Query psy17592
Match_columns 183
No_of_seqs 225 out of 1651
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 18:02:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2792|consensus 100.0 9E-32 1.9E-36 205.1 19.5 169 14-183 67-238 (280)
2 PF02630 SCO1-SenC: SCO1/SenC; 100.0 6.3E-28 1.4E-32 180.0 11.9 117 59-177 28-144 (174)
3 COG1999 Uncharacterized protei 100.0 8.8E-27 1.9E-31 177.9 17.3 117 64-182 48-166 (207)
4 cd02968 SCO SCO (an acronym fo 99.9 9.2E-24 2E-28 152.0 13.9 112 63-175 2-113 (142)
5 PRK03147 thiol-disulfide oxido 99.9 7E-21 1.5E-25 141.4 14.0 104 56-170 34-137 (173)
6 PTZ00056 glutathione peroxidas 99.9 5.5E-21 1.2E-25 145.4 10.7 89 61-154 17-109 (199)
7 cd00340 GSH_Peroxidase Glutath 99.8 8.9E-21 1.9E-25 138.5 10.2 87 63-155 2-93 (152)
8 PRK15412 thiol:disulfide inter 99.8 5.9E-21 1.3E-25 143.8 9.0 98 59-171 41-142 (185)
9 PF08534 Redoxin: Redoxin; In 99.8 2E-20 4.4E-25 135.4 11.1 102 60-173 3-107 (146)
10 PRK09437 bcp thioredoxin-depen 99.8 2.1E-20 4.5E-25 136.7 11.2 105 57-173 4-109 (154)
11 cd03014 PRX_Atyp2cys Peroxired 99.8 1.7E-20 3.6E-25 135.5 10.4 101 60-173 3-105 (143)
12 PRK00522 tpx lipid hydroperoxi 99.8 1.9E-20 4.1E-25 138.9 11.0 103 58-173 19-123 (167)
13 TIGR02661 MauD methylamine deh 99.8 8.6E-20 1.9E-24 137.9 13.8 98 57-170 46-145 (189)
14 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 3.5E-20 7.6E-25 130.2 10.5 100 60-171 2-102 (124)
15 cd03018 PRX_AhpE_like Peroxire 99.8 2.6E-20 5.7E-25 135.1 9.9 105 59-173 3-109 (149)
16 cd03008 TryX_like_RdCVF Trypar 99.8 5.1E-20 1.1E-24 133.1 9.8 93 74-170 16-111 (146)
17 cd03017 PRX_BCP Peroxiredoxin 99.8 9.3E-20 2E-24 130.8 9.4 100 62-173 2-102 (140)
18 cd02969 PRX_like1 Peroxiredoxi 99.8 1.8E-19 3.8E-24 134.0 10.6 102 62-171 3-109 (171)
19 PLN02412 probable glutathione 99.8 1.7E-19 3.6E-24 133.8 9.9 90 60-154 6-100 (167)
20 PLN02399 phospholipid hydroper 99.8 8.8E-20 1.9E-24 141.5 8.5 90 60-154 76-170 (236)
21 TIGR02540 gpx7 putative glutat 99.8 1.9E-19 4.2E-24 131.5 9.5 86 64-154 3-93 (153)
22 TIGR03137 AhpC peroxiredoxin. 99.8 2.1E-19 4.6E-24 135.6 9.5 101 60-172 5-113 (187)
23 cd02971 PRX_family Peroxiredox 99.8 5.2E-19 1.1E-23 126.8 10.3 99 63-173 2-102 (140)
24 cd03015 PRX_Typ2cys Peroxiredo 99.8 6.6E-19 1.4E-23 131.2 10.1 102 60-173 2-115 (173)
25 COG1225 Bcp Peroxiredoxin [Pos 99.8 1.4E-18 3E-23 126.0 11.0 106 57-174 4-110 (157)
26 cd02964 TryX_like_family Trypa 99.8 1E-18 2.3E-23 124.6 9.6 94 69-170 4-98 (132)
27 cd03010 TlpA_like_DsbE TlpA-li 99.8 4.8E-19 1E-23 125.3 7.6 96 62-171 2-100 (127)
28 cd02967 mauD Methylamine utili 99.8 3.2E-18 6.9E-23 118.7 11.0 92 64-170 1-94 (114)
29 TIGR00385 dsbE periplasmic pro 99.8 6.4E-19 1.4E-23 131.4 7.8 96 60-170 37-136 (173)
30 PTZ00256 glutathione peroxidas 99.8 1.9E-18 4E-23 130.0 9.7 90 60-154 17-112 (183)
31 cd03012 TlpA_like_DipZ_like Tl 99.8 1.7E-18 3.8E-23 122.5 8.7 90 73-170 13-104 (126)
32 PRK13190 putative peroxiredoxi 99.8 1.5E-18 3.3E-23 132.4 8.1 104 59-171 4-110 (202)
33 cd03009 TryX_like_TryX_NRX Try 99.8 3.8E-18 8.1E-23 121.4 9.1 95 68-170 3-98 (131)
34 PRK14018 trifunctional thiored 99.8 1.2E-17 2.5E-22 142.1 12.3 106 57-172 32-140 (521)
35 cd02970 PRX_like2 Peroxiredoxi 99.7 8.9E-18 1.9E-22 121.4 9.3 99 63-173 2-102 (149)
36 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 2.1E-17 4.5E-22 116.1 8.2 93 64-171 1-93 (123)
37 PRK10382 alkyl hydroperoxide r 99.7 4.6E-17 9.9E-22 122.6 10.3 101 60-172 5-113 (187)
38 cd02966 TlpA_like_family TlpA- 99.7 5.3E-17 1.1E-21 111.3 9.7 96 65-170 1-96 (116)
39 PRK10606 btuE putative glutath 99.7 4.9E-17 1.1E-21 121.9 10.2 85 63-153 5-94 (183)
40 PRK13191 putative peroxiredoxi 99.7 5.3E-17 1.1E-21 124.9 9.0 102 59-172 9-117 (215)
41 cd03016 PRX_1cys Peroxiredoxin 99.7 1.2E-16 2.5E-21 122.1 10.7 98 61-171 3-108 (203)
42 PRK13599 putative peroxiredoxi 99.7 7.4E-17 1.6E-21 124.0 9.6 100 60-171 5-111 (215)
43 PF13905 Thioredoxin_8: Thiore 99.7 2.5E-16 5.4E-21 105.8 9.3 82 83-171 1-82 (95)
44 PRK15000 peroxidase; Provision 99.7 1.7E-16 3.7E-21 120.8 9.0 101 60-172 5-119 (200)
45 PTZ00253 tryparedoxin peroxida 99.7 1.2E-16 2.6E-21 121.7 7.3 102 59-172 8-121 (199)
46 PTZ00137 2-Cys peroxiredoxin; 99.7 4.3E-16 9.3E-21 122.5 9.9 102 58-171 69-182 (261)
47 PLN02919 haloacid dehalogenase 99.7 5.1E-16 1.1E-20 142.6 10.8 104 58-170 392-501 (1057)
48 cd03013 PRX5_like Peroxiredoxi 99.7 9.2E-16 2E-20 112.4 10.0 103 60-174 2-113 (155)
49 PRK13189 peroxiredoxin; Provis 99.6 1.4E-15 3E-20 117.6 10.4 100 59-171 11-118 (222)
50 TIGR01626 ytfJ_HI0045 conserve 99.6 1.5E-15 3.3E-20 113.5 10.1 89 72-172 48-146 (184)
51 KOG2501|consensus 99.6 1.8E-15 3.9E-20 109.0 8.9 103 65-173 14-117 (157)
52 PRK13728 conjugal transfer pro 99.5 3.7E-14 8E-19 105.6 9.5 55 63-131 55-109 (181)
53 COG0450 AhpC Peroxiredoxin [Po 99.4 8.1E-13 1.8E-17 98.2 7.8 106 60-176 6-122 (194)
54 TIGR02738 TrbB type-F conjugat 99.4 1.7E-12 3.6E-17 94.8 7.8 48 72-131 43-90 (153)
55 KOG0855|consensus 99.3 1.6E-11 3.5E-16 88.8 6.8 104 56-170 62-166 (211)
56 cd02985 TRX_CDSP32 TRX family, 99.2 1.2E-10 2.7E-15 79.4 8.4 56 81-147 13-68 (103)
57 cd02999 PDI_a_ERp44_like PDIa 99.1 2.1E-10 4.6E-15 77.9 5.7 45 79-130 14-58 (100)
58 cd02950 TxlA TRX-like protein 99.1 9.2E-11 2E-15 84.7 4.1 58 68-131 3-62 (142)
59 cd02948 TRX_NDPK TRX domain, T 99.0 7.5E-10 1.6E-14 75.3 6.6 63 82-153 16-78 (102)
60 COG2077 Tpx Peroxiredoxin [Pos 99.0 9.9E-09 2.1E-13 73.3 10.8 108 56-175 17-125 (158)
61 cd02962 TMX2 TMX2 family; comp 99.0 2.5E-09 5.4E-14 77.9 8.0 53 82-142 46-98 (152)
62 TIGR02740 TraF-like TraF-like 98.9 5.7E-10 1.2E-14 88.7 3.7 50 74-131 157-206 (271)
63 cd02954 DIM1 Dim1 family; Dim1 98.9 3E-09 6.4E-14 73.7 6.7 43 82-130 13-55 (114)
64 PF00255 GSHPx: Glutathione pe 98.9 2E-08 4.3E-13 68.9 10.3 83 65-153 3-90 (108)
65 KOG0910|consensus 98.9 2.5E-09 5.5E-14 76.6 5.4 55 82-145 60-114 (150)
66 KOG0852|consensus 98.9 6.2E-09 1.3E-13 76.0 7.1 109 64-183 11-129 (196)
67 cd02963 TRX_DnaJ TRX domain, D 98.9 3E-09 6.6E-14 73.5 4.9 45 81-130 22-66 (111)
68 cd03003 PDI_a_ERdj5_N PDIa fam 98.8 7.6E-09 1.6E-13 70.0 5.6 43 82-130 17-59 (101)
69 cd02956 ybbN ybbN protein fami 98.8 1.4E-08 3E-13 67.9 6.7 43 82-130 11-53 (96)
70 KOG0907|consensus 98.8 1.3E-08 2.9E-13 69.7 6.5 58 82-153 20-81 (106)
71 cd02986 DLP Dim1 family, Dim1- 98.8 2.4E-08 5.1E-13 68.9 6.6 43 82-130 13-55 (114)
72 COG0386 BtuE Glutathione perox 98.8 2.4E-08 5.2E-13 71.6 6.6 83 64-152 6-93 (162)
73 cd03000 PDI_a_TMX3 PDIa family 98.8 2.1E-08 4.4E-13 68.3 6.0 46 82-130 14-59 (104)
74 PLN00410 U5 snRNP protein, DIM 98.8 2.8E-08 6E-13 71.4 6.8 51 82-141 22-72 (142)
75 cd02959 ERp19 Endoplasmic reti 98.7 8.7E-09 1.9E-13 72.0 3.8 81 79-168 15-98 (117)
76 PHA02278 thioredoxin-like prot 98.7 2.9E-08 6.4E-13 67.7 6.2 44 82-131 13-56 (103)
77 cd02994 PDI_a_TMX PDIa family, 98.7 2.4E-08 5.3E-13 67.4 5.7 44 81-130 15-58 (101)
78 cd02953 DsbDgamma DsbD gamma f 98.7 5.6E-08 1.2E-12 66.1 6.9 57 82-147 10-69 (104)
79 cd03006 PDI_a_EFP1_N PDIa fami 98.7 5.2E-08 1.1E-12 67.6 6.3 43 82-130 28-70 (113)
80 cd02993 PDI_a_APS_reductase PD 98.7 5.9E-08 1.3E-12 66.7 6.6 45 82-131 20-64 (109)
81 PRK09381 trxA thioredoxin; Pro 98.7 4.9E-08 1.1E-12 66.9 6.0 43 82-130 20-62 (109)
82 cd03005 PDI_a_ERp46 PDIa famil 98.6 5.1E-08 1.1E-12 65.7 4.8 43 85-130 18-60 (102)
83 COG3118 Thioredoxin domain-con 98.6 2.5E-08 5.4E-13 78.9 3.7 44 81-130 41-84 (304)
84 cd03002 PDI_a_MPD1_like PDI fa 98.6 8.7E-08 1.9E-12 65.4 5.6 44 82-131 17-60 (109)
85 cd03004 PDI_a_ERdj5_C PDIa fam 98.6 1.3E-07 2.7E-12 64.2 6.4 43 82-130 18-60 (104)
86 cd02996 PDI_a_ERp44 PDIa famil 98.6 8.9E-08 1.9E-12 65.6 5.4 48 82-130 17-65 (108)
87 TIGR01295 PedC_BrcD bacterioci 98.6 2.5E-07 5.4E-12 65.0 7.1 58 82-147 22-83 (122)
88 cd02949 TRX_NTR TRX domain, no 98.6 2.7E-07 5.8E-12 62.0 6.8 43 82-130 12-54 (97)
89 cd02952 TRP14_like Human TRX-r 98.6 1.1E-07 2.4E-12 66.5 4.9 44 82-131 20-70 (119)
90 PTZ00051 thioredoxin; Provisio 98.5 2.1E-07 4.5E-12 62.3 5.9 42 82-130 17-58 (98)
91 cd02992 PDI_a_QSOX PDIa family 98.5 3.1E-07 6.6E-12 63.8 6.9 45 83-130 19-63 (114)
92 PRK10996 thioredoxin 2; Provis 98.5 2.6E-07 5.7E-12 66.4 6.6 43 82-130 51-93 (139)
93 cd02951 SoxW SoxW family; SoxW 98.5 2.3E-07 4.9E-12 65.2 6.0 44 82-131 12-59 (125)
94 cd02997 PDI_a_PDIR PDIa family 98.5 2.6E-07 5.5E-12 62.4 5.6 45 82-130 16-60 (104)
95 cd02984 TRX_PICOT TRX domain, 98.5 4.1E-07 8.9E-12 60.7 6.4 42 83-130 14-55 (97)
96 cd02995 PDI_a_PDI_a'_C PDIa fa 98.5 2E-07 4.3E-12 62.9 4.5 44 83-130 18-61 (104)
97 cd02957 Phd_like Phosducin (Ph 98.5 6.5E-07 1.4E-11 61.9 7.0 41 83-130 24-64 (113)
98 cd02989 Phd_like_TxnDC9 Phosdu 98.5 9.3E-07 2E-11 61.3 7.4 42 82-130 21-62 (113)
99 TIGR01126 pdi_dom protein disu 98.4 2.8E-07 6.1E-12 61.8 4.5 45 82-130 12-56 (102)
100 cd02998 PDI_a_ERp38 PDIa famil 98.4 6.3E-07 1.4E-11 60.4 5.6 45 82-130 17-61 (105)
101 cd03001 PDI_a_P5 PDIa family, 98.4 1.1E-06 2.5E-11 59.1 5.8 42 83-130 18-59 (103)
102 KOG0854|consensus 98.4 2.2E-06 4.7E-11 63.0 7.3 103 58-168 7-115 (224)
103 cd02975 PfPDO_like_N Pyrococcu 98.3 1.8E-06 4E-11 59.8 6.6 51 82-142 21-71 (113)
104 cd02965 HyaE HyaE family; HyaE 98.3 1.9E-06 4.1E-11 59.4 6.5 43 82-130 26-70 (111)
105 PTZ00102 disulphide isomerase; 98.3 1.7E-06 3.6E-11 73.9 7.7 46 82-130 48-93 (477)
106 TIGR01068 thioredoxin thioredo 98.3 1.6E-06 3.5E-11 57.8 6.1 42 83-130 14-55 (101)
107 PF00085 Thioredoxin: Thioredo 98.3 1.6E-06 3.5E-11 58.1 5.4 43 82-130 16-58 (103)
108 PTZ00443 Thioredoxin domain-co 98.3 1.7E-06 3.8E-11 66.9 6.0 43 82-130 51-93 (224)
109 PF13098 Thioredoxin_2: Thiore 98.3 8.3E-07 1.8E-11 60.9 3.6 81 82-173 4-84 (112)
110 KOG1651|consensus 98.3 3.9E-06 8.5E-11 61.0 7.2 84 64-152 15-103 (171)
111 TIGR00424 APS_reduc 5'-adenyly 98.3 1.8E-06 3.9E-11 73.3 5.8 44 82-130 370-413 (463)
112 cd02987 Phd_like_Phd Phosducin 98.2 3.6E-06 7.7E-11 62.9 5.8 41 83-130 83-123 (175)
113 PF00837 T4_deiodinase: Iodoth 98.2 1.7E-06 3.6E-11 66.9 3.7 116 56-179 72-210 (237)
114 cd02961 PDI_a_family Protein D 98.2 5.9E-06 1.3E-10 54.7 5.8 45 82-130 14-58 (101)
115 COG0526 TrxA Thiol-disulfide i 98.1 5.4E-06 1.2E-10 55.7 5.4 49 76-130 25-73 (127)
116 TIGR00411 redox_disulf_1 small 98.1 1.4E-05 3.1E-10 51.5 6.6 47 86-141 2-48 (82)
117 cd02988 Phd_like_VIAF Phosduci 98.1 5.8E-06 1.3E-10 62.6 5.4 42 82-130 101-142 (192)
118 PRK00293 dipZ thiol:disulfide 98.1 7.2E-06 1.6E-10 71.8 6.6 57 81-147 472-531 (571)
119 cd02947 TRX_family TRX family; 98.1 1.5E-05 3.3E-10 51.6 6.5 41 83-130 10-50 (93)
120 PTZ00102 disulphide isomerase; 98.1 5.6E-06 1.2E-10 70.7 5.3 59 68-130 359-418 (477)
121 cd02982 PDI_b'_family Protein 98.1 1.1E-05 2.3E-10 54.4 5.5 43 82-130 11-53 (103)
122 PLN02309 5'-adenylylsulfate re 98.0 1E-05 2.2E-10 68.7 5.9 44 82-130 364-407 (457)
123 cd02955 SSP411 TRX domain, SSP 98.0 5.3E-05 1.1E-09 53.4 8.3 44 81-130 13-59 (124)
124 cd03065 PDI_b_Calsequestrin_N 98.0 2.2E-05 4.8E-10 55.0 5.7 54 83-142 27-83 (120)
125 TIGR01130 ER_PDI_fam protein d 98.0 1.8E-05 3.9E-10 67.0 6.2 46 82-130 17-62 (462)
126 PTZ00062 glutaredoxin; Provisi 97.9 2.2E-05 4.7E-10 60.0 5.2 40 84-130 18-57 (204)
127 cd02973 TRX_GRX_like Thioredox 97.8 9.5E-05 2.1E-09 45.9 6.3 38 86-130 2-39 (67)
128 PF05988 DUF899: Bacterial pro 97.8 0.00019 4.1E-09 54.5 8.9 108 52-172 35-150 (211)
129 PHA02125 thioredoxin-like prot 97.8 3.7E-05 8E-10 49.2 4.4 22 87-109 2-23 (75)
130 TIGR00412 redox_disulf_2 small 97.8 7.4E-05 1.6E-09 47.9 5.8 35 87-127 2-36 (76)
131 TIGR01130 ER_PDI_fam protein d 97.8 5.1E-05 1.1E-09 64.2 6.2 46 82-130 363-408 (462)
132 cd03026 AhpF_NTD_C TRX-GRX-lik 97.8 9.8E-05 2.1E-09 48.9 5.9 45 79-130 8-52 (89)
133 KOG0908|consensus 97.8 3.4E-05 7.3E-10 59.8 4.1 42 82-130 20-61 (288)
134 PF13899 Thioredoxin_7: Thiore 97.6 0.00023 5E-09 46.1 6.1 43 82-130 16-61 (82)
135 TIGR02187 GlrX_arch Glutaredox 97.6 0.00025 5.5E-09 54.5 6.8 51 81-141 131-181 (215)
136 cd01659 TRX_superfamily Thiore 97.5 0.00027 5.9E-09 41.7 4.7 38 87-131 1-38 (69)
137 PF13728 TraF: F plasmid trans 97.4 0.0002 4.4E-09 55.1 4.7 46 78-131 115-160 (215)
138 PRK13703 conjugal pilus assemb 97.3 0.00028 6.1E-09 55.4 3.9 46 78-131 138-183 (248)
139 COG4312 Uncharacterized protei 97.3 0.0019 4E-08 49.3 8.1 109 55-176 44-160 (247)
140 PF14595 Thioredoxin_9: Thiore 97.3 6.7E-05 1.4E-09 53.2 0.4 57 78-144 36-92 (129)
141 TIGR02196 GlrX_YruB Glutaredox 97.3 0.0011 2.3E-08 41.2 5.8 46 87-147 2-47 (74)
142 TIGR02187 GlrX_arch Glutaredox 97.2 0.00073 1.6E-08 52.0 5.6 43 81-130 17-62 (215)
143 TIGR02739 TraF type-F conjugat 97.2 0.00041 8.8E-09 54.8 4.1 47 78-132 145-191 (256)
144 TIGR02200 GlrX_actino Glutared 97.2 0.001 2.2E-08 42.0 5.0 32 87-130 2-33 (77)
145 COG0678 AHP1 Peroxiredoxin [Po 97.0 0.0066 1.4E-07 43.8 7.8 104 62-176 8-123 (165)
146 cd02960 AGR Anterior Gradient 96.9 0.0025 5.4E-08 45.2 5.2 24 82-106 22-45 (130)
147 KOG1731|consensus 96.7 0.0007 1.5E-08 58.3 1.3 44 84-130 58-101 (606)
148 cd02958 UAS UAS family; UAS is 96.6 0.016 3.5E-07 39.7 7.7 23 81-104 15-37 (114)
149 TIGR02180 GRX_euk Glutaredoxin 96.6 0.0057 1.2E-07 39.2 5.1 49 87-146 1-49 (84)
150 KOG0190|consensus 96.5 0.0032 7E-08 53.9 4.2 34 82-116 383-416 (493)
151 cd03007 PDI_a_ERp29_N PDIa fam 96.4 0.02 4.4E-07 39.8 6.8 61 82-149 17-77 (116)
152 PRK11200 grxA glutaredoxin 1; 96.3 0.012 2.6E-07 38.2 5.1 38 87-131 3-40 (85)
153 PF04592 SelP_N: Selenoprotein 96.2 0.014 3.1E-07 45.1 5.7 82 64-153 11-93 (238)
154 PF06110 DUF953: Eukaryotic pr 96.1 0.014 3.1E-07 40.7 4.9 43 82-130 18-67 (119)
155 KOG0190|consensus 96.1 0.0086 1.9E-07 51.3 4.6 55 83-147 42-96 (493)
156 KOG0541|consensus 96.1 0.026 5.7E-07 40.9 6.3 91 75-175 34-128 (171)
157 cd03023 DsbA_Com1_like DsbA fa 95.9 0.02 4.4E-07 40.7 5.3 31 82-113 4-34 (154)
158 PRK10877 protein disulfide iso 95.9 0.044 9.6E-07 42.7 7.4 83 83-174 107-205 (232)
159 KOG0912|consensus 95.9 0.013 2.9E-07 47.0 4.4 46 83-131 13-58 (375)
160 KOG0191|consensus 95.7 0.02 4.3E-07 47.8 5.2 33 82-115 46-78 (383)
161 cd02976 NrdH NrdH-redoxin (Nrd 95.7 0.023 5.1E-07 34.9 4.3 33 87-131 2-34 (73)
162 KOG3425|consensus 95.7 0.04 8.6E-07 38.2 5.5 43 82-130 24-74 (128)
163 smart00594 UAS UAS domain. 95.4 0.034 7.4E-07 38.8 4.7 24 81-105 25-48 (122)
164 PF13462 Thioredoxin_4: Thiore 95.4 0.059 1.3E-06 38.8 6.1 50 76-129 5-54 (162)
165 PF00462 Glutaredoxin: Glutare 95.3 0.021 4.6E-07 34.4 3.0 32 87-130 1-32 (60)
166 COG4232 Thiol:disulfide interc 95.2 0.024 5.2E-07 49.3 3.9 58 82-147 473-531 (569)
167 cd02066 GRX_family Glutaredoxi 95.0 0.062 1.4E-06 32.7 4.7 32 87-130 2-33 (72)
168 cd03020 DsbA_DsbC_DsbG DsbA fa 94.9 0.19 4.2E-06 37.8 8.0 26 82-108 76-101 (197)
169 cd03419 GRX_GRXh_1_2_like Glut 94.9 0.13 2.8E-06 32.6 5.9 47 87-146 2-48 (82)
170 cd03019 DsbA_DsbA DsbA family, 94.8 0.16 3.5E-06 37.1 7.2 32 82-114 14-45 (178)
171 PHA03050 glutaredoxin; Provisi 94.8 0.18 3.8E-06 34.5 6.7 22 87-109 15-36 (108)
172 cd03418 GRX_GRXb_1_3_like Glut 94.7 0.13 2.7E-06 32.1 5.5 46 87-147 2-47 (75)
173 cd03027 GRX_DEP Glutaredoxin ( 94.4 0.11 2.4E-06 32.5 4.7 31 88-130 4-34 (73)
174 TIGR02181 GRX_bact Glutaredoxi 94.4 0.11 2.5E-06 32.9 4.8 45 88-147 2-46 (79)
175 TIGR02183 GRXA Glutaredoxin, G 94.2 0.25 5.4E-06 32.1 6.2 37 87-130 2-38 (86)
176 cd03032 ArsC_Spx Arsenate Redu 94.0 0.11 2.5E-06 35.7 4.5 51 88-150 3-53 (115)
177 PF06053 DUF929: Domain of unk 93.9 0.3 6.5E-06 38.5 7.0 32 82-114 57-88 (249)
178 PRK01655 spxA transcriptional 93.6 0.12 2.5E-06 36.7 4.0 52 87-150 2-53 (131)
179 cd02977 ArsC_family Arsenate R 93.6 0.2 4.2E-06 33.8 4.9 49 88-148 2-50 (105)
180 cd03036 ArsC_like Arsenate Red 93.5 0.1 2.2E-06 35.8 3.4 49 89-149 3-51 (111)
181 TIGR02189 GlrX-like_plant Glut 93.4 0.36 7.8E-06 32.4 6.0 33 87-131 10-42 (99)
182 cd03035 ArsC_Yffb Arsenate Red 93.2 0.24 5.3E-06 33.6 4.9 48 88-147 2-49 (105)
183 PF13911 AhpC-TSA_2: AhpC/TSA 93.2 0.26 5.6E-06 33.7 5.1 55 106-171 2-56 (115)
184 PRK12559 transcriptional regul 93.1 0.2 4.2E-06 35.6 4.5 51 87-149 2-52 (131)
185 TIGR00365 monothiol glutaredox 93.1 0.27 5.9E-06 32.8 5.0 49 82-146 10-62 (97)
186 PF03190 Thioredox_DsbH: Prote 92.7 0.28 6E-06 36.1 4.9 55 76-143 30-90 (163)
187 cd03028 GRX_PICOT_like Glutare 92.4 0.33 7.1E-06 31.9 4.6 49 82-146 6-58 (90)
188 TIGR01617 arsC_related transcr 92.3 0.3 6.5E-06 33.7 4.4 50 89-150 3-52 (117)
189 COG0695 GrxC Glutaredoxin and 91.8 0.95 2.1E-05 29.1 6.1 46 87-146 3-48 (80)
190 TIGR02194 GlrX_NrdH Glutaredox 91.7 0.53 1.1E-05 29.3 4.8 31 88-130 2-32 (72)
191 PRK10638 glutaredoxin 3; Provi 91.4 0.46 1E-05 30.5 4.4 46 87-147 4-49 (83)
192 PRK10329 glutaredoxin-like pro 91.4 0.84 1.8E-05 29.4 5.5 32 87-130 3-34 (81)
193 PRK10954 periplasmic protein d 91.2 0.52 1.1E-05 35.9 5.1 33 82-115 36-71 (207)
194 PRK11657 dsbG disulfide isomer 91.1 0.56 1.2E-05 37.0 5.4 28 83-111 117-144 (251)
195 KOG0911|consensus 91.0 0.23 5.1E-06 38.2 2.9 60 82-151 16-75 (227)
196 PRK13344 spxA transcriptional 90.7 0.63 1.4E-05 33.0 4.8 51 88-150 3-53 (132)
197 TIGR02190 GlrX-dom Glutaredoxi 90.5 0.61 1.3E-05 29.7 4.2 37 83-131 6-42 (79)
198 cd03029 GRX_hybridPRX5 Glutare 90.2 1 2.2E-05 27.9 5.0 32 87-130 3-34 (72)
199 KOG1752|consensus 89.0 2.4 5.1E-05 28.8 6.4 51 83-147 13-63 (104)
200 KOG0913|consensus 88.6 0.14 3.1E-06 39.7 0.2 47 82-132 39-85 (248)
201 cd02972 DsbA_family DsbA famil 87.2 1.1 2.3E-05 28.7 3.8 38 87-130 1-38 (98)
202 KOG0191|consensus 87.2 1.5 3.2E-05 36.7 5.4 44 83-130 162-205 (383)
203 PF13192 Thioredoxin_3: Thiore 86.9 4 8.6E-05 25.6 6.2 22 91-113 6-27 (76)
204 COG1393 ArsC Arsenate reductas 86.9 1.2 2.6E-05 30.9 4.0 55 87-153 3-57 (117)
205 PRK10824 glutaredoxin-4; Provi 86.2 1.7 3.6E-05 30.2 4.3 49 82-146 13-65 (115)
206 KOG4277|consensus 86.0 0.15 3.4E-06 41.1 -0.9 32 84-116 44-75 (468)
207 COG1651 DsbG Protein-disulfide 85.7 3.6 7.8E-05 31.8 6.6 45 70-115 71-115 (244)
208 COG4545 Glutaredoxin-related p 85.7 1.9 4.2E-05 27.4 4.0 44 88-146 5-48 (85)
209 TIGR03143 AhpF_homolog putativ 85.3 3.1 6.7E-05 36.6 6.7 42 82-130 475-516 (555)
210 PF02114 Phosducin: Phosducin; 84.8 3.7 7.9E-05 32.7 6.3 42 82-130 145-186 (265)
211 PRK15317 alkyl hydroperoxide r 83.9 3.7 7.9E-05 35.8 6.5 52 81-142 114-165 (517)
212 PRK10026 arsenate reductase; P 83.8 1.7 3.7E-05 31.2 3.7 50 87-148 4-53 (141)
213 KOG0914|consensus 82.4 3.4 7.3E-05 32.0 4.9 44 72-116 131-176 (265)
214 TIGR00995 3a0901s06TIC22 chlor 82.1 11 0.00024 30.1 7.9 78 63-156 82-160 (270)
215 KOG4498|consensus 81.9 2.8 6.1E-05 31.5 4.2 55 69-128 35-91 (197)
216 PRK01018 50S ribosomal protein 81.8 9.8 0.00021 25.5 6.6 42 121-162 32-73 (99)
217 cd03034 ArsC_ArsC Arsenate Red 81.3 4.4 9.5E-05 27.7 4.8 50 88-149 2-51 (112)
218 PRK10853 putative reductase; P 81.2 4.2 9.1E-05 28.2 4.8 49 87-147 2-50 (118)
219 TIGR00014 arsC arsenate reduct 80.7 5.3 0.00012 27.4 5.1 49 88-148 2-50 (114)
220 PTZ00062 glutaredoxin; Provisi 80.4 3.8 8.2E-05 31.3 4.7 49 82-146 111-163 (204)
221 cd02991 UAS_ETEA UAS family, E 80.2 5 0.00011 27.7 4.9 29 81-110 15-49 (116)
222 PRK05583 ribosomal protein L7A 80.1 11 0.00024 25.5 6.4 44 121-168 33-76 (104)
223 PTZ00106 60S ribosomal protein 80.0 10 0.00022 25.9 6.3 42 121-162 41-82 (108)
224 cd03033 ArsC_15kD Arsenate Red 79.9 6 0.00013 27.2 5.2 48 88-147 3-50 (113)
225 PRK06683 hypothetical protein; 79.8 11 0.00024 24.3 6.1 48 121-172 27-74 (82)
226 PRK07021 fliL flagellar basal 79.2 20 0.00044 26.2 8.1 22 69-90 62-85 (162)
227 PF01323 DSBA: DSBA-like thior 79.0 2.9 6.4E-05 30.8 3.7 41 86-131 1-41 (193)
228 TIGR01616 nitro_assoc nitrogen 78.9 7.4 0.00016 27.3 5.4 50 86-147 2-51 (126)
229 TIGR03759 conj_TIGR03759 integ 78.1 8.7 0.00019 29.2 5.8 54 84-150 109-162 (200)
230 TIGR03140 AhpF alkyl hydropero 78.0 7.7 0.00017 33.8 6.4 52 81-142 115-166 (515)
231 PRK13601 putative L7Ae-like ri 76.4 15 0.00033 23.7 6.0 46 121-170 24-69 (82)
232 COG2179 Predicted hydrolase of 76.1 14 0.0003 27.4 6.3 82 82-171 26-110 (175)
233 PF03960 ArsC: ArsC family; I 76.0 4.6 9.9E-05 27.4 3.7 54 90-155 1-54 (110)
234 PHA03075 glutaredoxin-like pro 74.6 2.8 6.2E-05 29.0 2.2 63 84-151 2-71 (123)
235 PRK13602 putative ribosomal pr 74.0 20 0.00043 23.1 6.1 46 121-170 27-72 (82)
236 PRK07714 hypothetical protein; 73.9 19 0.00041 24.0 6.2 44 121-168 34-77 (100)
237 PF05176 ATP-synt_10: ATP10 pr 72.8 7.8 0.00017 30.7 4.7 64 64-130 102-166 (252)
238 PF06796 NapE: Periplasmic nit 70.2 13 0.00029 22.2 4.1 21 4-24 1-21 (56)
239 KOG3414|consensus 69.1 24 0.00051 25.0 5.8 43 82-130 22-64 (142)
240 TIGR03143 AhpF_homolog putativ 68.4 17 0.00037 32.0 6.3 66 78-153 361-426 (555)
241 PF05768 DUF836: Glutaredoxin- 66.5 7.7 0.00017 24.7 2.9 52 87-153 2-53 (81)
242 PF12273 RCR: Chitin synthesis 66.3 5.8 0.00013 27.9 2.5 8 21-28 2-9 (130)
243 cd03024 DsbA_FrnE DsbA family, 65.8 13 0.00028 27.6 4.5 25 89-114 3-27 (201)
244 COG1331 Highly conserved prote 64.5 11 0.00023 34.0 4.2 39 82-131 42-86 (667)
