BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17592
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5SUC9|SCO1_MOUSE Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=2
SV=1
Length = 284
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/166 (57%), Positives = 123/166 (74%)
Query: 18 PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
P++WKS+A+T GG +L M KK K LEK+R R++GK +GG F L N +P
Sbjct: 75 PVSWKSLALTFAIGGSLLAGMKYFKKEKIEKLEKQRHRSIGKPLLGGPFSLTTHNGEPKT 134
Query: 78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
+D+LG+W LIYFGFTHCPDICP+ELEKM VV +ID P++PN+TP+FI++DPERDT E
Sbjct: 135 DKDYLGQWVLIYFGFTHCPDICPEELEKMIEVVEEIDSIPSLPNLTPLFITIDPERDTKE 194
Query: 138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
+ YVKEFSPK +GLTGT E++ +AYRVY+S GPKD+D DYI
Sbjct: 195 AIATYVKEFSPKLVGLTGTKEEIDGVARAYRVYYSPGPKDEDEDYI 240
>sp|A1A4J8|SCO1_BOVIN Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1
Length = 305
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 96/166 (57%), Positives = 122/166 (73%)
Query: 18 PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
P++WKS+AVT GG +L M KK K LEKER R++GK +GG F L +P
Sbjct: 96 PVSWKSLAVTFAIGGALLAGMKYFKKEKTEKLEKERHRSIGKPLLGGPFSLTTHTGEPKT 155
Query: 78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
+D+LG+W LIYFGFTHCPDICP+ELEKM VV++ID P +PN+TP+FI++DPERDT E
Sbjct: 156 DKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVDEIDSIPTLPNLTPLFITIDPERDTKE 215
Query: 138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
+ YVKEFSPK IGLTGT E++ +A+RVY+S GPKD+D DYI
Sbjct: 216 AIANYVKEFSPKLIGLTGTKEEIDQVARAFRVYYSPGPKDEDEDYI 261
>sp|O75880|SCO1_HUMAN Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1
SV=1
Length = 301
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 123/166 (74%)
Query: 18 PITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVK 77
P++WKS+A+T GG +L M ++KK K LEKER+R++GK +GG F L +
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137
+D+LG+W LIYFGFTHCPD+CP+ELEKM VV++ID +P++TP+FIS+DPERDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
+ YVKEFSPK +GLTGT E+V +AYRVY+S GPKD+D DYI
Sbjct: 212 AIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYI 257
>sp|Q5RH02|SCO2_DANRE Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3
SV=1
Length = 279
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 112/161 (69%), Gaps = 1/161 (0%)
Query: 24 VAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIG-GKFELVDCNNKPVKSEDFL 82
+ VT + GGGI+ W + + K+ ++ +R L KVA+G G F L+D + DFL
Sbjct: 73 LVVTLLFGGGIIGTWWYVHQEKEKRIQMQRLEQLRKVALGQGDFHLLDHTGQRRTKRDFL 132
Query: 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142
G W L+YFGFTHCPDICPDELEK+ +VV+ +D P++P++ P+FI+VDPERD + +Y
Sbjct: 133 GHWVLLYFGFTHCPDICPDELEKLTSVVHILDKDPSLPSVQPLFITVDPERDDVSAMARY 192
Query: 143 VKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
VK+F P+ +GLTG+ E+V A + +RVY S GPKD+D DYI
Sbjct: 193 VKDFHPRLVGLTGSAEEVKQAGRDFRVYASNGPKDEDGDYI 233
>sp|Q8VCL2|SCO2_MOUSE Protein SCO2 homolog, mitochondrial OS=Mus musculus GN=Sco2 PE=2
SV=1
Length = 255
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 112/161 (69%), Gaps = 1/161 (0%)
Query: 24 VAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIG-GKFELVDCNNKPVKSEDFL 82
