Query psy17590
Match_columns 98
No_of_seqs 102 out of 216
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 18:00:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqr_A KIAA0907 protein; struc 98.8 2.8E-08 9.5E-13 68.0 8.3 64 11-75 36-102 (119)
2 1k1g_A SF1-BO isoform; splicin 98.7 3.8E-08 1.3E-12 68.1 6.6 65 9-73 28-100 (131)
3 2bl5_A MGC83862 protein, quaki 98.1 3.8E-06 1.3E-10 58.9 5.4 57 11-71 25-100 (140)
4 2opv_A KHSRP protein; KH domai 97.8 6.4E-05 2.2E-09 47.4 6.0 54 12-72 32-85 (85)
5 1dtj_A RNA-binding neurooncolo 97.7 0.0001 3.5E-09 45.2 6.5 56 12-73 21-76 (76)
6 1zzk_A Heterogeneous nuclear r 97.7 0.0002 6.8E-09 44.8 7.7 53 12-73 25-77 (82)
7 1ec6_A RNA-binding protein NOV 97.7 0.00036 1.2E-08 44.0 8.8 60 12-77 21-80 (87)
8 2p2r_A Poly(RC)-binding protei 97.7 0.00011 3.8E-09 45.2 6.2 53 12-73 23-75 (76)
9 1j5k_A Heterogeneous nuclear r 97.6 0.00034 1.2E-08 44.4 7.3 53 12-73 32-84 (89)
10 2hh2_A KH-type splicing regula 97.6 0.00012 4E-09 48.3 5.1 57 12-74 25-81 (107)
11 1x4n_A FAR upstream element bi 97.5 0.00043 1.5E-08 44.2 6.9 52 12-72 33-84 (92)
12 2axy_A Poly(RC)-binding protei 97.4 0.00058 2E-08 41.9 6.9 50 12-72 23-72 (73)
13 2hh3_A KH-type splicing regula 97.4 0.00069 2.4E-08 44.8 7.3 53 12-73 29-81 (106)
14 1wvn_A Poly(RC)-binding protei 97.3 0.00044 1.5E-08 43.1 5.5 53 12-73 24-76 (82)
15 2cte_A Vigilin; K homology typ 97.3 0.00086 2.9E-08 43.0 6.8 60 4-74 26-86 (94)
16 1we8_A Tudor and KH domain con 97.3 0.0018 6.2E-08 42.1 8.4 57 12-75 33-89 (104)
17 1x4m_A FAR upstream element bi 97.3 0.00031 1E-08 45.1 4.4 54 12-72 33-86 (94)
18 2ctj_A Vigilin; K homology typ 97.2 0.001 3.5E-08 43.2 6.6 59 3-72 25-85 (95)
19 2jzx_A Poly(RC)-binding protei 97.2 0.0014 4.9E-08 44.7 7.1 53 12-72 107-159 (160)
20 3krm_A Insulin-like growth fac 97.0 0.0037 1.3E-07 42.7 8.2 54 12-72 103-156 (163)
21 1vig_A Vigilin; RNA-binding pr 96.9 0.0022 7.4E-08 39.1 5.6 57 3-70 13-70 (71)
22 2ctk_A Vigilin; K homology typ 96.9 0.0032 1.1E-07 41.2 6.8 61 4-75 26-87 (104)
23 2ctl_A Vigilin; K homology typ 96.9 0.0034 1.2E-07 40.6 6.5 60 5-72 27-87 (97)
24 2ctm_A Vigilin; K homology typ 96.5 0.0084 2.9E-07 38.6 6.4 54 12-75 35-88 (95)
25 2jvz_A KH type-splicing, FAR u 96.5 0.0061 2.1E-07 41.3 5.9 54 12-72 20-73 (164)
26 1j4w_A FUSE binding protein; s 96.4 0.0099 3.4E-07 41.1 6.6 53 12-70 122-174 (174)
27 1j4w_A FUSE binding protein; s 96.4 0.016 5.6E-07 40.0 7.7 53 12-73 21-73 (174)
28 2dgr_A Ring finger and KH doma 96.4 0.0051 1.7E-07 38.9 4.6 48 12-71 28-75 (83)
29 2jvz_A KH type-splicing, FAR u 96.3 0.017 6E-07 39.0 7.1 52 12-72 109-160 (164)
30 2anr_A Neuro-oncological ventr 96.1 0.02 6.7E-07 39.6 6.8 55 12-72 24-78 (178)
31 2jzx_A Poly(RC)-binding protei 96.1 0.028 9.5E-07 38.1 7.5 52 12-74 23-74 (160)
32 2anr_A Neuro-oncological ventr 95.7 0.024 8.2E-07 39.1 5.9 54 12-72 122-175 (178)
33 3krm_A Insulin-like growth fac 95.5 0.063 2.2E-06 36.4 7.2 54 12-73 21-74 (163)
34 2ctf_A Vigilin; K homology typ 94.3 0.17 5.9E-06 32.8 6.5 52 12-77 45-97 (102)
35 2qnd_A FMR1 protein; KH domain 94.1 0.28 9.4E-06 33.3 7.6 57 12-72 85-142 (144)
36 2cpq_A FragIle X mental retard 93.5 0.1 3.5E-06 33.8 4.2 45 12-69 33-78 (91)
37 3n89_A Defective in GERM LINE 92.9 0.16 5.5E-06 40.3 5.4 62 3-70 194-259 (376)
38 2e3u_A PH-DIM2P, hypothetical 88.3 1.6 5.3E-05 31.9 6.7 45 13-70 53-101 (219)
39 2e3u_A PH-DIM2P, hypothetical 87.8 1.6 5.5E-05 31.8 6.5 45 12-72 147-191 (219)
40 3u1k_A Polyribonucleotide nucl 87.5 0.52 1.8E-05 39.5 4.1 46 12-71 585-630 (630)
41 1wjw_A Phosphoacetylglucosamin 86.7 1.5 5.1E-05 28.6 5.3 35 40-74 63-97 (112)
42 1tua_A Hypothetical protein AP 78.9 5.3 0.00018 28.6 6.0 45 12-72 116-160 (191)
43 3n89_A Defective in GERM LINE 76.0 3.9 0.00013 32.3 4.9 60 4-69 39-103 (376)
44 3h7h_B Transcription elongatio 71.2 1.3 4.5E-05 29.0 1.0 40 23-69 35-74 (106)
45 3pdk_A Phosphoglucosamine muta 65.3 12 0.00041 29.6 5.6 35 40-74 432-466 (469)
46 4hjh_A Phosphomannomutase; str 61.4 15 0.00052 29.0 5.5 42 33-74 430-475 (481)
47 2exu_A Transcription initiatio 61.3 10 0.00036 27.4 4.2 38 24-68 134-171 (200)
48 4aid_A Polyribonucleotide nucl 56.9 3.3 0.00011 35.3 1.0 47 12-72 588-634 (726)
49 3uw2_A Phosphoglucomutase/phos 55.6 17 0.00059 28.9 5.0 34 40-73 444-477 (485)
50 1wqa_A Phospho-sugar mutase; a 55.1 17 0.00057 28.4 4.7 34 40-73 420-453 (455)
51 3i3w_A Phosphoglucosamine muta 55.1 8.6 0.00029 30.2 3.1 34 40-73 408-441 (443)
52 3v4m_A Splicing factor U2AF 65 50.6 42 0.0014 20.7 5.7 54 14-67 27-80 (105)
53 3na5_A Phosphoglucomutase; iso 49.5 19 0.00064 29.3 4.3 35 40-74 532-567 (570)
54 1p5d_X PMM, phosphomannomutase 49.2 27 0.00091 27.3 5.1 34 40-73 422-455 (463)
55 2f7l_A 455AA long hypothetical 46.7 19 0.00065 28.1 3.9 32 40-71 422-453 (455)
56 2qn6_B Translation initiation 44.8 56 0.0019 20.5 5.6 32 45-76 51-83 (93)
57 1wwj_A Circadian clock protein 42.2 35 0.0012 22.4 4.0 28 46-74 9-36 (105)
58 2z0f_A Putative phosphoglucomu 38.6 42 0.0015 26.6 4.8 33 40-72 488-521 (524)
59 3i96_A Ethanolamine utilizatio 38.2 61 0.0021 21.6 4.8 26 48-74 76-101 (119)
60 1jhg_A Trp operon repressor; c 37.9 5.2 0.00018 26.0 -0.6 24 6-29 46-74 (101)
61 1t4y_A Adaptive-response senso 37.7 44 0.0015 22.0 3.9 27 47-74 13-40 (105)
62 3frw_A Putative Trp repressor 32.7 8.9 0.0003 25.4 -0.1 20 10-29 55-74 (107)
63 2krb_A Eukaryotic translation 32.1 53 0.0018 18.5 3.4 44 16-66 24-67 (81)
64 2khd_A Uncharacterized protein 32.0 1.1E+02 0.0037 20.1 5.7 47 26-72 11-57 (108)
65 3ups_A Iojap-like protein; PSI 31.4 95 0.0033 20.9 5.0 49 46-96 51-99 (136)
66 2do4_A Squamous cell carcinoma 31.2 70 0.0024 18.7 3.9 48 14-67 32-79 (100)
67 1tuo_A Putative phosphomannomu 30.3 34 0.0012 26.8 2.9 31 40-70 432-462 (464)
68 2o5a_A BH1328 protein; BHR21, 30.1 1.1E+02 0.0039 20.1 5.1 48 47-96 36-83 (125)
69 1ytb_A Protein (tata binding p 29.3 1.1E+02 0.0038 21.4 5.2 43 30-72 30-85 (180)
70 3ulh_A THO complex subunit 4; 28.8 72 0.0025 18.8 3.7 26 42-67 66-91 (107)
71 2k3i_A Uncharacterized protein 25.7 1.5E+02 0.005 19.5 5.7 46 27-72 10-55 (109)
72 3eik_A Tata-box-binding protei 25.6 1.3E+02 0.0045 21.8 5.2 43 30-72 68-123 (218)
73 2dka_A Phosphoacetylglucosamin 25.5 70 0.0024 25.6 4.0 31 40-70 513-543 (544)
74 3cgi_A Propanediol utilization 25.3 1.3E+02 0.0046 19.9 4.8 27 47-74 80-106 (124)
75 2d9p_A Polyadenylate-binding p 25.3 82 0.0028 18.4 3.5 48 14-68 30-77 (103)
76 1m5s_A Formylmethanofuran--tet 24.9 85 0.0029 24.1 4.1 20 45-64 243-262 (297)
77 3tcm_A Alanine aminotransferas 24.3 71 0.0024 24.6 3.7 47 30-76 450-497 (500)
78 2id1_A Hypothetical protein; a 24.1 1.1E+02 0.0038 20.4 4.2 48 47-96 36-83 (130)
79 1ais_A TBP, protein (tata-bind 23.8 78 0.0027 22.1 3.6 43 30-72 125-180 (182)
80 2fy1_A RNA-binding motif prote 23.2 1.4E+02 0.0046 18.3 4.5 49 14-68 22-70 (116)
81 1j2j_B ADP-ribosylation factor 22.6 38 0.0013 19.1 1.4 27 50-76 16-42 (45)
82 3ihj_A Alanine aminotransferas 22.3 92 0.0031 24.0 4.0 23 53-75 473-495 (498)
83 3md1_A Nuclear and cytoplasmic 22.0 1.1E+02 0.0038 16.9 3.7 26 42-67 39-64 (83)
84 1wz4_A Major surface antigen; 21.8 21 0.00072 17.9 0.2 10 29-38 14-23 (26)
85 2cxi_A Phenylalanyl-tRNA synth 21.6 2E+02 0.0067 21.9 5.7 37 36-72 219-256 (348)
86 2hl0_A Threonyl-tRNA synthetas 20.9 64 0.0022 22.2 2.5 26 47-72 41-70 (143)
87 2z8u_A Tata-box-binding protei 20.7 1.5E+02 0.0053 20.7 4.6 43 30-72 129-184 (188)
