RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17588
(62 letters)
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo
sapiens} SCOP: d.20.1.1
Length = 136
Score = 72.7 bits (179), Expect = 8e-19
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
++L +PPPGM ++ + ++ W + M+GA GTLY+GE+FQL FKF +YPFDSP+
Sbjct: 32 LALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVM 91
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 63.8 bits (156), Expect = 2e-15
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+ + PP +D N+ +W + G E T+Y E ++L+ F YP P
Sbjct: 16 HNFLNNPPINCTLDVH--PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVY 73
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 63.1 bits (154), Expect = 5e-15
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+ +K PP +D N+ +W + G E T+Y E ++++ F YP P
Sbjct: 30 NNFLKNPPINCTIDVH--PSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVY 87
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1
PDB: 1pzv_A
Length = 172
Score = 51.6 bits (124), Expect = 2e-10
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L K P G + +L W + + G TLY+G F+ F YP P+
Sbjct: 27 AELNKNPVEGFSA-GLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMK 85
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 51.1 bits (123), Expect = 3e-10
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+L +PP G++V + E++L + ++G EGT Y G F+++ G +P P+
Sbjct: 23 TTLTADPPDGIKVFPN--EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGY 80
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 51.2 bits (123), Expect = 3e-10
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 1 MSLMKEPPPGMEV--DSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPE 58
K G D + L WT + G T+Y+ + L+ + GPKYP P
Sbjct: 35 EEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPF 94
Query: 59 CT 60
Sbjct: 95 VR 96
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 51.3 bits (123), Expect = 3e-10
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L +EP G V + E +L W + + G T Y+G F+ + KF YP+ P
Sbjct: 17 KGLQEEPVEGFRV-TLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFR 75
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 50.7 bits (122), Expect = 3e-10
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
K G +++ + + + + G GT Y+G +++ YPF SP
Sbjct: 11 FTKLIMAGYDLELN--NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIG 66
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 50.9 bits (122), Expect = 4e-10
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 1 MSLMKEPPPGMEV--DSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPE 58
K G D + L WT + G T+Y+ + L+ + GPKYP P
Sbjct: 45 EEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPF 104
Query: 59 CT 60
Sbjct: 105 VR 106
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 50.0 bits (120), Expect = 7e-10
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L+ EP PG++ + D E N + + + G + + ++G F+L+ +YP +P+
Sbjct: 15 QRLLAEPVPGIKAEPD--ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR 72
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 50.0 bits (120), Expect = 7e-10
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+L+ PG+ D NL W + G + T+Y+ +++L +F YP+ P
Sbjct: 19 RTLLMSGDPGITAFPD--GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVK 76
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium,
SGC, ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 50.5 bits (121), Expect = 9e-10
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+ E ++ + N W +KG EGT Y+G F L YP++ P+
Sbjct: 33 KDIENENVQEIDAHIK--DSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIK 90
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 49.5 bits (119), Expect = 1e-09
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+L EPPPG+ +N + I + G +GT Y+G ++L+ +YP + P+
Sbjct: 11 QNLANEPPPGIMAVPV--PENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVR 68
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 49.6 bits (119), Expect = 1e-09
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 1 MSLMKEPPPGME---VDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
K+ P G V +L W + G EGT + G + + ++ +YP P
Sbjct: 14 KKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPP 73
Query: 58 ECT 60
+
Sbjct: 74 KVK 76
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 49.6 bits (119), Expect = 1e-09
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L+ +P PG+ + + NL + + ++G E + Y+ F+L+ YP ++P+
Sbjct: 15 EKLVSDPVPGITAEPH--DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVR 72
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme;
structural genomics consortium, HSCP150, ligase, SGC;
2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 49.7 bits (119), Expect = 1e-09
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L EPPPG+ D + ++ + G T Y+ F+L+ +YPF+ P+
Sbjct: 14 HMLATEPPPGITCWQD--KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIR 71
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 49.2 bits (118), Expect = 2e-09
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
++ +P + ++ +E +++ G GT Y+G +F + + +YPF P+
Sbjct: 11 QAVKDDPAAHITLEF-VSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQ 69
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome
pathway, structural genomics, protein structure
initiative; 1.10A {Caenorhabditis elegans} SCOP:
d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B*
4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A
3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A
...