245 PF11009 DUF2847: Protein of u 64.2 36 0.00077 23.2 5.9 57 82-147 18-74 (105)
246 PF01248 Ribosomal_L7Ae: Ribos 63.9 31 0.00067 22.4 5.6 56 107-170 21-77 (95)
247 KOG2961|consensus 62.6 60 0.0013 23.9 7.4 84 62-149 21-111 (190)
248 PRK12759 bifunctional gluaredo 62.0 13 0.00028 31.5 4.2 32 87-130 4-35 (410)
249 cd03031 GRX_GRX_like Glutaredo 61.0 41 0.00088 24.3 6.1 33 86-130 2-39 (147)
250 PRK07283 hypothetical protein; 61.0 46 0.001 22.1 6.0 38 121-159 34-71 (98)
251 COG2332 CcmE Cytochrome c-type 60.1 14 0.0003 26.8 3.4 23 18-40 7-29 (153)
252 PF09695 YtfJ_HI0045: Bacteria 60.0 41 0.00089 24.7 5.9 91 72-170 26-122 (160)
253 PF07423 DUF1510: Protein of u 59.4 4.5 9.7E-05 31.3 0.9 13 165-177 195-207 (217)
254 PF02966 DIM1: Mitosis protein 58.9 34 0.00074 24.3 5.2 43 82-130 19-61 (133)
255 PF10281 Ish1: Putative stress 56.6 27 0.00057 18.8 3.5 31 135-165 5-35 (38)
256 PF08235 LNS2: LNS2 (Lipin/Ned 54.6 32 0.0007 25.2 4.7 65 68-146 3-67 (157)
257 PHA02819 hypothetical protein; 54.1 31 0.00067 21.6 3.8 9 18-26 43-51 (71)
258 PHA03054 IMV membrane protein; 52.9 38 0.00083 21.2 4.1 10 18-27 45-54 (72)
259 PF02670 DXP_reductoisom: 1-de 52.1 62 0.0013 22.8 5.7 34 120-156 23-56 (129)
260 TIGR01533 lipo_e_P4 5'-nucleot 51.8 69 0.0015 25.5 6.5 102 64-171 75-192 (266)
261 COG2911 Uncharacterized protei 51.6 41 0.00089 33.0 6.0 48 64-111 64-112 (1278)
262 KOG3170|consensus 50.8 29 0.00062 26.7 3.9 33 82-115 110-142 (240)
263 PF13807 GNVR: G-rich domain o 50.7 44 0.00096 21.2 4.4 18 19-36 57-74 (82)
264 PF12575 DUF3753: Protein of u 50.6 39 0.00084 21.3 3.9 12 18-29 45-56 (72)
265 cd03060 GST_N_Omega_like GST_N 50.6 50 0.0011 19.9 4.6 19 89-108 3-21 (71)
266 PF04244 DPRP: Deoxyribodipyri 49.8 65 0.0014 25.0 5.9 80 92-175 34-124 (224)
267 PF11293 DUF3094: Protein of u 48.1 57 0.0012 19.3 4.3 21 14-34 24-44 (55)
268 PRK10834 vancomycin high tempe 46.8 1.4E+02 0.0031 23.5 9.9 62 83-149 44-112 (239)
269 cd01453 vWA_transcription_fact 46.7 1.2E+02 0.0025 22.4 7.8 51 108-166 127-177 (183)
270 cd01025 TOPRIM_recR TOPRIM_rec 46.6 73 0.0016 21.9 5.2 65 80-150 20-88 (112)
271 PF14427 Pput2613-deam: Pput_2 46.3 32 0.0007 23.6 3.3 42 64-106 43-88 (118)
272 PRK13617 psbV cytochrome c-550 46.1 7.5 0.00016 28.8 0.2 55 70-146 46-112 (170)
273 PF00448 SRP54: SRP54-type pro 46.0 1E+02 0.0022 23.2 6.5 60 86-154 3-63 (196)
274 cd03074 PDI_b'_Calsequestrin_C 45.0 1E+02 0.0022 21.3 6.2 59 84-149 21-79 (120)
275 cd01452 VWA_26S_proteasome_sub 44.9 1.3E+02 0.0029 22.6 6.9 39 105-147 124-162 (187)
276 PLN03098 LPA1 LOW PSII ACCUMUL 44.8 1.9E+02 0.0042 25.0 8.4 61 64-130 277-337 (453)
277 cd03059 GST_N_SspA GST_N famil 44.7 59 0.0013 19.4 4.3 19 89-108 3-21 (73)
278 COG1167 ARO8 Transcriptional r 44.3 1.3E+02 0.0029 25.8 7.6 57 121-177 200-269 (459)
279 TIGR03521 GldG gliding-associa 43.8 1.4E+02 0.003 26.5 7.7 46 83-130 47-93 (552)
280 PRK05696 fliL flagellar basal 43.6 78 0.0017 23.2 5.4 7 84-90 87-93 (170)
281 PRK01222 N-(5'-phosphoribosyl) 43.3 1.5E+02 0.0032 22.6 7.8 46 121-169 54-101 (210)
282 COG1580 FliL Flagellar basal b 43.2 32 0.0007 25.2 3.2 20 84-103 79-98 (159)
283 cd03021 DsbA_GSTK DsbA family, 43.1 78 0.0017 23.8 5.5 26 87-113 3-28 (209)
284 PRK11509 hydrogenase-1 operon 43.0 37 0.0008 24.1 3.4 58 77-142 26-87 (132)
285 cd03025 DsbA_FrnE_like DsbA fa 41.2 48 0.001 24.2 4.0 27 87-114 3-29 (193)
286 TIGR01647 ATPase-IIIA_H plasma 40.9 1.7E+02 0.0037 27.1 8.1 41 130-170 441-482 (755)
287 COG1832 Predicted CoA-binding 40.6 95 0.0021 22.3 5.1 34 120-154 17-50 (140)
288 PF09822 ABC_transp_aux: ABC-t 39.9 1.8E+02 0.0038 22.8 7.3 66 80-150 22-88 (271)
289 PF12273 RCR: Chitin synthesis 39.8 45 0.00098 23.3 3.5 19 18-36 2-20 (130)
290 PF08094 Toxin_24: Conotoxin T 39.1 17 0.00037 18.6 0.9 9 92-100 6-14 (33)
291 PF02941 FeThRed_A: Ferredoxin 38.9 9.5 0.00021 23.6 -0.1 23 64-86 22-45 (67)
292 cd05017 SIS_PGI_PMI_1 The memb 37.7 1.3E+02 0.0028 20.3 6.7 48 84-148 44-91 (119)
293 COG2237 Predicted membrane pro 37.7 61 0.0013 27.1 4.3 52 102-155 49-106 (364)
294 PF15176 LRR19-TM: Leucine-ric 37.6 1.1E+02 0.0024 20.6 4.7 14 18-31 14-27 (102)
295 cd00570 GST_N_family Glutathio 37.3 80 0.0017 17.9 4.0 19 90-109 4-22 (71)
296 PF14062 DUF4253: Domain of un 36.9 1.4E+02 0.0029 20.4 6.3 46 94-147 25-77 (111)
297 PRK11509 hydrogenase-1 operon 36.7 1.5E+02 0.0032 21.0 5.6 51 120-170 34-90 (132)
298 COG4565 CitB Response regulato 36.6 1.3E+02 0.0028 23.4 5.6 42 104-152 10-51 (224)
299 COG1908 FrhD Coenzyme F420-red 36.5 95 0.0021 21.8 4.4 29 100-130 77-105 (132)
300 cd03041 GST_N_2GST_N GST_N fam 36.4 93 0.002 19.1 4.3 20 89-109 4-23 (77)
301 PF04123 DUF373: Domain of unk 35.7 1.5E+02 0.0032 24.8 6.2 48 104-153 51-104 (344)
302 COG1580 FliL Flagellar basal b 34.6 58 0.0013 23.9 3.4 6 19-24 17-22 (159)
303 PF04278 Tic22: Tic22-like fam 34.6 90 0.0019 25.0 4.8 59 63-130 75-136 (274)
304 TIGR03171 soxL2 Rieske iron-su 34.2 27 0.00059 28.6 1.7 31 64-94 101-132 (321)
305 PRK06756 flavodoxin; Provision 33.4 1.1E+02 0.0024 21.5 4.7 14 135-148 102-115 (148)
306 COG0135 TrpF Phosphoribosylant 32.8 2.1E+02 0.0046 22.0 6.3 46 122-170 53-100 (208)
307 PRK15136 multidrug efflux syst 32.6 91 0.002 26.2 4.7 8 82-90 85-92 (390)
308 COG4093 Uncharacterized protei 32.6 1.9E+02 0.0041 23.8 6.1 10 73-82 88-97 (338)
309 PRK07718 fliL flagellar basal 32.3 69 0.0015 22.8 3.5 14 75-90 56-69 (142)
310 cd03361 TOPRIM_TopoIA_RevGyr T 32.2 2E+02 0.0044 21.1 7.7 15 121-135 118-132 (170)
311 PF05984 Cytomega_UL20A: Cytom 32.0 65 0.0014 20.9 2.9 12 78-89 62-74 (100)
312 PF13743 Thioredoxin_5: Thiore 31.9 68 0.0015 23.6 3.5 27 89-116 2-28 (176)
313 PRK10517 magnesium-transportin 31.7 2.3E+02 0.0051 26.8 7.6 40 131-170 550-590 (902)
314 cd01828 sialate_O-acetylestera 31.4 1.9E+02 0.0041 20.4 8.3 49 81-131 47-97 (169)
315 PHA02650 hypothetical protein; 31.0 1.5E+02 0.0032 19.1 4.5 9 18-26 46-54 (81)
316 cd06844 STAS Sulphate Transpor 30.7 1.5E+02 0.0033 19.1 6.2 42 83-130 39-80 (100)
317 COG1503 eRF1 Peptide chain rel 30.7 53 0.0011 28.0 2.9 35 134-168 365-399 (411)
318 COG2761 FrnE Predicted dithiol 30.3 1.8E+02 0.0039 22.6 5.6 40 86-129 7-46 (225)
319 TIGR02855 spore_yabG sporulati 30.1 1.9E+02 0.004 23.4 5.7 52 100-159 114-165 (283)
320 PF00585 Thr_dehydrat_C: C-ter 29.8 48 0.0011 21.6 2.1 70 66-157 15-85 (91)
321 PF04134 DUF393: Protein of un 29.7 44 0.00094 22.4 2.0 31 90-128 2-32 (114)
322 PRK13474 cytochrome b6-f compl 29.6 2.1E+02 0.0046 21.2 5.8 6 92-97 104-109 (178)
323 cd03040 GST_N_mPGES2 GST_N fam 29.5 85 0.0018 19.0 3.2 20 89-109 4-23 (77)
324 PF13544 N_methyl_2: Type IV p 29.1 77 0.0017 16.2 2.4 15 14-28 11-25 (31)
325 PF15050 SCIMP: SCIMP protein 29.1 86 0.0019 21.9 3.2 16 15-30 3-18 (133)
326 KOG2027|consensus 29.0 9.2 0.0002 32.2 -1.8 18 159-176 149-166 (388)
327 PRK13600 putative ribosomal pr 28.8 1.7E+02 0.0036 19.0 6.4 57 106-170 18-74 (84)
328 PF11189 DUF2973: Protein of u 28.8 1.2E+02 0.0027 18.6 3.7 16 62-77 43-58 (65)
329 KOG0202|consensus 28.6 1.4E+02 0.003 28.2 5.3 55 121-175 572-629 (972)
330 PRK01844 hypothetical protein; 28.4 1.4E+02 0.0029 18.9 3.8 10 21-30 6-15 (72)
331 PF04375 HemX: HemX; InterPro 28.4 1.2E+02 0.0027 25.3 4.8 9 102-110 131-139 (372)
332 KOG3703|consensus 28.1 2.5E+02 0.0055 25.3 6.6 21 135-155 146-166 (873)
333 PF06764 DUF1223: Protein of u 27.7 1.5E+02 0.0032 22.6 4.7 50 90-147 5-65 (202)
334 COG2143 Thioredoxin-related pr 27.5 66 0.0014 23.8 2.6 44 81-130 40-86 (182)
335 KOG1400|consensus 27.4 41 0.0009 27.9 1.7 32 79-110 270-301 (371)
336 PRK07021 fliL flagellar basal 26.8 80 0.0017 23.0 3.1 13 29-41 28-40 (162)
337 PF08394 Arc_trans_TRASH: Arch 26.8 71 0.0015 17.3 2.1 13 91-104 22-34 (37)
338 PLN02640 glucose-6-phosphate 1 26.7 4.7E+02 0.01 23.5 8.2 44 84-131 88-131 (573)
339 cd01132 F1_ATPase_alpha F1 ATP 26.4 3.4E+02 0.0074 21.8 6.9 40 138-177 151-190 (274)
340 PRK09190 hypothetical protein; 26.2 2.5E+02 0.0055 21.7 5.8 33 121-153 127-165 (220)
341 PF00388 PI-PLC-X: Phosphatidy 26.2 65 0.0014 22.7 2.5 20 70-89 125-144 (146)
342 PF06897 DUF1269: Protein of u 26.2 2.1E+02 0.0045 19.2 7.1 57 105-168 44-100 (102)
343 PHA01748 hypothetical protein 26.1 1.5E+02 0.0032 17.8 3.6 26 122-149 2-27 (60)
344 COG5353 Uncharacterized protei 26.0 83 0.0018 22.9 2.8 6 64-69 55-60 (161)
345 PF05582 Peptidase_U57: YabG p 26.0 1.9E+02 0.004 23.5 5.1 51 100-158 115-165 (287)
346 COG3008 PqiB Paraquat-inducibl 25.7 1.9E+02 0.0041 25.7 5.5 6 127-132 132-137 (553)
347 PRK10893 lipopolysaccharide ex 25.7 54 0.0012 24.7 2.0 7 84-90 81-87 (192)
348 COG1941 FrhG Coenzyme F420-red 25.7 3.4E+02 0.0073 21.5 6.5 30 83-113 2-31 (247)
349 COG3117 Uncharacterized protei 25.4 1.3E+02 0.0029 22.7 4.0 7 84-90 80-86 (188)
350 cd03022 DsbA_HCCA_Iso DsbA fam 25.3 80 0.0017 23.0 2.9 36 89-130 3-38 (192)
351 PF11303 DUF3105: Protein of u 25.1 83 0.0018 22.2 2.7 23 90-114 54-76 (130)
352 PF12261 T_hemolysin: Thermost 25.0 3E+02 0.0064 20.6 5.8 49 121-175 116-165 (179)
353 TIGR03677 rpl7ae 50S ribosomal 24.9 2.3E+02 0.0051 19.4 6.4 38 121-159 42-80 (117)
354 PF13721 SecD-TM1: SecD export 24.9 1.1E+02 0.0023 20.5 3.2 9 121-129 59-67 (101)
355 PRK04175 rpl7ae 50S ribosomal 24.9 2.4E+02 0.0052 19.5 6.4 38 121-159 46-84 (122)
356 PF01106 NifU: NifU-like domai 24.4 1E+02 0.0022 18.9 2.8 33 72-106 15-47 (68)
357 TIGR01524 ATPase-IIIB_Mg magne 24.4 4.1E+02 0.0088 25.1 7.8 41 130-170 514-555 (867)
358 COG3236 Uncharacterized protei 24.4 62 0.0013 23.4 2.0 17 84-100 13-29 (162)
359 PF07755 DUF1611: Protein of u 24.2 2.2E+02 0.0047 23.3 5.3 41 104-146 238-281 (301)
360 cd01460 vWA_midasin VWA_Midasi 24.1 1.9E+02 0.0042 23.1 4.9 67 86-160 167-248 (266)
361 PF11688 DUF3285: Protein of u 24.1 1E+02 0.0022 17.4 2.3 10 11-20 13-22 (45)
362 PRK13958 N-(5'-phosphoribosyl) 24.1 3.2E+02 0.007 20.7 7.1 33 121-156 52-84 (207)
363 cd01475 vWA_Matrilin VWA_Matri 23.9 2.7E+02 0.0058 21.1 5.7 56 107-168 125-180 (224)
364 PF13519 VWA_2: von Willebrand 23.8 2.5E+02 0.0055 19.4 6.5 33 121-153 126-158 (172)
365 PF13344 Hydrolase_6: Haloacid 23.7 1.7E+02 0.0036 19.3 3.9 28 121-149 30-57 (101)
366 PRK00509 argininosuccinate syn 23.6 4.2E+02 0.0091 22.6 7.1 53 121-173 109-168 (399)
367 PF06122 TraH: Conjugative rel 23.3 46 0.00099 27.7 1.3 23 92-115 94-116 (361)
368 cd04907 ACT_ThrD-I_2 Second of 23.1 2.1E+02 0.0045 18.1 4.4 35 121-157 41-75 (81)
369 cd03051 GST_N_GTT2_like GST_N 23.0 1.7E+02 0.0037 17.1 4.6 20 89-109 3-22 (74)
370 TIGR03190 benz_CoA_bzdN benzoy 22.7 3E+02 0.0066 23.0 6.1 56 95-156 291-352 (377)
371 PF05084 GRA6: Granule antigen 22.4 1.8E+02 0.0039 21.5 4.1 36 6-41 135-170 (215)
372 cd04501 SGNH_hydrolase_like_4 22.2 3E+02 0.0065 19.6 8.5 46 82-131 59-106 (183)
373 PF07976 Phe_hydrox_dim: Pheno 22.1 2.1E+02 0.0045 21.0 4.5 116 55-170 28-165 (169)
374 PF10813 DUF2733: Protein of u 22.0 49 0.0011 17.4 0.8 15 65-79 12-26 (32)
375 PRK05805 phosphate butyryltran 21.7 3E+02 0.0065 22.3 5.7 59 104-169 3-63 (301)
376 cd03037 GST_N_GRX2 GST_N famil 21.7 1.6E+02 0.0035 17.4 3.4 18 90-108 4-21 (71)
377 COG3011 Predicted thiol-disulf 21.5 1.6E+02 0.0034 21.1 3.5 39 83-129 6-44 (137)
378 PF01206 TusA: Sulfurtransfera 21.4 2E+02 0.0043 17.2 5.4 29 123-153 29-57 (70)
379 PF09383 NIL: NIL domain; Int 21.3 2.1E+02 0.0046 17.5 4.2 37 83-130 2-38 (76)
380 COG4698 Uncharacterized protei 21.2 1.1E+02 0.0024 23.0 2.8 36 121-156 120-157 (197)
381 PLN02539 glucose-6-phosphate 1 21.0 5.8E+02 0.013 22.5 7.7 47 82-131 15-61 (491)
382 PF09651 Cas_APE2256: CRISPR-a 20.9 1.4E+02 0.0031 21.0 3.3 48 99-149 3-52 (136)
383 COG0364 Zwf Glucose-6-phosphat 20.7 4.1E+02 0.0089 23.3 6.5 58 83-146 6-63 (483)
384 PRK04011 peptide chain release 20.7 3.6E+02 0.0077 23.0 6.2 47 99-146 5-51 (411)
385 PTZ00309 glucose-6-phosphate 1 20.5 5.9E+02 0.013 22.8 7.5 45 84-132 54-98 (542)
386 COG2165 PulG Type II secretory 20.5 1.6E+02 0.0034 20.1 3.5 18 13-30 4-21 (149)
387 PRK08931 5'-methylthioadenosin 20.3 4.7E+02 0.01 21.2 8.0 79 89-173 125-203 (289)
388 PF04800 ETC_C1_NDUFA4: ETC co 20.3 1.4E+02 0.0031 20.1 3.0 41 125-171 51-91 (101)
389 KOG1687|consensus 20.3 2.8E+02 0.0061 19.9 4.5 38 78-115 119-158 (168)
390 PF10673 DUF2487: Protein of u 20.1 2.8E+02 0.0061 19.9 4.6 46 80-130 47-94 (142)
391 PF14812 PBP1_TM: Transmembran 20.1 4.6 9.9E-05 26.1 -4.0 9 15-23 63-71 (81)
392 PF11287 DUF3088: Protein of u 20.1 3.1E+02 0.0067 18.9 5.2 30 94-130 23-52 (112)
393 COG0467 RAD55 RecA-superfamily 20.1 4.2E+02 0.0091 20.5 6.3 56 82-150 22-77 (260)
No 1
>KOG2792|consensus
Probab=100.00 E-value=9e-32 Score=205.07 Aligned_cols=169 Identities=59% Similarity=1.014 Sum_probs=145.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh---hcCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEE
Q psy17592 14 TDKFPITWKSVAVTAVTGGGILFYMWNLKKAKQNALEKERR---RNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYF 90 (183)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f 90 (183)
.+.++..|..+.+..++++++++++.+....+......+.. ..++.+.++.+|+|.|.+|+.++-.+|+|||+||||
T Consensus 67 ~r~gp~~w~~~~~t~Alg~~~~g~~~Y~~~~k~~~~e~~r~~~~~~~gk~~iGGpF~L~d~~Gk~~te~df~Gkw~LiYF 146 (280)
T KOG2792|consen 67 GRPGPFSWRSLLATFALGLGLGGALAYLKKEKARLLEKERESANRTAGKPAIGGPFSLVDHDGKRVTEKDFLGKWSLIYF 146 (280)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccCCceEEEecCCCeecccccccceEEEEe
Confidence 34467778777776666666666666666555554444444 788999999999999999999999999999999999
Q ss_pred EcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592 91 GFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 91 ~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
.+|+||+||+.|+..|.++.++++++.... +.-|+|++||++|+++.+++|++++++...+|+|..+++.+++++|.||
T Consensus 147 GFThCPDICPdELeKm~~~Vd~i~~~~~~~-~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVY 225 (280)
T KOG2792|consen 147 GFTHCPDICPDELEKMSAVVDEIEAKPGLP-PVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVY 225 (280)
T ss_pred cccCCCCcChHHHHHHHHHHHHHhccCCCC-ccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEe
Confidence 999999999999999999999998875233 3479999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCC
Q psy17592 171 FSAGPKDKDSDYI 183 (183)
Q Consensus 171 ~~~~~~~~~~~~~ 183 (183)
|+..+.+++.|||
T Consensus 226 fs~gp~d~~~DYl 238 (280)
T KOG2792|consen 226 FSTGPKDEDQDYL 238 (280)
T ss_pred eccCCCCCCCCee
Confidence 9998888899997
No 2
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.95 E-value=6.3e-28 Score=180.01 Aligned_cols=117 Identities=42% Similarity=0.871 Sum_probs=106.7
Q ss_pred CcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592 59 KVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL 138 (183)
Q Consensus 59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~ 138 (183)
.....|+|+|+|++|+++++++++||++||+|.+|.||.+|+..+..|.++++++.++ +.++++|+||+||++|+++.
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~--~~~v~~v~ISvDP~~DTp~~ 105 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE--GKDVQFVFISVDPERDTPEV 105 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT--TTTEEEEEEESSTTTC-HHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc--cCceEEEEEEeCCCCCCHHH
Confidence 4445689999999999999999999999999999999999999999999999999876 56899999999999999999
Q ss_pred HHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCCCC
Q psy17592 139 VGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177 (183)
Q Consensus 139 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~ 177 (183)
+++|++.++++|..++++.+++.++++.|+++|.+.+.+
T Consensus 106 L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~ 144 (174)
T PF02630_consen 106 LKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPED 144 (174)
T ss_dssp HHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESS
T ss_pred HHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccc
Confidence 999999999999999999999999999999999987653
No 3
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.95 E-value=8.8e-27 Score=177.94 Aligned_cols=117 Identities=47% Similarity=0.957 Sum_probs=107.9
Q ss_pred CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhh-CCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592 64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKID-GQPNVPNITPIFISVDPERDTPELVGKY 142 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~-~~~~~~~v~~v~Is~dp~~d~~~~~~~~ 142 (183)
.+|+|+|++|+.+++.+++||++||+|.+|+||.+|+.++..|.++++++. .. +.++++++||+||++|+++.+++|
T Consensus 48 g~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~--~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 48 GDFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGE--GDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred CceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcccc--CCCEEEEEEEECCCCCCHHHHHHH
Confidence 389999999999999999999999999999999999999999999999998 44 779999999999999999999999
Q ss_pred HH-HhCCCeEEecCCHHHHHHHHhhcCeeEeeCCCCCCCCC
Q psy17592 143 VK-EFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDY 182 (183)
Q Consensus 143 ~~-~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~~~ 182 (183)
++ .+++.|.+++|+.+.+.+++++|+|+|++.+.+...+|
T Consensus 126 ~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y 166 (207)
T COG1999 126 AELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNY 166 (207)
T ss_pred hcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCc
Confidence 99 77899999999999999999999999987765543344
No 4
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.91 E-value=9.2e-24 Score=152.03 Aligned_cols=112 Identities=46% Similarity=0.895 Sum_probs=102.1
Q ss_pred CCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592 63 GGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142 (183)
Q Consensus 63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~ 142 (183)
.|+|++.|.+|+.+++++++||++||+||++||+++|..+++.|+++++++++++ .+++++++|+.|+.+|+++.+++|
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~-~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADG-GDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhh-cCceEEEEEEECCCCCCHHHHHHH
Confidence 4899999999999999999999999999999999779999999999999997641 036999999999988899999999
Q ss_pred HHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCC
Q psy17592 143 VKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGP 175 (183)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~ 175 (183)
+++++.+|+++.++.+....++++||+.+...+
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~ 113 (142)
T cd02968 81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVP 113 (142)
T ss_pred HHHhCCCcEEEECCHHHHHHHHHHhcEEEEecC
Confidence 999999999999988778889999999988764
No 5
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.86 E-value=7e-21 Score=141.40 Aligned_cols=104 Identities=23% Similarity=0.306 Sum_probs=91.9
Q ss_pred cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592 56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135 (183)
Q Consensus 56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~ 135 (183)
.+..+...|+|++.+.+|+.+++++++||+++|+||++||+. |+.+++.|.++++++.+. ++++++|+.| ++
T Consensus 34 ~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~-C~~~~~~l~~~~~~~~~~----~~~vi~i~~d---~~ 105 (173)
T PRK03147 34 KVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKP-CEKEMPYMNELYPKYKEK----GVEIIAVNVD---ET 105 (173)
T ss_pred ccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhhcC----CeEEEEEEcC---CC
Confidence 355666779999999999999999999999999999999997 999999999999999865 7999999998 57
Q ss_pred HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592 136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
.+.+++|.++++.+|+.+.+... .+.+.||+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~v~ 137 (173)
T PRK03147 106 ELAVKNFVNRYGLTFPVAIDKGR---QVIDAYGVG 137 (173)
T ss_pred HHHHHHHHHHhCCCceEEECCcc---hHHHHcCCC
Confidence 78999999999999998876544 477888865
No 6
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.85 E-value=5.5e-21 Score=145.44 Aligned_cols=89 Identities=9% Similarity=0.075 Sum_probs=80.9
Q ss_pred ccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC----CCCCcH
Q psy17592 61 AIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD----PERDTP 136 (183)
Q Consensus 61 ~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d----p~~d~~ 136 (183)
...|+|+++|.+|+.+++++++||++||+||+||||+ |..++|.|++++++++++ +++||+|+.| ++.|++
T Consensus 17 ~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~-C~~e~p~L~~l~~~~~~~----g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 17 KSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGL-TKKHVDQMNRLHSVFNPL----GLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCC-hHHHHHHHHHHHHHHhcC----ceEEEEecchhccCCCCCCH
Confidence 3459999999999999999999999999999999998 999999999999999866 7999999975 234788
Q ss_pred HHHHHHHHHhCCCeEEec
Q psy17592 137 ELVGKYVKEFSPKFIGLT 154 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~ 154 (183)
+.+++|+++++.+|+.+.
