD-2: RSD-2 N-termin 20.6 1.6E+02 0.0034 15.7 2.7 27 23-49 17-44 (84)
94 PF13026 DUF3887: Protein of u 20.0 1.1E+02 0.0023 16.9 1.9 25 24-51 73-97 (101)
No 1
>KOG0417|consensus
Probab=99.93 E-value=5.3e-26 Score=131.21 Aligned_cols=59 Identities=32% Similarity=0.710 Sum_probs=56.6
Q ss_pred CcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
+|++++++||++.+. ++|+++|+++|.||.+|+||||+|++.|.||++||++||+|+|+
T Consensus 12 ~l~~dp~~~~~~~~~--~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~ 70 (148)
T KOG0417|consen 12 DLLRDPPPGCSAGPV--GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFL 70 (148)
T ss_pred HHhcCCCCCCccCCC--CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEee
Confidence 568899999999987 99999999999999999999999999999999999999999995
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.4e-24 Score=125.68 Aligned_cols=60 Identities=33% Similarity=0.726 Sum_probs=55.6
Q ss_pred CcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
+|+++++++|++.+. +++|+++|+++|.||++|+|+||+|++.|.||++||++||+|+|.
T Consensus 16 ~l~~~~~~~~~a~p~-~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~ 75 (153)
T COG5078 16 KLQKDPPPGISAGPV-DDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFT 75 (153)
T ss_pred HHhcCCCCceEEEEC-CCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeec
Confidence 577889999999998 233999999999999999999999999999999999999999995
No 3
>KOG0419|consensus
Probab=99.89 E-value=2.2e-23 Score=118.66 Aligned_cols=60 Identities=27% Similarity=0.582 Sum_probs=57.6
Q ss_pred CCcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 1 ~~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
|+|+++++.||++.|. ++|++.|.++|+||.+|+|+||+|+|.|.|+++||.+||.|+|.
T Consensus 14 krlqedpp~gisa~P~--~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFv 73 (152)
T KOG0419|consen 14 KRLQEDPPAGISAAPV--ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFV 73 (152)
T ss_pred HHhhcCCCCCccCCCC--ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEee
Confidence 4688999999999999 99999999999999999999999999999999999999999994
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.87 E-value=3.6e-22 Score=115.88 Aligned_cols=59 Identities=32% Similarity=0.680 Sum_probs=55.8
Q ss_pred CcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
+|++++++++++.+. ++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.
T Consensus 12 ~l~~~~~~~~~~~~~--~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 70 (147)
T PLN00172 12 DLLKDPPSNCSAGPS--DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFT 70 (147)
T ss_pred HHHhCCCCCeEEEEC--CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEe
Confidence 567889999999998 88999999999999999999999999999999999999999994
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.87 E-value=3.7e-22 Score=116.38 Aligned_cols=59 Identities=31% Similarity=0.714 Sum_probs=55.6
Q ss_pred CcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
+|++++++||.+.+. ++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.
T Consensus 13 ~l~~~~~~~i~~~~~--~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~ 71 (152)
T PTZ00390 13 NLANDPPPGIKAEPD--PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFL 71 (152)
T ss_pred HHHhCCCCCeEEEEC--CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEe
Confidence 467788999999998 88999999999999999999999999999999999999999994
No 6
>KOG0426|consensus
Probab=99.84 E-value=3.2e-21 Score=110.14 Aligned_cols=61 Identities=26% Similarity=0.535 Sum_probs=57.8
Q ss_pred CCcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 1 ~~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
|+|..++++||.+.|. +++|.+.|.|.|.||++|+|+||.|-.++.||.+||.+||+++|.
T Consensus 14 kqLt~~~P~GIvAgP~-~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ft 74 (165)
T KOG0426|consen 14 KQLTLNPPEGIVAGPI-NEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFT 74 (165)
T ss_pred HHHccCCCCcceeCCC-CccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeee
Confidence 4678899999999998 699999999999999999999999999999999999999999984
No 7
>KOG0425|consensus
Probab=99.84 E-value=4.3e-21 Score=111.75 Aligned_cols=61 Identities=28% Similarity=0.565 Sum_probs=57.1
Q ss_pred CCcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 1 ~~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
++|++.+..|+++... ++.|++.|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.
T Consensus 15 k~L~~~pv~gf~~glv-d~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~ 75 (171)
T KOG0425|consen 15 KELQEEPVEGFSVGLV-DDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFT 75 (171)
T ss_pred HHHhcCCCCccccccc-cCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeee
Confidence 4678899999999998 477999999999999999999999999999999999999999994
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.82 E-value=1.1e-20 Score=108.22 Aligned_cols=59 Identities=39% Similarity=0.829 Sum_probs=53.1
Q ss_pred CcccCCCCCeEEeecCCCC-CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEPPPGMEVDSDKAEQ-NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~-~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
+++++++.|+.+.+. ++ |+.+|+++|.||++|+|+||.|+++|.||++||++||+|+|.
T Consensus 8 ~l~~~~~~~~~~~~~--~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~ 67 (140)
T PF00179_consen 8 ELQKNPPPGISVQPS--EDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFL 67 (140)
T ss_dssp HHHHSHTTTEEEEEE--STTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEES
T ss_pred HHhhCCCCCEEEEEC--CCCChheEEEEEeccCccceecccccccccccccccccccccccc
Confidence 466789999999998 54 999999999999999999999999999999999999999995
No 9
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.82 E-value=5.4e-20 Score=105.49 Aligned_cols=59 Identities=34% Similarity=0.701 Sum_probs=55.4
Q ss_pred CcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
+++++++.|+++.+. ++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.
T Consensus 10 ~l~~~~~~~~~v~~~--~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~ 68 (141)
T cd00195 10 DLKKDPPSGISAEPV--EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFV 68 (141)
T ss_pred HHHhCCCCCeEEEEC--CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEe
Confidence 567788899999998 77999999999999999999999999999999999999999993
No 10
>KOG0418|consensus
Probab=99.78 E-value=4.6e-19 Score=105.72 Aligned_cols=59 Identities=31% Similarity=0.586 Sum_probs=53.0
Q ss_pred CcccCC---CCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEP---PPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~---~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
++.+++ -.||.+... ++|+.+.+++|.||++|||+||.|.+.|.+|++||++||+|+|.
T Consensus 14 ~v~~~~eisq~~I~ve~v--n~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~ 75 (200)
T KOG0418|consen 14 EVLDDPEISQAGIIVEMV--NENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFI 75 (200)
T ss_pred HhccChhhhhcceEEEEc--cCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeee
Confidence 344455 578999998 78999999999999999999999999999999999999999983
No 11
>KOG0421|consensus
Probab=99.78 E-value=3.4e-19 Score=102.96 Aligned_cols=58 Identities=28% Similarity=0.618 Sum_probs=54.6
Q ss_pred cccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 3 l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
|.....+||++.|+ +||++.|.++|.||.+|.|+|-.|++.+.||++||+.||+|+|.
T Consensus 41 Lmms~~~gISAFP~--~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFl 98 (175)
T KOG0421|consen 41 LMMSNTPGISAFPE--SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFL 98 (175)
T ss_pred HHhcCCCCcccCcC--cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEee
Confidence 45677899999998 88999999999999999999999999999999999999999994
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.78 E-value=8.9e-19 Score=100.82 Aligned_cols=60 Identities=40% Similarity=0.780 Sum_probs=54.3
Q ss_pred CcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
+++++++.|+.+.+. .++|+++|+++|.||++|+|+||+|++.|.||++||++||+|+|.