+ +TA+ G G+ + + K+ +++R L + A+G G F L+D +P DF
Sbjct: 50 LLITALFGAGLGWAWLAARAEKEQWRQQQRTEALRQAAVGQGDFSLLDHKGQPRCKADFR 109
Query: 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142
G+W L+YFGFTHCPDICPDELEK+ VV K++ +P++P + P+FI+VDPERD + +Y
Sbjct: 110 GQWVLMYFGFTHCPDICPDELEKLVQVVRKLEAEPDLPLVQPVFITVDPERDDVAAMARY 169
Query: 143 VKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
V+EF P+ +GLTG+ EQVA A + YRVY+SAGPKD+D DYI
Sbjct: 170 VQEFHPRLLGLTGSTEQVAHASRNYRVYYSAGPKDEDQDYI 210
>sp|A6H784|SCO2_BOVIN Protein SCO2 homolog, mitochondrial OS=Bos taurus GN=SCO2 PE=2 SV=1
Length = 266
Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 120/186 (64%), Gaps = 4/186 (2%)
Query: 2 RLYSSELPV---RNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLG 58
+L+S+ P R + P + VTA+ G G+ L+ K+ +++R L
Sbjct: 36 QLFSTPGPADTGRQGQPQGPGLRTRLLVTALVGAGLGGAWLALRAEKERGRQQQRTEALR 95
Query: 59 KVAIG-GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
+ A+G G F L+D + DF G+W L+YFGFTHCPDICPDELEK+ VV +++ +P
Sbjct: 96 QAAVGQGDFSLLDHRGRVRCKADFRGQWVLLYFGFTHCPDICPDELEKLVQVVRQLEAEP 155
Query: 118 NVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177
+P + P+FI+VDPERDT + +YV++F P+ +GLTG+ EQ+A ++YRVY+SAGPKD
Sbjct: 156 GLPPVQPLFITVDPERDTVAAMARYVQDFHPRLLGLTGSAEQIAQVSRSYRVYYSAGPKD 215
Query: 178 KDSDYI 183
+D DYI
Sbjct: 216 EDQDYI 221
>sp|O43819|SCO2_HUMAN Protein SCO2 homolog, mitochondrial OS=Homo sapiens GN=SCO2 PE=1
SV=3
Length = 266
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 106/147 (72%), Gaps = 2/147 (1%)
Query: 39 WNLKKAKQNALEKERRRN-LGKVAIG-GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCP 96
W +A++ L++++R L + A+G G F L+D + DF G+W L+YFGFTHCP
Sbjct: 75 WLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCP 134
Query: 97 DICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGT 156
DICPDELEK+ VV +++ +P +P + P+FI+VDPERD E + +YV++F P+ +GLTG+
Sbjct: 135 DICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGS 194
Query: 157 VEQVAAACKAYRVYFSAGPKDKDSDYI 183
+QVA A +YRVY++AGPKD+D DYI
Sbjct: 195 TKQVAQASHSYRVYYNAGPKDEDQDYI 221
>sp|Q8VYP0|SCO11_ARATH Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana
GN=HCC1 PE=2 SV=1
Length = 334
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 114/171 (66%), Gaps = 7/171 (4%)
Query: 18 PITWKSVAVTAVTGGGILFYMWNLKKAK-----QNALEKERRRNLGKVAIGGKFELVDCN 72
P++W S + TG G+++Y KK +N++ + + GK AIGG F L+ +
Sbjct: 124 PVSWMSFFLLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSLIRDD 183
Query: 73 NKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE 132
K V ++ +GKW ++YFGFTHCPDICPDEL K+AA ++KI V ++ P+FISVDPE
Sbjct: 184 GKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKENSGV-DVVPVFISVDPE 242
Query: 133 RDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
RDT + V +YVKEF PK IGLTG+ E++ + ++YRVY+ +++DSDY+
Sbjct: 243 RDTVQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVYY-MKTEEEDSDYL 292
>sp|P38072|SCO2_YEAST Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1
Length = 301
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 112/177 (63%), Gaps = 5/177 (2%)
Query: 9 PVRNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFEL 68
P+R + +F WK+ + GG Y+ ++ + E + R G VA+GG F L
Sbjct: 69 PIRTRFFQFS-RWKATIALLLLSGGTYAYLSRKRRLLETEKEADANRAYGSVALGGPFNL 127