T Consensus 92 e~~~~f~~~~~~~fpvl~ 109 (199)
T PTZ00056 92 KDIRKFNDKNKIKYNFFE 109 (199)
T ss_pred HHHHHHHHHcCCCceeee
Confidence 999999999999999864
No 7
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.85 E-value=8.9e-21 Score=138.51 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=78.5
Q ss_pred CCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcHHH
Q psy17592 63 GGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTPEL 138 (183)
Q Consensus 63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~~~ 138 (183)
.|+|+++|.+|+.+++++++||++||+||++||| |..++|.|++++++++++ ++++++|+.|. +.++++.
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~--C~~e~p~l~~l~~~~~~~----~~~vv~v~~~~~~~~~~~~~~~ 75 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG--FTPQYEGLEALYEKYKDR----GLVVLGFPCNQFGGQEPGSNEE 75 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC--chHHHHHHHHHHHHhcCC----CEEEEEeccCccccCCCCCHHH
Confidence 3899999999999999999999999999999998 999999999999999765 79999999864 2367899
Q ss_pred HHHHHHH-hCCCeEEecC
Q psy17592 139 VGKYVKE-FSPKFIGLTG 155 (183)
Q Consensus 139 ~~~~~~~-~~~~~~~l~~ 155 (183)
+++|+++ ++.+|+.+.+
T Consensus 76 ~~~f~~~~~~~~fp~~~d 93 (152)
T cd00340 76 IKEFCETNYGVTFPMFAK 93 (152)
T ss_pred HHHHHHHhcCCCceeeee
Confidence 9999997 7999998853
No 8
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.84 E-value=5.9e-21 Score=143.81 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=79.4
Q ss_pred CcccCCCeEEEcCC--CCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592 59 KVAIGGKFELVDCN--NKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135 (183)
Q Consensus 59 ~~~~~p~f~l~d~~--G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~ 135 (183)
.+...|+|++.|.+ |+.++++++ +||++||+||++|||+ |+.++|.|.+++++ ++++++|+.| |+
T Consensus 41 ~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~-C~~e~p~l~~l~~~--------~~~vi~v~~~---~~ 108 (185)
T PRK15412 41 IGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPT-CRAEHQYLNQLSAQ--------GIRVVGMNYK---DD 108 (185)
T ss_pred cCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHc--------CCEEEEEECC---CC
Confidence 34556999999998 477777766 7999999999999998 99999999988642 6899999987 67
Q ss_pred HHHHHHHHHHhCCCeEE-ecCCHHHHHHHHhhcCeeE
Q psy17592 136 PELVGKYVKEFSPKFIG-LTGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~gv~~ 171 (183)
++.+++|+++++.+|+. +.++.. .++++||+.-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~gv~~ 142 (185)
T PRK15412 109 RQKAISWLKELGNPYALSLFDGDG---MLGLDLGVYG 142 (185)
T ss_pred HHHHHHHHHHcCCCCceEEEcCCc---cHHHhcCCCc
Confidence 78999999999999875 444433 3677888653
No 9
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.84 E-value=2e-20 Score=135.39 Aligned_cols=102 Identities=26% Similarity=0.410 Sum_probs=87.6
Q ss_pred cccCCCeEEEc--CCCCeeecCccCCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592 60 VAIGGKFELVD--CNNKPVKSEDFLGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP 136 (183)
Q Consensus 60 ~~~~p~f~l~d--~~G~~v~l~~~~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~ 136 (183)
+..+|+|++++ .+|+.+++++++||++||+||++ |||+ |..++|.|.+++++++++ ++.+++|+.+. +.
T Consensus 3 G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~-C~~~~p~l~~l~~~~~~~----~v~~v~v~~~~---~~ 74 (146)
T PF08534_consen 3 GDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPP-CRKELPYLNELQEKYKDK----GVDVVGVSSDD---DP 74 (146)
T ss_dssp TSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHH-HHHHHHHHHHHHHHHHTT----TCEEEEEEESS---SH
T ss_pred CCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCc-chhhhhhHHhhhhhhccC----ceEEEEecccC---CH
Confidence 45569999966 99999999999999999999999 9998 999999999999998876 89999999983 33
Q ss_pred HHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592 137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA 173 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~ 173 (183)
. +++|+++++.+|+.+.++... ++++||+.+..
T Consensus 75 ~-~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~~~ 107 (146)
T PF08534_consen 75 P-VREFLKKYGINFPVLSDPDGA---LAKALGVTIME 107 (146)
T ss_dssp H-HHHHHHHTTTTSEEEEETTSH---HHHHTTCEEEC
T ss_pred H-HHHHHHhhCCCceEEechHHH---HHHHhCCcccc
Confidence 4 999999999999999885444 89999987553
No 10
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.84 E-value=2.1e-20 Score=136.68 Aligned_cols=105 Identities=22% Similarity=0.342 Sum_probs=91.6
Q ss_pred CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592 57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135 (183)
Q Consensus 57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~ 135 (183)
+..+..+|+|+++|.+|+.+++++++||++||+||++ |||. |+.+++.|++++++++++ ++++|+|+.| +
T Consensus 4 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~-C~~~~~~l~~~~~~~~~~----~v~vi~Is~d----~ 74 (154)
T PRK09437 4 LKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPG-CTVQACGLRDNMDELKKA----GVVVLGISTD----K 74 (154)
T ss_pred CCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHC----CCEEEEEcCC----C
Confidence 3445667999999999999999999999999999997 5665 999999999999999866 7999999987 5
Q ss_pred HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592 136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA 173 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~ 173 (183)
++.+++|+++++.+|+.+.++.. .++++||+.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~l~D~~~---~~~~~~gv~~~~ 109 (154)
T PRK09437 75 PEKLSRFAEKELLNFTLLSDEDH---QVAEQFGVWGEK 109 (154)
T ss_pred HHHHHHHHHHhCCCCeEEECCCc---hHHHHhCCCccc
Confidence 79999999999999999987653 488999987654
No 11
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.84 E-value=1.7e-20 Score=135.45 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=86.4
Q ss_pred cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCC-CCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592 60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTH-CPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL 138 (183)
Q Consensus 60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~-C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~ 138 (183)
+..+|+|++.|.+|+.+++++++||++||+||++| ||+ |..+++.|+++++++. ++.+|+|+.| +++.
T Consensus 3 G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~-C~~e~~~l~~~~~~~~------~~~vi~Is~d----~~~~ 71 (143)
T cd03014 3 GDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPV-CATQTKRFNKEAAKLD------NTVVLTISAD----LPFA 71 (143)
T ss_pred CCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCc-CHHHHHHHHHHHHhcC------CCEEEEEECC----CHHH
Confidence 45569999999999999999999999999999999 586 9999999999999862 6899999987 4678
Q ss_pred HHHHHHHhCC-CeEEecCCHHHHHHHHhhcCeeEee
Q psy17592 139 VGKYVKEFSP-KFIGLTGTVEQVAAACKAYRVYFSA 173 (183)
Q Consensus 139 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~~ 173 (183)
+++|.++++. +++.+.+.. ...++++||++...
T Consensus 72 ~~~~~~~~~~~~~~~l~D~~--~~~~~~~~gv~~~~ 105 (143)
T cd03014 72 QKRWCGAEGVDNVTTLSDFR--DHSFGKAYGVLIKD 105 (143)
T ss_pred HHHHHHhcCCCCceEeecCc--ccHHHHHhCCeecc
Confidence 8999999985 788887753 24589999998653
No 12
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.84 E-value=1.9e-20 Score=138.89 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=87.5
Q ss_pred CCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCC-CCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592 58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTH-CPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP 136 (183)
Q Consensus 58 ~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~-C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~ 136 (183)
..+..+|+|++.|.+|+.+++++++||++||+||++| ||+ |..|++.|+++++++. ++++++||.| ++
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~-C~~e~~~l~~~~~~~~------~~~vv~vs~D----~~ 87 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGV-CATSVRKFNQEAAELD------NTVVLCISAD----LP 87 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCc-cHHHHHHHHHHHHHcC------CcEEEEEeCC----CH
Confidence 4456679999999999999999999999999999999 887 9999999999998862 6999999987 56
Q ss_pred HHHHHHHHHhCCC-eEEecCCHHHHHHHHhhcCeeEee
Q psy17592 137 ELVGKYVKEFSPK-FIGLTGTVEQVAAACKAYRVYFSA 173 (183)
Q Consensus 137 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~gv~~~~ 173 (183)
+.+++|+++++.. ++.+.+... ..++++||+...+
T Consensus 88 ~~~~~f~~~~~~~~~~~lsD~~~--~~~~~~~gv~~~~ 123 (167)
T PRK00522 88 FAQKRFCGAEGLENVITLSDFRD--HSFGKAYGVAIAE 123 (167)
T ss_pred HHHHHHHHhCCCCCceEeecCCc--cHHHHHhCCeecc
Confidence 7889999999976 677776432 2489999987654
No 13
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.84 E-value=8.6e-20 Score=137.92 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=79.3
Q ss_pred CCCcccCCCeEEEcCCCCeeecC--ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592 57 LGKVAIGGKFELVDCNNKPVKSE--DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD 134 (183)
Q Consensus 57 ~~~~~~~p~f~l~d~~G~~v~l~--~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d 134 (183)
+..+..+|+|+++|.+|+.++++ +++||+++|+||++|||+ |+.++|.+++++++. ++.+++|+. |
T Consensus 46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~-C~~~lp~l~~~~~~~-------~~~vv~Is~----~ 113 (189)
T TIGR02661 46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPV-CDKLFPIIKSIARAE-------ETDVVMISD----G 113 (189)
T ss_pred CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChh-HHHHHHHHHHHHHhc-------CCcEEEEeC----C
Confidence 34566679999999999999994 579999999999999997 999999999988643 467888884 4
Q ss_pred cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592 135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
+++.+++|+++++.++..+.. . .++++.||+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~-~---~~i~~~y~v~ 145 (189)
T TIGR02661 114 TPAEHRRFLKDHELGGERYVV-S---AEIGMAFQVG 145 (189)
T ss_pred CHHHHHHHHHhcCCCcceeec-h---hHHHHhccCC
Confidence 678999999999987654432 2 3477888864
No 14
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.83 E-value=3.5e-20 Score=130.20 Aligned_cols=100 Identities=27% Similarity=0.424 Sum_probs=90.8
Q ss_pred cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592 60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL 138 (183)
Q Consensus 60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~ 138 (183)
+..+|+|++++.+|+.+++++++||++||+||++ |||. |..+++.|++++++++++ ++++++|+.| +++.
T Consensus 2 G~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~-c~~~l~~l~~~~~~~~~~----~~~vi~is~d----~~~~ 72 (124)
T PF00578_consen 2 GDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPF-CQAELPELNELYKKYKDK----GVQVIGISTD----DPEE 72 (124)
T ss_dssp TSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHH-HHHHHHHHHHHHHHHHTT----TEEEEEEESS----SHHH
T ss_pred cCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccc-cccchhHHHHHhhhhccc----eEEeeecccc----cccc
Confidence 3456999999999999999999999999999999 9997 999999999999999976 8999999987 6679
Q ss_pred HHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592 139 VGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 139 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~ 171 (183)
+++|.++++.+|+.+.+.... +++.||+..
T Consensus 73 ~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~ 102 (124)
T PF00578_consen 73 IKQFLEEYGLPFPVLSDPDGE---LAKAFGIED 102 (124)
T ss_dssp HHHHHHHHTCSSEEEEETTSH---HHHHTTCEE
T ss_pred hhhhhhhhccccccccCcchH---HHHHcCCcc
Confidence 999999999999999885544 889999874
No 15
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.83 E-value=2.6e-20 Score=135.07 Aligned_cols=105 Identities=25% Similarity=0.305 Sum_probs=90.9
Q ss_pred CcccCCCeEEEcCCCCeeecCccCC-CEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592 59 KVAIGGKFELVDCNNKPVKSEDFLG-KWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP 136 (183)
Q Consensus 59 ~~~~~p~f~l~d~~G~~v~l~~~~g-k~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~ 136 (183)
.+...|+|++.+.+|+.+++++++| |+++|+|| ++|||. |..++|.|++++++++++ ++++++|+.| ++
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~-C~~~~~~l~~~~~~~~~~----~v~vi~vs~d----~~ 73 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPV-CTKELCALRDSLELFEAA----GAEVLGISVD----SP 73 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHHHHhC----CCEEEEecCC----CH
Confidence 3556699999999999999999999 99999888 999997 999999999999999865 7999999987 57
Q ss_pred HHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592 137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA 173 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~ 173 (183)
+.+++|+++++.+|+.+.+... ...+++.||+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~g~~~~~ 109 (149)
T cd03018 74 FSLRAWAEENGLTFPLLSDFWP-HGEVAKAYGVFDED 109 (149)
T ss_pred HHHHHHHHhcCCCceEecCCCc-hhHHHHHhCCcccc
Confidence 8899999999999999887541 24588999988643
No 16
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.82 E-value=5.1e-20 Score=133.07 Aligned_cols=93 Identities=14% Similarity=0.240 Sum_probs=75.1
Q ss_pred CeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCC---CCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592 74 KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP---NVPNITPIFISVDPERDTPELVGKYVKEFSPKF 150 (183)
Q Consensus 74 ~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~---~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~ 150 (183)
+.+++++++||+++|+|||||||+ |+.++|.|.+++++++++. ..+++++|+|+.| ++.+.+++|+++++..|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCpp-Cr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D---~~~~~~~~f~~~~~~~~ 91 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQ-CQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD---QSEQQQESFLKDMPKKW 91 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChh-HHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC---CCHHHHHHHHHHCCCCc
Confidence 346788999999999999999998 9999999999999887531 1347999999998 56788999999999888
Q ss_pred EEecCCHHHHHHHHhhcCee
Q psy17592 151 IGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 151 ~~l~~~~~~~~~~~~~~gv~ 170 (183)
+.+.-..+.-..+++.||+.
T Consensus 92 ~~~p~~~~~~~~l~~~y~v~ 111 (146)
T cd03008 92 LFLPFEDEFRRELEAQFSVE 111 (146)
T ss_pred eeecccchHHHHHHHHcCCC
Confidence 66533333334688889874
No 17
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.82 E-value=9.3e-20 Score=130.81 Aligned_cols=100 Identities=23% Similarity=0.310 Sum_probs=89.5
Q ss_pred cCCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592 62 IGGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG 140 (183)
Q Consensus 62 ~~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~ 140 (183)
.+|+|+++|.+|+.+++++++||++||+|| ++|||. |..+++.|+++++++.++ ++++|+|+.| +++.++
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~~----~~~vv~is~d----~~~~~~ 72 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPG-CTKEACDFRDLYEEFKAL----GAVVIGVSPD----SVESHA 72 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHHC----CCEEEEEcCC----CHHHHH
Confidence 359999999999999999999999999999 588996 999999999999999865 7999999987 678999
Q ss_pred HHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592 141 KYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA 173 (183)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~ 173 (183)
+|+++++.+|+.+.+... .++++||+....
T Consensus 73 ~~~~~~~~~~~~l~D~~~---~~~~~~gv~~~~ 102 (140)
T cd03017 73 KFAEKYGLPFPLLSDPDG---KLAKAYGVWGEK 102 (140)
T ss_pred HHHHHhCCCceEEECCcc---HHHHHhCCcccc
Confidence 999999999999987654 488999988764
No 18
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.81 E-value=1.8e-19 Score=133.99 Aligned_cols=102 Identities=23% Similarity=0.328 Sum_probs=91.5
Q ss_pred cCCCeEEEcCCCCeeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC----CcH
Q psy17592 62 IGGKFELVDCNNKPVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER----DTP 136 (183)
Q Consensus 62 ~~p~f~l~d~~G~~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~----d~~ 136 (183)
..|+|++.|.+|+.++++++ +||++||+||++|||. |..+++.|.++++++.++ ++++|+|++|+.. |++
T Consensus 3 ~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~-c~~~~~~l~~l~~~~~~~----~v~~v~is~d~~~~~~~d~~ 77 (171)
T cd02969 3 PAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPY-VKAIEDRLNRLAKEYGAK----GVAVVAINSNDIEAYPEDSP 77 (171)
T ss_pred cCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHHhhC----CeEEEEEecCccccccccCH
Confidence 45999999999999999998 8999999999999997 999999999999999765 7999999999743 689
Q ss_pred HHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592 137 ELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~ 171 (183)
+.+++|+++++.+|+.+.+.... +++.||+..
T Consensus 78 ~~~~~~~~~~~~~~~~l~D~~~~---~~~~~~v~~ 109 (171)
T cd02969 78 ENMKAKAKEHGYPFPYLLDETQE---VAKAYGAAC 109 (171)
T ss_pred HHHHHHHHHCCCCceEEECCchH---HHHHcCCCc
Confidence 99999999999999999887654 788888754
No 19
>PLN02412 probable glutathione peroxidase
Probab=99.81 E-value=1.7e-19 Score=133.79 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=78.0
Q ss_pred cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC----CCc
Q psy17592 60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE----RDT 135 (183)
Q Consensus 60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~----~d~ 135 (183)
+..+|+|+++|.+|+.+++++++||++||+||++|||+ |..++|.|++++++++++ ++.|++|+.|+. .++
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~-c~~e~~~l~~l~~~~~~~----g~~vvgv~~~~~~~~~~~~ 80 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGL-TDSNYKELNVLYEKYKEQ----GFEILAFPCNQFLGQEPGS 80 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCC-hHHHHHHHHHHHHHHhhC----CcEEEEecccccccCCCCC
Confidence 34569999999999999999999999999999999998 999999999999999876 799999998742 245
Q ss_pred HHHHHH-HHHHhCCCeEEec
Q psy17592 136 PELVGK-YVKEFSPKFIGLT 154 (183)
Q Consensus 136 ~~~~~~-~~~~~~~~~~~l~ 154 (183)
.+.+.+ |.++++.+|+.+.
T Consensus 81 ~~~~~~~~~~~~~~~fpvl~ 100 (167)
T PLN02412 81 NEEIQQTVCTRFKAEFPIFD 100 (167)
T ss_pred HHHHHHHHHHccCCCCceEe
Confidence 556555 4688999999875
No 20
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.81 E-value=8.8e-20 Score=141.49 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=79.7
Q ss_pred cccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCc
Q psy17592 60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDT 135 (183)
Q Consensus 60 ~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~ 135 (183)
+..+|+|+++|.+|+.+++++++||++||+||++|||+ |..++|.|++++++++++ +++||+|+.|. +.++
T Consensus 76 g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~-c~~e~p~L~~L~~~~~~~----Gv~VIgV~~d~~~~~e~~s 150 (236)
T PLN02399 76 EKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGL-TSSNYSELSHLYEKYKTQ----GFEILAFPCNQFGGQEPGS 150 (236)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcc-hHHHHHHHHHHHHHHhcC----CcEEEEEecccccccCCCC
Confidence 44569999999999999999999999999999999998 999999999999999866 79999999863 2357
Q ss_pred HHHHHHHH-HHhCCCeEEec
Q psy17592 136 PELVGKYV-KEFSPKFIGLT 154 (183)
Q Consensus 136 ~~~~~~~~-~~~~~~~~~l~ 154 (183)
.+.+++|+ ++++.+|+.+.
T Consensus 151 ~~ei~~f~~~~~g~~fPvl~ 170 (236)
T PLN02399 151 NPEIKQFACTRFKAEFPIFD 170 (236)
T ss_pred HHHHHHHHHHhcCCCCcccc
Confidence 78899998 67899998864
No 21
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.80 E-value=1.9e-19 Score=131.53 Aligned_cols=86 Identities=14% Similarity=0.291 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC----CCCCcHHHH
Q psy17592 64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD----PERDTPELV 139 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d----p~~d~~~~~ 139 (183)
-+|++.|.+|+.+++++++||++||+||++|||+ |..++|.|++++++++++ ++.+++|+.+ .+.|+++.+
T Consensus 3 ~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~-c~~~~~~l~~l~~~~~~~----~~~v~~i~~~~~~~~~~d~~~~~ 77 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKYRGKVSLVVNVASECGF-TDQNYRALQELHRELGPS----HFNVLAFPCNQFGESEPDSSKEI 77 (153)
T ss_pred ccceeECCCCCEecHHHhCCCEEEEEEeCCCCCc-hhhhHHHHHHHHHHHhhC----CeEEEEEeccccccCCCCCHHHH
Confidence 3799999999999999999999999999999998 999999999999999866 8999999852 123678999
Q ss_pred HHHHHH-hCCCeEEec
Q psy17592 140 GKYVKE-FSPKFIGLT 154 (183)
Q Consensus 140 ~~~~~~-~~~~~~~l~ 154 (183)
++|+++ ++.+|+.+.
T Consensus 78 ~~f~~~~~~~~fp~~~ 93 (153)
T TIGR02540 78 ESFARRNYGVTFPMFS 93 (153)
T ss_pred HHHHHHhcCCCCCccc
Confidence 999986 899998875
No 22
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.80 E-value=2.1e-19 Score=135.58 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=84.3
Q ss_pred cccCCCeEEEc-CCCC--eeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592 60 VAIGGKFELVD-CNNK--PVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135 (183)
Q Consensus 60 ~~~~p~f~l~d-~~G~--~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~ 135 (183)
+..+|+|++.+ .+|+ .+++++++||++||+|| ++|||. |..|++.|+++++++.++ ++++++||.| +
T Consensus 5 G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~-C~~el~~l~~~~~~~~~~----gv~vi~VS~D----~ 75 (187)
T TIGR03137 5 NTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFV-CPTELEDLADKYAELKKL----GVEVYSVSTD----T 75 (187)
T ss_pred CCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCc-CHHHHHHHHHHHHHHHhc----CCcEEEEeCC----C
Confidence 45569999998 6787 67888999999999999 999997 999999999999999865 8999999988 4
Q ss_pred HHHHHHHHHHh----CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592 136 PELVGKYVKEF----SPKFIGLTGTVEQVAAACKAYRVYFS 172 (183)
Q Consensus 136 ~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~gv~~~ 172 (183)
++.+++|.+.. +.+|+.+.+.. ..+++.||+++.
T Consensus 76 ~~~~~~~~~~~~~~~~l~fpllsD~~---~~~a~~~gv~~~ 113 (187)
T TIGR03137 76 HFVHKAWHDTSEAIGKITYPMLGDPT---GVLTRNFGVLIE 113 (187)
T ss_pred HHHHHHHHhhhhhccCcceeEEECCc---cHHHHHhCCccc
Confidence 56667776654 57888887764 458999999764
No 23
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.80 E-value=5.2e-19 Score=126.83 Aligned_cols=99 Identities=23% Similarity=0.349 Sum_probs=88.9
Q ss_pred CCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592 63 GGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK 141 (183)
Q Consensus 63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~ 141 (183)
.|+|++.|.+|+.+++++++||++||+|| ++||+. |..+++.|.+++++++.. ++.+++|+.| +++.+++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~-C~~~~~~l~~~~~~~~~~----~~~~i~is~d----~~~~~~~ 72 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPV-CTTELCAFRDLAEEFAKG----GAEVLGVSVD----SPFSHKA 72 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC----CCEEEEEeCC----CHHHHHH
Confidence 48999999999999999999999999999 789997 999999999999999654 7999999987 5788999
Q ss_pred HHHHh-CCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592 142 YVKEF-SPKFIGLTGTVEQVAAACKAYRVYFSA 173 (183)
Q Consensus 142 ~~~~~-~~~~~~l~~~~~~~~~~~~~~gv~~~~ 173 (183)
|.+++ +.+|+.+.+... .+++.||+++..
T Consensus 73 ~~~~~~~~~~~~l~D~~~---~~~~~~g~~~~~ 102 (140)
T cd02971 73 WAEKEGGLNFPLLSDPDG---EFAKAYGVLIEK 102 (140)
T ss_pred HHhcccCCCceEEECCCh---HHHHHcCCcccc
Confidence 99999 899999987654 588999988765
No 24
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.79 E-value=6.6e-19 Score=131.23 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=84.9
Q ss_pred cccCCCeEEEcCCC----CeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592 60 VAIGGKFELVDCNN----KPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD 134 (183)
Q Consensus 60 ~~~~p~f~l~d~~G----~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d 134 (183)
+..+|+|++.+.+| +.+++++++||++||+|| ++|||. |..+++.|+++++++.++ ++++++||.|+
T Consensus 2 G~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~-C~~~l~~l~~~~~~~~~~----~v~vv~Is~d~--- 73 (173)
T cd03015 2 GKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFV-CPTEIIAFSDRYEEFKKL----NAEVLGVSTDS--- 73 (173)
T ss_pred CCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCc-CHHHHHHHHHHHHHHHHC----CCEEEEEecCC---
Confidence 34569999999887 789999999999999999 899997 999999999999999865 79999999984
Q ss_pred cHHHHHHHHHHh-------CCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592 135 TPELVGKYVKEF-------SPKFIGLTGTVEQVAAACKAYRVYFSA 173 (183)
Q Consensus 135 ~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~~ 173 (183)
.+..+.|.+.+ +.+|+.+.+.... +++.||+++..
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~---~~~~~gv~~~~ 115 (173)
T cd03015 74 -HFSHLAWRNTPRKEGGLGKINFPLLADPKKK---ISRDYGVLDEE 115 (173)
T ss_pred -HHHHHHHHHhhhhhCCccCcceeEEECCchh---HHHHhCCcccc
Confidence 34555666653 4789999876544 88999987554
No 25
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.4e-18 Score=125.96 Aligned_cols=106 Identities=23% Similarity=0.307 Sum_probs=94.6
Q ss_pred CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592 57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135 (183)
Q Consensus 57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~ 135 (183)
+..+..+|+|+|.+++|+.++|++++||+|||+|+ ..++|. |..|+..+++.+.++++. +.++++||.| +
T Consensus 4 l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~Tpg-CT~Ea~~Frd~~~ef~~~----~a~V~GIS~D----s 74 (157)
T COG1225 4 LKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPG-CTTEACDFRDLLEEFEKL----GAVVLGISPD----S 74 (157)
T ss_pred CCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCc-chHHHHHHHHHHHHHHhC----CCEEEEEeCC----C
Confidence 44567779999999999999999999999999988 456664 999999999999999876 8999999987 7
Q ss_pred HHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592 136 PELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAG 174 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~ 174 (183)
++.+++|.++++.+|+.|+++... ++++||+.-.+.
T Consensus 75 ~~~~~~F~~k~~L~f~LLSD~~~~---v~~~ygv~~~k~ 110 (157)
T COG1225 75 PKSHKKFAEKHGLTFPLLSDEDGE---VAEAYGVWGEKK 110 (157)
T ss_pred HHHHHHHHHHhCCCceeeECCcHH---HHHHhCcccccc
Confidence 899999999999999999988776 999999987654
No 26
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.78 E-value=1e-18 Score=124.62 Aligned_cols=94 Identities=22% Similarity=0.349 Sum_probs=77.2
Q ss_pred EcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC
Q psy17592 69 VDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP 148 (183)
Q Consensus 69 ~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~ 148 (183)
.|.+ +++++++++||++||+||++||++ |+.++|.|++++++++++ ..++++++|++| ++.+.+++|+++++
T Consensus 4 ~~~~-~~v~l~~~~Gk~vll~F~atwC~~-C~~~~p~l~~l~~~~~~~--~~~v~vi~Vs~d---~~~~~~~~~~~~~~- 75 (132)
T cd02964 4 LDGE-GVVPVSALEGKTVGLYFSASWCPP-CRAFTPKLVEFYEKLKEE--GKNFEIVFVSRD---RSEESFNEYFSEMP- 75 (132)
T ss_pred ccCC-ccccHHHhCCCEEEEEEECCCCch-HHHHHHHHHHHHHHHhhc--CCCeEEEEEecC---CCHHHHHHHHhcCC-
Confidence 3444 589999999999999999999998 999999999999998754 247999999999 46789999999998
Q ss_pred CeEEecCCH-HHHHHHHhhcCee
Q psy17592 149 KFIGLTGTV-EQVAAACKAYRVY 170 (183)
Q Consensus 149 ~~~~l~~~~-~~~~~~~~~~gv~ 170 (183)
.|..+.... .....+++.||+.