88 1pch_A Phosphocarrier protein; 20.2 1.2E+02 0.0041 18.5 3.6 54 16-72 21-82 (88)
No 1
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=2.8e-08 Score=67.98 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=51.4
Q ss_pred ccHHHHHHhHhhhcceeeeece---eeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGI---YIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~---y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~ 75 (98)
-.+.++.+|+++|||.|.++|+ ++.+.... ..+-+||++|+|.+.+++++|+.+|+.|+.+--.
T Consensus 36 pgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~-e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~~v~~ 102 (119)
T 2yqr_A 36 PGCSYLQHIQIETGAKVFLRGKGSGCIEPASGR-EAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHA 102 (119)
T ss_dssp GGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSS-CCSSBCEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHCCEEEEecCCcccccccccc-ccCCCcEEEEEeCCHHHHHHHHHHHHHHhhchHH
Confidence 3578999999999999999976 33333322 2346899999999999999999999999986443
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.69 E-value=3.8e-08 Score=68.09 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=50.7
Q ss_pred HhccHHHHHHhHhhhcceeeeeceeeC-CCCC-CC------CCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 9 LALLGEALAQISEYSEAGITVRGIYIP-PGKN-PP------EGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 9 ~vT~~~tl~~I~e~Tga~It~KG~y~p-pg~~-p~------~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.=..+.|+.+|+++|||.|.++|..-- .++. .. ..+.+||++|+|++++.+++|+.+|+.++.+.
T Consensus 28 IGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 28 IGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQG 100 (131)
T ss_dssp HCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTTT
T ss_pred ECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 336789999999999999999885321 1111 11 12468999999999999999999999999763
No 3
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.12 E-value=3.8e-06 Score=58.88 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=46.3
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCC------------CC--CCCCceEEEEEeCCHH-----HHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKN------------PP--EGERKLFLAIESTNEL-----AVSKAKVEITRLIK 71 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~------------p~--~ge~kLYL~Ieg~te~-----~V~~A~~eIk~ii~ 71 (98)
-.+.|+.+|+++|||.|.+||. |+. |. ..+-+||++|+|.+.+ .+++|+++|+.++.
T Consensus 25 PrG~t~K~ie~eTg~kI~IrGk----GS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 25 PRGLTAKQLEAETGCKIMVRGK----GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp TTHHHHHHHHHHHSEEEEEEST----TSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHHHSS
T ss_pred CCcchHHHHHHHHCCeEEEecC----CCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHHHCC
Confidence 3789999999999999999985 321 11 1346799999998764 89999999999986
No 4
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=97.77 E-value=6.4e-05 Score=47.41 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=41.8
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|++.|||.|.+-. .+..+...++ .+.|.| +.++|++|+..|++++.|
T Consensus 32 gG~~Ik~I~~~tga~I~i~~----~~~~~~~~er--~v~I~G-~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 32 GGETIKQLQERAGVKMILIQ----DGSQNTNVDK--PLRIIG-DPYKVQQACEMVMDILRE 85 (85)
T ss_dssp TTHHHHHHHHHHTCEEEECS----SSCSSTTSCE--EEEEEE-CHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCEEEEcC----CCCCCCCCce--EEEEEe-CHHHHHHHHHHHHHHhcC
Confidence 57899999999999999854 2222333445 466789 999999999999998753
No 5
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=97.75 E-value=0.0001 Score=45.16 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=42.7
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.+.++.+|++.|||.|.+-. ...+.++...-.+.|.|. .++|++|+.+|.+++.|+
T Consensus 21 gG~~Ik~I~~~tga~I~i~~-----~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ee 76 (76)
T 1dtj_A 21 GGKTLVEYQELTGARIQISK-----KGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYE 76 (76)
T ss_dssp TTHHHHHHHHHHCCEEEECC-----TTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC--
T ss_pred CchHHHHHHHHhCCEEEECc-----CCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcC
Confidence 47899999999999998742 222334455567888997 889999999999988663
No 6
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=97.73 E-value=0.0002 Score=44.81 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=42.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.++++.+|++.|||.|.+.. +.++...-.+.|.| +.++|++|+.+|.+++.+.
T Consensus 25 gG~~Ik~I~~~tga~I~i~~--------~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 25 GGQRIKQIRHESGASIKIDE--------PLEGSEDRIITITG-TQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp GGHHHHHHHHHHCCEEEECC--------TTSCSSEEEEEEEE-CHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHCCEEEEcC--------CCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999853 11233334688899 5999999999999998863
No 7
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=97.71 E-value=0.00036 Score=43.99 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=47.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHh
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELIKL 77 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~~~ 77 (98)
.++++.+|++.|||.|.+-. ...+.++...-.+.|.|. .++|+.|+.+|.+++.+.-.+-
T Consensus 21 gG~~Ik~I~~~tga~I~I~~-----~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~~~r 80 (87)
T 1ec6_A 21 GGKTLVEYQELTGARIQISK-----KGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQGVR 80 (87)
T ss_dssp GGHHHHHHHHHHCCEEEECC-----TTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHhCCEEEEcc-----CCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccccc
Confidence 47899999999999998842 222334455567888997 8899999999999999876654
No 8
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=97.70 E-value=0.00011 Score=45.24 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=42.6
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.+.++.+|++.|||.|.+-. +.++...-.+.|.|. .++|++|+.+|.+++.++
T Consensus 23 gG~~Ik~I~~~tga~I~i~~--------~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 23 QGAKINEIRQMSGAQIKIAN--------PVEGSTDRQVTITGS-AASISLAQYLINVRLSSE 75 (76)
T ss_dssp GGHHHHHHHHHHCCEEEECC--------CCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHCCEEEEcC--------CCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHHcc
Confidence 47899999999999999964 123334446788997 999999999999998764
No 9
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=97.57 E-value=0.00034 Score=44.39 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=42.3
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.++++.+|++.|||.|.+... .++...-.+.|.|. .++|++|+.+|.+++.+.
T Consensus 32 gG~~Ik~I~~~tga~I~I~~~--------~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 32 GGQRIKQIRHESGASIKIDEP--------LEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp GGHHHHHHHHHTCCEEEECSC--------CSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHhCCeEEecCC--------CCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 578999999999999998531 12333346778897 899999999999999874
No 10
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=97.56 E-value=0.00012 Score=48.27 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=44.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
.++++.+|++.|||.|.+... ..+.++..--.+.|.| +.++|++|+.+|.+++.+..