Query: 69 VDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFIS 128
D N KP E+ GK++++YFGF+HCPDICP+EL+++ ++++D + ++ I P+FIS
Sbjct: 128 TDFNGKPFTEENLKGKFSILYFGFSHCPDICPEELDRLTYWISELDDKDHI-KIQPLFIS 186
Query: 129 VDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD--KDSDYI 183
DP RDTP+++ +Y+ +F P IGLTGT +QV + CK Y+VYFS P+D + DY+
Sbjct: 187 CDPARDTPDVLKEYLSDFHPAIIGLTGTYDQVKSVCKKYKVYFST-PRDVKPNQDYL 242
>sp|P23833|SCO1_YEAST Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1
Length = 295
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 106/175 (60%), Gaps = 3/175 (1%)
Query: 10 VRNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELV 69
VR + +F T K++A+ GG + ++ K+ + E E R GK ++GG F L
Sbjct: 64 VREGSIEFS-TGKAIALFLAVGGALSYFFNREKRRLETQKEAEANRGYGKPSLGGPFHLE 122
Query: 70 DCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV 129
D ++ LGK+++IYFGF++CPDICPDEL+K+ +N + + + + P+FI+
Sbjct: 123 DMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGI-TLQPLFITC 181
Query: 130 DPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDK-DSDYI 183
DP RD+P ++ +Y+ +F P +GLTGT ++V ACK YRVYFS P K DY+
Sbjct: 182 DPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYL 236
>sp|O42899|SCO1_SCHPO Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sco1 PE=3 SV=1
Length = 263
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 109/174 (62%), Gaps = 17/174 (9%)
Query: 19 ITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRR---NLGKVAIGGKFELVDCNNKP 75
I+ +++ + A T G+ Y + KK LE++ + +G+ +GG F L+D +
Sbjct: 54 ISIRALLLAAATSVGLYAYFQHEKK---KVLERQNDKVLATIGRPQLGGAFSLIDHHGNR 110
Query: 76 VKSEDFLGKWALIYFGFTHCPDICPDELEKMAA---VVNKIDGQPNVPNITPIFISVDPE 132
V DF GK++LIYFGFT CPDICPDEL+KM+A +VN + G + PIFI+ DP
Sbjct: 111 VTDNDFKGKFSLIYFGFTRCPDICPDELDKMSAAIDIVNNVVGDV----VYPIFITCDPA 166
Query: 133 RDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKD---SDYI 183
RD P+ + +Y+++F+PK +GLTG+ E++ CK +RVYFS PK+ D DY+
Sbjct: 167 RDPPQEMAEYLEDFNPKIVGLTGSYEEIKDICKKFRVYFST-PKNIDPKKDDYL 219
>sp|Q1RIN4|SCO22_RICBR SCO2-like protein RBE_0699 OS=Rickettsia bellii (strain RML369-C)
GN=RBE_0699 PE=3 SV=1
Length = 204
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 5/162 (3%)
Query: 24 VAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLG 83
+ + + G G L+ + +LK + L + IGG FEL+D N + S++ G
Sbjct: 10 IGASLLIGVGALYLLLSLKTPDK-PLAGQVNIYEDNAEIGGDFELIDQNGELFNSDELKG 68
Query: 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV 143
K +LIYFGFT CPDICP L K+ V + N +I P+FI++DP RDTP ++ +Y+
Sbjct: 69 KLSLIYFGFTSCPDICPTSLNKITKAVEIL--SENKIDIVPVFITIDPSRDTPAVLKEYL 126
Query: 144 KEFSPKFIGLTGTVEQVAAACKAYRVYF--SAGPKDKDSDYI 183
K F PKFIGLTG +Q+ ++VY+ +A D D DY+
Sbjct: 127 KHFHPKFIGLTGDEKQIREVADKFKVYYAKAASENDNDQDYM 168
>sp|Q9ZCW7|SCO22_RICPR SCO2-like protein RP587 OS=Rickettsia prowazekii (strain Madrid E)
GN=RP587 PE=3 SV=1
Length = 205
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 19 ITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKS 78
IT + ++ + G G L+ + +L K+ L + K+ IGG FEL+D N + S
Sbjct: 7 ITKIIIIMSLLIGVGALYVLLSLSTPKK-PLAGQFNIYEDKIKIGGPFELIDQNGEIFNS 65
Query: 79 EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL 138
+ G +LIYFGFT CPDICP L K+ +V + N +I P+FI+VDP+RDTPE+
Sbjct: 66 DKLRGHLSLIYFGFTSCPDICPTSLNKITNIVEIL--HQNKIDIIPVFITVDPKRDTPEV 123