T Consensus 76 ~~~~~~~~d~~~~~~~~~~~~v~ 98 (132)
T cd02964 76 PWLAVPFEDEELRELLEKQFKVE 98 (132)
T ss_pred CeEeeccCcHHHHHHHHHHcCCC
Confidence 777765433 3445678888864
No 27
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.78 E-value=4.8e-19 Score=125.32 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=81.5
Q ss_pred cCCCeEEEcCCC--CeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHH
Q psy17592 62 IGGKFELVDCNN--KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELV 139 (183)
Q Consensus 62 ~~p~f~l~d~~G--~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~ 139 (183)
.+|+|+++|.+| +.+++++++||+++|+||++|||+ |..++|.|+++.+++ ++++++|+.| ++.+.+
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~-C~~~~~~l~~l~~~~-------~~~vv~v~~~---~~~~~~ 70 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAP-CREEHPVLMALARQG-------RVPIYGINYK---DNPENA 70 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHhc-------CcEEEEEECC---CCHHHH
Confidence 359999999998 889999999999999999999998 999999999997753 4899999987 688999
Q ss_pred HHHHHHhCCCeEEe-cCCHHHHHHHHhhcCeeE
Q psy17592 140 GKYVKEFSPKFIGL-TGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 140 ~~~~~~~~~~~~~l-~~~~~~~~~~~~~~gv~~ 171 (183)
++|+++++.+|+.+ .+.. ..+++.||++.
T Consensus 71 ~~~~~~~~~~~~~~~~D~~---~~~~~~~~v~~ 100 (127)
T cd03010 71 LAWLARHGNPYAAVGFDPD---GRVGIDLGVYG 100 (127)
T ss_pred HHHHHhcCCCCceEEECCc---chHHHhcCCCC
Confidence 99999999988654 3433 34788888754
No 28
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.78 E-value=3.2e-18 Score=118.70 Aligned_cols=92 Identities=21% Similarity=0.348 Sum_probs=77.7
Q ss_pred CCeEEEcCCCCeeecCccC-CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592 64 GKFELVDCNNKPVKSEDFL-GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~~~-gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~ 142 (183)
|+|+++|.+|+.+++++++ ||+++|+||++||++ |+.++|.++++++++.+ ++.++.++ | ++.+..++|
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~-C~~~~p~l~~~~~~~~~-----~~~vi~v~-~---~~~~~~~~~ 70 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPV-CKKLLPVIRSIARAEAD-----WLDVVLAS-D---GEKAEHQRF 70 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcc-hHhHhHHHHHHHHHhcC-----CcEEEEEe-C---CCHHHHHHH
Confidence 7899999999999999997 999999999999997 99999999999887632 58888775 4 467899999
Q ss_pred HHHhCC-CeEEecCCHHHHHHHHhhcCee
Q psy17592 143 VKEFSP-KFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 143 ~~~~~~-~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
+++++. .++.+.. .++++.||+.
T Consensus 71 ~~~~~~~~~p~~~~-----~~~~~~~~~~ 94 (114)
T cd02967 71 LKKHGLEAFPYVLS-----AELGMAYQVS 94 (114)
T ss_pred HHHhCCCCCcEEec-----HHHHhhcCCC
Confidence 999997 4777652 2367888874
No 29
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.78 E-value=6.4e-19 Score=131.37 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=76.8
Q ss_pred cccCCCeEEEcCCCC--eeecCcc-CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592 60 VAIGGKFELVDCNNK--PVKSEDF-LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP 136 (183)
Q Consensus 60 ~~~~p~f~l~d~~G~--~v~l~~~-~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~ 136 (183)
+..+|+|+++|.+|+ .++++++ +||+++|+||++|||+ |+.++|.+++++++ ++++++|+.| ++.
T Consensus 37 G~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~--------~~~vi~V~~~---~~~ 104 (173)
T TIGR00385 37 GKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPP-CRAEHPYLNELAKD--------GLPIVGVDYK---DQS 104 (173)
T ss_pred CCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHH-HHHHHHHHHHHHHc--------CCEEEEEECC---CCh
Confidence 455699999999987 4555565 7999999999999998 99999999988652 6899999987 566
Q ss_pred HHHHHHHHHhCCCeEE-ecCCHHHHHHHHhhcCee
Q psy17592 137 ELVGKYVKEFSPKFIG-LTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~gv~ 170 (183)
+..++|+++++.+|+. +.++.. .+++.||++
T Consensus 105 ~~~~~~~~~~~~~f~~v~~D~~~---~~~~~~~v~ 136 (173)
T TIGR00385 105 QNALKFLKELGNPYQAILIDPNG---KLGLDLGVY 136 (173)
T ss_pred HHHHHHHHHcCCCCceEEECCCC---chHHhcCCe
Confidence 7778999999999874 344433 477778764
No 30
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.77 E-value=1.9e-18 Score=130.00 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=75.5
Q ss_pred cccCCCeEEEcCCCCeeecCccCCCEE-EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCC
Q psy17592 60 VAIGGKFELVDCNNKPVKSEDFLGKWA-LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERD 134 (183)
Q Consensus 60 ~~~~p~f~l~d~~G~~v~l~~~~gk~v-ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d 134 (183)
....|+|+++|.+|+.+++++++||++ |+.+|++|||+ |..|+|.|++++++++++ ++.+|+|+.|. +.+
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~-C~~e~p~l~~l~~~~~~~----gv~vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGL-TSDHYTQLVELYKQYKSQ----GLEILAFPCNQFMEQEPW 91 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCc-hHHHHHHHHHHHHHHhhC----CcEEEEEecccccccCCC
Confidence 344599999999999999999999964 55669999998 999999999999999865 79999999752 223
Q ss_pred cHHHHHHHHH-HhCCCeEEec
Q psy17592 135 TPELVGKYVK-EFSPKFIGLT 154 (183)
Q Consensus 135 ~~~~~~~~~~-~~~~~~~~l~ 154 (183)
+.+.+++|.+ +++.+|+.+.
T Consensus 92 ~~~~~~~f~~~~~~~~fpv~~ 112 (183)
T PTZ00256 92 DEPEIKEYVQKKFNVDFPLFQ 112 (183)
T ss_pred CHHHHHHHHHHhcCCCCCCce
Confidence 5688889975 7788888774
No 31
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.77 E-value=1.7e-18 Score=122.49 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=77.7
Q ss_pred CCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC--CCCcHHHHHHHHHHhCCCe
Q psy17592 73 NKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP--ERDTPELVGKYVKEFSPKF 150 (183)
Q Consensus 73 G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp--~~d~~~~~~~~~~~~~~~~ 150 (183)
|+++++++++||++||+||++|||+ |..++|.|++++++++++ ++.+++|+.+. ..++++.+++|+++++.+|
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~-C~~~~p~l~~l~~~~~~~----~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCIN-CLHTLPYLTDLEQKYKDD----GLVVIGVHSPEFAFERDLANVKSAVLRYGITY 87 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHcCcC----CeEEEEeccCccccccCHHHHHHHHHHcCCCC
Confidence 5789999999999999999999998 999999999999999865 79999998742 1257899999999999999
Q ss_pred EEecCCHHHHHHHHhhcCee
Q psy17592 151 IGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 151 ~~l~~~~~~~~~~~~~~gv~ 170 (183)
+.+.+.... +++.||+.
T Consensus 88 p~~~D~~~~---~~~~~~v~ 104 (126)
T cd03012 88 PVANDNDYA---TWRAYGNQ 104 (126)
T ss_pred CEEECCchH---HHHHhCCC
Confidence 988876544 77788874
No 32
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.76 E-value=1.5e-18 Score=132.38 Aligned_cols=104 Identities=14% Similarity=0.234 Sum_probs=82.8
Q ss_pred CcccCCCeEEEcCCCCeeecCccCCCEEEE-EEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHH
Q psy17592 59 KVAIGGKFELVDCNNKPVKSEDFLGKWALI-YFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137 (183)
Q Consensus 59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll-~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~ 137 (183)
.+..+|+|++.+.+| .+++++++||+++| +||++|||. |..|++.|++++++++++ ++++++||+|......+
T Consensus 4 vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~-C~~El~~l~~~~~~f~~~----~~~vi~vS~D~~~~~~~ 77 (202)
T PRK13190 4 LGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPV-CTTEFIAFSRRYEDFKKL----GVELVGLSVDSIYSHIA 77 (202)
T ss_pred CCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHC----CCEEEEEeCCCHHHHHH
Confidence 455669999999888 68999999998766 689999997 999999999999999866 89999999984222223
Q ss_pred HHHHHHHHhC--CCeEEecCCHHHHHHHHhhcCeeE
Q psy17592 138 LVGKYVKEFS--PKFIGLTGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 138 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~gv~~ 171 (183)
.++++.++++ .+|+.+.+... .++++||+..
T Consensus 78 w~~~~~~~~g~~~~fPll~D~~~---~ia~~ygv~~ 110 (202)
T PRK13190 78 WLRDIEERFGIKIPFPVIADIDK---ELAREYNLID 110 (202)
T ss_pred HHHhHHHhcCCCceEEEEECCCh---HHHHHcCCcc
Confidence 4455555666 47999987654 4899999853
No 33
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.76 E-value=3.8e-18 Score=121.40 Aligned_cols=95 Identities=20% Similarity=0.362 Sum_probs=76.8
Q ss_pred EEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 68 LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 68 l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
|.|.+|+.+++++++||++||+||++||++ |+.++|.|+++++++.++ ..++++++|++| ++.+.+++|.++++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~~~~~~~~~--~~~~~vv~is~d---~~~~~~~~~~~~~~ 76 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPP-CRAFTPKLVEFYEKLKES--GKNFEIVFISWD---RDEESFNDYFSKMP 76 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChH-HHHHhHHHHHHHHHHHhc--CCCEEEEEEECC---CCHHHHHHHHHcCC
Confidence 568899999999999999999999999998 999999999999998764 347999999999 35678888887753
Q ss_pred CCeEEecC-CHHHHHHHHhhcCee
Q psy17592 148 PKFIGLTG-TVEQVAAACKAYRVY 170 (183)
Q Consensus 148 ~~~~~l~~-~~~~~~~~~~~~gv~ 170 (183)
|..+.. +.+....+++.||+.
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~v~ 98 (131)
T cd03009 77 --WLAVPFSDRERRSRLNRTFKIE 98 (131)
T ss_pred --eeEcccCCHHHHHHHHHHcCCC
Confidence 444332 224445788889875
No 34
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.75 E-value=1.2e-17 Score=142.12 Aligned_cols=106 Identities=15% Similarity=0.076 Sum_probs=84.5
Q ss_pred CCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC--CC
Q psy17592 57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE--RD 134 (183)
Q Consensus 57 ~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~--~d 134 (183)
+..+..+|+|++.|.+|+.++++ +||+|||+|||+||++ |+.++|.|++++++++.+ ++.||+|+++.. .+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCpp-Ck~emP~L~eL~~e~k~~----~v~VI~Vs~~~~~~e~ 104 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPL-CLSELGETEKWAQDAKFS----SANLITVASPGFLHEK 104 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHH-HHHHHHHHHHHHHHhccC----CeEEEEEecccccccc
Confidence 34455679999999999999987 8999999999999998 999999999999988754 799999987532 23
Q ss_pred cHHHHHHHHHHhCC-CeEEecCCHHHHHHHHhhcCeeEe
Q psy17592 135 TPELVGKYVKEFSP-KFIGLTGTVEQVAAACKAYRVYFS 172 (183)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~ 172 (183)
+.+.+++|.++.+. .++.+.+... .+++.||+.--
T Consensus 105 ~~~~~~~~~~~~~y~~~pV~~D~~~---~lak~fgV~gi 140 (521)
T PRK14018 105 KDGDFQKWYAGLDYPKLPVLTDNGG---TLAQSLNISVY 140 (521)
T ss_pred cHHHHHHHHHhCCCcccceeccccH---HHHHHcCCCCc
Confidence 56778888887764 5677765543 47888887543
No 35
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.74 E-value=8.9e-18 Score=121.43 Aligned_cols=99 Identities=17% Similarity=0.282 Sum_probs=83.3
Q ss_pred CCCeEEEcCCCCeeecCccC-CCEE-EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592 63 GGKFELVDCNNKPVKSEDFL-GKWA-LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG 140 (183)
Q Consensus 63 ~p~f~l~d~~G~~v~l~~~~-gk~v-ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~ 140 (183)
+|+|+++|.+|+.++++++. +|++ |++||++|||. |+.+++.|+++++++.+. ++++|+|+.| +.+.+.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~-C~~~~~~l~~~~~~~~~~----~v~vv~V~~~----~~~~~~ 72 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPF-CREYLRALSKLLPELDAL----GVELVAVGPE----SPEKLE 72 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChh-HHHHHHHHHHHHHHHHhc----CeEEEEEeCC----CHHHHH
Confidence 48999999999999999875 4655 55557999997 999999999999999865 7999999987 456677
Q ss_pred HHHHHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592 141 KYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSA 173 (183)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~ 173 (183)
+|.++++.+|+.+.++... +++.||+....
T Consensus 73 ~~~~~~~~~~p~~~D~~~~---~~~~~g~~~~~ 102 (149)
T cd02970 73 AFDKGKFLPFPVYADPDRK---LYRALGLVRSL 102 (149)
T ss_pred HHHHhcCCCCeEEECCchh---HHHHcCceecC
Confidence 8999999999999886544 88999987544
No 36
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.72 E-value=2.1e-17 Score=116.08 Aligned_cols=93 Identities=15% Similarity=0.238 Sum_probs=81.6
Q ss_pred CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592 64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV 143 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~ 143 (183)
|+|+++|.+|+.+++.+++||+++|+||++||++ |+.++|.|++++++ +.+++|++|+ ++++.+++|+
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~-C~~~~~~l~~~~~~---------~~~i~i~~~~--~~~~~~~~~~ 68 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPV-CRFTSPTVNQLAAD---------YPVVSVALRS--GDDGAVARFM 68 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChh-hhhhChHHHHHHhh---------CCEEEEEccC--CCHHHHHHHH
Confidence 7899999999999999999999999999999997 99999999999864 5678899884 5789999999
Q ss_pred HHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592 144 KEFSPKFIGLTGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~~~gv~~ 171 (183)
++++.+|+.+.++.. .+++.|++.-
T Consensus 69 ~~~~~~~~~~~d~~~---~~~~~~~i~~ 93 (123)
T cd03011 69 QKKGYGFPVINDPDG---VISARWGVSV 93 (123)
T ss_pred HHcCCCccEEECCCc---HHHHhCCCCc
Confidence 999999998877554 4788888643
No 37
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.72 E-value=4.6e-17 Score=122.61 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=84.0
Q ss_pred cccCCCeEEEcC-CC--CeeecCccCCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592 60 VAIGGKFELVDC-NN--KPVKSEDFLGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135 (183)
Q Consensus 60 ~~~~p~f~l~d~-~G--~~v~l~~~~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~ 135 (183)
+..+|+|+.... +| ..++|++++||++||+|| ++|||. |..|++.|+++++++.+. ++++++||.| +
T Consensus 5 ~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~-C~~el~~l~~~~~~f~~~----g~~vigIS~D----~ 75 (187)
T PRK10382 5 NTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFV-CPTELGDVADHYEELQKL----GVDVYSVSTD----T 75 (187)
T ss_pred CCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCc-CHHHHHHHHHHHHHHHhC----CCEEEEEeCC----C
Confidence 345599997763 44 467788999999999999 999996 999999999999999866 8999999987 6
Q ss_pred HHHHHHHHHHh----CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592 136 PELVGKYVKEF----SPKFIGLTGTVEQVAAACKAYRVYFS 172 (183)
Q Consensus 136 ~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~gv~~~ 172 (183)
+...++|.+.. +.+|+.+.+... .++++||+...
T Consensus 76 ~~~~~a~~~~~~~~~~l~fpllsD~~~---~ia~~ygv~~~ 113 (187)
T PRK10382 76 HFTHKAWHSSSETIAKIKYAMIGDPTG---ALTRNFDNMRE 113 (187)
T ss_pred HHHHHHHHHhhccccCCceeEEEcCch---HHHHHcCCCcc
Confidence 78888998774 688999987644 49999998643
No 38
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.72 E-value=5.3e-17 Score=111.27 Aligned_cols=96 Identities=28% Similarity=0.496 Sum_probs=85.6
Q ss_pred CeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHH
Q psy17592 65 KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVK 144 (183)
Q Consensus 65 ~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~ 144 (183)
+|++.+.+|+.+++++++||+++|+||++||+. |...++.|.++.+++.+. ++.+++|++|+. +++.+++|++
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~~~----~~~~~~v~~d~~--~~~~~~~~~~ 73 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPP-CRAEMPELEALAKEYKDD----GVEVVGVNVDDD--DPAAVKAFLK 73 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChh-HHHHhHHHHHHHHHhCCC----CeEEEEEECCCC--CHHHHHHHHH
Confidence 478899999999999999999999999999997 999999999999998744 799999999963 6999999999
Q ss_pred HhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592 145 EFSPKFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
+++.+|+.+.+... ++.+.||+.
T Consensus 74 ~~~~~~~~~~~~~~---~~~~~~~~~ 96 (116)
T cd02966 74 KYGITFPVLLDPDG---ELAKAYGVR 96 (116)
T ss_pred HcCCCcceEEcCcc---hHHHhcCcC
Confidence 99999999987643 478888874
No 39
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.72 E-value=4.9e-17 Score=121.89 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcHHH
Q psy17592 63 GGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTPEL 138 (183)
Q Consensus 63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~~~ 138 (183)
.++|+++|.+|+.+++++++||++||+||||||+. |. +++.|++++++++++ +++|++|+.+- +.++.+.
T Consensus 5 ~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~-~~-q~~~L~~L~~~y~~~----gl~Vlg~p~nqf~~qe~~~~~e 78 (183)
T PRK10606 5 ILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGL-TP-QYEQLENIQKAWADQ----GFVVLGFPCNQFLGQEPGSDEE 78 (183)
T ss_pred ccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCC-cH-HHHHHHHHHHHHhhC----CeEEEEeeccccccCCCCCHHH
Confidence 37999999999999999999999999999999997 85 799999999999866 89999998852 2367899
Q ss_pred HHHHHH-HhCCCeEEe
Q psy17592 139 VGKYVK-EFSPKFIGL 153 (183)
Q Consensus 139 ~~~~~~-~~~~~~~~l 153 (183)
+++|++ +++.+|+.+
T Consensus 79 i~~f~~~~~g~~Fpv~ 94 (183)
T PRK10606 79 IKTYCRTTWGVTFPMF 94 (183)
T ss_pred HHHHHHHccCCCceeE
Confidence 999997 789888876
No 40
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.70 E-value=5.3e-17 Score=124.88 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=80.6
Q ss_pred CcccCCCeEEEcCCCCeeecCccCCCEEEE-EEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHH
Q psy17592 59 KVAIGGKFELVDCNNKPVKSEDFLGKWALI-YFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137 (183)
Q Consensus 59 ~~~~~p~f~l~d~~G~~v~l~~~~gk~vll-~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~ 137 (183)
.+..+|+|++.+.+|+...+++++|||++| +||++|||. |..|++.|+++++++++. ++++++||+|. ..
T Consensus 9 iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpv-C~tEl~~l~~~~~ef~~~----g~~VigvS~Ds----~~ 79 (215)
T PRK13191 9 IGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPV-CTTEFYSFAKKYEEFKKL----NTELIGLSVDS----NI 79 (215)
T ss_pred CCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC----CCEEEEEECCC----HH
Confidence 455679999999999754445589998765 889999996 999999999999999876 89999999983 34
Q ss_pred HHHH---HHHH---hCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592 138 LVGK---YVKE---FSPKFIGLTGTVEQVAAACKAYRVYFS 172 (183)
Q Consensus 138 ~~~~---~~~~---~~~~~~~l~~~~~~~~~~~~~~gv~~~ 172 (183)
..++ +.++ ++.+|+.+.+... .++++||+...
T Consensus 80 ~h~aw~~~~~~~~~~~i~fPllsD~~~---~ia~~ygv~~~ 117 (215)
T PRK13191 80 SHIEWVMWIEKNLKVEVPFPIIADPMG---NVAKRLGMIHA 117 (215)
T ss_pred HHHHHHhhHHHhcCCCCceEEEECCch---HHHHHcCCccc
Confidence 4444 3443 3578999988654 49999998653
No 41
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.70 E-value=1.2e-16 Score=122.13 Aligned_cols=98 Identities=22% Similarity=0.322 Sum_probs=80.5
Q ss_pred ccCCCeEEEcCCCCeeecCccCC-CEE-EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592 61 AIGGKFELVDCNNKPVKSEDFLG-KWA-LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL 138 (183)
Q Consensus 61 ~~~p~f~l~d~~G~~v~l~~~~g-k~v-ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~ 138 (183)
..+|+|++.+.+|+ +++++++| |++ |++||++|||. |..|++.|+++++++++. ++++++||+|+ .+.
T Consensus 3 ~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~-C~~el~~l~~~~~~f~~~----gv~vigvS~D~----~~~ 72 (203)
T cd03016 3 DTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPV-CTTELGAFAKLAPEFKKR----NVKLIGLSVDS----VES 72 (203)
T ss_pred CCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCc-CHHHHHHHHHHHHHHHHc----CCEEEEEECCC----HHH
Confidence 45699999999985 89999998 775 55899999996 999999999999999876 89999999983 455
Q ss_pred HHHHHHH------hCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592 139 VGKYVKE------FSPKFIGLTGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 139 ~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~gv~~ 171 (183)
.++|.++ .+.+|+.+.+... .++++||+..
T Consensus 73 ~~~~~~~i~~~~~~~~~fpil~D~~~---~ia~~yg~~~ 108 (203)
T cd03016 73 HIKWIEDIEEYTGVEIPFPIIADPDR---EVAKLLGMID 108 (203)
T ss_pred HHHHHhhHHHhcCCCCceeEEECchH---HHHHHcCCcc
Confidence 5555544 5789999988654 4899999864
No 42
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.70 E-value=7.4e-17 Score=124.04 Aligned_cols=100 Identities=21% Similarity=0.245 Sum_probs=81.6
Q ss_pred cccCCCeEEEcCCCCeeecCccCCCEE-EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH
Q psy17592 60 VAIGGKFELVDCNNKPVKSEDFLGKWA-LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPEL 138 (183)
Q Consensus 60 ~~~~p~f~l~d~~G~~v~l~~~~gk~v-ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~ 138 (183)
+..+|+|++.+.+|+...+++++|||+ |++||++|||. |..|++.|+++++++.+. ++++|+||.| +.+.
T Consensus 5 Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpv-Ct~El~~l~~~~~~f~~~----gv~vigIS~D----~~~~ 75 (215)
T PRK13599 5 GEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPV-CTTEFVEFARKANDFKEL----NTELIGLSVD----QVFS 75 (215)
T ss_pred CCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC----CCEEEEEeCC----CHHH
Confidence 445699999999999888899999986 67999999996 999999999999999876 7999999998 3444
Q ss_pred HHH---HHHH---hCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592 139 VGK---YVKE---FSPKFIGLTGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 139 ~~~---~~~~---~~~~~~~l~~~~~~~~~~~~~~gv~~ 171 (183)
.++ ++++ ++.+|+.+.++... +++.||+..
T Consensus 76 ~~~w~~~i~~~~~~~i~fPil~D~~~~---va~~yg~~~ 111 (215)
T PRK13599 76 HIKWVEWIKDNTNIAIPFPVIADDLGK---VSNQLGMIH 111 (215)
T ss_pred HHHHHHhHHHhcCCCCceeEEECCCch---HHHHcCCCc
Confidence 444 4444 35789999876554 889999753
No 43
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.68 E-value=2.5e-16 Score=105.79 Aligned_cols=82 Identities=24% Similarity=0.411 Sum_probs=70.0
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHH
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAA 162 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (183)
||+++|+||++||++ |..++|.|.++++++++. +++++|+|+.| ++.+..+++.++++.+|..+..+.+....
T Consensus 1 gK~~ll~fwa~~c~~-c~~~~~~l~~l~~~~~~~---~~v~~v~Vs~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (95)
T PF13905_consen 1 GKPVLLYFWASWCPP-CKKELPKLKELYKKYKKK---DDVEFVFVSLD---EDEEEWKKFLKKNNFPWYNVPFDDDNNSE 73 (95)
T ss_dssp TSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTTT---TTEEEEEEE-S---SSHHHHHHHHHTCTTSSEEEETTTHHHHH
T ss_pred CCEEEEEEECCCCHH-HHHHHHHHHHHHHHhCCC---CCEEEEEEEeC---CCHHHHHHHHHhcCCCceEEeeCcchHHH
Confidence 899999999999998 999999999999999842 48999999999 57889999999998899888776666778
Q ss_pred HHhhcCeeE
Q psy17592 163 ACKAYRVYF 171 (183)
Q Consensus 163 ~~~~~gv~~ 171 (183)
+.+.|++..
T Consensus 74 l~~~~~i~~ 82 (95)
T PF13905_consen 74 LLKKYGING 82 (95)
T ss_dssp HHHHTT-TS
T ss_pred HHHHCCCCc
Confidence 999998763
No 44
>PRK15000 peroxidase; Provisional
Probab=99.68 E-value=1.7e-16 Score=120.82 Aligned_cols=101 Identities=14% Similarity=0.163 Sum_probs=78.5
Q ss_pred cccCCCeEEEcCC--CCe---eecCcc-CCCEEEEEEEcC-CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592 60 VAIGGKFELVDCN--NKP---VKSEDF-LGKWALIYFGFT-HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE 132 (183)
Q Consensus 60 ~~~~p~f~l~d~~--G~~---v~l~~~-~gk~vll~f~~t-~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~ 132 (183)
+..+|+|++.+.. |+. ++++++ +|||+||+||++ |||. |+.|++.|++++++++++ ++++++||.|
T Consensus 5 g~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~v-C~~El~~l~~~~~~f~~~----g~~vigvS~D-- 77 (200)
T PRK15000 5 TRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFV-CPSELIAFDKRYEEFQKR----GVEVVGVSFD-- 77 (200)
T ss_pred CCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC----CCEEEEEECC--
Confidence 4456999999863 454 455555 899999999996 8896 999999999999999876 8999999998
Q ss_pred CCcHHHHHHHHH----HhC---CCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592 133 RDTPELVGKYVK----EFS---PKFIGLTGTVEQVAAACKAYRVYFS 172 (183)
Q Consensus 133 ~d~~~~~~~~~~----~~~---~~~~~l~~~~~~~~~~~~~~gv~~~ 172 (183)
+.+..+.|.+ +.+ .+|+.+.+... .+++.||+...
T Consensus 78 --~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~---~ia~~ygv~~~ 119 (200)
T PRK15000 78 --SEFVHNAWRNTPVDKGGIGPVKYAMVADVKR---EIQKAYGIEHP 119 (200)
T ss_pred --CHHHHHHHHhhHHHhCCccccCceEEECCCc---HHHHHcCCccC
Confidence 4455555543 344 58999988654 48999998753
No 45
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.67 E-value=1.2e-16 Score=121.69 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=79.6
Q ss_pred CcccCCCeEEEc----CCCCeeecCccCCCEEEEEEEc-CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC
Q psy17592 59 KVAIGGKFELVD----CNNKPVKSEDFLGKWALIYFGF-THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER 133 (183)
Q Consensus 59 ~~~~~p~f~l~d----~~G~~v~l~~~~gk~vll~f~~-t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~ 133 (183)
.+..+|+|++.+ .+|+.+++++++||++||+||+ +||+. |+.+++.|.++++++.+. ++++|+||.|+.
T Consensus 8 ~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~-C~~e~~~l~~~~~~f~~~----g~~vv~IS~d~~- 81 (199)
T PTZ00253 8 INHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFV-CPTEIIQFSDSVKRFNEL----NCEVLACSMDSE- 81 (199)
T ss_pred cCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCc-CHHHHHHHHHHHHHHHHc----CCEEEEEeCCCH-
Confidence 345669999765 4668999999999999999995 77995 999999999999999876 899999999842
Q ss_pred CcHHHHHHHHH--H----h-CCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592 134 DTPELVGKYVK--E----F-SPKFIGLTGTVEQVAAACKAYRVYFS 172 (183)
Q Consensus 134 d~~~~~~~~~~--~----~-~~~~~~l~~~~~~~~~~~~~~gv~~~ 172 (183)
....+|.. + . +.+|+.+.+... ++++.||++..
T Consensus 82 ---~~~~~~~~~~~~~~~~~~~~fpll~D~~~---~ia~~ygv~~~ 121 (199)
T PTZ00253 82 ---YAHLQWTLQERKKGGLGTMAIPMLADKTK---SIARSYGVLEE 121 (199)
T ss_pred ---HHHHHHHhChHhhCCccccccceEECcHh---HHHHHcCCccc
Confidence 22333322 1 1 368999988654 48999998644
No 46
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.67 E-value=4.3e-16 Score=122.46 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=82.8
Q ss_pred CCcccCCCeEEEc-CCCC--eeecCcc-CCCEEEEEEE-cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592 58 GKVAIGGKFELVD-CNNK--PVKSEDF-LGKWALIYFG-FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE 132 (183)
Q Consensus 58 ~~~~~~p~f~l~d-~~G~--~v~l~~~-~gk~vll~f~-~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~ 132 (183)
..+..+|+|++.+ .+|+ .++++++ +||++||+|| ++|||. |..|++.++++++++++. ++++++||.|
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpv-Ct~El~~l~~~~~ef~~~----gv~VigIS~D-- 141 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFV-CPSELLGFSERLKEFEER----GVKVLGVSVD-- 141 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC----CCEEEEEECC--
Confidence 3456679999987 4564 6899998 8999888877 899997 999999999999999876 8999999998
Q ss_pred CCcHHHHHHHHHH-------hCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592 133 RDTPELVGKYVKE-------FSPKFIGLTGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 133 ~d~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~gv~~ 171 (183)
+++..++|.+. .+.+|+.+.+.. .+++++||+..
