RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17588
(62 letters)
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 45.4 bits (107), Expect = 1e-08
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
++L +PPPGM ++ + ++ W + M+GA GTLY+GE+FQL FKF +YPFDSP+
Sbjct: 13 LALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVM 72
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 43.2 bits (101), Expect = 1e-07
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 1 MSLMKEPPPGME---VDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
+ K+ P G + NL W + G +GT ++G F+L+ F YP P
Sbjct: 12 KAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 71
Query: 58 ECT 60
+C
Sbjct: 72 KCK 74
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 41.2 bits (96), Expect = 3e-07
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
+ + PP +D N+ +W + G E T+Y E ++L+ F YP P
Sbjct: 8 HNFLNNPPINCTLDVH--PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIV 64
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 40.9 bits (95), Expect = 8e-07
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
+ L++ + LN + + G +GT Y+G ++++ KYPF SP
Sbjct: 13 VKLIESKHEVTILG------GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSI 65
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 38.6 bits (89), Expect = 6e-06
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
M L D + + + KG EGT Y+ + L + YPF SP
Sbjct: 10 MRLCNSTRKVYPSD------TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIG 63
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 38.2 bits (88), Expect = 1e-05
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+ + P G + ++ W + + G TLY+G F+ F YP P+
Sbjct: 10 ADMRRVPVDGFSAGLVD-DNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMK 68
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 37.4 bits (86), Expect = 1e-05
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L K P G + +L W + + G TLY+G F+ F YP P+
Sbjct: 9 AELNKNPVEGFSAGLID-DNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMK 67
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 37.4 bits (86), Expect = 2e-05
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+L+ PG+ D NL W + G + T+Y+ +++L +F YP+ P
Sbjct: 19 RTLLMSGDPGITAFPD--GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVK 76
Query: 61 KK 62
Sbjct: 77 FT 78
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 37.4 bits (86), Expect = 2e-05
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L + G+ +++ W + ++G + +++ G FQL F +Y + P
Sbjct: 14 CDLKENNYKGITAKPV--SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 70
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 37.1 bits (85), Expect = 2e-05
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
++ +P + ++ E +++ G GT Y+G +F + + +YPF P+
Sbjct: 11 QAVKDDPAAHITLEFVS-ESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQ 69
Query: 61 K 61
Sbjct: 70 F 70
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 36.5 bits (84), Expect = 3e-05
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 3 LMKEPPPGMEV--DSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
K G D + L WT + G T+Y+ + L+ + GPKYP P
Sbjct: 17 GQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVR 76
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 35.9 bits (82), Expect = 6e-05
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L ++PP +L W + G + Y G F L F YPF P+
Sbjct: 11 QDLGRDPPAQCSAGPV--GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKV 67
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 35.5 bits (81), Expect = 9e-05
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
+L +PP G++V + E++L + ++G EGT Y G F+++ G +P P+
Sbjct: 16 TTLTADPPDGIKVFPN--EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKG 72
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 34.5 bits (78), Expect = 2e-04
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L EPPPG+ D + ++ + G T Y+ F+L+ +YPF+ P+
Sbjct: 12 HMLATEPPPGITCWQD--KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQI 68
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 34.3 bits (78), Expect = 3e-04
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L + +L + + + + Y +F FK G YP D P+
Sbjct: 13 NELNLPKTCDISFSD---PDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVK 68
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 33.6 bits (76), Expect = 4e-04
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
L+ EP PG++ + D E N + + + G + + ++G F+L+ +YP +P+
Sbjct: 12 QRLLAEPVPGIKAEPD--ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR 69
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25
kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 33.6 bits (76), Expect = 4e-04
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1 MSLMKEPPPGME-VDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
++K + D ++N + G T Y+G +QL+ K YPF+ P+
Sbjct: 14 KEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKV 73
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 33.2 bits (75), Expect = 7e-04
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L+ +P PG+ + + NL + + ++G E + Y+ F+L+ YP ++P+
Sbjct: 13 EKLVSDPVPGITAEPH--DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKV 69
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 32.7 bits (74), Expect = 7e-04
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 3 LMKEPPP-----GMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSP 57
K P G+ D + W + G + ++ + L GP YP P
Sbjct: 16 GEKGFGPESCSYGLADSDD---ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPP 72
Query: 58 EC 59
+
Sbjct: 73 KV 74
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 32.9 bits (74), Expect = 8e-04
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1 MSLMKEPPPGMEVDSDKAEQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPEC 59
L+K+ PPG+ E N+ +W ++G T Y F + +F YP P+
Sbjct: 13 QQLIKDSPPGIVAGPKS-ENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKL 70
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 32.5 bits (73), Expect = 0.001
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 19 EQNLNLWTIHMKGAEGTLYDGEEFQLQFKFGPKYPFDSPECT 60
+++ W + G GT Y+G F L P YP++ P+
Sbjct: 40 GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK 81
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 27.1 bits (59), Expect = 0.086
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 13/73 (17%)
Query: 1 MSLMKEPPPGMEVDSDKA-EQNLNLWTIHMKGAE------------GTLYDGEEFQLQFK 47
+ + + S + +L W + ++ + E L F
Sbjct: 14 RDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFS 73
Query: 48 FGPKYPFDSPECT 60
F +PFD P
Sbjct: 74 FKDNFPFDPPFVR 86
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 23.2 bits (50), Expect = 2.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 41 EFQLQFKFGPKYPFDSPE 58
EF ++F YP +PE
Sbjct: 77 EFDIEFDIPITYPTTAPE 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.135 0.417
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 234,372
Number of extensions: 7758
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 23
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)