Query: 139 VGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKD 179
+ +Y+K F PKFI LTG Q+ ++V+++ D D
Sbjct: 124 LKEYIKNFHPKFISLTGNEHQIKDVTDKFKVFYARVNSDND 164
>sp|Q4UKW2|SCO22_RICFE SCO2-like protein RF_0960 OS=Rickettsia felis (strain ATCC VR-1525
/ URRWXCal2) GN=RF_0960 PE=3 SV=1
Length = 205
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 96/161 (59%), Gaps = 4/161 (2%)
Query: 24 VAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLG 83
+ ++ + G G L+ + +L+ ++ L + V IGG FEL+D N + S++ G
Sbjct: 12 IVISLLIGVGALYLLLSLRTPEK-PLAGQVNIYEDNVKIGGDFELIDQNGEIFNSDELKG 70
Query: 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV 143
+LIYFGFT CPDICP L KM +V ++ +I P+FI++DP+RDTP ++ +Y+
Sbjct: 71 NLSLIYFGFTSCPDICPTSLNKMTEIVEILNKHK--IDILPVFITIDPKRDTPIVLKEYL 128
Query: 144 KEFSPKFIGLTGTVEQVAAACKAYRVYFS-AGPKDKDSDYI 183
K F PKFIGLTG +Q+ ++V+++ D D +Y+
Sbjct: 129 KHFHPKFIGLTGNEQQIKGVTDKFKVFYARVNGDDDDPNYM 169
>sp|Q92H76|SCO22_RICCN SCO2-like protein RC0895 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=RC0895 PE=3 SV=1
Length = 205
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 3/156 (1%)
Query: 24 VAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLG 83
+ ++ + G G L+ + +L+ ++ L + V IGG FEL+D N + S+ G
Sbjct: 12 IVISLLIGVGALYLLLSLRTPEK-PLAGQVNIYEDNVKIGGDFELIDQNGEIFNSDKLKG 70
Query: 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV 143
+LIYFGFT CPDICP L KM +V ++ +I P+FI++DP+RDTP + +Y+
Sbjct: 71 NLSLIYFGFTSCPDICPTSLNKMTEIVEILNKHK--IDILPVFITIDPKRDTPIALKEYL 128
Query: 144 KEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKD 179
K F PKFIGLTG +Q+ ++V+++ D D
Sbjct: 129 KHFHPKFIGLTGNEQQIKDVTDKFKVFYARVHGDDD 164
>sp|Q8LAL0|SCO12_ARATH Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana
GN=HCC2 PE=2 SV=1
Length = 276
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Query: 62 IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPN 121
IGG F LV NK V DF GKW L+YFG++ PD+ P++L+ M+ V+K++ + N
Sbjct: 115 IGGPFTLVSTENKIVTENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKLESKHN-EK 173
Query: 122 ITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSD 181
I P+F+++DP+RDTP + Y+KEF + +GLTGT + + YRVYF +D + D
Sbjct: 174 ILPVFVTLDPQRDTPSHLHAYLKEFDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGE-D 232
Query: 182 YI 183
Y+
Sbjct: 233 YL 234
>sp|Q52720|SENC_RHOCB Protein SenC OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC
16581 / SB1003) GN=senC PE=3 SV=2
Length = 221
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 4/120 (3%)
Query: 54 RRNLGKVA--IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVN 111
R+ G + IGG F L+ V D + K +L+YFG+++CPD+CP + + AA V+
Sbjct: 40 RKGTGSASAQIGGPFTLISETGATVTDRDVITKPSLVYFGYSYCPDVCPIDSTRNAAAVD 99
Query: 112 KIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF 171
+ + + ++TP+FISVD RDTP ++ ++ SPK IGLTGT EQ+ AA KAYR Y+
Sbjct: 100 LLAERGH--DVTPVFISVDAARDTPPVLTEFTDLMSPKMIGLTGTPEQIDAAVKAYRAYY 157
>sp|P47206|SCOP_PSEST Putative copper-binding protein OS=Pseudomonas stutzeri GN=scoP
PE=3 SV=2
Length = 204
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 65 KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITP 124
+ ELVD N++P +E G+W +++FGFT CPDICP L +M + ++ + +