T Consensus 142 --s~~~h~aw~~~~~~~~g~~~l~fPlLsD~~---~~iakayGv~~ 182 (261)
T PTZ00137 142 --SPFSHKAWKELDVRQGGVSPLKFPLFSDIS---REVSKSFGLLR 182 (261)
T ss_pred --CHHHHHHHHhhhhhhccccCcceEEEEcCC---hHHHHHcCCCC
Confidence 45566666653 467899998864 45999999863
No 47
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.66 E-value=5.1e-16 Score=142.62 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=86.7
Q ss_pred CCcccCCCeEEEc--CCCCeeec-CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe---CC
Q psy17592 58 GKVAIGGKFELVD--CNNKPVKS-EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV---DP 131 (183)
Q Consensus 58 ~~~~~~p~f~l~d--~~G~~v~l-~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~---dp 131 (183)
..+..+|+|+..+ .+|+++++ ++++||+|||+|||+||++ |+.++|.|++++++++++ ++.||+|+. |.
T Consensus 392 ~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~p-C~~e~P~L~~l~~~y~~~----~~~vvgV~~~~~D~ 466 (1057)
T PLN02919 392 KTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCIN-CMHVLPDLEFLEKKYKDQ----PFTVVGVHSAKFDN 466 (1057)
T ss_pred ccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChh-HHhHhHHHHHHHHHcCCC----CeEEEEEecccccc
Confidence 3456679999876 68999997 5899999999999999998 999999999999999765 799999974 43
Q ss_pred CCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592 132 ERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
+ ++.+.+++|+++++..|+.+.+... .+++.||+.
T Consensus 467 ~-~~~~~~~~~~~~~~i~~pvv~D~~~---~~~~~~~V~ 501 (1057)
T PLN02919 467 E-KDLEAIRNAVLRYNISHPVVNDGDM---YLWRELGVS 501 (1057)
T ss_pred c-ccHHHHHHHHHHhCCCccEEECCch---HHHHhcCCC
Confidence 2 3578899999999999998876544 377788764
No 48
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.65 E-value=9.2e-16 Score=112.40 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=87.6
Q ss_pred cccCCCeEEEcCC---CCeeecCc-cCCCEE-EEEEEcCCCCCCcHHH-HHHHHHHHHHhhCCCCCCCe-eEEEEEeCCC
Q psy17592 60 VAIGGKFELVDCN---NKPVKSED-FLGKWA-LIYFGFTHCPDICPDE-LEKMAAVVNKIDGQPNVPNI-TPIFISVDPE 132 (183)
Q Consensus 60 ~~~~p~f~l~d~~---G~~v~l~~-~~gk~v-ll~f~~t~C~~~C~~~-~~~l~~l~~~~~~~~~~~~v-~~v~Is~dp~ 132 (183)
+..+|+|++.+.+ |+.++|++ ++||++ |++|+..|||. |..| ++.+++.++++.+. ++ .+++||.|
T Consensus 2 G~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~-Ct~e~~~~~~~~~~~f~~~----g~~~V~~iS~D-- 74 (155)
T cd03013 2 GDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPT-CSAQHLPGYVENADELKAK----GVDEVICVSVN-- 74 (155)
T ss_pred CCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCC-CchhHHHHHHHhHHHHHHC----CCCEEEEEECC--
Confidence 3456999999985 99999999 588765 55567999996 9999 99999999999866 77 69999987
Q ss_pred CCcHHHHHHHHHHhCC--CeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592 133 RDTPELVGKYVKEFSP--KFIGLTGTVEQVAAACKAYRVYFSAG 174 (183)
Q Consensus 133 ~d~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~gv~~~~~ 174 (183)
+++..++|.++++. +|+.|++... +++++||+..++.
T Consensus 75 --~~~~~~~~~~~~~~~~~f~lLsD~~~---~~~~~ygv~~~~~ 113 (155)
T cd03013 75 --DPFVMKAWGKALGAKDKIRFLADGNG---EFTKALGLTLDLS 113 (155)
T ss_pred --CHHHHHHHHHhhCCCCcEEEEECCCH---HHHHHcCCCcccc
Confidence 78899999999997 8999988654 4999999987654
No 49
>PRK13189 peroxiredoxin; Provisional
Probab=99.64 E-value=1.4e-15 Score=117.58 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=79.1
Q ss_pred CcccCCCeEEEcCCCCeeecCc-cCCCEEE-EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592 59 KVAIGGKFELVDCNNKPVKSED-FLGKWAL-IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP 136 (183)
Q Consensus 59 ~~~~~p~f~l~d~~G~~v~l~~-~~gk~vl-l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~ 136 (183)
.+..+|+|++.+.+|+ +++++ ++|||++ ++||++|||. |..|++.|+++++++++. ++++++||+|. .
T Consensus 11 vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpv-C~tEl~~l~~~~~ef~~~----~v~VigvS~D~----~ 80 (222)
T PRK13189 11 IGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPV-CTTEFVAFQKRYDEFREL----NTELIGLSIDQ----V 80 (222)
T ss_pred CCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCC-CHHHHHHHHHHHHHHHHc----CCEEEEEECCC----H
Confidence 4566799999999996 67766 5999765 5789999996 999999999999999866 89999999983 4
Q ss_pred HHHHHHHHH----h--CCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592 137 ELVGKYVKE----F--SPKFIGLTGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 137 ~~~~~~~~~----~--~~~~~~l~~~~~~~~~~~~~~gv~~ 171 (183)
....+|.+. . +.+|+.+.+... .++++||+..
T Consensus 81 ~~h~aw~~~~~~~~g~~i~fPllsD~~~---~ia~~ygv~~ 118 (222)
T PRK13189 81 FSHIKWVEWIKEKLGVEIEFPIIADDRG---EIAKKLGMIS 118 (222)
T ss_pred HHHHHHHHhHHHhcCcCcceeEEEcCcc---HHHHHhCCCc
Confidence 444444443 2 368888887654 4899999864
No 50
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.64 E-value=1.5e-15 Score=113.50 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=66.2
Q ss_pred CCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeE------EEEEeCCCC-CcHHHHHHHHH
Q psy17592 72 NNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITP------IFISVDPER-DTPELVGKYVK 144 (183)
Q Consensus 72 ~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~------v~Is~dp~~-d~~~~~~~~~~ 144 (183)
+.+.+++++++||+.||||||+||++ |+.|+|.|.++.++ ++.+ ++|+.|... ++...++.|++
T Consensus 48 ~y~~~~~~~l~GKV~lvn~~Aswc~~-c~~e~P~l~~l~~~--------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie 118 (184)
T TIGR01626 48 VYQPWGSAELAGKVRVVHHIAGRTSA-KEXNASLIDAIKAA--------KFPPVKYQTTTIINADDAIVGTGMFVKSSAK 118 (184)
T ss_pred cceeccHHHcCCCEEEEEEEecCCCh-hhccchHHHHHHHc--------CCCcccccceEEEECccchhhHHHHHHHHHH
Confidence 44577888999999999999999998 99999999999542 6778 999988311 13345666677
Q ss_pred HhCCCeE---EecCCHHHHHHHHhhcCeeEe
Q psy17592 145 EFSPKFI---GLTGTVEQVAAACKAYRVYFS 172 (183)
Q Consensus 145 ~~~~~~~---~l~~~~~~~~~~~~~~gv~~~ 172 (183)
+.+..++ .+.++... +++.||++-.
T Consensus 119 ~~~~~~P~~~vllD~~g~---v~~~~gv~~~ 146 (184)
T TIGR01626 119 KGKKENPWSQVVLDDKGA---VKNAWQLNSE 146 (184)
T ss_pred HhcccCCcceEEECCcch---HHHhcCCCCC
Confidence 7776666 66665433 6778887644
No 51
>KOG2501|consensus
Probab=99.63 E-value=1.8e-15 Score=108.98 Aligned_cols=103 Identities=17% Similarity=0.292 Sum_probs=91.2
Q ss_pred CeEEEcCCCCeeecC-ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592 65 KFELVDCNNKPVKSE-DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV 143 (183)
Q Consensus 65 ~f~l~d~~G~~v~l~-~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~ 143 (183)
...|...+|..+..+ .++||+|.++|.|.|||+ |+...|.|.++++++++. ...++||+||.| .+.+.+..|.
T Consensus 14 g~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~p-CR~FTP~Lk~fYe~l~~~--~~~fEVvfVS~D---~~~~~~~~y~ 87 (157)
T KOG2501|consen 14 GNRLRKQDGTEVLASEALQGKVVGLYFSAHWCPP-CRDFTPILKDFYEELKDN--AAPFEVVFVSSD---RDEESLDEYM 87 (157)
T ss_pred CCeeeccCCccchHhHhhCCcEEEEEEEEEECCc-hhhCCchHHHHHHHHHhc--CCceEEEEEecC---CCHHHHHHHH
Confidence 367888888877766 689999999999999999 999999999999999887 557999999999 5789999999
Q ss_pred HHhCCCeEEecCCHHHHHHHHhhcCeeEee
Q psy17592 144 KEFSPKFIGLTGTVEQVAAACKAYRVYFSA 173 (183)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~ 173 (183)
++++.+|..+.-..+.++.+.+.|+|.-.+
T Consensus 88 ~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP 117 (157)
T KOG2501|consen 88 LEHHGDWLAIPFGDDLIQKLSEKYEVKGIP 117 (157)
T ss_pred HhcCCCeEEecCCCHHHHHHHHhcccCcCc
Confidence 999999999988888889999999876443
No 52
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.55 E-value=3.7e-14 Score=105.58 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=49.2
Q ss_pred CCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 63 GGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 63 ~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
.++|++. +|+.+++++++ ||+||++|||+ |+.++|.|+++++++ ++.+++|++|.
T Consensus 55 ~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~-C~~e~P~L~~l~~~~-------g~~Vi~Vs~D~ 109 (181)
T PRK13728 55 PRWFRLS--NGRQVNLADWK----VVLFMQGHCPY-CHQFDPVLKQLAQQY-------GFSVFPYTLDG 109 (181)
T ss_pred CCccCCC--CCCEeehhHce----EEEEECCCCHh-HHHHHHHHHHHHHHc-------CCEEEEEEeCC
Confidence 3677774 89999999997 78899999998 999999999999986 58999999984
No 53
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.1e-13 Score=98.17 Aligned_cols=106 Identities=17% Similarity=0.258 Sum_probs=88.6
Q ss_pred cccCCCeEEEcC-CCC---eeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592 60 VAIGGKFELVDC-NNK---PVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135 (183)
Q Consensus 60 ~~~~p~f~l~d~-~G~---~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~ 135 (183)
+..+|+|+.+.. .|. .++++++.|||++|+||...-.++|+.|+..+++.+.++++. ++++++||+| +
T Consensus 6 g~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~----g~eVigvS~D----s 77 (194)
T COG0450 6 GKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR----GVEVIGVSTD----S 77 (194)
T ss_pred CCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc----CCEEEEEecC----c
Confidence 345599999988 774 899999999999999999999999999999999999999987 8999999998 5
Q ss_pred HHHHHHHHHH----hC---CCeEEecCCHHHHHHHHhhcCeeEeeCCC
Q psy17592 136 PELVGKYVKE----FS---PKFIGLTGTVEQVAAACKAYRVYFSAGPK 176 (183)
Q Consensus 136 ~~~~~~~~~~----~~---~~~~~l~~~~~~~~~~~~~~gv~~~~~~~ 176 (183)
.....+|.+. .+ .+|+.+.+...+ +++.||+.......
T Consensus 78 ~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~---vs~~ygvl~~~~g~ 122 (194)
T COG0450 78 VFSHKAWKATIREAGGIGKIKFPMIADPKGE---IARAYGVLHPEEGL 122 (194)
T ss_pred HHHHHHHHhcHHhcCCccceecceEEcCchh---HHHHcCCcccCCCc
Confidence 5666666665 34 689999877665 99999998655443
No 54
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.38 E-value=1.7e-12 Score=94.80 Aligned_cols=48 Identities=17% Similarity=0.406 Sum_probs=39.9
Q ss_pred CCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 72 NNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 72 ~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
.|+.++++ ++.||+||++|||+ |+.|+|.|+++++++ ++.+++|++|.
T Consensus 43 ~G~~~~l~----~~~lvnFWAsWCpp-Cr~e~P~L~~l~~~~-------~~~Vi~Vs~d~ 90 (153)
T TIGR02738 43 QGRHANQD----DYALVFFYQSTCPY-CHQFAPVLKRFSQQF-------GLPVYAFSLDG 90 (153)
T ss_pred cchhhhcC----CCEEEEEECCCChh-HHHHHHHHHHHHHHc-------CCcEEEEEeCC
Confidence 36666654 44599999999998 999999999999876 47899999984
No 55
>KOG0855|consensus
Probab=99.26 E-value=1.6e-11 Score=88.78 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=89.0
Q ss_pred cCCCcccCCCeEEEcCCCCeeecCccCC-CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC
Q psy17592 56 NLGKVAIGGKFELVDCNNKPVKSEDFLG-KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD 134 (183)
Q Consensus 56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~g-k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d 134 (183)
.+..+++.|||+|.|.||+.++|.++.| |+|+++|+.....|.|..+...++.-|+++++. +.+++++|.|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka----~aeV~GlS~D---- 133 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA----GAEVIGLSGD---- 133 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc----CceEEeeccC----
Confidence 4556677799999999999999999987 488888886666667999999999999999875 7899999988
Q ss_pred cHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592 135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
+....++|..+++.+|+.|.++..+ +.+.+|+.
T Consensus 134 ~s~sqKaF~sKqnlPYhLLSDpk~e---~ik~lGa~ 166 (211)
T KOG0855|consen 134 DSASQKAFASKQNLPYHLLSDPKNE---VIKDLGAP 166 (211)
T ss_pred chHHHHHhhhhccCCeeeecCcchh---HHHHhCCC
Confidence 6678899999999999999887766 67777765
No 56
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.20 E-value=1.2e-10 Score=79.42 Aligned_cols=56 Identities=9% Similarity=0.177 Sum_probs=45.5
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
.+||++||+||++||++ |+.++|.|+++++++ . ++.++.|+.|. + +...+++++++
T Consensus 13 ~~~k~vvv~F~a~wC~~-C~~~~p~l~~la~~~--~----~v~~~~vd~d~---~-~~~~~l~~~~~ 68 (103)
T cd02985 13 AKGRLVVLEFALKHSGP-SVKIYPTMVKLSRTC--N----DVVFLLVNGDE---N-DSTMELCRREK 68 (103)
T ss_pred cCCCEEEEEEECCCCHh-HHHHhHHHHHHHHHC--C----CCEEEEEECCC---C-hHHHHHHHHcC
Confidence 46899999999999998 999999999999987 2 68888888873 2 23456666666
No 57
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.09 E-value=2.1e-10 Score=77.90 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=38.1
Q ss_pred CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 79 EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 79 ~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++++||+++|+||++||++ |+.++|.+.+++++++ ++.++.|..|
T Consensus 14 ~~~~g~~vlV~F~a~WC~~-C~~~~p~l~~la~~~~------~~~~~~vd~~ 58 (100)
T cd02999 14 AFNREDYTAVLFYASWCPF-SASFRPHFNALSSMFP------QIRHLAIEES 58 (100)
T ss_pred HhcCCCEEEEEEECCCCHH-HHhHhHHHHHHHHHhc------cCceEEEECC
Confidence 3578999999999999998 9999999999999874 4667776543
No 58
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.09 E-value=9.2e-11 Score=84.69 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=46.3
Q ss_pred EEcCCCCeeecCc--cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 68 LVDCNNKPVKSED--FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 68 l~d~~G~~v~l~~--~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
+++.+++...+++ .+||++||+||++||++ |+.++|.+.++++++.+ ++.|+.|++|.
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~-C~~~~p~l~~l~~~~~~-----~~~~v~v~vd~ 62 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTV-CQEMAPDVAKLKQKYGD-----QVNFVMLNVDN 62 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEECCcCHH-HHHhHHHHHHHHHHhcc-----CeeEEEEEcCC
Confidence 4445555555444 37899999999999998 99999999999998753 58899999883
No 59
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.04 E-value=7.5e-10 Score=75.34 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=46.1
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGL 153 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l 153 (183)
.|++++|+||++||++ |+..+|.+.++++++++. .+.++.++.| .++.+++|.-+.-|.+.++
T Consensus 16 ~~~~vvv~F~a~wC~~-Ck~~~p~l~~~~~~~~~~----~~~~~~vd~d----~~~~~~~~~v~~~Pt~~~~ 78 (102)
T cd02948 16 NKGLTVVDVYQEWCGP-CKAVVSLFKKIKNELGDD----LLHFATAEAD----TIDTLKRYRGKCEPTFLFY 78 (102)
T ss_pred cCCeEEEEEECCcCHh-HHHHhHHHHHHHHHcCCC----cEEEEEEeCC----CHHHHHHcCCCcCcEEEEE
Confidence 5899999999999998 999999999999987643 5777888776 3444444433333444443
No 60
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.9e-09 Score=73.30 Aligned_cols=108 Identities=22% Similarity=0.255 Sum_probs=90.3
Q ss_pred cCCCcccCCCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc
Q psy17592 56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT 135 (183)
Q Consensus 56 ~~~~~~~~p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~ 135 (183)
.+..++.+|+|++.+.+.+.++++++.||..+|+...+--.++|..+...+.+...++. ++.++.||.| .
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~------~~~Vl~IS~D----L 86 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG------NTVVLCISMD----L 86 (158)
T ss_pred CCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC------CcEEEEEeCC----C
Confidence 34566677999999999999999999999999998888888899999999999888754 6899999987 8
Q ss_pred HHHHHHHHHHhCCC-eEEecCCHHHHHHHHhhcCeeEeeCC
Q psy17592 136 PELVGKYVKEFSPK-FIGLTGTVEQVAAACKAYRVYFSAGP 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~gv~~~~~~ 175 (183)
|-..++|+..+|.+ ...+++- ....+.++||+.+.+.+
T Consensus 87 PFAq~RfC~aeGi~nv~~lSd~--r~~~Fge~yGv~I~egp 125 (158)
T COG2077 87 PFAQKRFCGAEGIENVITLSDF--RDRAFGENYGVLINEGP 125 (158)
T ss_pred hhHHhhhhhhcCcccceEhhhh--hhhhhhHhhCEEecccc
Confidence 89999999999965 5555432 33458999999988764
No 61
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.98 E-value=2.5e-09 Score=77.94 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=43.5
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~ 142 (183)
++++++|+||++||++ |+...|.+.++.+++... +++++.|++| +.++..++|
T Consensus 46 ~~~~vvV~Fya~wC~~-Ck~l~p~l~~la~~~~~~----~v~f~~VDvd---~~~~la~~~ 98 (152)
T cd02962 46 KRVTWLVEFFTTWSPE-CVNFAPVFAELSLKYNNN----NLKFGKIDIG---RFPNVAEKF 98 (152)
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHcccC----CeEEEEEECC---CCHHHHHHc
Confidence 4679999999999998 999999999999987643 6999999988 344444444
No 62
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.95 E-value=5.7e-10 Score=88.75 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=45.1
Q ss_pred CeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 74 KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 74 ~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
+...+++++|+++||+||++||++ |+.++|.|+++++++ ++.|+.|++|.
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~-C~~~~P~L~~la~~y-------g~~Vi~VsvD~ 206 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPY-CHQQAPILQAFEDRY-------GIEVLPVSVDG 206 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCcc-HHHHhHHHHHHHHHc-------CcEEEEEeCCC
Confidence 346788899999999999999998 999999999999986 58899999984
No 63
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.94 E-value=3e-09 Score=73.68 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=38.3
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.++++||+|||+||++ |+...|.|.++..++.+ .+.++-|++|
T Consensus 13 ~~~~vVV~F~A~WCgp-Ck~m~P~le~la~~~~~-----~v~f~kVDvD 55 (114)
T cd02954 13 EEKVVVIRFGRDWDPV-CMQMDEVLAKIAEDVSN-----FAVIYLVDID 55 (114)
T ss_pred CCCEEEEEEECCCChh-HHHHHHHHHHHHHHccC-----ceEEEEEECC
Confidence 4689999999999999 99999999999998753 4788999888
No 64
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.93 E-value=2e-08 Score=68.91 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=69.3
Q ss_pred CeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcHHHHH
Q psy17592 65 KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTPELVG 140 (183)
Q Consensus 65 ~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~~~~~ 140 (183)
+|++.|.+|+.+++++++||++||.=.||.|+. =. ....|++|+++++++ +++|+++-.+- +.++.++++
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~-t~-qy~~L~~L~~ky~~~----gl~ILaFPcnqFg~QEp~~~~ei~ 76 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGY-TK-QYKQLNELYEKYKDK----GLEILAFPCNQFGNQEPGSNEEIK 76 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTT-HH-HHHHHHHHHHHHGGG----TEEEEEEEBSTTTTTTSSCHHHHH
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCC-cc-ccHHHHHHHHHHhcC----CeEEEeeehHHhccccCCCHHHHH
Confidence 689999999999999999999988888999996 55 899999999999876 89999996652 225678888
Q ss_pred HHHHH-hCCCeEEe
Q psy17592 141 KYVKE-FSPKFIGL 153 (183)
Q Consensus 141 ~~~~~-~~~~~~~l 153 (183)
+|+.. ++..|+..
T Consensus 77 ~~~~~~~~~~F~vf 90 (108)
T PF00255_consen 77 EFCKEKFGVTFPVF 90 (108)
T ss_dssp HHHCHCHT-SSEEB
T ss_pred HHHHhccCCcccce
Confidence 88888 67777663
No 65
>KOG0910|consensus
Probab=98.90 E-value=2.5e-09 Score=76.63 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=45.7
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHH
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKE 145 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~ 145 (183)
.++||||.|||+||.| |+...|.|+++..++.. .+.+.-|++| +.++...+|--.
T Consensus 60 S~~PVlVdF~A~WCgP-Ck~l~P~l~~~~~~~~g-----~~k~~kvdtD---~~~ela~~Y~I~ 114 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGP-CKMLGPILEELVSEYAG-----KFKLYKVDTD---EHPELAEDYEIS 114 (150)
T ss_pred cCCCEEEEEecCcCcc-HhHhhHHHHHHHHhhcC-----eEEEEEEccc---cccchHhhccee
Confidence 4689999999999999 99999999999999854 5999999998 455655555443
No 66
>KOG0852|consensus
Probab=98.89 E-value=6.2e-09 Score=76.02 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=84.7
Q ss_pred CCeEEE---cCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH
Q psy17592 64 GKFELV---DCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG 140 (183)
Q Consensus 64 p~f~l~---d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~ 140 (183)
|+|.-+ |-.-+.++|++++||+|++.|+.-.-..+|+.|+-.+...+.++++. +-+++++|+| +.....
T Consensus 11 p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~----n~eVig~S~D----S~fshl 82 (196)
T KOG0852|consen 11 PDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL----NTEVLGISTD----SVFSHL 82 (196)
T ss_pred CCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc----CCeEEEEecc----chhhhh
Confidence 677644 33446789999999999999998888889999999999999999977 8999999998 445555
Q ss_pred HHHHH---h-C---CCeEEecCCHHHHHHHHhhcCeeEeeCCCCCCCCCC
Q psy17592 141 KYVKE---F-S---PKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183 (183)
Q Consensus 141 ~~~~~---~-~---~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~ 183 (183)
+|... . | .+++.+.+...+ +++.||+..+..+.+=++.||
T Consensus 83 AW~ntprk~gGlg~~~iPllsD~~~~---IsrdyGvL~~~~G~~lRglfI 129 (196)
T KOG0852|consen 83 AWINTPRKQGGLGPLNIPLLSDLNHE---ISRDYGVLKEDEGIALRGLFI 129 (196)
T ss_pred hHhcCchhhCCcCccccceeeccchh---hHHhcCceecCCCcceeeeEE
Confidence 55432 2 2 568888776555 999999998887765555543
No 67
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.88 E-value=3e-09 Score=73.50 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=39.7
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+|++++|+||++||++ |+...|.+.++.+++++. ++.+..|+.|
T Consensus 22 ~~~~~vlV~F~a~wC~~-C~~~~p~~~~l~~~~~~~----~v~~~~vd~d 66 (111)
T cd02963 22 SFKKPYLIKITSDWCFS-CIHIEPVWKEVIQELEPL----GVGIATVNAG 66 (111)
T ss_pred cCCCeEEEEEECCccHh-HHHhhHHHHHHHHHHHhc----CceEEEEecc
Confidence 46899999999999998 999999999999998743 5888888777
No 68
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.83 E-value=7.6e-09 Score=70.02 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=38.5
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+++++|+||++||++ |+...|.+.++.++++. .+.+..|+.|
T Consensus 17 ~~~~~~v~f~a~wC~~-C~~~~p~~~~~a~~~~~-----~~~~~~vd~~ 59 (101)
T cd03003 17 SGEIWFVNFYSPRCSH-CHDLAPTWREFAKEMDG-----VIRIGAVNCG 59 (101)
T ss_pred CCCeEEEEEECCCChH-HHHhHHHHHHHHHHhcC-----ceEEEEEeCC
Confidence 5689999999999998 99999999999998853 5888888888
No 69
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.83 E-value=1.4e-08 Score=67.93 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=37.7
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+|++++|+||++||++ |+...|.+.++.+.+.+ .+.++.|+.|
T Consensus 11 ~~~~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~-----~~~~~~vd~~ 53 (96)
T cd02956 11 TQVPVVVDFWAPRSPP-SKELLPLLERLAEEYQG-----QFVLAKVNCD 53 (96)
T ss_pred CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhCC-----cEEEEEEecc
Confidence 5789999999999998 99999999999998753 4777888777
No 70
>KOG0907|consensus
Probab=98.82 E-value=1.3e-08 Score=69.70 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=47.9
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC----CCeEEe
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS----PKFIGL 153 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~----~~~~~l 153 (183)
.+|.++|+|.++||+| |+...|.+.+|..+|. ++.|+-|++| + ....+++++ |.|.++
T Consensus 20 ~~kliVvdF~a~wCgP-Ck~i~P~~~~La~~y~------~v~Flkvdvd---e----~~~~~~~~~V~~~PTf~f~ 81 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGP-CKAIAPKFEKLAEKYP------DVVFLKVDVD---E----LEEVAKEFNVKAMPTFVFY 81 (106)
T ss_pred CCCeEEEEEECCCCcc-hhhhhhHHHHHHHHCC------CCEEEEEecc---c----CHhHHHhcCceEeeEEEEE
Confidence 3699999999999999 9999999999999975 5899999998 2 666677776 455554
No 71
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.78 E-value=2.4e-08 Score=68.90 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=38.2
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+|+|+|.|+++||++ |+..-|.|.++.+++.+ .+.|+-|.+|
T Consensus 13 ~~klVVVdF~a~WC~p-Ck~mdp~l~ela~~~~~-----~~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAV-CLQLDDILSKTSHDLSK-----MASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChh-HHHHHHHHHHHHHHccC-----ceEEEEEecc
Confidence 5899999999999999 99999999999999852 2788888887
No 72
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.4e-08 Score=71.61 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=68.4
Q ss_pred CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcHHHH
Q psy17592 64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTPELV 139 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~~~~ 139 (183)
-+|++++.+|++++|++++||++||.=.||.|+- ..+-..|+.|+++|+++ ++.|++.-.+- +..+.+++
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGf--TpQYegLe~Ly~ky~~~----Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGF--TPQYEGLEALYKKYKDK----GFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCC--cHhHHHHHHHHHHHhhC----CcEEEeccccccccCCCCCHHHH
Confidence 4899999999999999999999988888999996 44788999999999987 89999996651 12466788
Q ss_pred HHHHHH-hCCCeEE
Q psy17592 140 GKYVKE-FSPKFIG 152 (183)
Q Consensus 140 ~~~~~~-~~~~~~~ 152 (183)
++|.+. +|..|++
T Consensus 80 ~~fC~~~YgVtFp~ 93 (162)
T COG0386 80 AKFCQLNYGVTFPM 93 (162)
T ss_pred HHHHHhccCceeee
Confidence 888775 4666665
No 73
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.76 E-value=2.1e-08 Score=68.33 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=38.0
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++++++|+||++||++ |+..+|.+.+++++++.. ..++.+..+..+
T Consensus 14 ~~~~vlv~f~a~wC~~-C~~~~p~l~~l~~~~~~~--~~~~~~~~vd~~ 59 (104)
T cd03000 14 KEDIWLVDFYAPWCGH-CKKLEPVWNEVGAELKSS--GSPVRVGKLDAT 59 (104)
T ss_pred cCCeEEEEEECCCCHH-HHhhChHHHHHHHHHHhc--CCcEEEEEEECc
Confidence 4679999999999998 999999999999998654 234777777665
No 74
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.76 E-value=2.8e-08 Score=71.42 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=41.8
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK 141 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~ 141 (183)
.+++|||.|||+||++ |+...|.|.++.+++.+ .+.|+-|.+| +.++....
T Consensus 22 ~~~lVVvdF~A~WCgp-Ck~m~p~l~~la~~~~~-----~~~~~kVDVD---e~~dla~~ 72 (142)
T PLN00410 22 EERLVVIRFGHDWDET-CMQMDEVLASVAETIKN-----FAVIYLVDIT---EVPDFNTM 72 (142)
T ss_pred CCCEEEEEEECCCChh-HHHHHHHHHHHHHHcCC-----ceEEEEEECC---CCHHHHHH
Confidence 4689999999999999 99999999999998753 4788889988 44444333
No 75
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.75 E-value=8.7e-09 Score=71.96 Aligned_cols=81 Identities=11% Similarity=0.123 Sum_probs=50.0
Q ss_pred CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC---CCeEEecC
Q psy17592 79 EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS---PKFIGLTG 155 (183)
Q Consensus 79 ~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~---~~~~~l~~ 155 (183)
+..+||++||+||++||++ |+...|.+.+....... ...++.|.+|...+ ...+.| ...+ |.+.++..