T Consensus 25 gG~~Ik~I~~~TGa~I~I~~~-----~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 25 GGENVKAINQQTGAFVEISRQ-----LPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp TTCHHHHHHHHSSSEEEECCC-----CCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCSCC
T ss_pred CcHHHHHHHHHhCCEEEEcCc-----cCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhccc
Confidence 468999999999999998542 1222333445688899 99999999999999988754
No 11
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=97.48 E-value=0.00043 Score=44.23 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=42.0
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|+++|||.|.+... .++...-.+.|.|. .++|++|+.+|.+++.+
T Consensus 33 gG~~Ik~I~~~tga~I~I~~~--------~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 33 GGEQISRIQQESGCKIQIAPD--------SGGLPERSCMLTGT-PESVQSAKRLLDQIVEK 84 (92)
T ss_dssp SSHHHHHHHHHSCCEEEECSC--------CTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhCCEEEEcCC--------CCCCCccEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 478999999999999998532 12344456788897 89999999999999876
No 12
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=97.45 E-value=0.00058 Score=41.88 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=41.0
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|++.|||.|.+-.. +.+.--+.|.|. .++|++|+.+|.++|.|
T Consensus 23 gG~~Ik~I~~~tga~I~i~~~----------~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 23 KGESVKKMREESGARINISEG----------NCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp GGHHHHHHHHHHCCEEEECSS----------CCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCEEEEecC----------CCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 468999999999999998421 233345789998 99999999999999976
No 13
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=97.40 E-value=0.00069 Score=44.75 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=41.4
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.++++.+|+++|||.|.+... . ++.+--.+.|.|. .++|++|+.+|++++.+.
T Consensus 29 gG~~Ik~I~~~TGakI~I~~~-----~---~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 29 SGEMIKKIQNDAGVRIQFKQD-----D---GTGPEKIAHIMGP-PDRCEHAARIINDLLQSL 81 (106)
T ss_dssp TTHHHHHHHHHHTCEEEECSS-----C---SSSSEEEEEEESS-HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCcEEEEecC-----C---CCCceeEEEEEeC-HHHHHHHHHHHHHHHhcc
Confidence 468999999999999999531 1 1223445778886 899999999999998864
No 14
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=97.34 E-value=0.00044 Score=43.10 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=40.8
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.++++.+|++.|||.|.+-.. .++...-.+.|.|.. ++|++|+.+|.+++.++
T Consensus 24 gG~~Ik~I~~~sga~I~i~~~--------~~~~~~r~v~I~G~~-~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 24 QGANINEIRQMSGAQIKIANP--------VEGSSGRQVTITGSA-ASISLAQYLINARLSSE 76 (82)
T ss_dssp GGHHHHHHHHHHCCEEEECCC--------CTTCSEEEEEEEECH-HHHHHHHHHHHHHTC--
T ss_pred CchhHHHHHHHhCCEEEEecC--------CCCCCceEEEEEcCH-HHHHHHHHHHHHHHHhh
Confidence 468999999999999998542 133334457788965 99999999999998876
No 15
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.32 E-value=0.00086 Score=43.04 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=44.8
Q ss_pred hhHHHHhcc-HHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 4 SPIHLLALL-GEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 4 q~~R~~vT~-~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
+.++.-|=+ +.++.+|+++|||.|.+- +. ++..=.+.|.|+ .+.|++|+.+|..++.+..
T Consensus 26 ~~ig~IIG~gG~~Ik~I~~etg~~I~i~-----~~-----~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 26 EHHRFVIGKNGEKLQDLELKTATKIQIP-----RP-----DDPSNQIKITGT-KEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp TTHHHHHCSSSCHHHHHHHHTTCCCBCC-----CT-----TSSCCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHeeeeECCCChhHHHHHHHHCCEEEeC-----CC-----CCCCCeEEEEEC-HHHHHHHHHHHHHHhhccc
Confidence 344555544 589999999999999982 11 111126788998 9999999999999998744
No 16
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.31 E-value=0.0018 Score=42.15 Aligned_cols=57 Identities=25% Similarity=0.147 Sum_probs=41.9
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~ 75 (98)
.++++.+|++.|||.|.+-..- ...+..--.+.|.|..+ .|++|+.+|.+++.+.-.
T Consensus 33 gG~~Ik~I~~~tga~I~I~~~~------~~~~~~~~~V~I~G~~~-~v~~A~~~I~~~i~e~~~ 89 (104)
T 1we8_A 33 GGETIRSICKASGAKITCDKES------EGTLLLSRLIKISGTQK-EVAAAKHLILEKVSEDEE 89 (104)
T ss_dssp TSHHHHHHHHHHCCEEEECCSS------CCSSSSEEEEEEEEEHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCEEEEecCC------CCCCCCcceEEEEcCHH-HHHHHHHHHHHHHhhChH
Confidence 4789999999999999985321 11111234577889877 799999999999976543
No 17
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.29 E-value=0.00031 Score=45.12 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=40.2
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|++.|||.|.+-.. +......++ .+.|.| +.+.|++|+.+|.+++.+
T Consensus 33 gG~~Ik~I~~~tga~I~I~~~----~~~~~~~~r--~v~I~G-~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 33 GGETIKQLQERAGVKMVMIQD----GPQNTGADK--PLRITG-DPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp SSSHHHHHHHHHTSEEEECCS----CCCSSCSCE--EEEEEE-CTTTHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHCCeEEecCC----CCCCCCCce--EEEEEe-CHHHHHHHHHHHHHHHhc
Confidence 578999999999999988421 111112333 467889 888999999999999864
No 18
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.24 E-value=0.001 Score=43.16 Aligned_cols=59 Identities=25% Similarity=0.253 Sum_probs=44.8
Q ss_pred chhHHHHhcc-HHHHHHhHhhh-cceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 3 KSPIHLLALL-GEALAQISEYS-EAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 3 pq~~R~~vT~-~~tl~~I~e~T-ga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
|...|..+-. +.++.+|+|+| ||.|.+ |+ +|...-.+.|.|+++ +|++|+.+|+.++.+
T Consensus 25 ~~~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~-----~g~~~~~V~I~G~~~-~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 25 AKLHNSLIGTKGRLIRSIMEECGGVHIHF-----PV-----EGSGSDTVVIRGPSS-DVEKAKKQLLHLAEE 85 (95)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHTSCEEEC-----CC-----TTTTCCEEEEESCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHhhhCCCCchhHHHHHHHcCCCEEEe-----CC-----CCCCcceEEEEcCHH-HHHHHHHHHHHHHhh
Confidence 3445555544 48999999999 999965 32 233344688999988 999999999999876
No 19
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.17 E-value=0.0014 Score=44.65 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=42.5
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.+.++.+|++.|||.|.+-+..+| ..++ =.+.|.| +.++|++|+.+|.+++.|
T Consensus 107 gG~~Ik~i~~~tga~I~i~~~~~~-----~~~~--~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 107 GGCKIKEIRESTGAQVQVAGDMLP-----NSTE--RAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp GGHHHHHHHHHHSSEECCCCCCST-----TCCE--EEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCeEEECCCCCC-----CCCc--eEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 578999999999999998654322 2233 4578899 899999999999999876
No 20
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.04 E-value=0.0037 Score=42.68 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=41.9
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.+.++.+|++.|||.|.+-. ...|.. ...-.+.|.| +.++|++|..+|.+++.+
T Consensus 103 gG~~I~~i~~~tga~I~i~~-----~~~~~~-~~~~~v~I~G-~~~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 103 GGKTVNELQNLTAAEVVVPR-----DQTPDE-NDQVIVKIIG-HFYASQMAQRKIRDILAQ 156 (163)
T ss_dssp GGHHHHHHHHHHCCEEECCT-----TCCCCT-TSEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhCCeEEECC-----CCCCCC-CCceEEEEEe-CHHHHHHHHHHHHHHHHH
Confidence 47899999999999997743 222222 2334688999 789999999999999986
No 21
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=96.94 E-value=0.0022 Score=39.14 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=41.5
Q ss_pred chhHHHHh-ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 3 KSPIHLLA-LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 3 pq~~R~~v-T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
|..+|.-+ ..+.++.+|+++|||.|.+- + ++++.=.+.|.|+. ++|++|+.+|..++
T Consensus 13 ~~~ig~iIG~gG~~I~~I~e~tg~~I~i~-----~-----~g~~~~~V~I~G~~-~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 13 HKFHRHLIGKSGANINRIKDQYKVSVRIP-----P-----DSEKSNLIRIEGDP-QGVQQAKRELLELA 70 (71)
T ss_dssp SSHHHHHTCSSCCHHHHHHHHTCCEEECC-----C-----CCSSSEEEEEEESS-HHHHHHHHHHHHTC
T ss_pred HHHhhhhcCCCCccHHHHHHHHCCEEEEC-----C-----CCCcccEEEEEcCH-HHHHHHHHHHHHHh
Confidence 34455555 45789999999999999762 2 12233367889994 78999999998763
No 22
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.94 E-value=0.0032 Score=41.24 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=44.5
Q ss_pred hhHHHHhc-cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 4 SPIHLLAL-LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 4 q~~R~~vT-~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~ 75 (98)
..+|.-|= .+.++.+|+++|||.|.+- +++. +. =.+.|.|+. ++|++|+.+|..++.+.-.
