RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17590
(98 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.009
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 30/110 (27%)
Query: 2 LKSPIHLLALLGEALAQISEYSEAGITVRGIY-IPPGKNPPEGERKLFLAI-----ESTN 55
++S + ++ G + E G + G+ I PG+ ++ + + T
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 56 EL--------------------AVSKAKVEITRLIKE---ELIKLSSSAH 82
L A+ + IK ++I+L S
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTV-TNVLNFIKLQKIDIIELQKSLS 1887
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 31.2 bits (70), Expect = 0.033
Identities = 13/55 (23%), Positives = 33/55 (60%)
Query: 43 GERKLFLAIESTNELAVSKAKVEITRLIKEELIKLSSSAHQSINKSRYKGVGRGK 97
G+++L+L ++E++++ ++ I +LIK+ L+ S+ S +++R + K
Sbjct: 18 GQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRK 72
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_T
Length = 209
Score = 29.3 bits (65), Expect = 0.14
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 43 GERKLFLAIESTNELAVSKAKVEITRLIKEELIKLSSSAHQSINKSRYKGVGRGK 97
G+ K++L NE++++ ++ I +L+K+ I S +++R + K
Sbjct: 18 GKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQK 72
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB:
1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P*
1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P*
1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Length = 149
Score = 29.1 bits (65), Expect = 0.15
Identities = 9/55 (16%), Positives = 24/55 (43%)
Query: 43 GERKLFLAIESTNELAVSKAKVEITRLIKEELIKLSSSAHQSINKSRYKGVGRGK 97
G+ +++ E ++A + + ++ L+ E I+ S ++R + R
Sbjct: 18 GKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAY 72
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.1.16.3
Length = 321
Score = 28.5 bits (64), Expect = 0.32
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 6 IHLLALLG---EALAQISEYSEAGITVRGIYIPPGKNPPEGERKL 47
+ +++G E + +I E G+T P G + + + L
Sbjct: 270 MEAFSVVGTPDEFIPKIEALGEMGVTQYVAGSPIGPDKEKSIKLL 314
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 28.1 bits (62), Expect = 0.36
Identities = 13/55 (23%), Positives = 33/55 (60%)
Query: 43 GERKLFLAIESTNELAVSKAKVEITRLIKEELIKLSSSAHQSINKSRYKGVGRGK 97
G+++L+L ++E++++ ++ I +LIK+ L+ S+ S +++R + K
Sbjct: 18 GQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRK 72
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 28.1 bits (62), Expect = 0.37
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 43 GERKLFLAIESTNELAVSKAKVEITRLIKEELIKLSSSAHQSINKSRYKGVGRGK 97
G++K++L TNE+A + ++ +I +LIK+ LI S + R + R K
Sbjct: 18 GKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRK 72
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 176
Score = 27.6 bits (61), Expect = 0.52
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 43 GERKLFLAIESTNELAVSKAKVEITRLIKEELIKLSSSAHQSINKSRYKGVGRGK 97
G+RK++L T+E+A + ++ I +L+K I + S +++R + +
Sbjct: 17 GKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKRE 71
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 27.5 bits (60), Expect = 0.58
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 47 LFLAIESTNELAVSKAKVEITRLIKEELIKLSSSAH----QSINKSRYKGVG 94
+F ++E E + + ++ R EE LS + ++ GV
Sbjct: 30 VFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVS 81
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 27.3 bits (60), Expect = 0.74
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 43 GERKLFLAIESTNELAVSKAKVEITRLIKEELIKLSSSAHQSINKSRYKGVGRGK 97
G+RK++L T+E+A + ++ I +L+K I + S +++R + +
Sbjct: 18 GKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKRE 72
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 27.0 bits (60), Expect = 1.1
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 6 IHLLALLG---EALAQISEYSEAGITVRGIYIPPGKNPPE 42
I ++ G + +I E +AG+T + P G + +
Sbjct: 295 IEAFSIAGDPDTVVDKIEELLKAGVTQVVVGSPIGPDKEK 334
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 1.6
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 19/83 (22%)
Query: 19 ISEYSEAGIT---VRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRL------ 69
+ + ++ ++ + I + + G +LF + S E V K E+ R+
Sbjct: 38 VQDMPKSILSKEEIDHIIMSK--DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 70 --IKEELIKLSSSAHQSINKSRY 90
IK E + S+ Y
Sbjct: 96 SPIKTEQRQ------PSMMTRMY 112
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 25.7 bits (56), Expect = 2.0
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 13 GEALAQISEYSEAGITVRG--IYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLI 70
L I + A + +RG + E +++ I ++ AK L+
Sbjct: 38 CSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLL 97
Query: 71 K 71
+
Sbjct: 98 Q 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 2.5
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 7/22 (31%)
Query: 42 EGERKLF-------LAIESTNE 56
+ KL+ LAI++T E
Sbjct: 26 QASLKLYADDSAPALAIKATME 47
Score = 24.5 bits (52), Expect = 5.7
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 9/27 (33%)
Query: 71 KEELIKLSSS----AHQS-----INKS 88
K+ L KL +S A S I +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT 45
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain,
alpha-beta fold RNA-binding motif, immune system; 2.00A
{Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Length = 76
Score = 24.2 bits (53), Expect = 4.1
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 13 GEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72
G+ L + E + A I I P R++ I + A A+ I++ +
Sbjct: 22 GKTLVEYQELTGARIQ---ISKKGEFLPGTRNRRVT--ITGSPA-ATQAAQYLISQRVTY 75
Query: 73 E 73
E
Sbjct: 76 E 76
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)-
methylenetetrahydromethanopterin reductase; (alpha,
beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A
{Methanosarcina barkeri}
Length = 327
Score = 25.0 bits (55), Expect = 4.6
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 6 IHLLALLG---EALAQISEYSEAGITVRGIYIPPGKNPPE 42
I ++ G + + +I + G+T P G +
Sbjct: 276 IEAFSICGTPDDCMKRIKDLEAIGVTQIVAGSPIGPAKEK 315
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.132 0.350
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,427,058
Number of extensions: 77113
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 27
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.8 bits)