Length = 150
Score = 48.8 bits (117), Expect = 2e-09
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L ++PP +L W + G + Y G F L F YPF P+
Sbjct: 14 QDLGRDPPAQCSAGPV--GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVA 71
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 49.4 bits (118), Expect = 2e-09
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+ +PPP N+ W + G G++Y+G F L F P+YPF P+ T
Sbjct: 58 ADITLDPPPNCSAGPK--GDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVT 115
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1
PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 48.8 bits (117), Expect = 2e-09
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L ++PP G+ + N+ LW + G + T +DG F+L +F YP P
Sbjct: 14 KRLQQDPPAGISGAPQ--DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVR 71
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 48.8 bits (117), Expect = 3e-09
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L K+PP ++ W + G E + Y G F L F YPF P+
Sbjct: 31 NDLSKDPPTNCSAGPV--GDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVN 88
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 48.9 bits (117), Expect = 3e-09
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+ L++ + LN + + G +GT Y+G ++++ KYPF SP
Sbjct: 35 IKLIESKHEVTILG------GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIG 88
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 48.9 bits (117), Expect = 3e-09
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
M+LM G+ + NL W + GA GT+Y+ ++L +F YP+++P
Sbjct: 40 MTLMMSGDKGISAFPE--SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAP 94
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A
3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 48.5 bits (116), Expect = 3e-09
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 1 MSLMKEPPPGME---VDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
+ K+ P G + NL W + G +GT ++G F+L+ F YP P
Sbjct: 17 KAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 76
Query: 58 ECT 60
+C
Sbjct: 77 KCK 79
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha,
ligase, UBL conjugation pathway, endo reticulum,
membrane, metal-binding; 1.80A {Homo sapiens} PDB:
3fsh_A 2cyx_A 2kly_A
Length = 164
Score = 48.5 bits (116), Expect = 3e-09
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L PP G+ E+N W + G E T ++ F F YP P+
Sbjct: 13 KQLTLNPPEGIVA-GPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMR 71
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase,
UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 48.1 bits (115), Expect = 4e-09
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L ++PP ++ W + G + Y G F L F YPF P
Sbjct: 29 NDLARDPPAQCSAGPV--GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 83
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 47.7 bits (114), Expect = 4e-09
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 1 MSLMKEPPP-----GMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFD 55
K P G+ D + W + G + ++ + L GP YP
Sbjct: 16 EKGEKGFGPESCSYGLADSDD---ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDS 72
Query: 56 SPECT 60
P+ T
Sbjct: 73 PPKVT 77
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP:
d.20.1.1
Length = 165
Score = 48.1 bits (115), Expect = 5e-09
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L+K+ PPG+ K+E N+ +W ++G T Y F + +F YP P+ T
Sbjct: 14 QQLIKDSPPGIVA-GPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLT 72
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 48.1 bits (115), Expect = 5e-09
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 1 MSLMKEPPPGME---VDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
++ P G S +L W + + G T ++G ++L F +YP P
Sbjct: 20 KQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPP 79
Query: 58 ECT 60
+C
Sbjct: 80 KCR 82
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 48.3 bits (115), Expect = 6e-09
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
++ +P + ++ +E +++ G GT Y+G +F + + +YPF P+
Sbjct: 12 QAVKDDPAAHITLEF-VSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQ 70
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 47.7 bits (114), Expect = 6e-09
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 1 MSLMKEPPP-----GMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFD 55
K G+E D L+ W+ + G GT+++ + L YP
Sbjct: 31 ERGQKGNVSEGVSFGLESADD---ITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDS 87
Query: 56 SPECT 60
P
Sbjct: 88 PPTVK 92
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 48.4 bits (115), Expect = 8e-09
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L ++PP ++ W + G + Y G F L F YPF P
Sbjct: 13 NDLARDPPAQCSAGPV--GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP 67
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 46.9 bits (112), Expect = 1e-08
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+ ++ PPG+ N+ +W + G T Y+ F+L +F +YP P
Sbjct: 14 KRMKEDAPPGVSASPL--PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVK 71
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 47.1 bits (112), Expect = 2e-08
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
+ G+ +++ W + G GT Y+G F L P YP++ P
Sbjct: 55 PAATHSTSHGVSAQIV--GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 46.2 bits (110), Expect = 2e-08
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L + G+ +++ W + ++G + +++ G FQL F +Y + P
Sbjct: 33 CDLKENNYKGITAKPV--SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVK 90
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 46.1 bits (110), Expect = 3e-08
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
+ + ++VD ++N + G T Y+G +QL+ K YPF+ P
Sbjct: 21 LKSEETSKNQIKVDLV--DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPP 75
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 45.9 bits (109), Expect = 4e-08
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
+ + ++VD ++N + G T Y+G +QL+ K YPF+ P