T Consensus 26 ~~ig~IIG~gG~~Ir~I~eetg~~I~I~----~~g~----~~--~~V~I~G~~-e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 26 DLHRYVIGQKGSGIRKMMDEFEVNIHVP----APEL----QS--DIIAITGLA-ANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp HHHHHHHCSSSHHHHHHHHHTCCEEECC----CTTT----TC--CEEEEEECH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHccceeCCCchHHHHHHHHHCCEEEec----CCCC----Cc--ceEEEEcCH-HHHHHHHHHHHHHHhhHHH
Confidence 34444443 4899999999999999872 1222 11 268888985 8999999999999987543
No 23
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.88 E-value=0.0034 Score=40.57 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=43.3
Q ss_pred hHHHHhc-cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 5 PIHLLAL-LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 5 ~~R~~vT-~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++.-|= .+.++.+|++.|||.|.+- +...+.. ..-.+.|.|+ .+.|++|+.+|..++.+
T Consensus 27 ~ig~IIGkgG~~Ik~I~~etg~~I~i~-----~~g~~~~--~~~~V~I~G~-~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 27 YHPKIIGRKGAVITQIRLEHDVNIQFP-----DKDDGNQ--PQDQITITGY-EKNTEAARDAILRIVGE 87 (97)
T ss_dssp THHHHSCSSSCHHHHHHHHHTCEEECC-----CTTTCSS--CSSEEEEESC-HHHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCchhHHHHHHHHCCEEEec-----CCCCCCC--CccEEEEEeC-HHHHHHHHHHHHHHHHH
Confidence 3333343 3789999999999999873 2222222 3345778898 88999999999999876
No 24
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.53 E-value=0.0084 Score=38.61 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=41.0
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~ 75 (98)
.+.++.+|++.|||.|.+ |+.. +...-.+.|.|+ .+.|++|+.+|..++.|...
T Consensus 35 gG~~Ir~I~e~tg~~I~i-----~~~g----~~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 35 RGKAIRKIMDEFKVDIRF-----PQSG----APDPNCVTVTGL-PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp SSCHHHHHHHHHTCEEEC-----CCTT----CSCTTEEEEESC-HHHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHCCeEEe-----cCCC----CCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999988 2211 112335778898 68999999999999887553
No 25
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=96.49 E-value=0.0061 Score=41.33 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=40.2
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|++.|||.|.+- +.+ +.++..--.+.|.| +.+.|++|+..|.+++.+
T Consensus 20 ~G~~Ik~i~~~tg~~I~i~----~~~--~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 20 GGETIKQLQERAGVKMILI----QDG--SQNTNVDKPLRIIG-DPYKVQQACEMVMDILRE 73 (164)
T ss_dssp TTHHHHHHHHTSCSEEEEC----CCT--TSSSSSCEEEEEEE-CHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHhCCeEEEe----cCC--CCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHh
Confidence 5789999999999999872 111 22223333567889 789999999999998875
No 26
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=96.41 E-value=0.0099 Score=41.05 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=39.7
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
.+.++.+|++.|||.|.+-.. ..+.++...=.+.|.| +.++|++|+.+|.++|
T Consensus 122 gG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 122 GGETIKSISQQSGARIELQRN-----PPPNADPNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp GGHHHHHHHHHHCCEEEEECC-----CTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHCCEEEECCC-----CCCCCCCCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 578999999999999988542 1122222233578889 8999999999998864
No 27
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=96.41 E-value=0.016 Score=39.95 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=41.5
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.++++.+|++.|||.|.+... .+ +..--.+.|.|+ .+.|++|+.+|.+++.+.
T Consensus 21 gG~~Ik~i~~~tg~~I~i~~~------~~--~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~ 73 (174)
T 1j4w_A 21 NGEMIKKIQNDAGVRIQFKPD------DG--TTPERIAQITGP-PDRAQHAAEIITDLLRSV 73 (174)
T ss_dssp GGHHHHHHHHHHCCEEEEECC------TT--SCSEEEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhCCEEEEecC------CC--CCCccEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 578999999999999998531 11 223345678898 899999999999999864
No 28
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.40 E-value=0.0051 Score=38.91 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=36.6
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIK 71 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~ 71 (98)
.++++.+|+++|||.|.+- .. .+++ .+.|.|.. ++|++|+.+|.+++.
T Consensus 28 gG~tIk~Iqe~Tga~I~I~-----~~----~~~~--~v~ItG~~-e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 28 KGATIKRIQQRTHTYIVTP-----GR----DKEP--VFAVTGMP-ENVDRAREEIEAHIT 75 (83)
T ss_dssp TTSSHHHHHHHTTCEEECC-----CS----SSCC--EEEEEECT-TTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhCCeEEec-----CC----CCCC--eEEEEcCH-HHHHHHHHHHHHHHh
Confidence 4678999999999999982 11 1233 37788876 799999999988643
No 29
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=96.26 E-value=0.017 Score=39.03 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=40.6
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.+.++.+|++.|||.|.+-.. . + +...=.+.|.|. .++|+.|+.+|.+++.+
T Consensus 109 ~G~~I~~i~~~tg~~I~i~~~-----~-~--~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 109 SGEMIKKIQNDAGVRIQFKQD-----D-G--TGPEKIAHIMGP-PDRCEHAARIINDLLQS 160 (164)
T ss_dssp SSHHHHHHHHHTCCEEEECCC-----C-T--TSSEEEEEEESC-HHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHCCeEEEeCC-----C-C--CCCcEEEEEEcC-HHHHHHHHHHHHHHHhh
Confidence 478999999999999987421 1 1 222345788897 88999999999999876
No 30
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=96.11 E-value=0.02 Score=39.60 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=40.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|++.|||.|.+- +.....++..--.+.|.|. .+.|.+|+..|.+++.+
T Consensus 24 gG~~Ik~i~~~tg~~I~i~-----~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 24 GGQTIVQLQKETGATIKLS-----KSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIRE 78 (178)
T ss_dssp GGHHHHHHHHHHCCEEEEC-----CTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHhCCeEEEe-----cCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 5789999999999999873 2111222333335678896 78899999999988865
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=96.10 E-value=0.028 Score=38.10 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=42.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
.++++.+|++.|||.|.+-.. +.+.-.+.|.|+ .+.|++|+..|.+++.+..
T Consensus 23 gG~~Ik~i~~~tg~~I~i~~~----------~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 23 KGESVKKMREESGARINISEG----------NCPERIITLAGP-TNAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp GGHHHHHHHHHHCSEEEEECC----------TTTEEEEEEEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCEEEEcCC----------CCCceEEEEEeC-HHHHHHHHHHHHHHHHhhc
Confidence 578999999999999998531 233446778997 8899999999999998864
No 32
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=95.72 E-value=0.024 Score=39.14 Aligned_cols=54 Identities=19% Similarity=0.088 Sum_probs=39.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.+.++.+|++.|||.|.+-.. ...+. ...=.+.|.|.. ++|++|+.+|.+++.|
T Consensus 122 gG~~Ik~i~~~tga~I~i~~~----~~~~~--~~~~~v~I~G~~-~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 122 GGATVKAIMEQSGAWVQLSQK----PDGIN--LQNRVVTVSGEP-EQNRKAVELIIQKIQE 175 (178)
T ss_dssp GGHHHHHHHHHSSCEEEECCC----C------CCEEEEEEESSH-HHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHCCEEEEeCC----CCCCC--CCceEEEEEcCH-HHHHHHHHHHHHHHHh
Confidence 578999999999999987321 11122 223356788976 7999999999999875
No 33
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=95.47 E-value=0.063 Score=36.40 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=42.2
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
+++++.+|++.|||.|.+--. . .++..--.+.|.| +.+++.+|...|.+++.+.
T Consensus 21 ~G~~Ik~i~~~tg~~I~i~~~-----~--~~~~~~r~v~I~G-~~e~v~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 21 KGQHIKQLSRFASASIKIAPP-----E--TPDSKVRMVIITG-PPEAQFKAQGRIYGKLKEE 74 (163)
T ss_dssp GGHHHHHHHHHHTCEEEECCC-----S--STTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHCCeEEEcCC-----C--CCCCCceEEEEEc-CHHHHHHHHHHHHHHHhcc
Confidence 578999999999999988431 1 1334445688899 8899999999999988764
No 34
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.27 E-value=0.17 Score=32.79 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=40.3
Q ss_pred cHHHHHHhHhh-hcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHh
Q psy17590 12 LGEALAQISEY-SEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELIKL 77 (98)
Q Consensus 12 ~~~tl~~I~e~-Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~~~ 77 (98)
+++++.+|.+. +++.| .||.+ +. -+.|+|+ .+.|++|+.+|..++++.-.+.