T Consensus 9 ~~~~~~~~~~~v~~~-~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~ 68 (145)
T smart00212 9 ELLKDPPPGISAYPV-DEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFI 68 (145)
T ss_pred HHHhCCCCCeEEEEC-CCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEe
Confidence 466788899999887 234999999999999999999999999999999999999999984
No 13
>KOG0424|consensus
Probab=99.77 E-value=6.3e-19 Score=101.56 Aligned_cols=61 Identities=30% Similarity=0.557 Sum_probs=55.2
Q ss_pred CcccCCCCCeEEeecCCC---CCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEPPPGMEVDSDKAE---QNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~---~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
.+.++.+-|+.+.|.... .|++.|.|.|-|+.+|+|+||.|.+++.|+++||++||+++|+
T Consensus 15 ~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 15 KWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred HHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 467889999999987433 3899999999999999999999999999999999999999995
No 14
>KOG0894|consensus
Probab=99.77 E-value=7.3e-19 Score=106.84 Aligned_cols=58 Identities=31% Similarity=0.618 Sum_probs=55.2
Q ss_pred CcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEe
Q psy17588 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F 61 (62)
.|+++|+++|.+.|. ++|+.+||.+|.||++|||+||.|+.++.||.+||++||.|+.
T Consensus 16 ~l~k~Pv~~i~A~P~--p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~M 73 (244)
T KOG0894|consen 16 ALCKDPVPYIVARPN--PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITM 73 (244)
T ss_pred HHHhCCchhhccCCC--ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEE
Confidence 468899999999998 9999999999999999999999999999999999999999874
No 15
>KOG0428|consensus
Probab=99.60 E-value=6.6e-16 Score=95.80 Aligned_cols=53 Identities=21% Similarity=0.478 Sum_probs=48.9
Q ss_pred CCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEE
Q psy17588 6 EPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60 (62)
Q Consensus 6 ~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~ 60 (62)
+|...+-+.+. +||+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+.
T Consensus 25 ~Ptd~yha~pl--EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~i 77 (314)
T KOG0428|consen 25 DPTDHYHAQPL--EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSII 77 (314)
T ss_pred Cchhhhhhccc--hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEE
Confidence 66666777887 999999999999999999999999999999999999999874
No 16
>KOG0427|consensus
Probab=99.58 E-value=5.8e-15 Score=84.42 Aligned_cols=58 Identities=38% Similarity=0.741 Sum_probs=54.6
Q ss_pred CcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
+++.++++|+.... .+|+..|.+.+.|.++|.|+|.+|.|.+.||+.||++.|+|.|.
T Consensus 26 e~q~~pP~G~~~~v---~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~ 83 (161)
T KOG0427|consen 26 EWQNNPPTGFKHRV---TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFV 83 (161)
T ss_pred HHhcCCCCcceeec---ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEe
Confidence 57789999999984 78999999999999999999999999999999999999999984
No 17
>KOG0416|consensus
Probab=99.54 E-value=8.6e-15 Score=86.51 Aligned_cols=52 Identities=19% Similarity=0.449 Sum_probs=46.7
Q ss_pred CCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 9 PGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 9 ~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
.+..+... ++++.++++.+.||.+|+|+||+|++++.+|++||++.|+|.|.
T Consensus 18 s~yeV~~i--nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFv 69 (189)
T KOG0416|consen 18 SDYEVTII--NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFV 69 (189)
T ss_pred cCCeEEEe--cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccce
Confidence 34555665 77899999999999999999999999999999999999999984
No 18
>KOG0422|consensus
Probab=99.49 E-value=2e-14 Score=82.69 Aligned_cols=59 Identities=27% Similarity=0.386 Sum_probs=48.3
Q ss_pred CcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
+|++++...+.-... +++|+..|.+.|. |++.+|..|.|+++|.||.+||++||+|+|+
T Consensus 13 dl~~~~~~~~rn~~~-~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~ 71 (153)
T KOG0422|consen 13 DLQKNKMKFFRNIEV-DEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFK 71 (153)
T ss_pred HHHhccHHHHhhhhc-ccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeee
Confidence 344555554443333 3789999999998 8999999999999999999999999999995
No 19
>KOG0423|consensus
Probab=99.40 E-value=1.1e-13 Score=82.26 Aligned_cols=58 Identities=24% Similarity=0.498 Sum_probs=54.6
Q ss_pred CcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEe
Q psy17588 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F 61 (62)
++..+|+.||.+.+. ++|+....+.|.||.+|||++|.|++++.+..+||.+||+-.|
T Consensus 21 ~l~~~PPdGIKV~~N--eeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYF 78 (223)
T KOG0423|consen 21 SLDESPPDGIKVVVN--EEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYF 78 (223)
T ss_pred hcccCCCCceEEecC--hHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCccee
Confidence 567789999999997 8899999999999999999999999999999999999999777
No 20
>KOG0420|consensus
Probab=99.39 E-value=1.1e-12 Score=77.62 Aligned_cols=56 Identities=21% Similarity=0.520 Sum_probs=46.1
Q ss_pred CCCCCeEEeecCCCCCcc--cEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 6 EPPPGMEVDSDKAEQNLN--LWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 6 ~~~~~i~~~~~~~~~~l~--~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
+.+++|++...++.+++. +++++|. |++++|+||.|.|++.+|+.||++||+|+|.
T Consensus 41 nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCl 98 (184)
T KOG0420|consen 41 NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCL 98 (184)
T ss_pred cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeee
Confidence 567778766543344444 4999999 9999999999999999999999999999974
No 21
>KOG0896|consensus
Probab=99.13 E-value=1.3e-10 Score=66.56 Aligned_cols=42 Identities=31% Similarity=0.594 Sum_probs=39.6
Q ss_pred CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 21 ~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
-+..|..+|.||+.|+||+.+|.|+|....+||-+||.|+|.
T Consensus 37 tl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~ 78 (138)
T KOG0896|consen 37 TLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFG 78 (138)
T ss_pred eEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEE
Confidence 366899999999999999999999999999999999999983
No 22
>KOG0429|consensus
Probab=99.10 E-value=3.3e-10 Score=69.61 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=50.6
Q ss_pred cccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCC--CCCeEEeC
Q psy17588 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPF--DSPECTKK 62 (62)
Q Consensus 3 l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~--~pP~v~F~ 62 (62)
+.+.+..||.+.|+ -.|-++|.++|++.. ++|+||+|+|+|.+|++||. +-|+|.|.