T Consensus 15 A~~~~kpVlV~F~a~WC~~-C~~~~~~~~~~~~~~~~-----~~~fv~v~vd~~~~--~~~~~~-~~~g~~vPt~~f~~~ 85 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGA-CKALKPKFAESKEISEL-----SHNFVMVNLEDDEE--PKDEEF-SPDGGYIPRILFLDP 85 (117)
T ss_pred HHHcCCcEEEEEeCCcCHH-HHHHHHHHhhhHHHHhh-----cCcEEEEEecCCCC--chhhhc-ccCCCccceEEEECC
Confidence 3346899999999999998 99999999997665432 34567777774222 122233 2222 33444444
Q ss_pred CHHHHHHHHhhcC
Q psy17592 156 TVEQVAAACKAYR 168 (183)
Q Consensus 156 ~~~~~~~~~~~~g 168 (183)
+.+.+.++...+|
T Consensus 86 ~Gk~~~~~~~~~~ 98 (117)
T cd02959 86 SGDVHPEIINKKG 98 (117)
T ss_pred CCCCchhhccCCC
Confidence 5445444544444
No 76
>PHA02278 thioredoxin-like protein
Probab=98.74 E-value=2.9e-08 Score=67.72 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=37.7
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
+++++||+|||+||++ |+...|.+.++.+++.. ++.++.|++|.
T Consensus 13 ~~~~vvV~F~A~WCgp-Ck~m~p~l~~l~~~~~~-----~~~~~~vdvd~ 56 (103)
T PHA02278 13 QKKDVIVMITQDNCGK-CEILKSVIPMFQESGDI-----KKPILTLNLDA 56 (103)
T ss_pred CCCcEEEEEECCCCHH-HHhHHHHHHHHHhhhcC-----CceEEEEECCc
Confidence 5789999999999999 99999999999876432 46788888884
No 77
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.74 E-value=2.4e-08 Score=67.43 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=36.4
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++|+ ++|+||++||++ |+...|.+.++++.++.. ++.+..|..|
T Consensus 15 ~~~~-~lv~f~a~wC~~-C~~~~p~~~~l~~~~~~~----~v~~~~vd~~ 58 (101)
T cd02994 15 LEGE-WMIEFYAPWCPA-CQQLQPEWEEFADWSDDL----GINVAKVDVT 58 (101)
T ss_pred hCCC-EEEEEECCCCHH-HHHHhHHHHHHHHhhccC----CeEEEEEEcc
Confidence 3566 579999999998 999999999999876532 6888888776
No 78
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.71 E-value=5.6e-08 Score=66.09 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=42.1
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
.||++||+||++||++ |+...+.+ .++.+.+++ ++.++.|.++. +.+....++++++
T Consensus 10 ~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~-----~~~~~~vd~~~---~~~~~~~~~~~~~ 69 (104)
T cd02953 10 QGKPVFVDFTADWCVT-CKVNEKVVFSDPEVQAALKK-----DVVLLRADWTK---NDPEITALLKRFG 69 (104)
T ss_pred cCCeEEEEEEcchhHH-HHHHHHHhcCCHHHHHHHhC-----CeEEEEEecCC---CCHHHHHHHHHcC
Confidence 5799999999999998 99999887 567776642 57888887762 2233456666665
No 79
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.69 E-value=5.2e-08 Score=67.58 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=37.9
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.++++||.||++||++ |+...|.+.++.+++++ .+.+..|+.|
T Consensus 28 ~~~~vlV~FyA~WC~~-Ck~l~p~~~~la~~~~~-----~v~~~~Vd~d 70 (113)
T cd03006 28 DAEVSLVMYYAPWDAQ-SQAARQEFEQVAQKLSD-----QVLFVAINCW 70 (113)
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhcC-----CeEEEEEECC
Confidence 5689999999999998 99999999999999853 4788888877
No 80
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.69 E-value=5.9e-08 Score=66.71 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=39.8
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
+||+++|.||++||++ |+...|.+.++.+.+++. ++.+..|..|.
T Consensus 20 ~~k~vlv~f~a~wC~~-C~~~~~~~~~la~~~~~~----~~~~~~vd~d~ 64 (109)
T cd02993 20 RNQSTLVVLYAPWCPF-CQAMEASYEELAEKLAGS----NVKVAKFNADG 64 (109)
T ss_pred cCCCEEEEEECCCCHH-HHHHhHHHHHHHHHhccC----CeEEEEEECCc
Confidence 5799999999999998 999999999999998743 68888888873
No 81
>PRK09381 trxA thioredoxin; Provisional
Probab=98.68 E-value=4.9e-08 Score=66.88 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=38.4
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+++++|+||++|||+ |+...|.++++.+++.. ++.+..|+.|
T Consensus 20 ~~~~vvv~f~~~~C~~-C~~~~p~~~~l~~~~~~-----~~~~~~vd~~ 62 (109)
T PRK09381 20 ADGAILVDFWAEWCGP-CKMIAPILDEIADEYQG-----KLTVAKLNID 62 (109)
T ss_pred CCCeEEEEEECCCCHH-HHHHhHHHHHHHHHhCC-----CcEEEEEECC
Confidence 3789999999999998 99999999999998753 5888889887
No 82
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.64 E-value=5.1e-08 Score=65.68 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=36.5
Q ss_pred EEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 85 WALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 85 ~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+++|+||++||++ |+..+|.+.+++++++.. ...+.++.|..|
T Consensus 18 ~~lv~f~a~wC~~-C~~~~p~~~~~~~~~~~~--~~~~~~~~vd~~ 60 (102)
T cd03005 18 NHFVKFFAPWCGH-CKRLAPTWEQLAKKFNNE--NPSVKIAKVDCT 60 (102)
T ss_pred CEEEEEECCCCHH-HHHhCHHHHHHHHHHhcc--CCcEEEEEEECC
Confidence 5999999999998 999999999999998752 236888888776
No 83
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.5e-08 Score=78.90 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=39.3
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+-+||||+||++||++ |...+|.|.++..+++. .+.+.-|++|
T Consensus 41 S~~~PVlV~fWap~~~~-c~qL~p~Lekla~~~~G-----~f~LakvN~D 84 (304)
T COG3118 41 SREVPVLVDFWAPWCGP-CKQLTPTLEKLAAEYKG-----KFKLAKVNCD 84 (304)
T ss_pred ccCCCeEEEecCCCCch-HHHHHHHHHHHHHHhCC-----ceEEEEecCC
Confidence 35679999999999998 99999999999999864 5888888888
No 84
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.62 E-value=8.7e-08 Score=65.45 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=38.4
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
.|++++|+||++||++ |+...|.+.++.+++.. .+.++.|+.|.
T Consensus 17 ~~~~~lv~f~a~wC~~-C~~~~~~~~~~a~~~~~-----~~~~~~v~~~~ 60 (109)
T cd03002 17 TNYTTLVEFYAPWCGH-CKNLKPEYAKAAKELDG-----LVQVAAVDCDE 60 (109)
T ss_pred CCCeEEEEEECCCCHH-HHhhChHHHHHHHHhcC-----CceEEEEecCc
Confidence 4789999999999998 99999999999998753 58888888873
No 85
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.62 E-value=1.3e-07 Score=64.24 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=37.5
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+++++|+||++||++ |+...|.+.++.+++.. .+.+..|+.|
T Consensus 18 ~~~~v~v~f~a~wC~~-C~~~~p~~~~~~~~~~~-----~~~~~~vd~~ 60 (104)
T cd03004 18 RKEPWLVDFYAPWCGP-CQALLPELRKAARALKG-----KVKVGSVDCQ 60 (104)
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhcC-----CcEEEEEECC
Confidence 4679999999999998 99999999999998742 5888888877
No 86
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.60 E-value=8.9e-08 Score=65.56 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=37.9
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCC-CCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP-NVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~-~~~~v~~v~Is~d 130 (183)
.+++++|+||++||++ |+...|.++++++.+++.. ..+.+.+..|..|
T Consensus 17 ~~~~vlv~F~a~wC~~-C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d 65 (108)
T cd02996 17 SAELVLVNFYADWCRF-SQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD 65 (108)
T ss_pred cCCEEEEEEECCCCHH-HHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC
Confidence 4689999999999998 9999999999998875431 0124777777777
No 87
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.58 E-value=2.5e-07 Score=65.05 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=45.8
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC----CcHHHHHHHHHHhC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER----DTPELVGKYVKEFS 147 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~----d~~~~~~~~~~~~~ 147 (183)
.|+.++|+|+++|||+ |+...|.|.++.++. ++.+..|++|... .+.+.+.+|.+.++
T Consensus 22 ~~~~~iv~f~~~~Cp~-C~~~~P~l~~~~~~~-------~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 22 KKETATFFIGRKTCPY-CRKFSGTLSGVVAQT-------KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cCCcEEEEEECCCChh-HHHHhHHHHHHHHhc-------CCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 4788999999999998 999999999998872 4678888887321 22346778888775
No 88
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.57 E-value=2.7e-07 Score=62.02 Aligned_cols=43 Identities=19% Similarity=0.420 Sum_probs=37.4
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+++++++||++||+. |....|.+.++.+++.+ ++.++.|+.|
T Consensus 12 ~~~~vlv~f~a~~C~~-C~~~~~~l~~l~~~~~~-----~v~~~~id~d 54 (97)
T cd02949 12 SDRLILVLYTSPTCGP-CRTLKPILNKVIDEFDG-----AVHFVEIDID 54 (97)
T ss_pred CCCeEEEEEECCCChh-HHHHHHHHHHHHHHhCC-----ceEEEEEECC
Confidence 4689999999999997 99999999999988742 5888888876
No 89
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.56 E-value=1.1e-07 Score=66.46 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=39.0
Q ss_pred CCCEEEEEEEc-------CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 82 LGKWALIYFGF-------THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 82 ~gk~vll~f~~-------t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
+|++++|+||| +|||+ |+...|.|.++..++.. ++.++-|.+|.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~p-Cr~~~P~l~~l~~~~~~-----~v~fv~Vdvd~ 70 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPD-CVKAEPVVREALKAAPE-----DCVFIYCDVGD 70 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHh-HHhhchhHHHHHHHCCC-----CCEEEEEEcCC
Confidence 58999999999 99998 99999999999998752 58899999873
No 90
>PTZ00051 thioredoxin; Provisional
Probab=98.55 E-value=2.1e-07 Score=62.35 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=35.9
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+++++|+||++||++ |+...+.+.++.+++. ++.++.|+.|
T Consensus 17 ~~~~vli~f~~~~C~~-C~~~~~~l~~l~~~~~------~~~~~~vd~~ 58 (98)
T PTZ00051 17 QNELVIVDFYAEWCGP-CKRIAPFYEECSKEYT------KMVFVKVDVD 58 (98)
T ss_pred cCCeEEEEEECCCCHH-HHHHhHHHHHHHHHcC------CcEEEEEECc
Confidence 4789999999999998 9999999999998642 5777777766
No 91
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.55 E-value=3.1e-07 Score=63.78 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=36.9
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+++++|+||++||++ |+...|.++++.+++++. .+.+.+..|+.+
T Consensus 19 ~~~vvV~f~a~wC~~-C~~~~~~~~~la~~~~~~--~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGH-CRAFAPTWKKLARDLRKW--RPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHH-HHHHhHHHHHHHHHHHhc--CCceEEEEEecc
Confidence 479999999999998 999999999999988653 234777666654
No 92
>PRK10996 thioredoxin 2; Provisional
Probab=98.54 E-value=2.6e-07 Score=66.37 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=37.2
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+|+++|+||++||++ |+...|.+.++++++.. ++.++.|..|
T Consensus 51 ~~k~vvv~F~a~wC~~-C~~~~~~l~~l~~~~~~-----~v~~~~vd~~ 93 (139)
T PRK10996 51 DDLPVVIDFWAPWCGP-CRNFAPIFEDVAAERSG-----KVRFVKVNTE 93 (139)
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhCC-----CeEEEEEeCC
Confidence 4799999999999998 99999999999987643 5788788776
No 93
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.53 E-value=2.3e-07 Score=65.22 Aligned_cols=44 Identities=27% Similarity=0.440 Sum_probs=35.4
Q ss_pred CC-CEEEEEEEcCCCCCCcHHHHHHHH---HHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 82 LG-KWALIYFGFTHCPDICPDELEKMA---AVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 82 ~g-k~vll~f~~t~C~~~C~~~~~~l~---~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
.| |+++|+||++||++ |+...+.+. ++.+.+.+ ++.++.|++|.
T Consensus 12 ~~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~d~ 59 (125)
T cd02951 12 DGKKPLLLLFSQPGCPY-CDKLKRDYLNDPAVQAYIRA-----HFVVVYINIDG 59 (125)
T ss_pred cCCCcEEEEEeCCCCHH-HHHHHHHhcCcHHHHHHHHh-----heEEEEEEccC
Confidence 57 99999999999998 999999885 55555542 58888888873
No 94
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.51 E-value=2.6e-07 Score=62.39 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=37.3
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++++++|+||++||++ |+...|.++++.+.+.+. ..+.++.|..+
T Consensus 16 ~~~~~~v~f~a~wC~~-C~~~~~~~~~~~~~~~~~---~~~~~~~id~~ 60 (104)
T cd02997 16 KEKHVLVMFYAPWCGH-CKKMKPEFTKAATELKED---GKGVLAAVDCT 60 (104)
T ss_pred hCCCEEEEEECCCCHH-HHHhCHHHHHHHHHHhhC---CceEEEEEECC
Confidence 5679999999999998 999999999999988643 25666666665
No 95
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.50 E-value=4.1e-07 Score=60.75 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=35.9
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+++++|+||++||++ |+...+.|.++.+++. .++.++.|..+
T Consensus 14 ~~~v~v~f~~~~C~~-C~~~~~~l~~l~~~~~-----~~i~~~~vd~~ 55 (97)
T cd02984 14 SKLLVLHFWAPWAEP-CKQMNQVFEELAKEAF-----PSVLFLSIEAE 55 (97)
T ss_pred CCEEEEEEECCCCHH-HHHHhHHHHHHHHHhC-----CceEEEEEccc
Confidence 699999999999998 9999999999998862 26777777655
No 96
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.49 E-value=2e-07 Score=62.90 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=37.7
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+++++|+||++||++ |+...|.+.++.+.+++. .++.+..|+.+
T Consensus 18 ~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~---~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFYAPWCGH-CKALAPIYEELAEKLKGD---DNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEECCCCHH-HHHHhhHHHHHHHHhcCC---CCEEEEEEeCc
Confidence 589999999999998 999999999999988652 25777777766
No 97
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.48 E-value=6.5e-07 Score=61.92 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=35.5
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+++++|+||++||++ |+...|.++++.+++. ++.++-|..|
T Consensus 24 ~~~vvv~F~a~~c~~-C~~l~~~l~~la~~~~------~v~f~~vd~~ 64 (113)
T cd02957 24 GTRVVVHFYEPGFPR-CKILDSHLEELAAKYP------ETKFVKINAE 64 (113)
T ss_pred CCEEEEEEeCCCCCc-HHHHHHHHHHHHHHCC------CcEEEEEEch
Confidence 589999999999998 9999999999998863 5777777665
No 98
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.46 E-value=9.3e-07 Score=61.27 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=36.6
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+++++|+||++||++ |+...|.|.++.+++. ++.++-|..|
T Consensus 21 ~~~~vvV~f~a~~c~~-C~~~~p~l~~la~~~~------~i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFR-CKIMDKHLEILAKKHL------ETKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCcc-HHHHHHHHHHHHHHcC------CCEEEEEEcc
Confidence 4689999999999998 9999999999998763 5788888877
No 99
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.45 E-value=2.8e-07 Score=61.83 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=37.8
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++++++|+||++||+. |+...+.++++.+.++.. +++.+..+..|
T Consensus 12 ~~~~~~i~f~~~~C~~-c~~~~~~~~~~~~~~~~~---~~~~~~~~d~~ 56 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGH-CKNLAPEYEKLAKELKGD---PDIVLAKVDAT 56 (102)
T ss_pred cCCcEEEEEECCCCHH-HHhhChHHHHHHHHhccC---CceEEEEEEcc
Confidence 6899999999999998 999999999999888643 24777777665
No 100
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.41 E-value=6.3e-07 Score=60.42 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=37.7
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+++++|.||++||++ |+...|.+.++.++++.. +++.++.|..+
T Consensus 17 ~~~~~~v~f~a~~C~~-C~~~~~~~~~~~~~~~~~---~~~~~~~id~~ 61 (105)
T cd02998 17 DKKDVLVEFYAPWCGH-CKNLAPEYEKLAAVFANE---DDVVIAKVDAD 61 (105)
T ss_pred CCCcEEEEEECCCCHH-HHhhChHHHHHHHHhCCC---CCEEEEEEECC
Confidence 3579999999999998 999999999999998632 36777777766
No 101
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.36 E-value=1.1e-06 Score=59.12 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=36.4
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+++++|.||++||++ |+...|.+.++.+++.. .+.+..+..|
T Consensus 18 ~~~vlv~f~a~~C~~-C~~~~~~~~~~~~~~~~-----~~~~~~id~~ 59 (103)
T cd03001 18 DDVWLVEFYAPWCGH-CKNLAPEWKKAAKALKG-----IVKVGAVDAD 59 (103)
T ss_pred CCcEEEEEECCCCHH-HHHHhHHHHHHHHHhcC-----CceEEEEECc
Confidence 567999999999998 99999999999988753 5788888776
No 102
>KOG0854|consensus
Probab=98.35 E-value=2.2e-06 Score=62.97 Aligned_cols=103 Identities=19% Similarity=0.285 Sum_probs=75.6
Q ss_pred CCcccCCCeEEEcCCCCeeecCccCC-CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCc-
Q psy17592 58 GKVAIGGKFELVDCNNKPVKSEDFLG-KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDT- 135 (183)
Q Consensus 58 ~~~~~~p~f~l~d~~G~~v~l~~~~g-k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~- 135 (183)
.-++..|+|+..+..|+ +.+.|+.| .|.+|+=....-.++|..|+..+..++-++.++ ++..+++|+|...+.
T Consensus 7 ~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR----nvKlialS~d~vesH~ 81 (224)
T KOG0854|consen 7 RLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR----NVKLIALSVDDVESHK 81 (224)
T ss_pred cccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc----CceEEEeehhhHHHHH
Confidence 34556799999988886 78899876 698888777777778999999999999999877 899999999832211
Q ss_pred --HHHHHHHHHHhC--CCeEEecCCHHHHHHHHhhcC
Q psy17592 136 --PELVGKYVKEFS--PKFIGLTGTVEQVAAACKAYR 168 (183)
Q Consensus 136 --~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~g 168 (183)
.+.++.|.+..+ .+|+.+.++..+ ++-.||
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~~re---la~~l~ 115 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADPNRE---LAFLLN 115 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCCchh---hhhhhc
Confidence 123333444444 678888777665 444444
No 103
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.34 E-value=1.8e-06 Score=59.76 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=39.3
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~ 142 (183)
+++.++|+||++||++ |+...|.|.++.+.+ +.+++..|..| +.++...+|
T Consensus 21 ~~~~vvv~f~a~wC~~-C~~~~~~l~~la~~~------~~i~~~~vd~d---~~~~l~~~~ 71 (113)
T cd02975 21 NPVDLVVFSSKEGCQY-CEVTKQLLEELSELS------DKLKLEIYDFD---EDKEKAEKY 71 (113)
T ss_pred CCeEEEEEeCCCCCCC-hHHHHHHHHHHHHhc------CceEEEEEeCC---cCHHHHHHc
Confidence 3466889999999998 999999999998764 15888888888 344444433
No 104
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.34 E-value=1.9e-06 Score=59.37 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=38.1
Q ss_pred CCCEEEEEEEcCC--CCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTH--CPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~--C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.|.+++|.||++| ||+ |....|.|.++.+++.+ .+.++-|+.|
T Consensus 26 ~~~~~v~~f~~~~~~cp~-c~~i~P~leela~e~~~-----~v~f~kVdid 70 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPE-VLDVAVVLPELLKAFPG-----RFRAAVVGRA 70 (111)
T ss_pred CCCCEEEEecCCcccCcc-hhhhHhHHHHHHHHCCC-----cEEEEEEECC
Confidence 5788999999997 998 99999999999999853 4788888888
No 105
>PTZ00102 disulphide isomerase; Provisional
Probab=98.34 E-value=1.7e-06 Score=73.86 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=37.7
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+++.++|+||++||++ |+...|.+.++.+.+.+. ..++.+..|..+
T Consensus 48 ~~~~~lv~f~a~wC~~-Ck~~~p~~~~~a~~~~~~--~~~i~~~~vd~~ 93 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGH-CKRLAPEYKKAAKMLKEK--KSEIVLASVDAT 93 (477)
T ss_pred cCCcEEEEEECCCCHH-HHHhhHHHHHHHHHHHhc--CCcEEEEEEECC
Confidence 5789999999999998 999999999999887654 335776666655
No 106
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.33 E-value=1.6e-06 Score=57.83 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=37.0
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++.++|+||++||++ |+...+.+.++.+++.+ ++.++.|..|
T Consensus 14 ~~~vvi~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~~~~~~vd~~ 55 (101)
T TIGR01068 14 DKPVLVDFWAPWCGP-CKMIAPILEELAKEYEG-----KVKFVKLNVD 55 (101)
T ss_pred CCcEEEEEECCCCHH-HHHhCHHHHHHHHHhcC-----CeEEEEEECC
Confidence 579999999999998 99999999999987743 5888888877
No 107
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.30 E-value=1.6e-06 Score=58.10 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=38.0
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.++++||.|++.||++ |....|.+.++.+++.+ ++.++.|..+
T Consensus 16 ~~~~vvv~f~~~~C~~-C~~~~~~~~~~~~~~~~-----~v~~~~vd~~ 58 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPP-CKAFKPILEKLAKEYKD-----NVKFAKVDCD 58 (103)
T ss_dssp TSSEEEEEEESTTSHH-HHHHHHHHHHHHHHTTT-----TSEEEEEETT
T ss_pred cCCCEEEEEeCCCCCc-cccccceeccccccccc-----ccccchhhhh
Confidence 3699999999999998 99999999999999753 5888888877
No 108
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.28 E-value=1.7e-06 Score=66.92 Aligned_cols=43 Identities=9% Similarity=0.168 Sum_probs=35.7
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+++++|+||++||++ |+...|.++++.+++++ .+.+..|..+
T Consensus 51 ~~~~vlV~FyApWC~~-Ck~~~P~~e~la~~~~~-----~v~~~~VD~~ 93 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSH-CRKMAPAWERLAKALKG-----QVNVADLDAT 93 (224)
T ss_pred CCCCEEEEEECCCChH-HHHHHHHHHHHHHHcCC-----CeEEEEecCc
Confidence 3578999999999998 99999999999998753 4666666555
No 109
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.27 E-value=8.3e-07 Score=60.88 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=46.2
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHH
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVA 161 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~ 161 (183)
+||+++++||.+|||. |+...+.+.+..+-...- .+++.++.++++ +.......+....+..+. .....
T Consensus 4 ~~k~~v~~F~~~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~ 72 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPY-CKKLEKELFPDNDVARYL--KDDFQVIFVNID---DSRDESEAVLDFDGQKNV-----RLSNK 72 (112)
T ss_dssp TSSEEEEEEE-TT-HH-HHHHHHHHHHHHHHHCEE--HCECEEEECESH---SHHHHHHHHHSHTCHSSC-----HHHHH
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHHHHh--hcCeEEEEEecC---Ccccccccccccccchhh-----hHHHH
Confidence 5899999999999998 999888888654421110 125788888887 333333334433322111 12333
Q ss_pred HHHhhcCeeEee
Q psy17592 162 AACKAYRVYFSA 173 (183)
Q Consensus 162 ~~~~~~gv~~~~ 173 (183)
++++.|||...+
T Consensus 73 ~l~~~~~v~gtP 84 (112)
T PF13098_consen 73 ELAQRYGVNGTP 84 (112)
T ss_dssp HHHHHTT--SSS
T ss_pred HHHHHcCCCccC
Confidence 577777766444
No 110
>KOG1651|consensus
Probab=98.27 E-value=3.9e-06 Score=61.05 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC----CCCcHHHH
Q psy17592 64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP----ERDTPELV 139 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp----~~d~~~~~ 139 (183)
-+|+..|.+|+.++++.++||++||.=.||-|+. =...-..|..|+++|+++ +++|++.-.+- +..+-+++
T Consensus 15 ydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~-T~~~Y~~l~~L~~ky~~~----Gl~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 15 YDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGL-TESQYTELNELYEKYKDQ----GLEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred eeeEEecCCCCCccHHHhCCeEEEEEEccccccc-chhcchhHHHHHHHHhhC----CeEEEEeccccccCcCCCCcHHH
Confidence 5899999999999999999999988888999996 565667999999999977 89999996641 11344667
Q ss_pred HHHHH-HhCCCeEE
Q psy17592 140 GKYVK-EFSPKFIG 152 (183)
Q Consensus 140 ~~~~~-~~~~~~~~ 152 (183)
..|+. .++..|+.
T Consensus 90 ~~f~~~r~~~~f~i 103 (171)
T KOG1651|consen 90 LNFVKVRYGAEFPI 103 (171)
T ss_pred HHHHHhccCCCCcc
Confidence 77774 55666644
No 111
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.25 E-value=1.8e-06 Score=73.34 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=39.7
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+++++||+||++||++ |+...|.+.++.++++.+ ++.|+.|.+|
T Consensus 370 ~~k~VLV~FyApWC~~-Ck~m~P~~eelA~~~~~~----~v~~~kVdvD 413 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPF-CQAMEASYLELAEKLAGS----GVKVAKFRAD 413 (463)
T ss_pred CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhccC----CcEEEEEECC
Confidence 6889999999999998 999999999999998654 5888889888
No 112
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.20 E-value=3.6e-06 Score=62.86 Aligned_cols=41 Identities=7% Similarity=0.055 Sum_probs=36.1
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+++|||+||++||++ |....|.|.++..++. .+.|+-|..|
T Consensus 83 ~~~VVV~Fya~wc~~-Ck~m~~~l~~LA~~~~------~vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPG-CAALNSSLLCLAAEYP------AVKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCch-HHHHHHHHHHHHHHCC------CeEEEEEecc
Confidence 459999999999998 9999999999998863 5888888777
No 113
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.18 E-value=1.7e-06 Score=66.85 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=82.2
Q ss_pred cCCCcccCCCeEEEcCCCCe-eecCcc-C-CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC-
Q psy17592 56 NLGKVAIGGKFELVDCNNKP-VKSEDF-L-GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP- 131 (183)
Q Consensus 56 ~~~~~~~~p~f~l~d~~G~~-v~l~~~-~-gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp- 131 (183)
....+..+||.++.+.+|+. .++-|+ + +||.||||++-.||+ -...+..++++.+++.+. +.++.|-+..
T Consensus 72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPp-F~~~l~~f~~l~~~f~d~-----adFl~VYI~EA 145 (237)
T PF00837_consen 72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPP-FMAKLDAFKRLVEDFSDV-----ADFLIVYIEEA 145 (237)
T ss_pred ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchH-HHHHHHHHHHHHHHhhhh-----hheehhhHhhh
Confidence 33456667999999999998 888888 4 489999999999998 899999999999998753 4555554431
Q ss_pred ----------------CCCcHH---HHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCCCCCC
Q psy17592 132 ----------------ERDTPE---LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKD 179 (183)
Q Consensus 132 ----------------~~d~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~ 179 (183)
++.+.+ .+.+.+.++.+..+.+.++.+. ...++||+..++-..-++
T Consensus 146 HpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN--~~~~~YgA~PeRlyIi~~ 210 (237)
T PF00837_consen 146 HPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDN--NFNKAYGALPERLYIIQD 210 (237)
T ss_pred CcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCC--HHHHHhCCCcceEEEEEC
Confidence 111222 2333444555788888776543 477889988777544433
No 114
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.16 E-value=5.9e-06 Score=54.69 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=37.7
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++++++|.||++||++ |+...+.+.++.+.++. .+++.++.|+.+
T Consensus 14 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~---~~~~~~~~v~~~ 58 (101)
T cd02961 14 DSKDVLVEFYAPWCGH-CKALAPEYEKLAKELKG---DGKVVVAKVDCT 58 (101)
T ss_pred CCCcEEEEEECCCCHH-HHhhhHHHHHHHHHhcc---CCceEEEEeecc
Confidence 4569999999999998 99999999999988851 136888888776
No 115
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.14 E-value=5.4e-06 Score=55.68 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=40.2
Q ss_pred eecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 76 VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.....+++++++++||++|||+ |...+|.+.++.+++.. .+.++.|...