T Consensus 45 ~G~~Ik~i~~~~~~v~I-----~fp~~------~~--~ItI~G~-~~~V~~a~~~I~~~v~el~~~~ 97 (102)
T 2ctf_A 45 KGQNLAKITQQMPKVHI-----EFTEG------ED--KITLEGP-TEDVSVAQEQIEGMVKDLINRS 97 (102)
T ss_dssp TTCHHHHHHHHCSSSEE-----EECSS------SC--EEEEEEC-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHcCCcEE-----EeCCC------CC--EEEEECC-HHHHHHHHHHHHHHHHHHHhhc
Confidence 56899999995 68777 36651 22 5899999 8889999999999998754443
No 35
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=94.12 E-value=0.28 Score=33.34 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=39.2
Q ss_pred cHHHHHHhHhhhcc-eeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEA-GITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga-~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
++.++..|++.||| .|.+.+. +.......++.-=+.|.| +.++|++|..+|..+|.+
T Consensus 85 ~G~nIr~i~~~tG~~~I~i~~~---~~~~~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 85 NGKLIQEIVDKSGVVRVRIEAE---NEKNVPQEEGMVPFVFVG-TKDSIANATVLLDYHLNY 142 (144)
T ss_dssp GGHHHHHHHHHHTCSEEEEEEE---CTTCCCCCTTEEEEEEEE-EHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCEEEEEcCC---CCCCccccCCeeEEEEEe-CHHHHHHHHHHHHHHHHh
Confidence 47899999999997 8886542 111111223323367888 677999999999988763
No 36
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.49 E-value=0.1 Score=33.79 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=36.2
Q ss_pred cHHHHHHhHhhhcce-eeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAG-ITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRL 69 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~-It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~i 69 (98)
.+.++.+|.|.||+. |.+-- ++. .+.|.|.+.+++++|+.+|+.+
T Consensus 33 gGk~Ik~I~e~tGv~~IdI~e-----------ddG--~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 33 HGSNIQQARKVPGVTAIELDE-----------DTG--TFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp TTHHHHHHHTSTTEEEEEEET-----------TTT--EEEEEESSHHHHHHHHHHHSCC
T ss_pred CcHHHHHHHHHhCCeEEEEEc-----------CCC--EEEEEECCHHHHHHHHHHHHhh
Confidence 568999999999997 99831 123 4678899999999999998754
No 37
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=92.93 E-value=0.16 Score=40.27 Aligned_cols=62 Identities=18% Similarity=0.071 Sum_probs=41.9
Q ss_pred chhHHHHhccH---HHHHHhHhhhcceeeeeceeeCCCCCCCC-CCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 3 KSPIHLLALLG---EALAQISEYSEAGITVRGIYIPPGKNPPE-GERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 3 pq~~R~~vT~~---~tl~~I~e~Tga~It~KG~y~ppg~~p~~-ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
|+..+.-+-++ .++.+|.++|||.|. ||+...+.+ .+.+--+.|.| +++.|..|...|.++|
T Consensus 194 ~~~H~~IIGk~G~n~~IkkIr~eTGv~I~-----FP~~~d~~d~~~~~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 194 TYYVDQVLGSSSTAQLMPVIERETTTIIS-----YPCYNNRNETRGNIYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp GGGHHHHTCCTTSCCHHHHHHHHHTCEEE-----CC---------CCEEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhcCCCcchHHHHHHHhhCCEEE-----CCCCCCcccccCCceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 34445555555 578999999999998 465433322 23455688999 9999999999998875
No 38
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=88.34 E-value=1.6 Score=31.91 Aligned_cols=45 Identities=27% Similarity=0.288 Sum_probs=36.9
Q ss_pred HHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCC----HHHHHHHHHHHHHHH
Q psy17590 13 GEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTN----ELAVSKAKVEITRLI 70 (98)
Q Consensus 13 ~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~t----e~~V~~A~~eIk~ii 70 (98)
++++..|+|.|||.|.+-- .+.. +.|.+.+ ..++++|+..|+.+.
T Consensus 53 Gk~Ik~I~e~tgvkI~I~~-----------~~g~--V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 53 GQTKKEIEKRTKTKITIDS-----------ETGE--VWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp GHHHHHHHHHHTEEEEECT-----------TTCE--EEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcEEEEEc-----------CCCE--EEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999721 2333 4577877 899999999999988
No 39
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=87.77 E-value=1.6 Score=31.82 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=37.5
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
++.|+..|.+.|||.|.+-| . .+.|-| +...|+.|...|.++|.+
T Consensus 147 ~G~tik~ie~~Tg~~I~v~~-------------~--~v~i~G-~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 147 KGRTRQIIEEMSGASVSVYG-------------K--TVAIIG-NPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp GGHHHHHHHHHHCCEEEEET-------------T--EEEEEE-CHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHhCceEEECC-------------e--EEEEEe-CHHHHHHHHHHHHHHHcC
Confidence 57899999999999999964 2 288888 566779999999999865
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=87.52 E-value=0.52 Score=39.47 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=36.2
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIK 71 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~ 71 (98)
.+.++.+|+|+|||.|.+-- +- -+.|.|++.++.++|+..|+.|++
T Consensus 585 gG~~Ik~I~e~tg~~I~I~d------------~G--~V~I~~~~~~~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 585 GGYNLKKLQAETGVTISQVD------------EE--TFSVFAPTPSAMHEARDFITEICK 630 (630)
T ss_dssp GGHHHHHHHHHHCCEEEECS------------SS--EEEEEESSHHHHHHHHHHTTC---
T ss_pred CChhHHHHHHHHCCEEEEcC------------Cc--EEEEEeCCHHHHHHHHHHHHHHhC
Confidence 56899999999999998741 11 467899999999999999988763
No 41
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=86.67 E-value=1.5 Score=28.57 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 40 p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
|...||+|-+.+||.+++.+++-.+++.+++.+.+
T Consensus 63 pSGTEP~irvy~Ea~~~~~~~~~~~~~~~~i~~~~ 97 (112)
T 1wjw_A 63 PSGTEDIVRVYAEANSQESADRLAYEVSLLVFQLA 97 (112)
T ss_dssp CSSSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCccEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 55679999999999999999988888888888754
No 42
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=78.92 E-value=5.3 Score=28.60 Aligned_cols=45 Identities=27% Similarity=0.167 Sum_probs=36.4
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
++.|+..|.+.|||.|.+-|. .++|-| +...++.|..-|..+|..
T Consensus 116 ~G~tik~iE~~Tg~~I~v~~~---------------~v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 116 GGRARRTIEEMTDTYINVGEY---------------EVAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp GGHHHHHHHHHHTCEEEECSS---------------EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHCceEEEcCC---------------EEEEEe-ChHHHHHHHHHHHHHHcC
Confidence 567999999999999999652 577888 566678888888888753
No 43
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=75.99 E-value=3.9 Score=32.32 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=41.9
Q ss_pred hhHHHHhcc-H--HHHHHhHhhhcceeeeeceeeCCCC--CCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q psy17590 4 SPIHLLALL-G--EALAQISEYSEAGITVRGIYIPPGK--NPPEGERKLFLAIESTNELAVSKAKVEITRL 69 (98)
Q Consensus 4 q~~R~~vT~-~--~tl~~I~e~Tga~It~KG~y~ppg~--~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~i 69 (98)
+..+.-+-+ + +.+.+|+++|||.|.. |+.. ...+.++.=-+.|.|. .+.|++|+..|..+
T Consensus 39 ~~Hs~IIGkgG~~sNIkkImeEtgv~I~f-----PD~~~~~~~~~~ks~~VtItG~-~enVE~AR~~I~~l 103 (376)
T 3n89_A 39 QYYSLMTSDNGDHENVASIMAETNTLIQL-----PDRSVGGTTPDPFAQQVTITGY-FGDVDRARMLMRRN 103 (376)
T ss_dssp GGHHHHHSCCSSSCSHHHHHHHHTCEEEC-----CCCCCCSSSCCTTTTEEEEEEE-HHHHHHHHHHHHHS
T ss_pred hhhhhhccCCChHHHHHHHHHHhCCeEEC-----CCCcccccCCcCCCCeEEEEcC-HHHHHHHHHHHHhc
Confidence 344444444 3 7999999999999975 5544 2223345556888886 56899999999874
No 44
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=71.18 E-value=1.3 Score=29.00 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=31.4
Q ss_pred hcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q psy17590 23 SEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRL 69 (98)
Q Consensus 23 Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~i 69 (98)
++.-+.++-.|.|++ -|=|++||+.++..|..|+.-|..+
T Consensus 35 ~~~~l~I~Si~~~~~-------lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 35 TDTPLQIKSVVAPEH-------VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp SSSCCCCCEEEECTT-------CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred cCCCcceEEEEecCC-------CceEEEEEeCCHHHHHHHHhcccce
Confidence 355666777777766 3669999999999999999877654
No 45
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=65.31 E-value=12 Score=29.63 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=31.4
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 40 p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
|...||.|-+.+||.|++.+++-.+++.++|++.+
T Consensus 432 pSgTEP~lRv~~Ea~~~~~~~~l~~~~~~~i~~~~ 466 (469)
T 3pdk_A 432 PSGTEPLIRVMAEAPTQEVCDAYVHRIVEVVKAEV 466 (469)
T ss_dssp CCSSSCCEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHh
Confidence 66789999999999999999999999999988754
No 46
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=61.40 E-value=15 Score=28.95 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=34.2
Q ss_pred eeCCCCC----CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 33 YIPPGKN----PPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 33 y~ppg~~----p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
+++.|.- |...||+|-+.+|+.|++.+++-.+++.++|++.+
T Consensus 430 ~~~dg~wvlvRpSgTEP~lrvy~Ea~s~e~~~~l~~~~~~~i~~~~ 475 (481)
T 4hjh_A 430 FFQSGNAVHYRASGNAPELRCYVESSDDTQAAKLQALGLEIARKAL 475 (481)
T ss_dssp EETTSCEEEEEECSSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCcEEEEecCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 4466642 66778999999999999999998888888888743
No 47
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=61.32 E-value=10 Score=27.37 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=29.9
Q ss_pred cceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q psy17590 24 EAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITR 68 (98)
Q Consensus 24 ga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ 68 (98)
+.-+.++-.|.|++- |=|++||+.++..|.+|++-|..