T Consensus 31 V~~ekL~gIyviPS--yan~l~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~ 89 (258)
T KOG0429|consen 31 VCREKLDGIYVIPS--YANKLLWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFE 89 (258)
T ss_pred HHhccCCceEEccc--ccccceEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEee
Confidence 35688999999998 899999999999765 59999999999999999994 68999884
No 23
>KOG0895|consensus
Probab=99.08 E-value=5.6e-11 Score=84.37 Aligned_cols=58 Identities=29% Similarity=0.472 Sum_probs=53.0
Q ss_pred cccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 3 l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
|..+.+.||.++-. ++.+...++.|.||.+|||++|.|+|.+.||.+||.+||.|.++
T Consensus 863 ~~~~~~~~~~vr~~--e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~ 920 (1101)
T KOG0895|consen 863 LPLSLPSGIFVRAY--EDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYH 920 (1101)
T ss_pred hhccCCCceEEEec--hHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEee
Confidence 45577889999987 88899999999999999999999999999999999999999863
No 24
>KOG0895|consensus
Probab=99.00 E-value=1.1e-09 Score=78.07 Aligned_cols=59 Identities=29% Similarity=0.470 Sum_probs=55.1
Q ss_pred CcccCCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 2 SLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 2 ~l~~~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
-+.++.++|+.+.+. +..+...++.|.||.+++|++|+|.|.|.+|..||..||+|+++
T Consensus 293 llskdlpEgifvrp~--e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~l 351 (1101)
T KOG0895|consen 293 LLSKDLPEGIFVRPD--EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYL 351 (1101)
T ss_pred hhcccCCCCcccccc--ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEe
Confidence 356789999999997 89999999999999999999999999999999999999999874
No 25
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.57 E-value=0.0064 Score=32.72 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=24.2
Q ss_pred cccEEEEEEC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEe
Q psy17588 22 LNLWTIHMKG--AEGTLYDGEEFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 22 l~~w~~~i~g--p~~t~y~gg~f~~~i~~~~~yP~~pP~v~F 61 (62)
...+.+.+.. ...+.-....+.+.+.||++||..+|.|..
T Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l 70 (113)
T PF05773_consen 29 PPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISL 70 (113)
T ss_dssp SEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEE
T ss_pred CCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEE
Confidence 3345555521 233344556899999999999999999864
No 26
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.72 E-value=0.017 Score=30.84 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.9
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEe
Q psy17588 39 GEEFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 39 gg~f~~~i~~~~~yP~~pP~v~F 61 (62)
.-.+.+.+.+|.+||..+|.|.+
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~ 62 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISL 62 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEE
Confidence 34689999999999999999865
No 27
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=94.75 E-value=0.058 Score=30.65 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=22.0
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEe
Q psy17588 38 DGEEFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP~~pP~v~F 61 (62)
.++.+.++|.+|+.||..||.|.-
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l 57 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYL 57 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEe
Confidence 689999999999999999999864
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=93.98 E-value=0.11 Score=29.23 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=26.5
Q ss_pred CcccEEEEEECCCCCCCCCCEEE--EEEEcCCCCCCCCCeEEe
Q psy17588 21 NLNLWTIHMKGAEGTLYDGEEFQ--LQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 21 ~l~~w~~~i~gp~~t~y~gg~f~--~~i~~~~~yP~~pP~v~F 61 (62)
.+....++|- -.|+|.+|. +.|-+|.+||.+||.|..
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v 69 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYV 69 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEE
Confidence 4556666665 358888885 556679999999999853
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=92.25 E-value=0.96 Score=25.79 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=30.2
Q ss_pred CcccEEEEEEC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEe
Q psy17588 21 NLNLWTIHMKG--AEGTLYDGEEFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 21 ~l~~w~~~i~g--p~~t~y~gg~f~~~i~~~~~yP~~pP~v~F 61 (62)
.-..|.+ |.| .+.+.|....-.+-|.+|..||..+|-+.+
T Consensus 22 g~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY 63 (122)
T PF14462_consen 22 GGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFY 63 (122)
T ss_pred CCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEE
Confidence 3445655 554 356679999999999999999999887644
No 30
>KOG4018|consensus
Probab=90.20 E-value=0.86 Score=28.34 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=24.4
Q ss_pred EEEEEECCCCCCCCC--CEEEEEEEcCCCCCCCCCeEE
Q psy17588 25 WTIHMKGAEGTLYDG--EEFQLQFKFGPKYPFDSPECT 60 (62)
Q Consensus 25 w~~~i~gp~~t~y~g--g~f~~~i~~~~~yP~~pP~v~ 60 (62)
+.++|. ...+-++. +.+.+.+.++.+||.++|-|.
T Consensus 33 f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 33 FEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred ceeeee-cccccCCCccccEEEEEEccCCCCCCCccee
Confidence 555665 33222222 279999999999999999874
No 31
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=89.81 E-value=0.32 Score=28.65 Aligned_cols=19 Identities=37% Similarity=0.768 Sum_probs=10.5
Q ss_pred EEEEEEcCCCCCCCCCeEE
Q psy17588 42 FQLQFKFGPKYPFDSPECT 60 (62)
Q Consensus 42 f~~~i~~~~~yP~~pP~v~ 60 (62)
|.+++.+|..||..||.|.
T Consensus 77 F~~eFdIP~tYP~t~pEi~ 95 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIA 95 (161)
T ss_dssp EEEEEE--TTTTTS----B
T ss_pred EeeecCCCccCCCCCccee
Confidence 5567777999999999874
No 32
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=87.42 E-value=1.1 Score=25.88 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCEEEEEEEcCCCCC-CCCCeEEeC
Q psy17588 39 GEEFQLQFKFGPKYP-FDSPECTKK 62 (62)
Q Consensus 39 gg~f~~~i~~~~~yP-~~pP~v~F~ 62 (62)
.|.|.|.-..|-.|| ..||.|+|+
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 489999999999999 999999984
No 33
>KOG0897|consensus
Probab=85.82 E-value=0.68 Score=26.28 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=16.8
Q ss_pred EEEEEEEcCCCCCCCCCeEE
Q psy17588 41 EFQLQFKFGPKYPFDSPECT 60 (62)
Q Consensus 41 ~f~~~i~~~~~yP~~pP~v~ 60 (62)
.-.+.+.|+++||+.||.++
T Consensus 12 ~ill~~~f~~~fp~~ppf~r 31 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPR 31 (122)
T ss_pred eeEeeeecccCCCCCCCcce
Confidence 35677889999999999876
No 34
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=85.01 E-value=1.6 Score=26.41 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=22.5
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 38 DGEEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
+.|.|.|+-.+|--||..+|.|+|+
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4589999999999999999999984
No 35
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=83.64 E-value=2.1 Score=25.23 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=21.5
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeEEeC
Q psy17588 39 GEEFQLQFKFGPKYP-----FDSPECTKK 62 (62)
Q Consensus 39 gg~f~~~i~~~~~yP-----~~pP~v~F~ 62 (62)
.|.|.|+-.+|--|| ..||.|+|+
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 389999999999999 799999884
No 36
>KOG0309|consensus
Probab=82.52 E-value=4.4 Score=29.99 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=24.9
Q ss_pred EEEEEECCCCCCCCC-CEEEEEEEcCCCCCCC-CCeEEeC
Q psy17588 25 WTIHMKGAEGTLYDG-EEFQLQFKFGPKYPFD-SPECTKK 62 (62)
Q Consensus 25 w~~~i~gp~~t~y~g-g~f~~~i~~~~~yP~~-pP~v~F~ 62 (62)
-.+++.+|-..- +| -..++.|.||.+||.+ +|+.+|.
T Consensus 451 ctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e 489 (1081)
T KOG0309|consen 451 CTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFE 489 (1081)
T ss_pred EEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEe
Confidence 445566664332 22 3457899999999985 7888874
No 37
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=80.85 E-value=2.8 Score=25.56 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=21.8
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeEEeC
Q psy17588 38 DGEEFQLQFKFGPKYPF-----DSPECTKK 62 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP~-----~pP~v~F~ 62 (62)
+.|.|.|+-..|-.||. .||.|+|+
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34889999999999998 89999884
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=79.54 E-value=3 Score=27.61 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.3
Q ss_pred CEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 40 EEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 40 g~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
=.|.++|.+|..||.+.|.++|.