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~l~~~~~~~~~-----~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPP-CRAEAPLLEELAEEYGG-----DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHH-HHhhchhHHHHHHHhcC-----CcEEEEEECC
Confidence 3444455899999999999998 99999999999998753 4778888774
No 116
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.10 E-value=1.4e-05 Score=51.46 Aligned_cols=47 Identities=19% Similarity=0.433 Sum_probs=36.5
Q ss_pred EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592 86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK 141 (183)
Q Consensus 86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~ 141 (183)
.+.-||++||++ |+...+.|.++.++++. .+.++-|+.+ +.++..++
T Consensus 2 ~v~~f~~~~C~~-C~~~~~~l~~l~~~~~~-----~~~~~~vd~~---~~~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPY-CPAAKRVVEEVAKEMGD-----AVEVEYINVM---ENPQKAME 48 (82)
T ss_pred EEEEEECCCCcc-hHHHHHHHHHHHHHhcC-----ceEEEEEeCc---cCHHHHHH
Confidence 467899999998 99999999999988742 4788888876 34444443
No 117
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.10 E-value=5.8e-06 Score=62.61 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=36.8
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++++|||+||++||++ |+...|.|.+++.++. .+.|+-|..|
T Consensus 101 ~~~~VVV~Fya~wc~~-C~~m~~~l~~LA~k~~------~vkFvkI~ad 142 (192)
T cd02988 101 KDTWVVVHLYKDGIPL-CRLLNQHLSELARKFP------DTKFVKIIST 142 (192)
T ss_pred CCCEEEEEEECCCCch-HHHHHHHHHHHHHHCC------CCEEEEEEhH
Confidence 3569999999999998 9999999999999874 5888888776
No 118
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.10 E-value=7.2e-06 Score=71.81 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=40.4
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
.+||+|+|+||++||++ |+...+.. .+++++++ ++.++-|+++. ..+..++++++++
T Consensus 472 ~~gK~VlVdF~A~WC~~-Ck~~e~~~~~~~~v~~~l~------~~~~v~vDvt~---~~~~~~~l~~~~~ 531 (571)
T PRK00293 472 GKGKPVMLDLYADWCVA-CKEFEKYTFSDPQVQQALA------DTVLLQADVTA---NNAEDVALLKHYN 531 (571)
T ss_pred hcCCcEEEEEECCcCHh-HHHHHHHhcCCHHHHHHhc------CCEEEEEECCC---CChhhHHHHHHcC
Confidence 46899999999999998 99877764 55666553 57777777763 2234456666666
No 119
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.08 E-value=1.5e-05 Score=51.61 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=36.0
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+++++|+||++||+. |....+.++++.++ . +++.++.|+.+
T Consensus 10 ~~~~ll~~~~~~C~~-C~~~~~~~~~~~~~--~----~~~~~~~i~~~ 50 (93)
T cd02947 10 AKPVVVDFWAPWCGP-CKAIAPVLEELAEE--Y----PKVKFVKVDVD 50 (93)
T ss_pred CCcEEEEEECCCChh-HHHhhHHHHHHHHH--C----CCceEEEEECC
Confidence 388999999999998 99999999999887 2 26889999887
No 120
>PTZ00102 disulphide isomerase; Provisional
Probab=98.07 E-value=5.6e-06 Score=70.66 Aligned_cols=59 Identities=10% Similarity=-0.011 Sum_probs=44.5
Q ss_pred EEcCCCCeeecC-ccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 68 LVDCNNKPVKSE-DFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 68 l~d~~G~~v~l~-~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+....|+.+... .-.||+++|+||++||++ |+...|.+.++.+.+++. +.+.+..|..|
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~-C~~~~p~~~~~a~~~~~~---~~v~~~~id~~ 418 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGH-CKNLEPVYNELGEKYKDN---DSIIVAKMNGT 418 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHH-HHHHHHHHHHHHHHhccC---CcEEEEEEECC
Confidence 444555554422 125899999999999998 999999999999887653 25777777766
No 121
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.06 E-value=1.1e-05 Score=54.37 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=38.1
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.|+++++.|+++||++ |....+.+.++.+++++ .+.|+.|..|
T Consensus 11 ~~~~~~~~f~~~~~~~-~~~~~~~~~~vA~~~~~-----~v~f~~vd~~ 53 (103)
T cd02982 11 SGKPLLVLFYNKDDSE-SEELRERFKEVAKKFKG-----KLLFVVVDAD 53 (103)
T ss_pred cCCCEEEEEEcCChhh-HHHHHHHHHHHHHHhCC-----eEEEEEEchH
Confidence 3899999999999998 99999999999999863 5888888776
No 122
>PLN02309 5'-adenylylsulfate reductase
Probab=98.03 E-value=1e-05 Score=68.71 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=39.1
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++|++||+||++||++ |+...|.+.++.+++... ++.|..|+.|
T Consensus 364 ~~k~vlV~FyApWC~~-Cq~m~p~~e~LA~~~~~~----~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPF-CQAMEASYEELAEKLAGS----GVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhccC----CeEEEEEECC
Confidence 5899999999999998 999999999999998644 6888888877
No 123
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.00 E-value=5.3e-05 Score=53.37 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=29.1
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
-+||+|+|+|+++||++ |+..-+.. .++.+.+.+ ++.+|-|..|
T Consensus 13 ~~~KpVll~f~a~WC~~-Ck~me~~~f~~~~V~~~l~~-----~fv~VkvD~~ 59 (124)
T cd02955 13 REDKPIFLSIGYSTCHW-CHVMEHESFEDEEVAAILNE-----NFVPIKVDRE 59 (124)
T ss_pred HcCCeEEEEEccCCCHh-HHHHHHHccCCHHHHHHHhC-----CEEEEEEeCC
Confidence 36899999999999998 99876522 244444422 4555555444
No 124
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.96 E-value=2.2e-05 Score=54.97 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=39.8
Q ss_pred CCEEEEEEEcCCCCC-CcH--HHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592 83 GKWALIYFGFTHCPD-ICP--DELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142 (183)
Q Consensus 83 gk~vll~f~~t~C~~-~C~--~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~ 142 (183)
..++|++||++||++ .|+ ...|.|.++..++-+. +++.|.-|++| +.++..++|
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~---~~v~~~kVD~d---~~~~La~~~ 83 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED---KGIGFGLVDSK---KDAKVAKKL 83 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc---CCCEEEEEeCC---CCHHHHHHc
Confidence 358999999999975 599 7778899988887322 26899999988 344444433
No 125
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.95 E-value=1.8e-05 Score=66.99 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=38.8
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++++++|+||++||++ |+...|.+.++.+.+... ..++.++.|..+
T Consensus 17 ~~~~~~v~f~a~wC~~-c~~~~~~~~~~a~~~~~~--~~~v~~~~vd~~ 62 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGH-CKSLAPEYEKAADELKKK--GPPIKLAKVDAT 62 (462)
T ss_pred cCCCEEEEEECCCCHH-HHhhhHHHHHHHHHHhhc--CCceEEEEEECC
Confidence 5788999999999998 999999999999988754 335777777776
No 126
>PTZ00062 glutaredoxin; Provisional
Probab=97.90 E-value=2.2e-05 Score=59.96 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=34.0
Q ss_pred CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
..++++||++|||+ |+...+.|.++.+++. ++.|+-|..|
T Consensus 18 g~~vl~f~a~w~~~-C~~m~~vl~~l~~~~~------~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPE-YEQLMDVCNALVEDFP------SLEFYVVNLA 57 (204)
T ss_pred CcEEEEEeCCCCcc-hHHHHHHHHHHHHHCC------CcEEEEEccc
Confidence 45899999999998 9999999999999864 5777777655
No 127
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.81 E-value=9.5e-05 Score=45.85 Aligned_cols=38 Identities=26% Similarity=0.522 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
-+..|+++|||+ |....+.|.++.... +++.+..|.+|
T Consensus 2 ~v~~f~~~~C~~-C~~~~~~l~~l~~~~------~~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPY-CPDAVQAANRIAALN------PNISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCC-cHHHHHHHHHHHHhC------CceEEEEEEcc
Confidence 367899999998 999999999986642 26888888776
No 128
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.81 E-value=0.00019 Score=54.53 Aligned_cols=108 Identities=16% Similarity=0.231 Sum_probs=79.6
Q ss_pred HhhhcCCCcccCCCeEEEcCCCCeeecCcc-CCCE--EEEEEE-----cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCee
Q psy17592 52 ERRRNLGKVAIGGKFELVDCNNKPVKSEDF-LGKW--ALIYFG-----FTHCPDICPDELEKMAAVVNKIDGQPNVPNIT 123 (183)
Q Consensus 52 ~~~~~~~~~~~~p~f~l~d~~G~~v~l~~~-~gk~--vll~f~-----~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~ 123 (183)
+....++...+..+..+...+|+ ++|.|+ .||- ++-.|. ...||. |...+.++......+... ++.
T Consensus 35 a~RR~LP~v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~g-Cs~~~D~~~g~l~hL~~r----d~t 108 (211)
T PF05988_consen 35 AERRRLPMVEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPG-CSFWADHIDGALRHLHAR----DTT 108 (211)
T ss_pred HHHhhCCCccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCc-hhhhHhhhhhhHHHHHhC----Cce
Confidence 34455666666678899888997 898886 7763 344454 678997 999999997666666654 799
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592 124 PIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS 172 (183)
Q Consensus 124 ~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~ 172 (183)
++.||-. ..+++..|.+..|-.++.++..... +-..||+.+.
T Consensus 109 fa~vSra----P~~~i~afk~rmGW~~pw~Ss~gs~---Fn~D~~~~~~ 150 (211)
T PF05988_consen 109 FAVVSRA----PLEKIEAFKRRMGWTFPWYSSYGSD---FNYDFGVSFD 150 (211)
T ss_pred EEEEeCC----CHHHHHHHHHhcCCCceEEEcCCCc---ccccccceec
Confidence 9999966 6899999999999888777654332 5555666543
No 129
>PHA02125 thioredoxin-like protein
Probab=97.81 E-value=3.7e-05 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHH
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAV 109 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l 109 (183)
+++|+++||++ |+...|.|.++
T Consensus 2 iv~f~a~wC~~-Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCAN-CKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHh-HHHHHHHHHHH
Confidence 78999999998 99999988654
No 130
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.81 E-value=7.4e-05 Score=47.93 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEE
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFI 127 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~I 127 (183)
.|.||++|||+ |....|.++++.+++.. .+.++-|
T Consensus 2 ~i~~~a~~C~~-C~~~~~~~~~~~~e~~~-----~~~~~~v 36 (76)
T TIGR00412 2 KIQIYGTGCAN-CQMTEKNVKKAVEELGI-----DAEFEKV 36 (76)
T ss_pred EEEEECCCCcC-HHHHHHHHHHHHHHcCC-----CeEEEEe
Confidence 37899999998 99999999999998742 3565444
No 131
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.78 E-value=5.1e-05 Score=64.21 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=39.4
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.++.++|+||++||++ |....|.+.++.+.++.. .+++.+..|..+
T Consensus 363 ~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~--~~~i~~~~id~~ 408 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGH-CKNLAPIYEELAEKYKDA--ESDVVIAKMDAT 408 (462)
T ss_pred CCCeEEEEEECCCCHh-HHHHHHHHHHHHHHhhcC--CCcEEEEEEECC
Confidence 4789999999999998 999999999999998752 226888888876
No 132
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.75 E-value=9.8e-05 Score=48.92 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=37.9
Q ss_pred CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 79 EDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 79 ~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.++++.+.+..|++.||++ |+...+.+.++...+ +++.+..+..|
T Consensus 8 ~~l~~pv~i~~F~~~~C~~-C~~~~~~~~~l~~~~------~~i~~~~vd~~ 52 (89)
T cd03026 8 RRLNGPINFETYVSLSCHN-CPDVVQALNLMAVLN------PNIEHEMIDGA 52 (89)
T ss_pred HhcCCCEEEEEEECCCCCC-cHHHHHHHHHHHHHC------CCceEEEEEhH
Confidence 4677888899999999998 999999999988764 36888888877
No 133
>KOG0908|consensus
Probab=97.75 E-value=3.4e-05 Score=59.84 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=36.3
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
-+|.++|.|.|+||+| |....|.+.++..+|. +..|+=|.+|
T Consensus 20 g~k~v~Vdfta~wCGP-Ck~IaP~Fs~lankYp------~aVFlkVdVd 61 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGP-CKRIAPIFSDLANKYP------GAVFLKVDVD 61 (288)
T ss_pred CceEEEEEEEecccch-HHhhhhHHHHhhhhCc------ccEEEEEeHH
Confidence 4699999999999999 9999999999999985 4566666666
No 134
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.62 E-value=0.00023 Score=46.15 Aligned_cols=43 Identities=28% Similarity=0.504 Sum_probs=30.2
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+||+++|+|++.||++ |...-..+ .++.+.+.+ ++..+-|..+
T Consensus 16 ~~kpvlv~f~a~wC~~-C~~l~~~~~~~~~v~~~~~~-----~fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPP-CKKLEREVFSDPEVQEALNK-----NFVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHH-HHHHHHHTTTSHHHHHHHHH-----CSEEEEEETT
T ss_pred cCCCEEEEEECCCCHh-HHHHHHHHcCCHHHHHHHHC-----CEEEEEEEcC
Confidence 5899999999999998 99987666 333333332 4555555554
No 135
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.58 E-value=0.00025 Score=54.50 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=35.0
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK 141 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~ 141 (183)
+.+.++++.||++|||+ |+...+.++++..+. +++.+.-|..| +.++..++
T Consensus 131 ~~~pv~I~~F~a~~C~~-C~~~~~~l~~l~~~~------~~i~~~~vD~~---~~~~~~~~ 181 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPY-CPYAVLMAHKFALAN------DKILGEMIEAN---ENPDLAEK 181 (215)
T ss_pred cCCCcEEEEEECCCCCC-cHHHHHHHHHHHHhc------CceEEEEEeCC---CCHHHHHH
Confidence 34455677799999998 999888888877652 25777666655 34444443
No 136
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.47 E-value=0.00027 Score=41.75 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
|+.||.+||+. |....+.+.++ ... ..++.++.++.+.
T Consensus 1 l~~~~~~~c~~-c~~~~~~~~~~--~~~----~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPF-CQALRPVLAEL--ALL----NKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChh-HHhhhhHHHHH--Hhh----CCCcEEEEEEcCC
Confidence 57899999997 99999999998 222 2379999999884
No 137
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.45 E-value=0.0002 Score=55.14 Aligned_cols=46 Identities=22% Similarity=0.469 Sum_probs=41.9
Q ss_pred cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
+.++.+++-|++|+.+.|+. |....|.|+.+.+++ ++.++.||+|.
T Consensus 115 l~~la~~~gL~~F~~~~C~~-C~~~~pil~~~~~~y-------g~~v~~vs~DG 160 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPY-CQQQAPILQQFADKY-------GFSVIPVSLDG 160 (215)
T ss_pred HHHHhhCeEEEEEEcCCCch-hHHHHHHHHHHHHHh-------CCEEEEEecCC
Confidence 55677899999999999997 999999999999987 79999999994
No 138
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.30 E-value=0.00028 Score=55.35 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=41.9
Q ss_pred cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
++++.+++-|++|+.+.||. |....|.|+.+.+++ ++.++.||+|.
T Consensus 138 i~~la~~~GL~fFy~s~Cp~-C~~~aPil~~fa~~y-------g~~v~~VS~DG 183 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPI-DGQLAQVINDFRDTY-------GLSVIPVSVDG 183 (248)
T ss_pred HHHHHhcceEEEEECCCCch-hHHHHHHHHHHHHHh-------CCeEEEEecCC
Confidence 55667889999999999997 999999999999988 79999999995
No 139
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.0019 Score=49.32 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=78.1
Q ss_pred hcCCCcccCCCeEEEcCCCCeeecCcc-CCCE-EEEE-E-----EcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEE
Q psy17592 55 RNLGKVAIGGKFELVDCNNKPVKSEDF-LGKW-ALIY-F-----GFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIF 126 (183)
Q Consensus 55 ~~~~~~~~~p~f~l~d~~G~~v~l~~~-~gk~-vll~-f-----~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~ 126 (183)
..++-..+-.+..+...+|+ .+|.|| .||- .||| | |...||. |...+-++.-....+... +|.++.
T Consensus 44 R~LPw~~V~K~Y~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~g-CS~laD~~dGa~~HL~~~----dv~lv~ 117 (247)
T COG4312 44 RALPWGEVDKDYVFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPG-CSFLADHWDGAVAHLEHH----DVTLVA 117 (247)
T ss_pred HhCCcceecceeEeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCc-hhhHHhhhhhhhhhHhhc----CceEEE
Confidence 44544445567778888885 688886 7764 3443 3 4567997 999999997777766644 899999
Q ss_pred EEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCCC
Q psy17592 127 ISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPK 176 (183)
Q Consensus 127 Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~ 176 (183)
||-- ..+.+..|.+.+|-.|+.++..... +-+.|++.+.+...
T Consensus 118 VsRA----Pl~~l~~~k~rmGW~f~w~Ss~~s~---Fn~Df~vsf~~~q~ 160 (247)
T COG4312 118 VSRA----PLEELVAYKRRMGWQFPWVSSTDSD---FNRDFQVSFTEDQQ 160 (247)
T ss_pred EecC----cHHHHHHHHHhcCCcceeEeccCcc---cccccccccchhhc
Confidence 9965 5799999999999888777665443 56667666655443
No 140
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.29 E-value=6.7e-05 Score=53.23 Aligned_cols=57 Identities=23% Similarity=0.442 Sum_probs=40.5
Q ss_pred cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHH
Q psy17592 78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVK 144 (183)
Q Consensus 78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~ 144 (183)
++.+..+..++.|..+|||+ |..++|.|.++.+.. +++.+=.|..| ++++.+.+|+.
T Consensus 36 l~~~~~~~~ilvi~e~WCgD-~~~~vP~l~kiae~~------p~i~~~~i~rd---~~~el~~~~lt 92 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGD-CARNVPVLAKIAEAN------PNIEVRIILRD---ENKELMDQYLT 92 (129)
T ss_dssp HHT--S-EEEEEE--TT-HH-HHHHHHHHHHHHHH-------TTEEEEEE-HH---HHHHHTTTTTT
T ss_pred HHhcCCCcEEEEEECCCchh-HHHHHHHHHHHHHhC------CCCeEEEEEec---CChhHHHHHHh
Confidence 34456678899999999998 999999999999974 26777777777 67788888877
No 141
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.27 E-value=0.0011 Score=41.21 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
+..|+++|||+ |+...+.|.+. ++.+..++++ +.++..+++.+.++
T Consensus 2 i~lf~~~~C~~-C~~~~~~l~~~-----------~i~~~~vdi~---~~~~~~~~~~~~~~ 47 (74)
T TIGR02196 2 VKVYTTPWCPP-CKKAKEYLTSK-----------GIAFEEIDVE---KDSAAREEVLKVLG 47 (74)
T ss_pred EEEEcCCCChh-HHHHHHHHHHC-----------CCeEEEEecc---CCHHHHHHHHHHhC
Confidence 45689999998 99987776541 5777788777 34555666777766
No 142
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.23 E-value=0.00073 Score=51.96 Aligned_cols=43 Identities=9% Similarity=0.197 Sum_probs=32.6
Q ss_pred cCCCEEEEEEEc---CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 81 FLGKWALIYFGF---THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 81 ~~gk~vll~f~~---t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+++...++.|.+ +||++ |+...|.+.++.+++. ++++..+.+|
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~-C~~~~p~l~~la~~~~------~~~i~~v~vd 62 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQY-CKETEQLLEELSEVSP------KLKLEIYDFD 62 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCc-hHHHHHHHHHHHhhCC------CceEEEEecC
Confidence 455555666767 99998 9999999999988863 4566666666
No 143
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.23 E-value=0.00041 Score=54.76 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=42.3
Q ss_pred cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592 78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE 132 (183)
Q Consensus 78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~ 132 (183)
+.++.+++-|++|+.+.||. |....|.|+.+.+++ ++.++.||+|..
T Consensus 145 i~~la~~~gL~fFy~~~C~~-C~~~apil~~fa~~y-------gi~v~~VS~DG~ 191 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPI-SQKMAPVIQAFAKEY-------GISVIPISVDGT 191 (256)
T ss_pred HHHHHhceeEEEEECCCCch-hHHHHHHHHHHHHHh-------CCeEEEEecCCC
Confidence 55667889999999999997 999999999999988 799999999953
No 144
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.18 E-value=0.001 Score=41.99 Aligned_cols=32 Identities=13% Similarity=0.458 Sum_probs=24.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+.-||++|||+ |+...+.|.++ ++.+-.|++|
T Consensus 2 v~ly~~~~C~~-C~~~~~~L~~~-----------~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGY-CAQLMRTLDKL-----------GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChh-HHHHHHHHHHc-----------CCceEEEeCc
Confidence 56799999998 99988877654 3455567776
No 145
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0066 Score=43.75 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=71.5
Q ss_pred cCCCeEEEcC------CC-CeeecCcc-CCCEEEEE-EEcCCCCCCcHH-HHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 62 IGGKFELVDC------NN-KPVKSEDF-LGKWALIY-FGFTHCPDICPD-ELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 62 ~~p~f~l~d~------~G-~~v~l~~~-~gk~vll~-f~~t~C~~~C~~-~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
..|..++... +| ..++..++ +||.|+|+ .-+.--|+ |.. .+|...+++++++.++ -=+|+.||++
T Consensus 8 klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPT-CS~~hlPgY~~~~d~f~~kG---VD~I~cVSVN- 82 (165)
T COG0678 8 KLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPT-CSSSHLPGYLELADEFKAKG---VDEIYCVSVN- 82 (165)
T ss_pred cCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCC-cccccCccHHHHHHHHHHcC---CceEEEEEeC-
Confidence 3465555443 33 24555554 88766555 44556665 877 6899999999998763 3356777877
Q ss_pred CCCcHHHHHHHHHHhCC--CeEEecCCHHHHHHHHhhcCeeEeeCCC
Q psy17592 132 ERDTPELVGKYVKEFSP--KFIGLTGTVEQVAAACKAYRVYFSAGPK 176 (183)
Q Consensus 132 ~~d~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~gv~~~~~~~ 176 (183)
++-.+.+|.+..+. +..++.+...+ +.+.+|.-..+++.
T Consensus 83 ---D~FVm~AWak~~g~~~~I~fi~Dg~ge---FTk~~Gm~~d~~~~ 123 (165)
T COG0678 83 ---DAFVMNAWAKSQGGEGNIKFIPDGNGE---FTKAMGMLVDKSDL 123 (165)
T ss_pred ---cHHHHHHHHHhcCCCccEEEecCCCch---hhhhcCceeecccC
Confidence 67899999999984 46777665544 88888887766553
No 146
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.89 E-value=0.0025 Score=45.19 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.2
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHH
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKM 106 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l 106 (183)
+||+++|+|++.||++ |+..-...
T Consensus 22 ~~Kpvmv~f~sdwC~~-Ck~l~k~~ 45 (130)
T cd02960 22 SNKPLMVIHHLEDCPH-SQALKKAF 45 (130)
T ss_pred CCCeEEEEEeCCcCHh-HHHHHHHh
Confidence 6899999999999998 99976654
No 147
>KOG1731|consensus
Probab=96.68 E-value=0.0007 Score=58.27 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=35.9
Q ss_pred CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+.-+|.|+++||+. |+...|..+++.+.+.+= .+-|.+-.|..-
T Consensus 58 ~~~lVEFy~swCGh-Cr~FAPtfk~~A~dl~~W--~~vv~vaaVdCA 101 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGH-CRAFAPTFKKFAKDLEKW--RPVVRVAAVDCA 101 (606)
T ss_pred hhHHHHHHHhhhhh-hhhcchHHHHHHHHHhcc--cceeEEEEeecc
Confidence 46789999999997 999999999999988754 455666666554
No 148
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.63 E-value=0.016 Score=39.72 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.9
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHH
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELE 104 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~ 104 (183)
-++|+++|+|.+.||++ |.....
T Consensus 15 ~~~K~llv~~~~~~c~~-c~~~~~ 37 (114)
T cd02958 15 SEKKWLLVYLQSEDEFD-SQVLNR 37 (114)
T ss_pred hhCceEEEEEecCCcch-HHHHHH
Confidence 36899999999999998 988654
No 149
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.62 E-value=0.0057 Score=39.22 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
++.|+.+|||+ |....+.|.++. +. ..+.++-|+.+ +..+.+++++.+.
T Consensus 1 V~~f~~~~Cp~-C~~~~~~L~~~~--i~-----~~~~~~~v~~~---~~~~~~~~~l~~~ 49 (84)
T TIGR02180 1 VVVFSKSYCPY-CKKAKEILAKLN--VK-----PAYEVVELDQL---SNGSEIQDYLEEI 49 (84)
T ss_pred CEEEECCCChh-HHHHHHHHHHcC--CC-----CCCEEEEeeCC---CChHHHHHHHHHH
Confidence 46788999998 999999998875 11 13667777665 2345555555543
No 150
>KOG0190|consensus
Probab=96.51 E-value=0.0032 Score=53.88 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~ 116 (183)
.+|=|||.|+|+||++ |....|.+++|.+.+++.
T Consensus 383 e~KdVLvEfyAPWCgH-Ck~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGH-CKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEcCcccch-hhhhhhHHHHHHHHhcCC
Confidence 5789999999999998 999999999999999864
No 151
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.37 E-value=0.02 Score=39.76 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=37.4
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK 149 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~ 149 (183)
+.+.+||.|.++| |. |.. +|+..+|..++... .+.+.+--|..|...++ .-++.+++++++
T Consensus 17 ~~~~vlV~F~A~~-Pw-c~k-~~~~~~LA~e~~~a--a~~v~lakVd~~d~~~~--~~~~L~~~y~I~ 77 (116)
T cd03007 17 KFKYSLVKFDTAY-PY-GEK-HEAFTRLAESSASA--TDDLLVAEVGIKDYGEK--LNMELGERYKLD 77 (116)
T ss_pred cCCcEEEEEeCCC-CC-CCC-hHHHHHHHHHHHhh--cCceEEEEEecccccch--hhHHHHHHhCCC
Confidence 4578999999966 43 554 58888888887653 23455555555421112 225667777653
No 152
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.27 E-value=0.012 Score=38.20 Aligned_cols=38 Identities=18% Similarity=0.463 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
+.-|..+|||. |......|+++..+++ ++.+..|+++.
T Consensus 3 v~iy~~~~C~~-C~~a~~~L~~l~~~~~------~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFGRPGCPY-CVRAKELAEKLSEERD------DFDYRYVDIHA 40 (85)
T ss_pred EEEEeCCCChh-HHHHHHHHHhhccccc------CCcEEEEECCC
Confidence 56788999998 9999999999886532 67777777773
No 153
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.18 E-value=0.014 Score=45.11 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=57.8
Q ss_pred CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592 64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV 143 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~ 143 (183)
|.+++-+. ....+.+|+++||-+.-.+|.. |...+..|..|..++..++ ..+|.++.|+-. ......+...+
T Consensus 11 p~W~i~~~----~pm~~~~G~VtvVALL~asc~~-c~~qa~~le~Lr~kL~~~g-~~~I~f~vVN~~--~~~s~~~~~~l 82 (238)
T PF04592_consen 11 PPWKIGGQ----DPMLNSLGHVTVVALLQASCYF-CLLQASRLEDLREKLENEG-LSNISFMVVNHQ--GEHSRLKYWEL 82 (238)
T ss_pred CCceECCc----hHhhhcCCcEEeeeehhhhhHH-HHHHHHHHHHHHHHHHHCC-CCceEEEEEcCC--CcchhHHHHHH
Confidence 66666432 3456678999999999999996 9999999999999999875 457888888744 23333333344
Q ss_pred HHhC-CCeEEe
Q psy17592 144 KEFS-PKFIGL 153 (183)
Q Consensus 144 ~~~~-~~~~~l 153 (183)
++.- .+++.+
T Consensus 83 ~~r~~~~ipVy 93 (238)
T PF04592_consen 83 KRRVSEHIPVY 93 (238)
T ss_pred HHhCCCCCcee
Confidence 4443 345544
No 154
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.11 E-value=0.014 Score=40.72 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=31.7
Q ss_pred CCCEEEEEEEc-------CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGF-------THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~-------t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.|++++|.|.+ +|||+ |....|.+++......+ +..+|.+.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPD-C~~aep~v~~~f~~~~~-----~~~lv~v~VG 67 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPD-CVAAEPVVEKAFKKAPE-----NARLVYVEVG 67 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHH-HHHHHHHHHHHHHH-ST-----TEEEEEEE--
T ss_pred CCCeEEEEEEccCCCCCCcccHH-HHHHHHHHHHHHHhCCC-----CceEEEEEcC
Confidence 56777777765 49998 99999999999887432 6788888775
No 155
>KOG0190|consensus
Probab=96.10 E-value=0.0086 Score=51.31 Aligned_cols=55 Identities=15% Similarity=0.295 Sum_probs=40.7
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
...+||.|+|.||.. |....|...+..+.+++. +..+.+. -+| .+.+ .+.+.+++
T Consensus 42 ~~~vlVeFYAPWCgh-ck~LaPey~kAA~~Lke~--~s~i~La--kVD---at~~--~~~~~~y~ 96 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGH-CKALAPEYEKAATELKEE--GSPVKLA--KVD---ATEE--SDLASKYE 96 (493)
T ss_pred CceEEEEEEchhhhh-hhhhCcHHHHHHHHhhcc--CCCceeE--Eee---cchh--hhhHhhhc
Confidence 467899999999998 999999999999999876 2334333 444 2223 66777775
No 156
>KOG0541|consensus
Probab=96.09 E-value=0.026 Score=40.94 Aligned_cols=91 Identities=11% Similarity=0.169 Sum_probs=61.6
Q ss_pred eeecCcc-CCCEEEEE-EEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC--Ce
Q psy17592 75 PVKSEDF-LGKWALIY-FGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP--KF 150 (183)
Q Consensus 75 ~v~l~~~-~gk~vll~-f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~--~~ 150 (183)
+++++++ +||-++|+ .-+..-|.-|....|-..+-.++++.++ -=+++.||+| ++-.++.|.+.++. ..
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKG---Vd~iicvSVn----DpFv~~aW~k~~g~~~~V 106 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKG---VDEIICVSVN----DPFVMKAWAKSLGANDHV 106 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcC---CcEEEEEecC----cHHHHHHHHhhcCccceE
Confidence 7788886 89776665 4444455424455688888888888762 2357777887 78999999999975 45
Q ss_pred EEecCCHHHHHHHHhhcCeeEeeCC
Q psy17592 151 IGLTGTVEQVAAACKAYRVYFSAGP 175 (183)
Q Consensus 151 ~~l~~~~~~~~~~~~~~gv~~~~~~ 175 (183)
.++.+...+ +.+.+|+-.+-.+
T Consensus 107 ~f~aD~~g~---ftk~lgleld~~d 128 (171)
T KOG0541|consen 107 KFVADPAGE---FTKSLGLELDLSD 128 (171)
T ss_pred EEEecCCCc---eeeeccceeeecc
Confidence 556554443 6777776665443
No 157
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.94 E-value=0.02 Score=40.73 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=27.5
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHh
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKI 113 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~ 113 (183)
.++++|+.|+..+||. |....+.+.++..++
T Consensus 4 ~a~~~i~~f~D~~Cp~-C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGY-CKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChh-HHHhhHHHHHHHHHC
Confidence 4688999999999998 999999999987764
No 158
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.88 E-value=0.044 Score=42.71 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=48.2
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC---CCCcH-------------HHHHHHHHHh
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP---ERDTP-------------ELVGKYVKEF 146 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp---~~d~~-------------~~~~~~~~~~ 146 (183)
||.+|+.|....||+ |+...+.|.++.+ . ++++..+.+.- +.+.. ..+.++....