T Consensus 134 ~~~l~I~Si~~~d~l-------kGYIyVEA~~~~~V~~ai~Gi~~ 171 (200)
T 2exu_A 134 KKKLKILSIFQRDNY-------TGRIYIEAPKQSVIEKFCNGVPD 171 (200)
T ss_dssp SSCCCCCEEECCTTS-------TTEEEEECSCHHHHHHHHTTCTT
T ss_pred CCCccEEEEEecCCC-------cEEEEEEECCHHHHHHHHhhhhh
Confidence 567777888887752 33999999999999999876643
No 48
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=56.94 E-value=3.3 Score=35.34 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=13.5
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.+.++..|+|+||+.|.+.- + =-+.|.+.+.+++++|+..|+.+..+
T Consensus 588 gg~~i~~i~~~tg~~idi~d------------d--G~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 588 GGKVIREIVATTGAKVDIND------------D--GVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp ----------------------------------------CCSCHHHHHHHHHC-------
T ss_pred CchhHHHHHHHHCCceeEEC------------C--ceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 35689999999999997531 1 12478899999999999999998763
No 49
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=55.59 E-value=17 Score=28.92 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 40 p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
|...||.|-+.+||.|++.+++-.+++.++|++.
T Consensus 444 pSgTEP~lrv~~Ea~~~~~~~~l~~~~~~~i~~~ 477 (485)
T 3uw2_A 444 SSNTTPVVVLRFEATSDAALARIQDDFRRALKAA 477 (485)
T ss_dssp ECSSSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 6678999999999999999999888888888763
No 50
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=55.07 E-value=17 Score=28.43 Aligned_cols=34 Identities=9% Similarity=-0.016 Sum_probs=28.5
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 40 p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
|...||+|-+.+|+.+++.+++-.+++.+++.+.
T Consensus 420 pSgTEP~irvy~Ea~~~~~~~~l~~~~~~~i~~~ 453 (455)
T 1wqa_A 420 ASGTEPIIRIFSEAKSKEKAQEYLNLGIELLEKA 453 (455)
T ss_dssp CCSSSSBCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 6667899999999999998888888888777653
No 51
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=55.06 E-value=8.6 Score=30.17 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=30.5
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 40 p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
|...||.|-+.+||.|++.+++-.+++.+++++.
T Consensus 408 ~SgTEP~~rv~~Ea~~~~~~~~l~~~~~~~i~~~ 441 (443)
T 3i3w_A 408 PSGTEPVLRVMVEADDKSLATNEAEYLVEKVKQK 441 (443)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 5567899999999999999999999999998875
No 52
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=50.60 E-value=42 Score=20.73 Aligned_cols=54 Identities=20% Similarity=0.100 Sum_probs=37.4
Q ss_pred HHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHH
Q psy17590 14 EALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEIT 67 (98)
Q Consensus 14 ~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk 67 (98)
++..+|.++++--=.+...++|.......+..+=|-+|+-.+.++-++|+..++
T Consensus 27 ~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 27 EIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp HHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 456667666644334555677765533334567799999999999999998765
No 53
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=49.48 E-value=19 Score=29.33 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=30.1
Q ss_pred CCCCCCceEEEEEe-CCHHHHHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIES-TNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 40 p~~ge~kLYL~Ieg-~te~~V~~A~~eIk~ii~e~~ 74 (98)
|...||+|-+.+|+ .+++.+++-.+++++++++.+
T Consensus 532 pSgTEP~lriy~Ea~~~~e~l~~l~~~~~~~v~~~~ 567 (570)
T 3na5_A 532 PSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVL 567 (570)
T ss_dssp ECSSSSEEEEEEEESSCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999 799999998888888887754
No 54
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=49.20 E-value=27 Score=27.30 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=29.7
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 40 p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
|...||+|-+.+|+.|++.+++-.+++.+++++.
T Consensus 422 pSgTEP~~rvy~Ea~~~~~~~~l~~~~~~~i~~~ 455 (463)
T 1p5d_X 422 ASNTTPVLVLRFEADTEEELERIKTVFRNQLKAV 455 (463)
T ss_dssp ECSSSSEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCceEEEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 6678999999999999999888888888888754
No 55
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=46.75 E-value=19 Score=28.08 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=26.4
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIESTNELAVSKAKVEITRLIK 71 (98)
Q Consensus 40 p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~ 71 (98)
|...||+|-+.+|+.+++.+++-.+++.++++
T Consensus 422 pSgTEP~irvy~Ea~~~~~~~~~~~~~~~~i~ 453 (455)
T 2f7l_A 422 KSGTEPIIRIMAEAKDENVANNLVNELKKIVE 453 (455)
T ss_dssp ECSSSSEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred eCCCCcEEEEEEEECCHHHHHHHHHHHHHHHh
Confidence 56678999999999999888777777777664
No 56
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=44.76 E-value=56 Score=20.55 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=24.2
Q ss_pred CceE-EEEEeCCHHHHHHHHHHHHHHHHHHHHH
Q psy17590 45 RKLF-LAIESTNELAVSKAKVEITRLIKEELIK 76 (98)
Q Consensus 45 ~kLY-L~Ieg~te~~V~~A~~eIk~ii~e~~~~ 76 (98)
+|+| +.+.+++.....+++++.-+.+.+.+.+
T Consensus 51 aP~Y~i~~~~~D~k~ge~~L~~ai~~i~~~i~~ 83 (93)
T 2qn6_B 51 APRYRVDVVGTNPKEASEALNQIISNLIKIGKE 83 (93)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 7889999988888888777777765544
No 57
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=42.18 E-value=35 Score=22.36 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=23.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 46 KLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 46 kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
.|-|+|.|.+..+ .+|++.|++++++.+
T Consensus 9 ~L~LyVaG~tp~S-~~ai~nL~~i~e~~l 36 (105)
T 1wwj_A 9 VLKLYVAGNTPNS-VRALKMLKNILEQEF 36 (105)
T ss_dssp EEEEEESSCCHHH-HHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCchH-HHHHHHHHHHHHHhc
Confidence 5789999999887 468999999999866
No 58
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus}
Probab=38.63 E-value=42 Score=26.57 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=27.2
Q ss_pred CCCCCCceEEEEEe-CCHHHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIES-TNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 40 p~~ge~kLYL~Ieg-~te~~V~~A~~eIk~ii~e 72 (98)
|...||+|-+.+|+ .+++.+++..+++++++.+
T Consensus 488 pSgTEP~irvy~Ea~~~~~~~~~~~~~~~~~~~~ 521 (524)
T 2z0f_A 488 PSGTEDVAKVYAESFLGEAHLERVLEEATALLHK 521 (524)
T ss_dssp ECSSSSEEEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 55678999999999 6888888888888888764
No 59
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=38.24 E-value=61 Score=21.56 Aligned_cols=26 Identities=23% Similarity=0.059 Sum_probs=23.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 48 FLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 48 YL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
++.|.| +..+|+.|++...+.+++.+
T Consensus 76 ~vii~G-dVsaV~aAvea~~~~~~~~l 101 (119)
T 3i96_A 76 ALVIYG-SVGAVEEALSQTVSGLGRLL 101 (119)
T ss_dssp EEEEEE-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEE-CHHHHHHHHHHHHHHHhhcc
Confidence 899999 99999999999999888755
No 60
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=37.88 E-value=5.2 Score=26.04 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=19.5
Q ss_pred HHHHhcc----H-HHHHHhHhhhcceeee
Q psy17590 6 IHLLALL----G-EALAQISEYSEAGITV 29 (98)
Q Consensus 6 ~R~~vT~----~-~tl~~I~e~Tga~It~ 29 (98)
.||.|.+ + -|+.+|.+.+|+|.++
T Consensus 46 ~R~~l~~~L~~ge~TQREIA~~lGiS~st 74 (101)
T 1jhg_A 46 TRVRIIEELLRGEMSQRELKNELGAGIAT 74 (101)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCChhh
Confidence 4787764 4 7999999999999875
No 61
>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A
Probab=37.67 E-value=44 Score=21.96 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=22.6
Q ss_pred eE-EEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 47 LF-LAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 47 LY-L~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
|= |+|.|.+..+.+ |++.|++++++.+
T Consensus 13 L~lLyvag~tp~S~~-ai~nL~~i~e~~l 40 (105)
T 1t4y_A 13 LLLQLFVDTRPLSQH-IVQRVKNILAAVE 40 (105)
T ss_dssp EEEEEEECSCHHHHH-HHHHHHHHHHHHC
T ss_pred hheeeEeCCCccHHH-HHHHHHHHHHHhc
Confidence 55 889999988865 9999999999854
No 62
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=32.67 E-value=8.9 Score=25.37 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=17.3
Q ss_pred hccHHHHHHhHhhhcceeee
Q psy17590 10 ALLGEALAQISEYSEAGITV 29 (98)
Q Consensus 10 vT~~~tl~~I~e~Tga~It~ 29 (98)
+.++-++.+|.+.||||..|
T Consensus 55 L~~G~SyreIa~~tG~StaT 74 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTAT 74 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHH
T ss_pred HHcCCCHHHHHHHHCccHHH
Confidence 55788999999999999866
No 63
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=32.10 E-value=53 Score=18.53 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=29.2
Q ss_pred HHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHH
Q psy17590 16 LAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEI 66 (98)
Q Consensus 16 l~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eI 66 (98)