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlq 328 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQ 328 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEE
Confidence 35889999999999999999874
No 39
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=77.23 E-value=4.3 Score=24.57 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.9
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeEEeC
Q psy17588 39 GEEFQLQFKFGPKYPF-----DSPECTKK 62 (62)
Q Consensus 39 gg~f~~~i~~~~~yP~-----~pP~v~F~ 62 (62)
+|.|.|.-.+|--||. .||.|+|+
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999995 89999884
No 40
>KOG3357|consensus
Probab=71.55 E-value=7.1 Score=22.80 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=27.8
Q ss_pred cccEEEEEECCCCCCCCCCE----------EEEEEEcCCCCCCCCCeEE
Q psy17588 22 LNLWTIHMKGAEGTLYDGEE----------FQLQFKFGPKYPFDSPECT 60 (62)
Q Consensus 22 l~~w~~~i~gp~~t~y~gg~----------f~~~i~~~~~yP~~pP~v~ 60 (62)
-..|.-.=..+++|-|-|.+ |.+++.+|-.||-.+|.+.
T Consensus 50 d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeia 98 (167)
T KOG3357|consen 50 DNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIA 98 (167)
T ss_pred CCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccc
Confidence 34565544567788777743 5677778999999999864
No 41
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=69.02 E-value=13 Score=24.63 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.2
Q ss_pred cEEEEEECCCCC-CCCCCEEEEEEE---cCCCCCCCCCeEEe
Q psy17588 24 LWTIHMKGAEGT-LYDGEEFQLQFK---FGPKYPFDSPECTK 61 (62)
Q Consensus 24 ~w~~~i~gp~~t-~y~gg~f~~~i~---~~~~yP~~pP~v~F 61 (62)
+|+..|.|-.++ -|++|.+++++. |..-+. ..|+|||
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~q-R~PriRf 238 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQ-RGPRIRF 238 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccc-cCCceEe
Confidence 689999986655 888999999885 445554 4569988
No 42
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=68.08 E-value=8.8 Score=24.86 Aligned_cols=25 Identities=4% Similarity=-0.060 Sum_probs=20.9
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEeC
Q psy17588 38 DGEEFQLQFKFGPKYP------------------FDSPECTKK 62 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP------------------~~pP~v~F~ 62 (62)
+.|.|.|+-..|.-|| ..||.|+|+
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 3589999999999997 568888874
No 43
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=67.78 E-value=9.2 Score=23.83 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=20.7
Q ss_pred CCEEEEEEEcCCCCCC-------CCCeEEeC
Q psy17588 39 GEEFQLQFKFGPKYPF-------DSPECTKK 62 (62)
Q Consensus 39 gg~f~~~i~~~~~yP~-------~pP~v~F~ 62 (62)
.|.|.|+-..|--||. .||.|+|+
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5899999999999975 79999883
No 44
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=65.95 E-value=10 Score=23.57 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=20.9
Q ss_pred CCEEEEEEEcCCCCCC-------CCCeEEeC
Q psy17588 39 GEEFQLQFKFGPKYPF-------DSPECTKK 62 (62)
Q Consensus 39 gg~f~~~i~~~~~yP~-------~pP~v~F~ 62 (62)
.|.|.|+-..|--||. .||.|+|+
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5899999999999986 89999883
No 45
>KOG2391|consensus
Probab=64.73 E-value=11 Score=25.26 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=26.7
Q ss_pred CcccEEEEEECCCCCCCCCCEEEEEEE--cCCCCCCCCCeEE
Q psy17588 21 NLNLWTIHMKGAEGTLYDGEEFQLQFK--FGPKYPFDSPECT 60 (62)
Q Consensus 21 ~l~~w~~~i~gp~~t~y~gg~f~~~i~--~~~~yP~~pP~v~ 60 (62)
+++...++|. .+|.|-+|.+-|. +.+.||..||-|-
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~ 88 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICY 88 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEE
Confidence 4555666654 4788888886655 5999999999874
No 46
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=64.22 E-value=12 Score=24.18 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=21.1
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEeC
Q psy17588 38 DGEEFQLQFKFGPKYP------------------FDSPECTKK 62 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP------------------~~pP~v~F~ 62 (62)
+.|.|.|+-..|.-|| ..||.|+|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 3589999999999999 478999884
No 47
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=63.52 E-value=12 Score=24.17 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=20.7
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEeC
Q psy17588 38 DGEEFQLQFKFGPKYP------------------FDSPECTKK 62 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP------------------~~pP~v~F~ 62 (62)
+.|.|.|+-..|.-|| ..||.|+|+
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 3589999999999997 568888874
No 48
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=62.10 E-value=14 Score=23.94 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=20.5
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEeC
Q psy17588 38 DGEEFQLQFKFGPKYP------------------FDSPECTKK 62 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP------------------~~pP~v~F~ 62 (62)
+.|.|.|+-..|..|| ..||.|+|.
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 3589999999998887 478888874
No 49
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=60.75 E-value=16 Score=24.22 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=29.2
Q ss_pred CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEEe
Q psy17588 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 21 ~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~F 61 (62)
....+++.| ||.|...+-.|-|...||..||-+.|
T Consensus 52 ~~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF 86 (333)
T PF06113_consen 52 NCDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIF 86 (333)
T ss_pred ccceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEe
Confidence 344566655 59999999999999999999999988
No 50
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=56.99 E-value=26 Score=18.01 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=16.5
Q ss_pred CCcccEEEEEECCCCCCCCCCEEEEEEEcCC
Q psy17588 20 QNLNLWTIHMKGAEGTLYDGEEFQLQFKFGP 50 (62)
Q Consensus 20 ~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~ 50 (62)
++...|.+.-+ .+|.|+|.|++|+
T Consensus 2 ~~~~dW~Vsrt-------~dGdYrL~itcp~ 25 (71)
T PF11619_consen 2 NSAADWEVSRT-------LDGDYRLVITCPK 25 (71)
T ss_dssp TTT-S-EEEEE-------TTTCEEEEEEESS
T ss_pred Cccccceeeec-------cCCceEEEEecCc
Confidence 34567988765 3578999999986
No 51
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=56.83 E-value=20 Score=22.74 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=20.5
Q ss_pred CCCEEEEEEEcCCCCCC------------------CCCeEEeC
Q psy17588 38 DGEEFQLQFKFGPKYPF------------------DSPECTKK 62 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP~------------------~pP~v~F~ 62 (62)
+.|.|.|+-..|.-||+ .||.|+|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 45899999999999973 68888873
No 52
>PF15572 Imm26: Immunity protein 26
Probab=55.12 E-value=14 Score=20.25 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=15.6
Q ss_pred CCCCCCCCCEEEEEEEcCCCCCCCCCeEEe
Q psy17588 32 AEGTLYDGEEFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 32 p~~t~y~gg~f~~~i~~~~~yP~~pP~v~F 61 (62)
+++.++.|-+|++ |..||++ +.|.|
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDF 31 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDF 31 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEE
Confidence 3445677777666 4448887 55555
No 53
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=54.81 E-value=24 Score=17.38 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=11.2
Q ss_pred EEEEEEEcCCCCCCCCCeEEe
Q psy17588 41 EFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 41 ~f~~~i~~~~~yP~~pP~v~F 61 (62)
.+..+|.|+..|.. +|+|..