Sbjct: 47 QLELVDQNDQPFSTETLKGRWHILFFGFTACPDICPTTLSEMRRLFGQLPAETR-EQLQL 105
Query: 125 IFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDY 182
+ I+ DP RDTP+ + Y+ + FIGLTG +EQ+ KA + F + + DY
Sbjct: 106 VLITADPARDTPQQLKTYLSYYRAGFIGLTGNMEQLQRLSKALGLPFVPA-TETEGDY 162
>sp|Q68WF1|SCO22_RICTY SCO2-like protein RT0576 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=RT0576 PE=3 SV=2
Length = 203
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNV 119
+ IG FEL+D N + S G +LIYFGFT CPDICP L KM +V + N
Sbjct: 45 IKIGEAFELIDQNGEIFNSNKLRGHLSLIYFGFTSCPDICPTFLNKMTNIVEIL--HQNQ 102
Query: 120 PNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRV-YFSAGPKDK 178
+I PIFI++DP+RDTPE++ +Y+K F PKFI LTG Q+ +++ Y D
Sbjct: 103 IDIIPIFITIDPKRDTPEVLKEYIKNFHPKFICLTGNEHQIKDVTDKFKILYARVNGYDD 162
Query: 179 DSDYI 183
D +Y+
Sbjct: 163 DQNYM 167
>sp|Q9ZEB4|SCO21_RICPR SCO2-like protein RP031 OS=Rickettsia prowazekii (strain Madrid E)
GN=RP031 PE=3 SV=1
Length = 191
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 87/170 (51%), Gaps = 12/170 (7%)
Query: 10 VRNKTDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKV--AIGGKFE 67
+RN ++ I +A+ +TG L+ ++ +L + + + ++ KF
Sbjct: 1 MRNNKNQMYIIKIFIAIAMITGIIFLYLFYS-------SLTTSKLKETSNMDDSLKIKFT 53
Query: 68 LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFI 127
L++ K S + G +LIYFG T+ + ++ K + KI + N+ + +FI
Sbjct: 54 LIEQQGKKFDSTNLQGYLSLIYFGTTYS--LYDNQALKRVEDIIKILKRENIL-LQVVFI 110
Query: 128 SVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177
++DPE DT E++ KY+++ FIGLTG V+ + + ++V++++ D
Sbjct: 111 TLDPEHDTSEVLKKYLEKIDSNFIGLTGRVQDIEQLAQQFKVFYTSKIFD 160
>sp|Q1RKK4|SCO21_RICBR SCO2-like protein RBE_0029 OS=Rickettsia bellii (strain RML369-C)
GN=RBE_0029 PE=3 SV=1
Length = 199
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 7/158 (4%)
Query: 24 VAVTAVTGGGILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLG 83
+A+ +TG L+ ++ + Q + + AI KF L D K +D G
Sbjct: 15 IALAVITGIIYLYLFYSSFEPSQIYINTKVSDKNNSQAI--KFALKDQKGKVFNDKDLKG 72
Query: 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV 143
+LIYFG T+ D + L+K+ ++ KI + N+ + +FI++DP DT E++ KY+
Sbjct: 73 HLSLIYFGVTYSLD-DENALKKIEDII-KILQKENIV-VQTVFITLDPINDTSEVLKKYL 129
Query: 144 KEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSD 181
+ FIGLTGT++ + ++V++ PK D++
Sbjct: 130 ENIDNNFIGLTGTIDDITQVANEFKVFYE--PKTFDTE 165
>sp|Q92JM5|SCO21_RICCN SCO2-like protein RC0042 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=RC0042 PE=3 SV=1
Length = 199
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 65 KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITP 124
KF L+D K S G +LIYFG T+ + ++ K + KI + N+ +
Sbjct: 54 KFTLIDQEGKKFDSTHLQGHLSLIYFGTTYS--LYDNQTLKRVEDIIKILKKENIL-VQV 110
Query: 125 IFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF 171
+FI++D E DT E++ KY+++ FIGLTG VE + ++V+F
Sbjct: 111 VFITLDSEHDTSEVLKKYLEKIDDNFIGLTGRVEDIEQLADQFKVFF 157
>sp|Q4UNH4|SCO21_RICFE SCO2-like protein RF_0043 OS=Rickettsia felis (strain ATCC VR-1525
/ URRWXCal2) GN=RF_0043 PE=3 SV=1
Length = 198
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 65 KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITP 124
KF L+D K S G +LIYFG T+ + ++ K + KI + N+ +
Sbjct: 54 KFTLIDQEGKKFDSTHLQGHLSLIYFGTTYS--LYDNQALKRVEDIIKILKKENIV-VQV 110