+.++-+..|.-.. ..+++ ..|.++=|=+|+-.++++.++|+..+
T Consensus 24 l~~~F~~~G~i~~---v~i~~----~~g~~~g~afV~f~~~~~A~~Ai~~l 67 (81)
T 2krb_A 24 IHKIFSKFGKITN---DFYPE----EDGKTKGYIFLEYASPAHAVDAVKNA 67 (81)
T ss_dssp HHHHHHTTCCEEE---EECCC----BTTBCCCEEEEEESSHHHHHHHHTTS
T ss_pred HHHHHhhcCCeEE---EEecC----CCCcEeEEEEEEECCHHHHHHHHHHh
Confidence 4444444554333 44652 34567789999999999999988643
No 64
>2khd_A Uncharacterized protein VC_A0919; alpha beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Vibrio cholerae o1 biovar el tor str}
Probab=32.02 E-value=1.1e+02 Score=20.08 Aligned_cols=47 Identities=15% Similarity=0.043 Sum_probs=40.1
Q ss_pred eeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 26 GITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 26 ~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++..|.|+.-|....+++.-+=+.+.+.++...+.+.+.+.+.-++
T Consensus 11 ~C~aCGc~vDvGtIIDn~D~~a~~~~~~~~~~~Ae~~l~~ltekAk~ 57 (108)
T 2khd_A 11 VCEACGCAGEIGFIIREGDDVAEVSLFGSDKAHLEGKLAEYISLAKQ 57 (108)
T ss_dssp SCSSSCCCCCSCCSCCCSTTEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CcccCCeEEEEeeEEcCCCcEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999998888877777766654
No 65
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=31.44 E-value=95 Score=20.90 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=34.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCceEEeecc
Q psy17590 46 KLFLAIESTNELAVSKAKVEITRLIKEELIKLSSSAHQSINKSRYKGVGRG 96 (98)
Q Consensus 46 kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~~~~~~~~~~~~~GRY~V~~~~ 96 (98)
--++...|.|...|++....|.+.+++.-.... ..-+...|+..++..|
T Consensus 51 DyfVIatg~S~rqv~Aiad~v~~~lk~~g~~~~--~~EG~~~~~WvLlD~G 99 (136)
T 3ups_A 51 DYMVIASGRSSRQVTAMAQKLADRIKAATGYVS--KIEGLPAADWVLLDAG 99 (136)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHHHHHHHCCCC--EEESCSSCSEEEEECS
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHHHHHcCCccC--cccCCCCCCEEEEeCC
Confidence 346667799999999999999988876432211 1124567888887665
No 66
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.21 E-value=70 Score=18.67 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=31.6
Q ss_pred HHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHH
Q psy17590 14 EALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEIT 67 (98)
Q Consensus 14 ~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk 67 (98)
+.+.++-+..|.- ....++..+ .+..+=|-+|+-.+++..++|+..++
T Consensus 32 ~~l~~~F~~~G~i---~~v~i~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~ 79 (100)
T 2do4_A 32 EELEEICKAHGTV---KDLRLVTNR---AGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp HHHHHHHTTTSCE---EEEEEEECT---TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCe---EEEEEEECC---CCCEEeEEEEEECCHHHHHHHHHHhC
Confidence 3344444455543 334444433 45677899999999999999987664
No 67
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=30.30 E-value=34 Score=26.76 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=20.6
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 40 p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
|...||+|-+.+|+.+++.+++-.+++.+++
T Consensus 432 pSgTEP~lrvy~Ea~~~~~~~~l~~~~~~~i 462 (464)
T 1tuo_A 432 ASGTEPVVRIYVEAQSPELVRALLEEARKLV 462 (464)
T ss_dssp CC-----CEEEEEESSHHHHHHHHHHHHTTT
T ss_pred cCCCccEEEEEEEeCCHHHHHHHHHHHHHHh
Confidence 6667899999999999988777777666543
No 68
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=30.06 E-value=1.1e+02 Score=20.15 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=33.0
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCceEEeecc
Q psy17590 47 LFLAIESTNELAVSKAKVEITRLIKEELIKLSSSAHQSINKSRYKGVGRG 96 (98)
Q Consensus 47 LYL~Ieg~te~~V~~A~~eIk~ii~e~~~~~~~~~~~~~~~GRY~V~~~~ 96 (98)
-++...|.|...|++....|.+.+++.=... ...-+...|+..++..|
T Consensus 36 yfVIatg~S~rqv~Aiad~v~~~lk~~g~~~--~~~EG~~~~~WvLlD~G 83 (125)
T 2o5a_A 36 FFLICHGNSEKQVQAIAHELKKVAQEQGIEI--KRLEGYEQARWVLIDLG 83 (125)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHTTCCC--CEEESTTTTSEEEEECS
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcc--ccccCCCCCCEEEEeCC
Confidence 4566679999999999999999887631111 01124567888887765
No 69
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=29.26 E-value=1.1e+02 Score=21.36 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=33.6
Q ss_pred eceeeCCCCCCCC----CCCceEEEEE--------e-CCHHHHHHHHHHHHHHHHH
Q psy17590 30 RGIYIPPGKNPPE----GERKLFLAIE--------S-TNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 30 KG~y~ppg~~p~~----ge~kLYL~Ie--------g-~te~~V~~A~~eIk~ii~e 72 (98)
+..=|.|..-|.- .+|+..++|- | .|++.+..|...|-++|++
T Consensus 30 ~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~~~L~~ 85 (180)
T 1ytb_A 30 RNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQK 85 (180)
T ss_dssp SSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 5567888776543 5778777664 4 8999999999999999876
No 70
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=28.81 E-value=72 Score=18.82 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=22.1
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHH
Q psy17590 42 EGERKLFLAIESTNELAVSKAKVEIT 67 (98)
Q Consensus 42 ~ge~kLYL~Ieg~te~~V~~A~~eIk 67 (98)
.+..+-|=+|+-.+++..++|+..++
T Consensus 66 ~g~~~g~afV~f~~~~~a~~A~~~l~ 91 (107)
T 3ulh_A 66 SGRSLGTADVHFERKADALKAMKQYN 91 (107)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 45678899999999999999988654
No 71
>2k3i_A Uncharacterized protein YIIS; GFT protein structure, PSI, NESG, structural genomics, structure initiative; NMR {Shigella flexneri 2A}
Probab=25.70 E-value=1.5e+02 Score=19.54 Aligned_cols=46 Identities=9% Similarity=-0.002 Sum_probs=39.2
Q ss_pred eeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 27 ITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 27 It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
++..|.++.-|....+++.-+-+.+.+.|+...+.+.+.+.+.-++
T Consensus 10 C~acgc~vDvGtIIDn~D~~a~~~~~~~~~~~Ae~~l~~ltekAk~ 55 (109)
T 2k3i_A 10 CSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAA 55 (109)
T ss_dssp CCCCCCSCCCSCCCCCSCSEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ccCccEEEEeeEEEcCCCcEEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 5667999999999999999999999999999888777776666554
No 72
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=25.58 E-value=1.3e+02 Score=21.81 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=32.6
Q ss_pred eceeeCCCCCCCC----CCCceEEEEE---------eCCHHHHHHHHHHHHHHHHH
Q psy17590 30 RGIYIPPGKNPPE----GERKLFLAIE---------STNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 30 KG~y~ppg~~p~~----ge~kLYL~Ie---------g~te~~V~~A~~eIk~ii~e 72 (98)
+..=|.|..-|.- .+|+..++|- +.|++.+..|..++.++|++
T Consensus 68 ~n~eYePe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~~~L~~ 123 (218)
T 3eik_A 68 RNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHK 123 (218)
T ss_dssp TTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcEEcCccCceEEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 4555777764442 5677776665 57999999999999999886
No 73
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=25.50 E-value=70 Score=25.61 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=22.9
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 40 p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
|...||.+-+.+|+.|++.+++-.+++.+++
T Consensus 513 pSGTEP~lRvy~Ea~~~e~~~~l~~~~~~~v 543 (544)
T 2dka_A 513 ASGTEDAVRVYAEADTQNNVEELSKAVSELV 543 (544)
T ss_dssp EC----CEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEEeCCHHHHHHHHHHHHHHh
Confidence 4456899999999999998888888887765
No 74
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}
Probab=25.32 E-value=1.3e+02 Score=19.85 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=22.3
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 47 LFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 47 LYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
-++.|.| +..+|+.|+.-..+.+.+.+
T Consensus 80 g~v~i~G-dvsaV~aAvea~~~~~~~~~ 106 (124)
T 3cgi_A 80 GAVVLTG-DVSAVEYALKQVTRTLGEMM 106 (124)
T ss_dssp TEEEEEE-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEE-CHHHHHHHHHHHHHHHHhcc
Confidence 4788999 99999999999888776543
No 75
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.30 E-value=82 Score=18.45 Aligned_cols=48 Identities=17% Similarity=0.016 Sum_probs=31.7
Q ss_pred HHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q psy17590 14 EALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITR 68 (98)
Q Consensus 14 ~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ 68 (98)
+.+.++-+..|.... ..++.. .+..+=|-+|+-.+.++.++|+..++.
T Consensus 30 ~~l~~~F~~~G~i~~---v~i~~~----~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (103)
T 2d9p_A 30 ERLRKAFSPFGTITS---AKVMME----GGRSKGFGFVCFSSPEEATKAVTEMNG 77 (103)
T ss_dssp HHHHHTTTTTSCEEE---EEEEEC----SSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCEEE---EEEEcC----CCCcCEEEEEEECCHHHHHHHHHHhCC
Confidence 334444455554333 333332 456778999999999999999987654
No 76
>1m5s_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 1.85A {Methanosarcina barkeri} SCOP: d.58.33.1 d.58.33.1
Probab=24.90 E-value=85 Score=24.13 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=16.5
Q ss_pred CceEEEEEeCCHHHHHHHHH
Q psy17590 45 RKLFLAIESTNELAVSKAKV 64 (98)
Q Consensus 45 ~kLYL~Ieg~te~~V~~A~~ 64 (98)
-=+-+.|.|.|+++|.+|+.