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~ 21 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIV 21 (72)
T ss_dssp EEEEEEE-SS--SS---EEEE
T ss_pred ceEEEeEcChhcCC-CCEEEE
Confidence 35678999999985 998864
No 54
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=53.77 E-value=23 Score=22.59 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=20.1
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEeC
Q psy17588 38 DGEEFQLQFKFGPKYP------------------FDSPECTKK 62 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP------------------~~pP~v~F~ 62 (62)
+.|.|.|+-..|.-|| ..||.|+|.
T Consensus 155 ~~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 197 (256)
T cd03458 155 EDGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFM 197 (256)
T ss_pred CCCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 3489999999999886 468888873
No 55
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=53.64 E-value=23 Score=22.49 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=20.0
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEeC
Q psy17588 38 DGEEFQLQFKFGPKYP------------------FDSPECTKK 62 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP------------------~~pP~v~F~ 62 (62)
+.|.|.|+-..|--|| ..||.|+|.
T Consensus 150 ~~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 192 (247)
T cd03462 150 EDGRYEVRTTVPVPYQIPNDGPTGALLEAMGGHSWRPAHVHFK 192 (247)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 4588999999998886 467888873
No 56
>KOG4445|consensus
Probab=53.44 E-value=20 Score=23.81 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.2
Q ss_pred CEEEEEEEcCCCCCCCCCeEEe
Q psy17588 40 EEFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 40 g~f~~~i~~~~~yP~~pP~v~F 61 (62)
-.+.|.+..+..||.+.|+|+.
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl 66 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTL 66 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEe
Confidence 4678999999999999999874
No 57
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=52.81 E-value=21 Score=20.79 Aligned_cols=30 Identities=20% Similarity=0.566 Sum_probs=21.7
Q ss_pred CCCcccEEEEEECCCCCCCC-CCEEEEEEEc
Q psy17588 19 EQNLNLWTIHMKGAEGTLYD-GEEFQLQFKF 48 (62)
Q Consensus 19 ~~~l~~w~~~i~gp~~t~y~-gg~f~~~i~~ 48 (62)
+.|...|.+++.|++||+.. +-+|-+++-|
T Consensus 44 PGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCCcceEEEEECCCCcceeccccchheeeH
Confidence 56778899999999998774 3555554444
No 58
>KOG4795|consensus
Probab=51.02 E-value=21 Score=22.86 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=17.5
Q ss_pred CEEEEEEEcCCCCCCCCCeEEeC
Q psy17588 40 EEFQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 40 g~f~~~i~~~~~yP~~pP~v~F~ 62 (62)
.-=++.|.|+++- -.+|+++|+
T Consensus 55 k~n~Vti~~~n~q-~~~P~tvFk 76 (264)
T KOG4795|consen 55 KDNKVTIEFQNNQ-STKPKTVFK 76 (264)
T ss_pred CCCeEEEEecCCC-CCCCeeEec
Confidence 3346889999887 579999995
No 59
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=50.27 E-value=33 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=23.6
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCC--CeEEe
Q psy17588 34 GTLYDGEEFQLQFKFGPKYPFDS--PECTK 61 (62)
Q Consensus 34 ~t~y~gg~f~~~i~~~~~yP~~p--P~v~F 61 (62)
.+.+.|..|++.+..|.+||..- |.|-|
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~ 44 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYM 44 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEE
Confidence 46789999999999999999776 77655
No 60
>PHA00458 single-stranded DNA-binding protein
Probab=45.87 E-value=35 Score=21.59 Aligned_cols=20 Identities=5% Similarity=0.092 Sum_probs=17.0
Q ss_pred CCCCCEEEEEEEcCCCCCCC
Q psy17588 36 LYDGEEFQLQFKFGPKYPFD 55 (62)
Q Consensus 36 ~y~gg~f~~~i~~~~~yP~~ 55 (62)
-.+.|.|++.+.++++.|..
T Consensus 33 ~n~rG~Ykv~lt~~~d~P~~ 52 (233)
T PHA00458 33 FNPRGVYKVSLTVSNDDPRC 52 (233)
T ss_pred cCCCceeEEEEEecCCChHH
Confidence 45679999999999999754
No 61
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=45.57 E-value=15 Score=23.70 Aligned_cols=35 Identities=23% Similarity=0.666 Sum_probs=25.7
Q ss_pred CCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeE
Q psy17588 19 EQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59 (62)
Q Consensus 19 ~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v 59 (62)
++++...++.+.. + ...-.++|.++.+||.++|.+
T Consensus 122 d~~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~ 156 (291)
T PF09765_consen 122 DDDLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSC 156 (291)
T ss_dssp -CCCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEE
T ss_pred CCCccEEEEEEEc---C---CceEEEEEEECCCCCCCCcee
Confidence 4567777777662 1 156779999999999999875
No 62
>PF08872 KGK: KGK domain; InterPro: IPR014971 This protein is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.
Probab=44.95 E-value=56 Score=18.32 Aligned_cols=24 Identities=4% Similarity=0.126 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCCCCCEEEE--EEEc
Q psy17588 25 WTIHMKGAEGTLYDGEEFQL--QFKF 48 (62)
Q Consensus 25 w~~~i~gp~~t~y~gg~f~~--~i~~ 48 (62)
..|.|..+...-|..|.+++ .+.|
T Consensus 67 i~CeiL~~g~~~W~kGK~ri~~~leF 92 (114)
T PF08872_consen 67 IECEILRFGSKGWQKGKVRIKVSLEF 92 (114)
T ss_pred eeEEEeccCCCCCccceEEEEEEEEE
Confidence 36777777777899999999 7777
No 63
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=43.18 E-value=45 Score=17.88 Aligned_cols=23 Identities=9% Similarity=-0.084 Sum_probs=16.9
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeEEe
Q psy17588 37 YDGEEFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 37 y~gg~f~~~i~~~~~yP~~pP~v~F 61 (62)
-+|..+.|...-|..|| .|.|.|
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W 38 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYW 38 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEE
Confidence 35667778887788888 577765
No 64
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=42.36 E-value=15 Score=22.06 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=15.5
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEeC
Q psy17588 38 DGEEFQLQFKFGPKYP------------------FDSPECTKK 62 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP------------------~~pP~v~F~ 62 (62)
+.|.|.++-..|--|| ..||.|+|+
T Consensus 82 ~~G~y~f~Ti~Pg~Y~~~~dG~~g~ll~~~g~~~~Rp~HIH~~ 124 (183)
T PF00775_consen 82 ADGRYSFRTIKPGPYPIPDDGPVGFLLRALGRHPWRPAHIHFK 124 (183)
T ss_dssp TTSEEEEEEE----EEESTTSHHHHHHHHTTTTEEE-SEEEEE
T ss_pred CCCEEEEEeeCCCCCCCCCccHHHHHHhhhccCCCcCCeEEEE
Confidence 3488999999999998 467888873
No 65
>KOG0805|consensus
Probab=41.66 E-value=9.6 Score=24.78 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=29.5
Q ss_pred eEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEE---cCCCCCCCCCeEEe
Q psy17588 11 MEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFK---FGPKYPFDSPECTK 61 (62)
Q Consensus 11 i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~---~~~~yP~~pP~v~F 61 (62)
|.+.|. -|.-..|..++. +--||||+|.+.-. =..+|| .+|.+.|
T Consensus 198 IycAPT--~D~r~~w~~sM~---~IAlEG~cFvlSA~QF~k~~d~p-~~peyl~ 245 (337)
T KOG0805|consen 198 IYCAPT--ADGRKEWQSSML---HIALEGGCFVLSACQFCKRKDFP-DHPDYLF 245 (337)
T ss_pred EEeccC--CCCcHHHHHhhh---heeecCceEEEEhhhhcccccCC-CCchhhc
Confidence 445555 667778887754 44699999998643 267777 3554433
No 66
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=39.44 E-value=16 Score=21.43 Aligned_cols=18 Identities=28% Similarity=0.837 Sum_probs=13.4
Q ss_pred EEEEEEEcCCCCCCCCCe
Q psy17588 41 EFQLQFKFGPKYPFDSPE 58 (62)
Q Consensus 41 ~f~~~i~~~~~yP~~pP~ 58 (62)
.|+-+-.+|.+||+.+|.