Query: 125 IFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA 173
+FI++DP+ DT E++ KY+++ FIGLTG V+ + ++V++++
Sbjct: 111 VFITLDPQHDTSEVLKKYLEKIDDNFIGLTGRVQDIEQLADQFKVFYTS 159
>sp|P54178|SCO1_BACSU SCO1 protein homolog OS=Bacillus subtilis (strain 168) GN=ypmQ PE=1
SV=2
Length = 193
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
F + + K V E G+ L F FT+C ICP M + K+ + N+ ++ I
Sbjct: 35 FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-NI-DVRII 92
Query: 126 FISVDPERDTPELVGKYVKEFSPKF 150
SVDPE D P+ + K+ + F
Sbjct: 93 SFSVDPENDKPKQLKKFAANYPLSF 117
>sp|Q9L699|MIAB_PASMU (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Pasteurella multocida (strain Pm70) GN=miaB PE=3 SV=1
Length = 474
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G TH IC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAIDGID-RLRFTTSHP 241
Query: 125 IFIS---VDPERDTPELV 139
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELV 259
>sp|Q65RW3|MIAB_MANSM (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=miaB PE=3 SV=1
Length = 474
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G TH IC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVAAIDGID-RLRFTTSNP 241
Query: 125 IFIS---VDPERDTPELV 139
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELV 259
>sp|Q1CKP3|MIAB_YERPN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=miaB
PE=3 SV=2
Length = 474
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G T+ DIC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID-RVRFTTSHP 241
Query: 125 IFIS---VDPERDTPELVG 140
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELVS 260
>sp|Q0WDR2|MIAB_YERPE (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Yersinia pestis GN=miaB PE=3 SV=1
Length = 474
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G T+ DIC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID-RVRFTTSHP 241
Query: 125 IFIS---VDPERDTPELVG 140
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELVS 260
>sp|Q1C531|MIAB_YERPA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=miaB
PE=3 SV=2
Length = 474
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G T+ DIC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID-RVRFTTSHP 241
Query: 125 IFIS---VDPERDTPELVG 140
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELVS 260
>sp|A4TNY6|MIAB_YERPP (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Yersinia pestis (strain Pestoides F) GN=miaB PE=3
SV=2
Length = 474
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G T+ DIC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID-RVRFTTSHP 241
Query: 125 IFIS---VDPERDTPELVG 140
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELVS 260
>sp|A9R6X8|MIAB_YERPG (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Yersinia pestis bv. Antiqua (strain Angola) GN=miaB
PE=3 SV=2
Length = 474
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G T+ DIC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID-RVRFTTSHP 241
Query: 125 IFIS---VDPERDTPELVG 140
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELVS 260
>sp|A1JQA3|MIAB_YERE8 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Yersinia enterocolitica serotype O:8 / biotype 1B
(strain 8081) GN=miaB PE=3 SV=1
Length = 474
