RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17590
         (98 letters)



>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 321

 Score = 25.2 bits (55), Expect = 1.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 50 AIESTNELAVSKAKVEITRLIKEELIKL 77
          AI++  E+   +  +   R +K E +KL
Sbjct: 25 AIQANGEMVTKQPLIRSMRTVKRETLKL 52


>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 79

 Score = 24.0 bits (52), Expect = 1.8
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 13 GEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72
          GE +++I + S   I +         +    ER     +  T E +V  AK  + +++++
Sbjct: 27 GEQISRIQQESGCKIQI------APDSGGLPERSCM--LTGTPE-SVQSAKRLLDQIVEK 77


>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 143

 Score = 23.9 bits (52), Expect = 3.4
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 43 GERKLFLAIESTNELAVSKAKVEITRLIKEELIKL------SSSAHQSINKSRYKGVGRG 96
          G+ +++   E   ++A +  + ++  L+ E  I+       S    +   K R  G  +G
Sbjct: 17 GKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKG 76

Query: 97 K 97
           
Sbjct: 77 A 77


>d1el6a_ d.182.1.1 (A:) Baseplate structural protein gp11
           {Bacteriophage T4 [TaxId: 10665]}
          Length = 208

 Score = 24.1 bits (52), Expect = 3.9
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 19  ISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKV 64
           +S YS  GIT+    I   K P  G   L  A   T +   +    
Sbjct: 157 LSTYSTYGITISQEIISESK-PGYGTWNLLGAQTVTLDNQQTPTVF 201


>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein,
          Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 104

 Score = 23.4 bits (50), Expect = 4.6
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 13 GEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72
          GE +  I + S A IT         +      R +   I  T +  V+ AK  I   + E
Sbjct: 34 GETIRSICKASGAKITC----DKESEGTLLLSRLIK--ISGTQK-EVAAAKHLILEKVSE 86

Query: 73 E 73
          +
Sbjct: 87 D 87


>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 81

 Score = 22.2 bits (47), Expect = 9.2
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 10 ALLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRL 69
           ++G+    I +  E    V+ + I  G      ++ L +   + +   V +AK  +  L
Sbjct: 21 LVIGKGGETIKQLQER-AGVKMVMIQDGPQNTGADKPLRI---TGDPYKVQQAKEMVLEL 76

Query: 70 IKEE 73
          I+++
Sbjct: 77 IRDQ 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.132    0.350 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 331,368
Number of extensions: 13569
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 12
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.0 bits)