T Consensus 103 ~YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 103 EYRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHHhcCCCCCCCccchH
Confidence 355566789999998874
No 67
>KOG1814|consensus
Probab=37.99 E-value=30 Score=23.82 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=13.5
Q ss_pred EEEEEEcCCCCCC-CCCeE
Q psy17588 42 FQLQFKFGPKYPF-DSPEC 59 (62)
Q Consensus 42 f~~~i~~~~~yP~-~pP~v 59 (62)
-.+++.+|++||. +||++
T Consensus 76 ivlkf~LP~~YPs~spP~f 94 (445)
T KOG1814|consen 76 IVLKFHLPNDYPSVSPPKF 94 (445)
T ss_pred eeeeeecCCccccCCCCce
Confidence 3567788999996 47765
No 68
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=37.59 E-value=32 Score=22.25 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=20.5
Q ss_pred CCCCCCCCCEEEEEEEcCCCCCCCCCeE
Q psy17588 32 AEGTLYDGEEFQLQFKFGPKYPFDSPEC 59 (62)
Q Consensus 32 p~~t~y~gg~f~~~i~~~~~yP~~pP~v 59 (62)
-+=|||.+|.|+++--+.+.-=-+.|.|
T Consensus 180 qDITPygNgvyHiNSIlQP~~aT~aPVV 207 (276)
T PF06675_consen 180 QDITPYGNGVYHINSILQPAVATDAPVV 207 (276)
T ss_pred cccccCCCCceeeeccccchhhcCCCee
Confidence 3567999999999987765544456654
No 69
>PF08084 PROCT: PROCT (NUC072) domain; InterPro: IPR012984 The PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [].; PDB: 2P87_A 2P8R_A 3SBG_A 2OG4_A.
Probab=37.41 E-value=15 Score=21.09 Aligned_cols=42 Identities=12% Similarity=0.343 Sum_probs=13.5
Q ss_pred CCCCCeEEeecCCCCCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCC
Q psy17588 6 EPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPF 54 (62)
Q Consensus 6 ~~~~~i~~~~~~~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~ 54 (62)
+..-|..+.|. ++ .|+-...|..-+ .+-.|.+++..|.+|=.
T Consensus 56 dr~~GfFlVP~---~~--~WNY~Fmg~~~~--~~~~Y~lkld~P~~FY~ 97 (125)
T PF08084_consen 56 DRILGFFLVPE---DG--VWNYNFMGAKFS--PNMKYDLKLDIPKEFYH 97 (125)
T ss_dssp TTS--EEEEET---TS----B-TT-GGG----TT----EEE-----TT-
T ss_pred cceeeEEEccC---CC--cccceecccccC--CCCeeEEEeCCchhhhC
Confidence 44455555553 21 365555555443 56789999999887743
No 70
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=35.02 E-value=40 Score=18.21 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=9.6
Q ss_pred CCCCCCCCCCEEEEEEEcCCCC
Q psy17588 31 GAEGTLYDGEEFQLQFKFGPKY 52 (62)
Q Consensus 31 gp~~t~y~gg~f~~~i~~~~~y 52 (62)
||+..|=.+++|++. ||++.
T Consensus 1 G~d~~P~RdHVFhlt--FPkeW 20 (87)
T PF08675_consen 1 GPDPQPSRDHVFHLT--FPKEW 20 (87)
T ss_dssp SS----SGCCEEEEE----TT-
T ss_pred CCCCCCCcceEEEEe--CchHh
Confidence 566677778888876 77654
No 71
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=33.38 E-value=39 Score=20.02 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=13.5
Q ss_pred EEEEcCCCCCCCCCeEE
Q psy17588 44 LQFKFGPKYPFDSPECT 60 (62)
Q Consensus 44 ~~i~~~~~yP~~pP~v~ 60 (62)
+.|.++.+||..+|.|.
T Consensus 57 ~~i~~~~~~~~~~P~v~ 73 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVP 73 (162)
T ss_pred EEEEecCCCCCCCccch
Confidence 46788999999998654
No 72
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=33.21 E-value=14 Score=27.23 Aligned_cols=18 Identities=33% Similarity=0.792 Sum_probs=0.0
Q ss_pred EEEEcCCCCCCCCCeEEe
Q psy17588 44 LQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 44 ~~i~~~~~yP~~pP~v~F 61 (62)
|.|.+|.+||..+|.+..
T Consensus 718 l~l~vP~~YP~~sp~~~~ 735 (799)
T PF09606_consen 718 LRLTVPADYPRQSPQCSV 735 (799)
T ss_dssp ------------------
T ss_pred eeEeCCCCCCccCCcCcc
Confidence 567789999999888653
No 73
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=30.34 E-value=86 Score=16.96 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEcCC
Q psy17588 25 WTIHMKGAEGTLYDGEEFQLQFKFGP 50 (62)
Q Consensus 25 w~~~i~gp~~t~y~gg~f~~~i~~~~ 50 (62)
.++.+.|+...+=.|..+.+.+.|-+
T Consensus 78 ~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 78 YHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CEEEEECESS-B-TTEEEEEEEEETT
T ss_pred EEEEEeCCcccCCCCCEEEEEEEECC
Confidence 68889999888899999999999865
No 74
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8. Members of this family are found in pre-mRNA-processing factor 8 (Prp8) which is a critical splicing factor, interacting with several other spliceosomal proteins, snRNAs, and the pre-mRNA, thus organizing and stabilizing the spliceosome catalytic core. Prp8 is one of the largest and most highly conserved of nuclear proteins, occupying a central position in the catalytic core of the spliceosome. Its C-terminal domain exhibits a JAB1/MPN-like core similar to deubiquitinating enzymes, but does not show catalytic isopeptidase activity, possibly because the putative isopeptidase center is covered by insertions and terminal appendices that are grafted onto this core, thus impairing the metal binding site. It is proposed that this domain is a protein interaction domain instead of a Zn(2+)-dependent metalloenzyme as proposed for some MPN proteins. The DEAD-box protein Brr2 and t
Probab=29.00 E-value=55 Score=20.91 Aligned_cols=26 Identities=15% Similarity=0.561 Sum_probs=18.0
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEcCCCC
Q psy17588 25 WTIHMKGAEGTLYDGEEFQLQFKFGPKY 52 (62)
Q Consensus 25 w~~~i~gp~~t~y~gg~f~~~i~~~~~y 52 (62)
|+-...|..-+ .+..|.+++..|.+|
T Consensus 214 WNY~f~g~~~~--~~~~y~l~~~~P~~F 239 (252)
T cd08056 214 WNYNFMGAKHS--PNMKYDLKLDIPKEF 239 (252)
T ss_pred ccccccccccC--CCCceeEEeCCchhh