Sbjct: 18 LKSEETSKNQIKVDLV--DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPP 72
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 45.7 bits (108), Expect = 6e-08
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
+ + ++VD ++N + G T Y+G +QL+ K YPF+ P
Sbjct: 70 LKSEETSKNQIKVDLV--DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPP 124
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 45.1 bits (107), Expect = 7e-08
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
M+ +V + + + KG EGT Y+ + L + YPF SP
Sbjct: 21 YMRLCNSTRKVYPSD---TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSP 72
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 44.6 bits (106), Expect = 9e-08
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L K+PPP + S + N+ +W + + Y + F L+ F P+YPF P
Sbjct: 16 LQKKPPPYLRNLS-SDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPP 68
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum,
ligase, UBL conjugation pathway, structural genomics
consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 44.4 bits (105), Expect = 1e-07
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
+ + K+P P + + N+ W ++G E T Y+G + + F ++PF P
Sbjct: 24 LRIKKDPVPYICAEPL--PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPP 78
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex,
peroxisomal protein; 2.60A {Saccharomyces cerevisiae}
PDB: 2y9p_A 2y9o_A
Length = 172
Score = 44.3 bits (105), Expect = 1e-07
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 2 SLMKEPPPGMEVD-SDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+ P G+ + E +L+ W + G T Y+ +F++ + YP + P+ +
Sbjct: 26 DPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKIS 85
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 41.5 bits (98), Expect = 1e-06
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
+ K E NL W + + YD F+++ F +YPF P
Sbjct: 14 IRKCGMKNFRN-IQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPP 66
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 41.6 bits (98), Expect = 1e-06
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 3 LMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L P +V + N + Y G +FQ + + Y P
Sbjct: 26 LEANLPCTCKVH--FPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPP 78
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 41.3 bits (97), Expect = 2e-06
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 1 MSLMKEPPPGMEV--DSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPE 58
SL P + V D A+++ + + + Y+ F YP + P+
Sbjct: 39 DSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPK 98
Query: 59 CT 60
Sbjct: 99 VV 100
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 40.8 bits (95), Expect = 4e-06
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 2 SLMKEPP----PGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
+L P + V D E+ L++ + + G T Y F+ F YP P
Sbjct: 87 TLSTSLPLSSSSSVFVRCD--EERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPP 144
Query: 58 ECT 60
Sbjct: 145 LVN 147
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 40.4 bits (95), Expect = 4e-06
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L + +L + + + + Y +F FK G YP D P
Sbjct: 36 NELNLPKTCDISFSD---PDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPP 88
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 40.1 bits (94), Expect = 4e-06
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 8 PPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGE--EFQLQFKFGPKYPFDSP 57
P + W + +K ++Y G +QL F YP + P
Sbjct: 35 SPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPP 86
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme
E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 38.8 bits (91), Expect = 1e-05
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
L + +L + + + + Y +F FK G YP D P
Sbjct: 16 NELNLPKTCDISFSD---PDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPP 68
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 37.6 bits (87), Expect = 4e-05
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 13/73 (17%)
Query: 1 MSLMKEPPPGMEVDSDK-AEQNLNLWTIHMKGAE------------GTLYDGEEFQLQFK 47
+ + + S + +L W + ++ + E L F
Sbjct: 37 RDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFS 96
Query: 48 FGPKYPFDSPECT 60
F +PFD P
Sbjct: 97 FKDNFPFDPPFVR 109
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 25.3 bits (55), Expect = 0.97
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 25 WTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+TI + G + + L+F + KYP ++P
Sbjct: 40 FTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYE 75
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 24.0 bits (52), Expect = 3.0
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 16 DKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPE 58
++E + ++ IH K AEG + +L F YP P
Sbjct: 33 SRSETDGTVFRIHTK-AEGFMDADIPLELVFHLPVNYPSCLPG 74
>2fkc_A R.HINP1I restriction endonuclease; protein dimerizaton, DNA
superhelix, protein-DNA-metal ION complex, hydrolase/DNA
complex; 2.39A {Haemophilus influenzae} PDB: 1ynm_A
2fkh_B 2fl3_A 2flc_A
Length = 247
Score = 24.0 bits (51), Expect = 3.5
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 15 SDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFD 55
S + N TI KG + LQFK P FD
Sbjct: 208 SPRGSINFGRVTIQRKGGDNGRETAN--MLQFKIDPTELFD 246
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation
pathway, ligase, structural genomics, PSI; 2.20A
{Leishmania major}
Length = 168
Score = 23.3 bits (50), Expect = 5.8
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 41 EFQLQFKFGPKYPFDSPE 58
EF++ F YP PE
Sbjct: 86 EFEMNFDIPVTYPQAPPE 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.135 0.417
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 941,580
Number of extensions: 38120
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 56
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)