RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17590
(98 letters)
>gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones].
Length = 194
Score = 27.2 bits (61), Expect = 1.0
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 24 EAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIK 71
E G+ +RG +I P+G + L N L + + EI R+I
Sbjct: 119 EEGLALRGTFII----DPDGVIRHIL----VNPLTIGRNVDEILRVID 158
>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB.
In prokaryotes, the incorporation of selenocysteine as
the 21st amino acid, encoded by TGA, requires several
elements: SelC is the tRNA itself, SelD acts as a donor
of reduced selenium, SelA modifies a serine residue on
SelC into selenocysteine, and SelB is a
selenocysteine-specific translation elongation factor.
3-prime or 5-prime non-coding elements of mRNA have been
found as probable structures for directing
selenocysteine incorporation. This model describes the
elongation factor SelB, a close homolog rf EF-Tu. It may
function by replacing EF-Tu. A C-terminal domain not
found in EF-Tu is in all SelB sequences in the seed
alignment except that from Methanococcus jannaschii.
This model does not find an equivalent protein for
eukaryotes [Protein synthesis, Translation factors].
Length = 581
Score = 27.1 bits (60), Expect = 1.3
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 37 GKNPPEGERKL-----FLAIESTNELAVSKAKVEITRLIKEELIKL 77
G+N GE ++ L E + V K ++E + EEL+K
Sbjct: 401 GENIDFGEVEVKKILVKLGTEQHDVKGVDKERLERMASLNEELLKT 446
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1.
Length = 738
Score = 26.8 bits (59), Expect = 2.3
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 8 LLALLGEALAQISEYSEAGI-------TVRGIYIPPGKNPPE 42
L+AL+ AQ E ++ +RGIY P G N P+
Sbjct: 482 LVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPD 523
>gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase;
Provisional.
Length = 368
Score = 26.0 bits (58), Expect = 3.5
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 4 SPIHLLALLGEALAQISEYSEAGITVRG 31
P H++A +AL ++ E E G+ RG
Sbjct: 242 PPTHVVAAFYQALLELEE--EGGVPARG 267
>gnl|CDD|182838 PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.
Length = 672
Score = 26.0 bits (57), Expect = 3.9
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 22 YSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVE---ITRLIKEELIKLS 78
Y +G ++ I NP E++LF + +EL V A E R+ E LI
Sbjct: 277 YRSSGRILKAANILIANNPHVFEKRLFSELGYGDELKVLSANNEEHEAERVTGE-LI--- 332
Query: 79 SSAHQSINKSRYK 91
AH +NK++YK
Sbjct: 333 --AHHFVNKTQYK 343
>gnl|CDD|153077 cd07930, bacterial_phosphagen_kinase, Phosphagen (guanidino)
kinases found in bacteria. Phosphagen (guanidino)
kinases are enzymes that transphosphorylate a high
energy phosphoguanidino compound, such as
phosphocreatine (PCr) or phosphoarginine, which is used
as an energy-storage and -transport metabolite, to ADP,
thereby creating ATP. This subfamily is specific to
bacteria and lacks an N-terminal domain, which otherwise
forms part of the substrate binding site. Most of the
catalytic residues are found in the larger C-terminal
domain, however, which appears conserved in these
bacterial proteins. Their functions have not been
characterized.
Length = 232
Score = 25.5 bits (57), Expect = 4.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 6 IHLLALLGEALAQISEYSEA----GITVRGIY 33
+HL AL+ QI+ A G+ VRG+Y
Sbjct: 159 LHLPALVL--TGQINRILNALSQLGLAVRGLY 188
>gnl|CDD|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal
structure and biogenesis].
Length = 150
Score = 25.3 bits (56), Expect = 5.0
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 43 GERKLFLAIESTNELAVSKAKVEITRLIKEELIKL----------SSSAHQSINKSRYKG 92
GE ++++ E+A + + +I LIK+ +IK + H K R +G
Sbjct: 18 GENRVWIDPNEIEEIASAITREDIRALIKDGVIKAKPKKGISRGRARKRHAQKKKGRRRG 77
Query: 93 VGRGK 97
G K
Sbjct: 78 PGSRK 82
>gnl|CDD|220331 pfam09660, DUF2397, Protein of unknown function (DUF2397).
Proteins in this entry are encoded within a conserved
gene four-gene neighborhood found sporadically in a
phylogenetically broad range of bacteria including:
Nocardia farcinica, Symbiobacterium thermophilum, and
Streptomyces avermitilis (Actinobacteria), Geobacillus
kaustophilus (Firmicutes), Azoarcus sp. EbN1 and
Ralstonia solanacearum (Betaproteobacteria).
Length = 478
Score = 25.0 bits (55), Expect = 8.1
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 8 LLALLGEALAQISEY--SEAGITVR 30
LL LLG+ALA++ ++ G +R
Sbjct: 428 LLELLGKALARVGPTGKTDGGRRIR 452
>gnl|CDD|216247 pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase.
Length = 495
Score = 24.9 bits (55), Expect = 9.5
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGER 45
L ALA A + I++P GK P G+
Sbjct: 123 LAAALALAEPRLRADPGLAKIFLPTGKPPKAGDL 156
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.132 0.350
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,895,833
Number of extensions: 410305
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 25
Length of query: 98
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 34
Effective length of database: 8,098,946
Effective search space: 275364164
Effective search space used: 275364164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)