Confidence 66666665544 357788888888776
No 75
>KOG1976|consensus
Probab=28.56 E-value=31 Score=23.09 Aligned_cols=19 Identities=21% Similarity=0.446 Sum_probs=15.1
Q ss_pred CCCCEEEEEEEcCCCCCCC
Q psy17588 37 YDGEEFQLQFKFGPKYPFD 55 (62)
Q Consensus 37 y~gg~f~~~i~~~~~yP~~ 55 (62)
++...|...|.||+.||.+
T Consensus 306 f~~kl~E~~i~FpPsypys 324 (391)
T KOG1976|consen 306 FAFKLKEETIFFPPSYPYS 324 (391)
T ss_pred HHHHHhheeecCCCCCCCC
Confidence 3345788999999999975
No 76
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=26.07 E-value=1.2e+02 Score=16.30 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=18.3
Q ss_pred CCCCCCEEEEEEEcCCCCCCCCCeEEe
Q psy17588 35 TLYDGEEFQLQFKFGPKYPFDSPECTK 61 (62)
Q Consensus 35 t~y~gg~f~~~i~~~~~yP~~pP~v~F 61 (62)
+.-+|.-+.|...-|+.|| +|++.|
T Consensus 14 ~v~eG~~~~L~C~pP~g~P--~p~~~W 38 (96)
T cd05727 14 KVKEGWGVVLFCDPPPHYP--DLSYRW 38 (96)
T ss_pred eeeeCCcEEEeeCCCCCCC--CCEEEE
Confidence 3556777888888888888 577665
No 77
>PF15586 Imm47: Immunity protein 47
Probab=25.64 E-value=1.3e+02 Score=16.77 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=22.4
Q ss_pred CCCCcccEEEEEECCCCCCCCCCEEEEEEEcC
Q psy17588 18 AEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFG 49 (62)
Q Consensus 18 ~~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~ 49 (62)
+.++...|.-...||.+.. .+..|.+.|.-|
T Consensus 22 d~~~F~~~l~l~IG~~~~~-G~d~F~v~VcTP 52 (116)
T PF15586_consen 22 DPDNFCFWLELDIGPEGED-GSDYFQVFVCTP 52 (116)
T ss_pred CCcceEEEEEEEECCCCCC-ccceEEEEEEcH
Confidence 4567777877888998876 355688877655
No 78
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=24.85 E-value=1.2e+02 Score=15.91 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=19.0
Q ss_pred ccEEEEEECCCCCCCCCCEEEEEEEcCCCCCC
Q psy17588 23 NLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPF 54 (62)
Q Consensus 23 ~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~ 54 (62)
+.|.+-|.++.+.--..=+=++...+-++|+.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~ 33 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN 33 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC
Confidence 46888888776643344455666666676663
No 79
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=24.31 E-value=43 Score=19.56 Aligned_cols=14 Identities=29% Similarity=0.861 Sum_probs=8.5
Q ss_pred EcCCCCCC----CCCeEE
Q psy17588 47 KFGPKYPF----DSPECT 60 (62)
Q Consensus 47 ~~~~~yP~----~pP~v~ 60 (62)
.+|.+||. +||+|+
T Consensus 68 ~LP~E~PL~pGEk~P~iR 85 (138)
T PF11819_consen 68 ELPPEYPLEPGEKPPKIR 85 (138)
T ss_pred cCCCccCCCCCCCCCccc
Confidence 35777775 356554
No 80
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=23.37 E-value=1.3e+02 Score=15.70 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=16.9
Q ss_pred CcccEEEEEECCCCCCCCCCEEEEEEEcC
Q psy17588 21 NLNLWTIHMKGAEGTLYDGEEFQLQFKFG 49 (62)
Q Consensus 21 ~l~~w~~~i~gp~~t~y~gg~f~~~i~~~ 49 (62)
.--.|++.|.| .++|..|.++|.-+
T Consensus 45 ~~gvw~~~v~~----~~~g~~Y~y~i~~~ 69 (100)
T cd02860 45 ENGVWSVTLDG----DLEGYYYLYEVKVY 69 (100)
T ss_pred CCCEEEEEeCC----ccCCcEEEEEEEEe
Confidence 34568888765 26677788887654
No 81
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=22.63 E-value=72 Score=17.80 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=9.8
Q ss_pred CCCEEEEEEEc
Q psy17588 38 DGEEFQLQFKF 48 (62)
Q Consensus 38 ~gg~f~~~i~~ 48 (62)
+||.|.+++.+
T Consensus 78 kgG~y~m~V~l 88 (106)
T cd02848 78 KGGRYQMQVAL 88 (106)
T ss_pred CCCeEEEEEEE
Confidence 59999999987
No 82
>PF15597 Imm36: Immunity protein 36
Probab=22.43 E-value=1.5e+02 Score=16.37 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=18.6
Q ss_pred CCCcccEEEEEECCCCCCCCCCEEEEEEEcCC
Q psy17588 19 EQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGP 50 (62)
Q Consensus 19 ~~~l~~w~~~i~gp~~t~y~gg~f~~~i~~~~ 50 (62)
+.+...|.+.|. |.++.|.+..+--.
T Consensus 28 E~~~~ew~v~i~------y~~~kf~Vy~tddR 53 (101)
T PF15597_consen 28 EHNNLEWAVHIE------YKNGKFEVYSTDDR 53 (101)
T ss_pred CCCCCcceEEEE------EeCCEEEEEeeccc
Confidence 778889999887 66677766555433
No 83
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=22.20 E-value=1.2e+02 Score=18.30 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=15.7
Q ss_pred EEEEEEcCCCCCCCCCeEEeC
Q psy17588 42 FQLQFKFGPKYPFDSPECTKK 62 (62)
Q Consensus 42 f~~~i~~~~~yP~~pP~v~F~ 62 (62)
..+++.| .+|-..||.|.|.
T Consensus 55 ~~lr~d~-~n~Dl~PPSV~fv 74 (177)
T PF14455_consen 55 LRLRFDF-TNWDLRPPSVVFV 74 (177)
T ss_pred eEEEEec-cccCcCCCceEEe
Confidence 5667777 6799999999883
No 84
>PHA03022 hypothetical protein; Provisional
Probab=21.52 E-value=1.1e+02 Score=19.81 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=17.6
Q ss_pred EEEECCCCCCCCCCEEEEEEEcCCCC
Q psy17588 27 IHMKGAEGTLYDGEEFQLQFKFGPKY 52 (62)
Q Consensus 27 ~~i~gp~~t~y~gg~f~~~i~~~~~y 52 (62)
..|+.|.||.|.+|. +-+|.|..+|
T Consensus 17 lsifnp~gtlwcdg~-kceiv~tsdf 41 (335)
T PHA03022 17 LSIFNPNGTLWCDGK-KCEIVFTSDF 41 (335)
T ss_pred EEEecCCCceEECCc-eEEEEEecCc
Confidence 467889999998875 4455555554
No 85
>PF11386 VERL: Vitelline envelope receptor for lysin; InterPro: IPR021526 VERL, the egg vitelline envelope (VE) receptor for lysin, is a giant unbranched glycoprotein comprising 30% of the vitelline envelope. Lysin binds to VERL and creates a hole as VERL molecules lose cohesion and splay apart. These proteins are important in the mediation of fertilisation [].