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G T+ DIC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID-RVRFTTSHP 241
Query: 125 IFIS---VDPERDTPELVG 140
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELVS 260
>sp|Q66DD3|MIAB_YERPS (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Yersinia pseudotuberculosis serotype I (strain
IP32953) GN=miaB PE=3 SV=1
Length = 474
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G T+ DIC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID-RIRFTTSHP 241
Query: 125 IFIS---VDPERDTPELVG 140
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELVS 260
>sp|B2K896|MIAB_YERPB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Yersinia pseudotuberculosis serotype IB (strain
PB1/+) GN=miaB PE=3 SV=2
Length = 474
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G T+ DIC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID-RIRFTTSHP 241
Query: 125 IFIS---VDPERDTPELVG 140
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELVS 260
>sp|A7FKU9|MIAB_YERP3 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
31758) GN=miaB PE=3 SV=1
Length = 474
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G T+ DIC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID-RIRFTTSHP 241
Query: 125 IFIS---VDPERDTPELVG 140
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELVS 260
>sp|B1JG95|MIAB_YERPY (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Yersinia pseudotuberculosis serotype O:3 (strain
YPIII) GN=miaB PE=3 SV=2
Length = 474
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G T+ DIC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICSFAELLRLVAAIDGID-RIRFTTSHP 241
Query: 125 IFIS---VDPERDTPELVG 140
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELVS 260
>sp|A5UBB9|MIAB_HAEIE (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Haemophilus influenzae (strain PittEE) GN=miaB PE=3
SV=1
Length = 474
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G TH IC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGID-RLRFTTSHP 241
Query: 125 IFIS---VDPERDTPELV 139
I + +D RDTPELV
Sbjct: 242 IEFTNDIIDVYRDTPELV 259
>sp|Q4QPM5|MIAB_HAEI8 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Haemophilus influenzae (strain 86-028NP) GN=miaB PE=3
SV=1
Length = 474
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G TH IC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGID-RLRFTTSHP 241
Query: 125 IFIS---VDPERDTPELV 139
I + +D RDTPELV
Sbjct: 242 IEFTNDIIDVYRDTPELV 259
>sp|Q57163|MIAB_HAEIN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=miaB PE=3 SV=1
Length = 474
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G TH IC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGID-RLRFTTSHP 241
Query: 125 IFIS---VDPERDTPELV 139
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELV 259
>sp|A5UFJ1|MIAB_HAEIG (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Haemophilus influenzae (strain PittGG) GN=miaB PE=3
SV=1
Length = 474
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
FE+ + V+ + LG+ Y G TH IC EL ++ A ++ ID + P
Sbjct: 183 FEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGID-RLRFTTSHP 241
Query: 125 IFIS---VDPERDTPELV 139
I + +D RDTPELV
Sbjct: 242 IEFTDDIIDVYRDTPELV 259