T Consensus 243 ~V~EIVIdGl~~~aV~~Amr 262 (297)
T 1m5s_A 243 AVYEIVINGLDEESIKAAMK 262 (297)
T ss_dssp EEEEEEEEESSHHHHHHHHH
T ss_pred eEEEEEEcCCCHHHHHHHHH
Confidence 44558899999999999975
No 77
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=24.35 E-value=71 Score=24.58 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=29.8
Q ss_pred eceeeCCCCCCCCCCCceEEEEE-eCCHHHHHHHHHHHHHHHHHHHHH
Q psy17590 30 RGIYIPPGKNPPEGERKLFLAIE-STNELAVSKAKVEITRLIKEELIK 76 (98)
Q Consensus 30 KG~y~ppg~~p~~ge~kLYL~Ie-g~te~~V~~A~~eIk~ii~e~~~~ 76 (98)
+|.++-||.........-|+-|. +.+++.++.|++.|.+++++.+.+
T Consensus 450 ~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~~~~~ 497 (500)
T 3tcm_A 450 TGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSE 497 (500)
T ss_dssp HCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566554321222233333 488999999999999999876543
No 78
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=24.13 E-value=1.1e+02 Score=20.42 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=32.7
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCceEEeecc
Q psy17590 47 LFLAIESTNELAVSKAKVEITRLIKEELIKLSSSAHQSINKSRYKGVGRG 96 (98)
Q Consensus 47 LYL~Ieg~te~~V~~A~~eIk~ii~e~~~~~~~~~~~~~~~GRY~V~~~~ 96 (98)
-++...|.|...|++....|.+.+++.=... ...-+...|+..++..|
T Consensus 36 yfVIaTg~S~rqv~Aiad~v~~~lk~~g~~~--~~~EG~~~~~WvLlD~G 83 (130)
T 2id1_A 36 RMIVATGDSNRQVKALANSVQVKLKEAGVDI--VGSEGHESGEWVLVDAG 83 (130)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHTTCCC--CBCCSTTTSSEEEEEET
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcC--ccccCCCCCCEEEEecC
Confidence 4556669999999999999998887531111 11124567888887765
No 79
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=23.77 E-value=78 Score=22.12 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=32.3
Q ss_pred eceeeCCCCCCCC----CCCceEEEEE--------e-CCHHHHHHHHHHHHHHHHH
Q psy17590 30 RGIYIPPGKNPPE----GERKLFLAIE--------S-TNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 30 KG~y~ppg~~p~~----ge~kLYL~Ie--------g-~te~~V~~A~~eIk~ii~e 72 (98)
+..-|.|..-|.- .+|+.-++|. | .|++.++.|++.|-.+|.+
T Consensus 125 ~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks~~~~~~a~~~i~~~L~~ 180 (182)
T 1ais_A 125 PNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDK 180 (182)
T ss_dssp TTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred CCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 5567777765542 5677776665 4 6899999999999998865
No 80
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=23.19 E-value=1.4e+02 Score=18.28 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=33.3
Q ss_pred HHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q psy17590 14 EALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITR 68 (98)
Q Consensus 14 ~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ 68 (98)
+.+.++-+..|. +....++..+ .+..+=|-+|+-.++++.++|+..++.
T Consensus 22 ~~l~~~F~~~G~---i~~v~i~~~~---~g~~~g~afV~F~~~~~A~~Ai~~l~g 70 (116)
T 2fy1_A 22 KMLKAVFGKHGP---ISEVLLIKDR---TSKSRGFAFITFENPADAKNAAKDMNG 70 (116)
T ss_dssp HHHHHHHHTSSC---CSEEEEECST---TTTCCCEEEEECSSHHHHHHHHHHCSS
T ss_pred HHHHHHHHhcCC---EEEEEEEECC---CCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 344455555554 3344455443 566778999999999999999986553
No 81
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=22.65 E-value=38 Score=19.08 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=21.6
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHH
Q psy17590 50 AIESTNELAVSKAKVEITRLIKEELIK 76 (98)
Q Consensus 50 ~Ieg~te~~V~~A~~eIk~ii~e~~~~ 76 (98)
+|-..+.+.++.|-..|+.++.|+-.+
T Consensus 16 Ll~s~~P~Dlq~AN~LiK~mv~edq~r 42 (45)
T 1j2j_B 16 LLKSSHPEDLRAANKLIKEMVQEDQKR 42 (45)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHcCChhhHHHHHHHHHHHhhHHHHH
Confidence 455678889999999999999886533
No 82
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=22.27 E-value=92 Score=24.00 Aligned_cols=23 Identities=4% Similarity=-0.133 Sum_probs=20.1
Q ss_pred eCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 53 STNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 53 g~te~~V~~A~~eIk~ii~e~~~ 75 (98)
+.+++.++.|++.|.+.+++...
T Consensus 473 ~~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 473 LPPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999987554
No 83
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=22.05 E-value=1.1e+02 Score=16.88 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=22.0
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHH
Q psy17590 42 EGERKLFLAIESTNELAVSKAKVEIT 67 (98)
Q Consensus 42 ~ge~kLYL~Ieg~te~~V~~A~~eIk 67 (98)
.+..+=|=+|+-.+.++.++|+..++
T Consensus 39 ~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 39 TGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCccceEEEEECCHHHHHHHHHHhc
Confidence 45678899999999999999997654
No 84
>1wz4_A Major surface antigen; helix turn helix, gene regulation; NMR {Synthetic}
Probab=21.81 E-value=21 Score=17.87 Aligned_cols=10 Identities=60% Similarity=1.321 Sum_probs=7.9
Q ss_pred eeceeeCCCC
Q psy17590 29 VRGIYIPPGK 38 (98)
Q Consensus 29 ~KG~y~ppg~ 38 (98)
+||.|+|.|-
T Consensus 14 vrgly~pAGG 23 (26)
T 1wz4_A 14 VRGLYFPAGG 23 (26)
T ss_dssp CGGGSCCSCC
T ss_pred ccccccCCcc
Confidence 5899998873
No 85
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=21.64 E-value=2e+02 Score=21.86 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=30.9
Q ss_pred CCC-CCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 36 PGK-NPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 36 pg~-~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
..+ +..++.+-++|.+.|.+...+..|.+.+-.++.+
T Consensus 219 ~~sg~Vt~~T~~iliE~ag~d~~~~~~al~~~~~ll~e 256 (348)
T 2cxi_A 219 EFTGRVTTDTKNVFIDVTGWKLEKVMLALNVMVTALAE 256 (348)
T ss_dssp SSSSCCCTTCCSEEEEEEESCHHHHHHHHHHHHHHHHT
T ss_pred CCcCcccCCCCEEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 344 5666779999999999999999999988888875
No 86
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=20.94 E-value=64 Score=22.24 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=20.4
Q ss_pred eEEEEEeCC----HHHHHHHHHHHHHHHHH
Q psy17590 47 LFLAIESTN----ELAVSKAKVEITRLIKE 72 (98)
Q Consensus 47 LYL~Ieg~t----e~~V~~A~~eIk~ii~e 72 (98)
+|..||..+ +..|++|+.+|+.++..
T Consensus 41 vF~~VE~~De~~~~~vv~~av~eI~~~a~k 70 (143)
T 2hl0_A 41 AFISVEKVDEKNPEEVSLKAIEEISKVAEQ 70 (143)
T ss_dssp EEEECBGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCcCCHHHHHHHHHHHHHHHHHh
Confidence 566777555 58999999999998764
No 87
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=20.70 E-value=1.5e+02 Score=20.73 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=32.9
Q ss_pred eceeeCCCCCCCC----CCCceEEEEE--------e-CCHHHHHHHHHHHHHHHHH
Q psy17590 30 RGIYIPPGKNPPE----GERKLFLAIE--------S-TNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 30 KG~y~ppg~~p~~----ge~kLYL~Ie--------g-~te~~V~~A~~eIk~ii~e 72 (98)
+..-|.|..-|.- .+|+.-++|. | .|++.++.|++.|-.+|.+
T Consensus 129 ~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~~~A~~~i~~~L~~ 184 (188)
T 2z8u_A 129 EGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKE 184 (188)
T ss_dssp TTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHHHHHHHHHHHHHHHHH
T ss_pred cCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 5667777776542 5677776665 4 6999999999999999875
No 88
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=20.20 E-value=1.2e+02 Score=18.47 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=30.8
Q ss_pred HHHhHhhhcceeee-eceeeCCCCCC-------CCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 16 LAQISEYSEAGITV-RGIYIPPGKNP-------PEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 16 l~~I~e~Tga~It~-KG~y~ppg~~p-------~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
+.+......+.|++ +|..--+.|.. ....-.+-|.++|++++ .|+..|.+++.+
T Consensus 21 ~v~~a~~f~s~I~i~~~~~~vdaKSim~lmsLg~~~G~~i~i~a~G~De~---~Al~~l~~l~~~ 82 (88)
T 1pch_A 21 LAKEASKFSSNITIIANEKQGNLKSIMNVMAMAIKTGTEITIQADGNDAD---QAIQAIKQTMID 82 (88)
T ss_dssp HHHHHTTCSSEEEEEETTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHH---HHHHHHHHHHHH
T ss_pred HHHHHhhCCCeEEEEECCEEEehHhHHHHHhcCCCCCCEEEEEEeCCCHH---HHHHHHHHHHHh
Confidence 34455567788777 33322222221 11224699999999975 556666666653
Done!