Probab=21.48 E-value=1.4e+02 Score=15.67 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=15.9
Q ss_pred CCCEEEEEEEcCCCCCCCCC
Q psy17588 38 DGEEFQLQFKFGPKYPFDSP 57 (62)
Q Consensus 38 ~gg~f~~~i~~~~~yP~~pP 57 (62)
+.|++-++|.+|.++...-|
T Consensus 6 esgfnmmrI~yp~n~~~~~p 25 (78)
T PF11386_consen 6 ESGFNMMRIYYPSNKLLDSP 25 (78)
T ss_pred ccceEEEEEEccCcccCCCC
Confidence 45889999999999876544
No 86
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=21.39 E-value=1.9e+02 Score=17.08 Aligned_cols=28 Identities=18% Similarity=0.422 Sum_probs=23.7
Q ss_pred cEEEEEECCCCCCCCCCEEEEEEEcCCC
Q psy17588 24 LWTIHMKGAEGTLYDGEEFQLQFKFGPK 51 (62)
Q Consensus 24 ~w~~~i~gp~~t~y~gg~f~~~i~~~~~ 51 (62)
-.++-+.|++..+=+|..+.+++.|-+.
T Consensus 104 gyHvMlm~lK~pl~eGd~v~vtL~f~~~ 131 (151)
T COG2847 104 GYHVMLMGLKKPLKEGDKVPVTLKFEKA 131 (151)
T ss_pred CEEEEEeccCCCccCCCEEEEEEEEecC
Confidence 3578899999999999999999998653
No 87
>PF14501 HATPase_c_5: GHKL domain
Probab=21.08 E-value=91 Score=16.15 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=8.5
Q ss_pred CCCCEEEEEEEcC
Q psy17588 37 YDGEEFQLQFKFG 49 (62)
Q Consensus 37 y~gg~f~~~i~~~ 49 (62)
.+++.|.++|.||
T Consensus 88 ~~~~~f~~~i~ip 100 (100)
T PF14501_consen 88 SEDGIFTVKIVIP 100 (100)
T ss_pred EECCEEEEEEEEC
Confidence 4556777777665
No 88
>KOG1834|consensus
Probab=20.99 E-value=43 Score=24.79 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=28.4
Q ss_pred ccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCeEE
Q psy17588 23 NLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60 (62)
Q Consensus 23 ~~w~~~i~gp~~t~y~gg~f~~~i~~~~~yP~~pP~v~ 60 (62)
++....+.+|.-+.|-+|+-+=-..+.++||.-|+++.
T Consensus 445 H~Y~ln~efp~VtlyvDG~Sfep~~i~ddwplHpsk~~ 482 (952)
T KOG1834|consen 445 HHYVLNVEFPDVTLYVDGKSFEPPLITDDWPLHPSKIE 482 (952)
T ss_pred heeEEeecCceEEEEEcCcccCCceeccCCccCccccc
Confidence 33445566888888877776666778899999988753
No 89
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=20.94 E-value=54 Score=21.66 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=25.6
Q ss_pred EECCCCCCCCCCEEEEEEEcCCCCCC--CCCeEE
Q psy17588 29 MKGAEGTLYDGEEFQLQFKFGPKYPF--DSPECT 60 (62)
Q Consensus 29 i~gp~~t~y~gg~f~~~i~~~~~yP~--~pP~v~ 60 (62)
+.|-..+.|.||-+.+|....+.++. .||++.
T Consensus 19 ~~gQ~rg~~tgGs~~~R~~~~~~~l~s~~pPs~~ 52 (361)
T PF06122_consen 19 YQGQTRGYYTGGSFSVRNPIRNINLVSFQPPSIS 52 (361)
T ss_pred hccccCCEEecceEEEEcCCCCcceEEeeCCccc
Confidence 34556778999999999999888885 688874
No 90
>KOG1047|consensus
Probab=20.84 E-value=1.2e+02 Score=21.93 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=20.8
Q ss_pred CCCCCCEEEEEEEcCCCCCC---CCCeEEeC
Q psy17588 35 TLYDGEEFQLQFKFGPKYPF---DSPECTKK 62 (62)
Q Consensus 35 t~y~gg~f~~~i~~~~~yP~---~pP~v~F~ 62 (62)
++|.=|.|.+ +.+|.+||+ +-|.++|.
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~ 277 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFV 277 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeee
Confidence 4677788888 557999995 78888873
No 91
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=20.80 E-value=1.3e+02 Score=14.88 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=16.7
Q ss_pred CcccEEEEEECCCCCCCCCC-EEEEEEEcCC
Q psy17588 21 NLNLWTIHMKGAEGTLYDGE-EFQLQFKFGP 50 (62)
Q Consensus 21 ~l~~w~~~i~gp~~t~y~gg-~f~~~i~~~~ 50 (62)
+--.|.++|.+ ..-+|+ .|+++|....
T Consensus 47 ~~G~w~~~~~~---~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 47 DDGVWEVTVPG---DLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp TTTEEEEEEEG---CGTTTT-EEEEEEEETT
T ss_pred CCCEEEEEEcC---CcCCCCEEEEEEEEeCC
Confidence 34568888874 122244 7888887765
No 92
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=20.77 E-value=1.3e+02 Score=16.68 Aligned_cols=20 Identities=25% Similarity=0.700 Sum_probs=15.6
Q ss_pred cEEEEEECCCCCCCCCCEEEEE
Q psy17588 24 LWTIHMKGAEGTLYDGEEFQLQ 45 (62)
Q Consensus 24 ~w~~~i~gp~~t~y~gg~f~~~ 45 (62)
.|.|.|=| +.+|+|..|-|.
T Consensus 2 kWkC~iCg--~~I~~gqlFTF~ 21 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTFT 21 (101)
T ss_pred ceEEEecC--CeeeecceEEEe
Confidence 69998876 458899888774
No 93
>PF07547 RSD-2: RSD-2 N-terminal domain; InterPro: IPR011508 This domain is found in three copies at the N terminus of the Caenorhabditis elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi []. Mutations in the rsd-2 gene do not affect somatic genes but only germline expressed genes [].
Probab=20.62 E-value=1.6e+02 Score=15.72 Aligned_cols=27 Identities=7% Similarity=0.239 Sum_probs=21.0
Q ss_pred ccEEEEEECCC-CCCCCCCEEEEEEEcC
Q psy17588 23 NLWTIHMKGAE-GTLYDGEEFQLQFKFG 49 (62)
Q Consensus 23 ~~w~~~i~gp~-~t~y~gg~f~~~i~~~ 49 (62)
..|.+.+..++ .+.=.++.|+..|.+.
T Consensus 17 ad~yG~V~~s~~~~~~~~~vyk~~I~vn 44 (84)
T PF07547_consen 17 ADWYGLVDCSDVESMERGTVYKTEITVN 44 (84)
T ss_pred ccccCeEEcccccccccccEEEEEEEEE
Confidence 35888888776 5666789999999886
No 94
>PF13026 DUF3887: Protein of unknown function (DUF3887)
Probab=20.04 E-value=1.1e+02 Score=16.86 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=19.2
Q ss_pred cEEEEEECCCCCCCCCCEEEEEEEcCCC
Q psy17588 24 LWTIHMKGAEGTLYDGEEFQLQFKFGPK 51 (62)
Q Consensus 24 ~w~~~i~gp~~t~y~gg~f~~~i~~~~~ 51 (62)
+...+|.-+. |+.|...+.|.|.++
T Consensus 73 ~~~~vV~vak---Yen~~~~ftitF~~e 97 (101)
T PF13026_consen 73 GYATVVQVAK---YENGKHQFTITFDNE 97 (101)
T ss_pred cceEEEEEec---ccCccEEEEEEeCcc
Confidence 5555565555 999999999999764
Done!