>sp|Q2NUT9|MIAB_SODGM (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Sodalis
glossinidius (strain morsitans) GN=miaB PE=3 SV=1
Length = 474
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNIT-- 123
FE+ ++ V+ + LG+ Y G ++ IC ++ +V IDG + IT
Sbjct: 183 FEIAQLADQGVREVNLLGQNVNAYRGASYDGGICT--FAELLRLVAAIDGIDRIRYITSH 240
Query: 124 PIFIS---VDPERDTPELVG 140
PI + +D RDTPELV
Sbjct: 241 PIEFTDDIIDVYRDTPELVS 260
>sp|A4IR80|SYA_GEOTN Alanine--tRNA ligase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=alaS PE=3 SV=2
Length = 878
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 88 IYFGFTHCPDICPDELEKMAAVVNK 112
+ F FTH + PDELE++ A+VN+
Sbjct: 596 LRFDFTHFGQVKPDELERIEAIVNE 620
>sp|Q9ZHF0|BCP_BUCAP Putative peroxiredoxin bcp OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=bcp PE=3 SV=2
Length = 158
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 62 IGGKFELVDCNNKPVKSEDFLGKWALIYF 90
I KF L +C +K +K DFLGK L+YF
Sbjct: 9 IAPKFILPNCIDKSIKLSDFLGKKVLVYF 37
>sp|Q91ZB0|ALPK2_MOUSE Alpha-protein kinase 2 OS=Mus musculus GN=Alpk2 PE=2 SV=3
Length = 2144
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 107 AAVVNKIDGQPNVPNITPIFISVDPERDTP------ELVGKYVK 144
AA ++G VP I PIF+ PE + P EL+G++VK
Sbjct: 1969 AAEAQPLEGFGEVPEIIPIFLIHRPENNIPYATVEEELIGEFVK 2012
>sp|Q86TB3|ALPK2_HUMAN Alpha-protein kinase 2 OS=Homo sapiens GN=ALPK2 PE=2 SV=3
Length = 2170
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 107 AAVVNKIDGQPNVPNITPIFISVDPERDTP------ELVGKYVK 144
AA ++G VP I PIF+ PE + P EL+G++VK
Sbjct: 1996 AAEAQPLEGFGEVPEIIPIFLIHRPENNIPYATVEEELIGEFVK 2039
>sp|A3QH41|MIAB_SHELP (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
GN=miaB PE=3 SV=1
Length = 474
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP-DELEKMAAVVNKIDGQPNVPNITP 124
E+ + V+ + LG+ Y G TH DIC EL + A ++ ID + P
Sbjct: 183 LEIAQLAEQGVREVNLLGQNVNAYRGATHDDDICTFAELLRYVAAIDGID-RIRFTTSHP 241
Query: 125 IFIS---VDPERDTPELVG 140
I + +D DTPELV
Sbjct: 242 IEFTQDIIDVYEDTPELVS 260
>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica
GN=Os03g0405900 PE=2 SV=1
Length = 581
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 33 GILFYMWNLKKAKQNALEKERRRNLGKVAIGGKFELV---DCNNKPVKSEDFLGKWALIY 89
G F L+ + A K + L + + G + V D PV + +GK L+Y
Sbjct: 315 GFPFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFVLGKDGAKVPVS--ELVGKTVLLY 372
Query: 90 FGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135
F CP C L K+ NKI + N + +FIS D E+ +
Sbjct: 373 FSAKWCPP-CRAFLPKLVNEYNKIKEKHN--DFEIVFISSDREQSS 415
>sp|P43221|TLPA_BRAJA Thiol:disulfide interchange protein TlpA OS=Bradyrhizobium
japonicum (strain USDA 110) GN=tlpA PE=1 SV=1
Length = 221
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 70 DCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV 129
D + KP K DF GK L+ T C C E+ + + K+ G PN + I++
Sbjct: 82 DADGKPKKLSDFRGKTLLVNLWATWCVP-CRKEMPALDELQGKLSG----PNFEVVAINI 136
Query: 130 DPERDTPELVGKYVKEFSPKFIG 152
D RD PE ++KE + +G
Sbjct: 137 D-TRD-PEKPKTFLKEANLTRLG 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,624,525
Number of Sequences: 539616
Number of extensions: 3159361
Number of successful extensions: 6905
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 6844
Number of HSP's gapped (non-prelim): 53
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)