T Consensus 107 ~k~~I~vFtDp~Cpy-Ckkl~~~l~~~~~----~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~ 177 (232)
T PRK10877 107 EKHVITVFTDITCGY-CHKLHEQMKDYNA----L----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGK 177 (232)
T ss_pred CCEEEEEEECCCChH-HHHHHHHHHHHhc----C----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 688899999999998 9999988887643 1 46665553321 11111 1222222211
Q ss_pred CCCeEEecCCHHHHHHHHhhcCeeEeeC
Q psy17592 147 SPKFIGLTGTVEQVAAACKAYRVYFSAG 174 (183)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~~~gv~~~~~ 174 (183)
..+-.....+-+...++++++|+.-++.
T Consensus 178 ~~~~~~c~~~v~~~~~la~~lgi~gTPt 205 (232)
T PRK10877 178 DVSPASCDVDIADHYALGVQFGVQGTPA 205 (232)
T ss_pred CCCcccccchHHHhHHHHHHcCCccccE
Confidence 1211111234556677899999876654
No 159
>KOG0912|consensus
Probab=95.88 E-value=0.013 Score=47.04 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=39.2
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
...|+|+|.|.||+- .+..+|.+.+..+.++++ .++-++|+-.+|-
T Consensus 13 ~elvfv~FyAdWCrF-Sq~L~piF~EAa~~~~~e--~P~~kvvwg~VDc 58 (375)
T KOG0912|consen 13 NELVFVNFYADWCRF-SQMLKPIFEEAAAKFKQE--FPEGKVVWGKVDC 58 (375)
T ss_pred ceEEeeeeehhhchH-HHHHhHHHHHHHHHHHHh--CCCcceEEEEccc
Confidence 578999999999998 999999999999998877 4556777777774
No 160
>KOG0191|consensus
Probab=95.72 E-value=0.02 Score=47.85 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=29.6
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~ 115 (183)
.++..+|.|+++||++ |....|...++...++.
T Consensus 46 ~~~~~~v~fyapwc~~-c~~l~~~~~~~~~~l~~ 78 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGH-CKKLAPTYKKLAKALKG 78 (383)
T ss_pred cCCceEEEEECCCCcc-hhhhchHHHHHHHHhcC
Confidence 4678999999999998 99999999999988863
No 161
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.69 E-value=0.023 Score=34.91 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
++.|..+|||+ |......|.+. ++.+..+.+|.
T Consensus 2 v~l~~~~~c~~-c~~~~~~l~~~-----------~i~~~~~~i~~ 34 (73)
T cd02976 2 VTVYTKPDCPY-CKATKRFLDER-----------GIPFEEVDVDE 34 (73)
T ss_pred EEEEeCCCChh-HHHHHHHHHHC-----------CCCeEEEeCCC
Confidence 46688999998 99866655542 56666777773
No 162
>KOG3425|consensus
Probab=95.67 E-value=0.04 Score=38.24 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=32.9
Q ss_pred CCCEEEEEEEc--------CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGF--------THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~--------t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+|+-+.+.|.+ +|||+ |....|.+.+..+... +++.||.+-+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPd-CV~AEPvi~~alk~ap-----~~~~~v~v~VG 74 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPD-CVAAEPVINEALKHAP-----EDVHFVHVYVG 74 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCch-HHHhhHHHHHHHHhCC-----CceEEEEEEec
Confidence 56667677754 69998 9999999999888443 36888888765
No 163
>smart00594 UAS UAS domain.
Probab=95.41 E-value=0.034 Score=38.77 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=20.5
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHHH
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELEK 105 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~~ 105 (183)
-.+|.++|+|++.||++ |......
T Consensus 25 ~~~K~~lv~~~~~~c~~-c~~~~r~ 48 (122)
T smart00594 25 RQRRLLWLYLHSQDSPD-SQVFNRD 48 (122)
T ss_pred hhcCCEEEEEeCCCCch-HHHHHHH
Confidence 36899999999999998 9987654
No 164
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.38 E-value=0.059 Score=38.80 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=39.5
Q ss_pred eecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592 76 VKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV 129 (183)
Q Consensus 76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~ 129 (183)
+.+.+-.++++|+.|....||. |....+.+.++.+++-+. +.+.++...+
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~-C~~~~~~~~~~~~~~i~~---~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPH-CAKFHEELEKLLKKYIDP---GKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTTT---TTEEEEEEES
T ss_pred CeecCCCCCeEEEEEECCCCHh-HHHHHHHHhhhhhhccCC---CceEEEEEEc
Confidence 4455556799999999999998 999999999999998433 2788888876
No 165
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.30 E-value=0.021 Score=34.36 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++.|+.++||. |......|.+. ++.+-.+.++
T Consensus 1 V~vy~~~~C~~-C~~~~~~L~~~-----------~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPY-CKKAKEFLDEK-----------GIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHH-HHHHHHHHHHT-----------TBEEEEEEGG
T ss_pred cEEEEcCCCcC-HHHHHHHHHHc-----------CCeeeEcccc
Confidence 46788999998 99977777443 6788888887
No 166
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.17 E-value=0.024 Score=49.30 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=37.8
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHH-HHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMA-AVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~-~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
++|+|+|+|.|.||-. |+..-+..- +.+...+- .++..+=..+- +++ .+.++.++++|
T Consensus 473 ~~~pVmlDfyAdWCvt-CK~~e~~tfsd~~v~~~~----~~~vlLqaDvT--~~~-p~~~~lLk~~~ 531 (569)
T COG4232 473 KAKPVMLDFYADWCVT-CKENEKYTFSDPQVQQAL----QDVVLLQADVT--AND-PAITALLKRLG 531 (569)
T ss_pred CCCcEEEeeehhHHHH-hHhhhhhccCcHHHHHhc----CCeEEEEeeec--CCC-HHHHHHHHHcC
Confidence 4569999999999997 998876655 33333332 25555544443 233 45667778876
No 167
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.05 E-value=0.062 Score=32.71 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++-|..+|||. |+.....|.+. ++.+..++++
T Consensus 2 v~ly~~~~Cp~-C~~~~~~L~~~-----------~i~~~~~di~ 33 (72)
T cd02066 2 VVVFSKSTCPY-CKRAKRLLESL-----------GIEFEEIDIL 33 (72)
T ss_pred EEEEECCCCHH-HHHHHHHHHHc-----------CCcEEEEECC
Confidence 45677999998 99987777765 4566666666
No 168
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.94 E-value=0.19 Score=37.85 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.5
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHH
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAA 108 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~ 108 (183)
.++.+++.|....||. |+...+.|.+
T Consensus 76 ~~~~~i~~f~D~~Cp~-C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPY-CRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCcc-HHHHHHHHhh
Confidence 4789999999999998 9999998877
No 169
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.85 E-value=0.13 Score=32.62 Aligned_cols=47 Identities=13% Similarity=0.321 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
++.|...|||. |...-..|.++.. .++++-|..+ +..+.+++++++.
T Consensus 2 v~~y~~~~Cp~-C~~~~~~l~~~~~---------~~~~~~v~~~---~~~~~~~~~~~~~ 48 (82)
T cd03419 2 VVVFSKSYCPY-CKRAKSLLKELGV---------KPAVVELDQH---EDGSEIQDYLQEL 48 (82)
T ss_pred EEEEEcCCCHH-HHHHHHHHHHcCC---------CcEEEEEeCC---CChHHHHHHHHHH
Confidence 46677999998 9997777777522 3555555555 2334555555443
No 170
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.82 E-value=0.16 Score=37.12 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=29.2
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhh
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKID 114 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~ 114 (183)
.++++|+.|+...||. |....+.+.++.+++.
T Consensus 14 ~~~~~i~~f~D~~Cp~-C~~~~~~~~~~~~~~~ 45 (178)
T cd03019 14 SGKPEVIEFFSYGCPH-CYNFEPILEAWVKKLP 45 (178)
T ss_pred CCCcEEEEEECCCCcc-hhhhhHHHHHHHHhCC
Confidence 5789999999999997 9999999999998874
No 171
>PHA03050 glutaredoxin; Provisional
Probab=94.80 E-value=0.18 Score=34.53 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=16.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHH
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAV 109 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l 109 (183)
++-|..+|||+ |......|.+.
T Consensus 15 V~vys~~~CPy-C~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPF-CRNALDILNKF 36 (108)
T ss_pred EEEEECCCChH-HHHHHHHHHHc
Confidence 45677999998 99877666655
No 172
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.70 E-value=0.13 Score=32.14 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
+.-|..++||. |......|++. ++.+-.+.++ ++++..+++.+..+
T Consensus 2 i~ly~~~~Cp~-C~~ak~~L~~~-----------~i~~~~i~i~---~~~~~~~~~~~~~~ 47 (75)
T cd03418 2 VEIYTKPNCPY-CVRAKALLDKK-----------GVDYEEIDVD---GDPALREEMINRSG 47 (75)
T ss_pred EEEEeCCCChH-HHHHHHHHHHC-----------CCcEEEEECC---CCHHHHHHHHHHhC
Confidence 45678999998 99977776652 5666677776 23555555555544
No 173
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.45 E-value=0.11 Score=32.53 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=22.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+-|..++||. |......|.+. ++.+..+.++
T Consensus 4 ~ly~~~~C~~-C~ka~~~L~~~-----------gi~~~~~di~ 34 (73)
T cd03027 4 TIYSRLGCED-CTAVRLFLREK-----------GLPYVEINID 34 (73)
T ss_pred EEEecCCChh-HHHHHHHHHHC-----------CCceEEEECC
Confidence 3466799998 99977777753 5667777776
No 174
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.41 E-value=0.11 Score=32.86 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
.-|+.+|||. |......|++. ++.+-.+.++ .+++..+++.+..|
T Consensus 2 ~ly~~~~Cp~-C~~a~~~L~~~-----------~i~~~~~di~---~~~~~~~~~~~~~g 46 (79)
T TIGR02181 2 TIYTKPYCPY-CTRAKALLSSK-----------GVTFTEIRVD---GDPALRDEMMQRSG 46 (79)
T ss_pred EEEecCCChh-HHHHHHHHHHc-----------CCCcEEEEec---CCHHHHHHHHHHhC
Confidence 4578999998 99977777653 4555566666 34455555555443
No 175
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.25 E-value=0.25 Score=32.15 Aligned_cols=37 Identities=16% Similarity=0.394 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++-|..+|||. |......|.++..+. .++.+..+.++
T Consensus 2 V~vys~~~Cp~-C~~ak~~L~~~~~~~------~~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPY-CVRAKQLAEKLAIER------ADFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCcc-HHHHHHHHHHhCccc------CCCcEEEEECC
Confidence 46678999998 999888887765332 24566666665
No 176
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=94.01 E-value=0.11 Score=35.74 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=36.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592 88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF 150 (183)
Q Consensus 88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~ 150 (183)
..|+.++|+. |+.....|.+. ++.+-.+.+.....+.+.++++++..+.++
T Consensus 3 ~iY~~~~C~~-c~ka~~~L~~~-----------gi~~~~idi~~~~~~~~el~~~~~~~~~~~ 53 (115)
T cd03032 3 KLYTSPSCSS-CRKAKQWLEEH-----------QIPFEERNLFKQPLTKEELKEILSLTENGV 53 (115)
T ss_pred EEEeCCCCHH-HHHHHHHHHHC-----------CCceEEEecCCCcchHHHHHHHHHHhcCCH
Confidence 3567899998 99977777663 456666666544468899999999885443
No 177
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=93.89 E-value=0.3 Score=38.45 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=28.3
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhh
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKID 114 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~ 114 (183)
.||+.+++..+-|||. |..+.-.|--...++.
T Consensus 57 ~Gk~~v~~igw~gCP~-~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPY-CAAESWALYIALSRFG 88 (249)
T ss_pred CCeeEEEEEecccCcc-chhhHHHHHHHHHhcC
Confidence 5899999999999997 9999988888877764
No 178
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=93.61 E-value=0.12 Score=36.69 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF 150 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~ 150 (183)
+.-|..++|+. |+.....|.+- ++.+-.+.+.....+.+.+.++++..+..+
T Consensus 2 i~iY~~~~C~~-C~ka~~~L~~~-----------gi~~~~idi~~~~~~~~eL~~~l~~~~~g~ 53 (131)
T PRK01655 2 VTLFTSPSCTS-CRKAKAWLEEH-----------DIPFTERNIFSSPLTIDEIKQILRMTEDGT 53 (131)
T ss_pred EEEEeCCCChH-HHHHHHHHHHc-----------CCCcEEeeccCChhhHHHHHHHHHHhcCCH
Confidence 34567999998 99977666553 455556665544467899999999885443
No 179
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=93.57 E-value=0.2 Score=33.85 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=35.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC
Q psy17592 88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP 148 (183)
Q Consensus 88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~ 148 (183)
.-|..++|+. |+.....|++. ++.+-.|.+.....+.+.++++....+.
T Consensus 2 ~iY~~~~C~~-c~ka~~~L~~~-----------~i~~~~idi~~~~~~~~~l~~~~~~~~~ 50 (105)
T cd02977 2 TIYGNPNCST-SRKALAWLEEH-----------GIEYEFIDYLKEPPTKEELKELLAKLGL 50 (105)
T ss_pred EEEECCCCHH-HHHHHHHHHHc-----------CCCcEEEeeccCCCCHHHHHHHHHhcCC
Confidence 4577899998 99987766663 4555555554444688899999888763
No 180
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=93.52 E-value=0.1 Score=35.84 Aligned_cols=49 Identities=12% Similarity=0.318 Sum_probs=35.5
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592 89 YFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK 149 (183)
Q Consensus 89 ~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~ 149 (183)
-|..++||. |+.....|.+- ++.+-.+.+.....+.+.++++++..+.+
T Consensus 3 iY~~~~C~~-c~ka~~~L~~~-----------~i~~~~idi~~~~~~~~el~~~~~~~~~~ 51 (111)
T cd03036 3 FYEYPKCST-CRKAKKWLDEH-----------GVDYTAIDIVEEPPSKEELKKWLEKSGLP 51 (111)
T ss_pred EEECCCCHH-HHHHHHHHHHc-----------CCceEEecccCCcccHHHHHHHHHHcCCC
Confidence 467899998 99987777663 45566666554446788999998887643
No 181
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.41 E-value=0.36 Score=32.37 Aligned_cols=33 Identities=15% Similarity=0.375 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
++-|..+|||. |...-..|.+. ++.+-.+.+|.
T Consensus 10 Vvvysk~~Cp~-C~~ak~~L~~~-----------~i~~~~vdid~ 42 (99)
T TIGR02189 10 VVIFSRSSCCM-CHVVKRLLLTL-----------GVNPAVHEIDK 42 (99)
T ss_pred EEEEECCCCHH-HHHHHHHHHHc-----------CCCCEEEEcCC
Confidence 34566899998 99866655543 35455666663
No 182
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=93.25 E-value=0.24 Score=33.64 Aligned_cols=48 Identities=8% Similarity=0.239 Sum_probs=34.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
..|+.++|+. |+.....|.+- ++.+-.+.+..+.-+.+.+++++++.|
T Consensus 2 ~iy~~~~C~~-crka~~~L~~~-----------~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 2 TLYGIKNCDT-VKKARKWLEAR-----------GVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred EEEeCCCCHH-HHHHHHHHHHc-----------CCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 4578999997 99977776653 344444444433468899999999877
No 183
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=93.17 E-value=0.26 Score=33.71 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592 106 MAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 106 l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~ 171 (183)
|.+.+.++++. ++.+|.|+.. +++.+++|.+..+.+++.+.++... +-+++|...
T Consensus 2 L~~~~~~l~~~----gv~lv~I~~g----~~~~~~~f~~~~~~p~~ly~D~~~~---lY~~lg~~~ 56 (115)
T PF13911_consen 2 LSRRKPELEAA----GVKLVVIGCG----SPEGIEKFCELTGFPFPLYVDPERK---LYKALGLKR 56 (115)
T ss_pred hhHhHHHHHHc----CCeEEEEEcC----CHHHHHHHHhccCCCCcEEEeCcHH---HHHHhCCcc
Confidence 34455555544 8999999976 6666999999988999977776544 777777664
No 184
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.15 E-value=0.2 Score=35.56 Aligned_cols=51 Identities=8% Similarity=0.123 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK 149 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~ 149 (183)
+..|..++|+. |+.....|.+- ++.+-.+.+....-+.+.++++++..+.+
T Consensus 2 i~iY~~~~C~~-crkA~~~L~~~-----------gi~~~~~di~~~~~s~~el~~~l~~~~~g 52 (131)
T PRK12559 2 VVLYTTASCAS-CRKAKAWLEEN-----------QIDYTEKNIVSNSMTVDELKSILRLTEEG 52 (131)
T ss_pred EEEEeCCCChH-HHHHHHHHHHc-----------CCCeEEEEeeCCcCCHHHHHHHHHHcCCC
Confidence 34677999998 99977666553 45555555544346899999999985533
No 185
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.12 E-value=0.27 Score=32.84 Aligned_cols=49 Identities=14% Similarity=0.296 Sum_probs=29.5
Q ss_pred CCCEEEEEEEc----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 82 LGKWALIYFGF----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 82 ~gk~vll~f~~----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
..+.|+|+-.. +|||. |...-..|.+. ++.+..+.++ +++ .+++.+.+.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~-C~~ak~lL~~~-----------~i~~~~~di~---~~~-~~~~~l~~~ 62 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGF-SARAVQILKAC-----------GVPFAYVNVL---EDP-EIRQGIKEY 62 (97)
T ss_pred ccCCEEEEEccCCCCCCCch-HHHHHHHHHHc-----------CCCEEEEECC---CCH-HHHHHHHHH
Confidence 44566666543 79998 99876666554 4566666665 233 344445443
No 186
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=92.74 E-value=0.28 Score=36.15 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=30.6
Q ss_pred eecCccCCCEEEEEEEcCCCCCCcHHHHH------HHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHH
Q psy17592 76 VKSEDFLGKWALIYFGFTHCPDICPDELE------KMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYV 143 (183)
Q Consensus 76 v~l~~~~gk~vll~f~~t~C~~~C~~~~~------~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~ 143 (183)
+..+.-.+|+++|.+.++||.. |..... .+.++.++ .||.|-+|. |....+....
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~w-ChvM~~esf~d~eVa~~lN~----------~FI~VkvDr--ee~Pdid~~y 90 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHW-CHVMERESFSDPEVAEYLNR----------NFIPVKVDR--EERPDIDKIY 90 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HH-HHHHHHHTTT-HHHHHHHHH----------H-EEEEEET--TT-HHHHHHH
T ss_pred HHHHHhcCCcEEEEEEecCCcc-hhhhcccCcCCHHHHHHHhC----------CEEEEEecc--ccCccHHHHH
Confidence 3333346899999999999997 997543 33343332 578888884 4444444443
No 187
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.44 E-value=0.33 Score=31.85 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=28.5
Q ss_pred CCCEEEEEEEc----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 82 LGKWALIYFGF----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 82 ~gk~vll~f~~----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
++++|+|+--. +|||. |......|.+. ++.+-.+.++. + ..+++.+.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~-C~~ak~~L~~~-----------~i~y~~idv~~---~-~~~~~~l~~~ 58 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGF-SRKVVQILNQL-----------GVDFGTFDILE---D-EEVRQGLKEY 58 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcH-HHHHHHHHHHc-----------CCCeEEEEcCC---C-HHHHHHHHHH
Confidence 45666665432 69998 99866666554 45556666652 2 3344454444
No 188
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=92.26 E-value=0.3 Score=33.71 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=36.7
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592 89 YFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF 150 (183)
Q Consensus 89 ~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~ 150 (183)
-|+.++||. |+.....|.+- ++.+..+.+.....+.+.+.++++..|..+
T Consensus 3 iY~~~~C~~-c~ka~~~L~~~-----------~i~~~~idi~~~~~~~~el~~l~~~~~~~~ 52 (117)
T TIGR01617 3 VYGSPNCTT-CKKARRWLEAN-----------GIEYQFIDIGEDGPTREELLDILSLLEDGI 52 (117)
T ss_pred EEeCCCCHH-HHHHHHHHHHc-----------CCceEEEecCCChhhHHHHHHHHHHcCCCH
Confidence 467899998 99988777762 566666666544467888999999887433
No 189
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.95 Score=29.06 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=32.1
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
+..|.-++||. |...-..|.+. ++.+.-|.++. +..+..+++++..
T Consensus 3 v~iyt~~~CPy-C~~ak~~L~~~-----------g~~~~~i~~~~--~~~~~~~~~~~~~ 48 (80)
T COG0695 3 VTIYTKPGCPY-CKRAKRLLDRK-----------GVDYEEIDVDD--DEPEEAREMVKRG 48 (80)
T ss_pred EEEEECCCCch-HHHHHHHHHHc-----------CCCcEEEEecC--CcHHHHHHHHHHh
Confidence 45566788998 99977776632 67777777763 3446777777777
No 190
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.73 E-value=0.53 Score=29.30 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=23.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.-|..++||. |......|.+. ++.+-.+.++
T Consensus 2 ~ly~~~~Cp~-C~~ak~~L~~~-----------~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQ-CKMTKKALEEH-----------GIAFEEINID 32 (72)
T ss_pred EEEeCCCCHH-HHHHHHHHHHC-----------CCceEEEECC
Confidence 4577899998 99988777642 5667677776
No 191
>PRK10638 glutaredoxin 3; Provisional
Probab=91.45 E-value=0.46 Score=30.47 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=28.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
+.-|..+|||. |......|.+. ++.+..+.+|. ..+...++.+..+
T Consensus 4 v~ly~~~~Cp~-C~~a~~~L~~~-----------gi~y~~~dv~~---~~~~~~~l~~~~g 49 (83)
T PRK10638 4 VEIYTKATCPF-CHRAKALLNSK-----------GVSFQEIPIDG---DAAKREEMIKRSG 49 (83)
T ss_pred EEEEECCCChh-HHHHHHHHHHc-----------CCCcEEEECCC---CHHHHHHHHHHhC
Confidence 34566899998 99977766653 46666677763 3333444554444
No 192
>PRK10329 glutaredoxin-like protein; Provisional
Probab=91.36 E-value=0.84 Score=29.37 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+.-|..+|||. |......|.+. ++.+-.|.+|
T Consensus 3 v~lYt~~~Cp~-C~~ak~~L~~~-----------gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQ-CHATKRAMESR-----------GFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHh-HHHHHHHHHHC-----------CCceEEEECC
Confidence 45677899998 99977766431 6788788877
No 193
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=91.23 E-value=0.52 Score=35.91 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=26.5
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHH---HHHHHHhhC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKM---AAVVNKIDG 115 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l---~~l~~~~~~ 115 (183)
.|++.|+.|....||. |....+.+ ..+.+.+.+
T Consensus 36 ~~~~~VvEffdy~Cph-C~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 36 AGEPQVLEFFSFYCPH-CYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCeEEEEeCCCCcc-HHHhcccccchHHHHHhCCC
Confidence 4688899999999997 99988765 677777643
No 194
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=91.11 E-value=0.56 Score=36.98 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=24.3
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHH
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVN 111 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~ 111 (183)
+|.+|+.|.-..||. |+.....+.++.+
T Consensus 117 ak~~I~vFtDp~Cpy-C~kl~~~l~~~~~ 144 (251)
T PRK11657 117 APRIVYVFADPNCPY-CKQFWQQARPWVD 144 (251)
T ss_pred CCeEEEEEECCCChh-HHHHHHHHHHHhh
Confidence 577899999999998 9999999887755
No 195
>KOG0911|consensus
Probab=90.96 E-value=0.23 Score=38.23 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=43.2
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeE
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFI 151 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~ 151 (183)
+++.++++||+.||.+ |......+..+.+.. + +++++.+..| ..++-...+.-+-.+-+.
T Consensus 16 ~~~~~~~~f~a~wa~~-~~q~~~v~~~~~~~~--~----~~~~~k~~a~---~~~eis~~~~v~~vp~~~ 75 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVV-QKQMDQVFDHLAEYF--K----NAQFLKLEAE---EFPEISNLIAVEAVPYFV 75 (227)
T ss_pred ccchhhhhhhhhhhhh-hhhHHHHHHHHHHhh--h----hheeeeehhh---hhhHHHHHHHHhcCceee
Confidence 7889999999999997 999777777777765 2 6777777766 455655555555444333
No 196
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=90.67 E-value=0.63 Score=33.00 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=36.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592 88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF 150 (183)
Q Consensus 88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~ 150 (183)
.-|..++|+. |+.....|.+- ++.+-.+.+....-+.+.++.+++..+..|
T Consensus 3 ~iY~~~~C~~-crkA~~~L~~~-----------~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~ 53 (132)
T PRK13344 3 KIYTISSCTS-CKKAKTWLNAH-----------QLSYKEQNLGKEPLTKEEILAILTKTENGI 53 (132)
T ss_pred EEEeCCCCHH-HHHHHHHHHHc-----------CCCeEEEECCCCCCCHHHHHHHHHHhCCCH
Confidence 3467899997 99966555542 555666665543468899999999987554
No 197
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=90.48 E-value=0.61 Score=29.65 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=26.0
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
.+.-++-|..+|||. |......|.+. ++.+..+.++.
T Consensus 6 ~~~~V~ly~~~~Cp~-C~~ak~~L~~~-----------gi~y~~idi~~ 42 (79)
T TIGR02190 6 KPESVVVFTKPGCPF-CAKAKATLKEK-----------GYDFEEIPLGN 42 (79)
T ss_pred CCCCEEEEECCCCHh-HHHHHHHHHHc-----------CCCcEEEECCC
Confidence 334456778999998 99977777532 56666777763
No 198
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=90.19 E-value=1 Score=27.88 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++-|..+|||. |......|.+. ++.+..+.++
T Consensus 3 v~lys~~~Cp~-C~~ak~~L~~~-----------~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPF-CARAKAALQEN-----------GISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHH-HHHHHHHHHHc-----------CCCcEEEECC
Confidence 45567899998 99986666642 5666667766
No 199
>KOG1752|consensus
Probab=89.01 E-value=2.4 Score=28.83 Aligned_cols=51 Identities=18% Similarity=0.471 Sum_probs=31.0
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
.++| |-|--+|||. |... +++..++ ++....+.+|...+ ..++++++.+..
T Consensus 13 ~~~V-VifSKs~C~~-c~~~----k~ll~~~-------~v~~~vvELD~~~~-g~eiq~~l~~~t 63 (104)
T KOG1752|consen 13 ENPV-VIFSKSSCPY-CHRA----KELLSDL-------GVNPKVVELDEDED-GSEIQKALKKLT 63 (104)
T ss_pred cCCE-EEEECCcCch-HHHH----HHHHHhC-------CCCCEEEEccCCCC-cHHHHHHHHHhc
Confidence 3444 4466799998 9983 3333332 45555666665433 347777777664
No 200
>KOG0913|consensus
Probab=88.58 E-value=0.14 Score=39.66 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=33.5
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE 132 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~ 132 (183)
+|.|. |.|.++|||. |..-.|++.++..--.+- .-++..|-|+++|.
T Consensus 39 ~gewm-i~~~ap~~ps-c~~~~~~~~~~a~~s~dL--~v~va~VDvt~npg 85 (248)
T KOG0913|consen 39 TGEWM-IEFGAPWCPS-CSDLIPHLENFATVSLDL--GVKVAKVDVTTNPG 85 (248)
T ss_pred chHHH-HHhcCCCCcc-ccchHHHHhccCCccCCC--ceeEEEEEEEeccc
Confidence 56664 6788999997 999999999987643332 33566666676654
No 201
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=87.21 E-value=1.1 Score=28.66 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
|..|+...||. |....+.+.++..... +++.+....+.
T Consensus 1 i~~f~d~~Cp~-C~~~~~~l~~~~~~~~-----~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPY-CYLFEPELEKLLYADD-----GGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHh-HHhhhHHHHHHHhhcC-----CcEEEEEeccc
Confidence 46788999998 9999999999974332 25666655443
No 202
>KOG0191|consensus
Probab=87.18 E-value=1.5 Score=36.68 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=34.8
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
....++.|.+.||+. |+...|...++...++.. ..+.+..+..+
T Consensus 162 ~~~~lv~f~aPwc~~-ck~l~~~~~~~a~~~~~~---~~v~~~~~d~~ 205 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGH-CKKLAPEWEKLAKLLKSK---ENVELGKIDAT 205 (383)
T ss_pred CcceEEEEeccccHH-hhhcChHHHHHHHHhccC---cceEEEeeccc
Confidence 356788889999997 999999999999988642 36777766544
No 203
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=86.90 E-value=4 Score=25.63 Aligned_cols=22 Identities=18% Similarity=0.529 Sum_probs=18.4
Q ss_pred EcCCCCCCcHHHHHHHHHHHHHh
Q psy17592 91 GFTHCPDICPDELEKMAAVVNKI 113 (183)
Q Consensus 91 ~~t~C~~~C~~~~~~l~~l~~~~ 113 (183)
..++||. |+.....++++..++
T Consensus 6 ~~~~C~~-C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 6 FSPGCPY-CPELVQLLKEAAEEL 27 (76)
T ss_dssp ECSSCTT-HHHHHHHHHHHHHHT
T ss_pred eCCCCCC-cHHHHHHHHHHHHhc
Confidence 4777998 999888888888875
No 204
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=86.87 E-value=1.2 Score=30.91 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=38.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGL 153 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l 153 (183)
+--|+.+.|.. |+.....|++- +-..+++-+.-+| -+.+.+.++++..|..|..+
T Consensus 3 itiy~~p~C~t-~rka~~~L~~~---------gi~~~~~~y~~~~--~s~~eL~~~l~~~g~~~~~l 57 (117)
T COG1393 3 ITIYGNPNCST-CRKALAWLEEH---------GIEYTFIDYLKTP--PSREELKKILSKLGDGVEEL 57 (117)
T ss_pred EEEEeCCCChH-HHHHHHHHHHc---------CCCcEEEEeecCC--CCHHHHHHHHHHcCccHHHH
Confidence 34578999997 99987777664 2234555555554 58899999999988666444
No 205
>PRK10824 glutaredoxin-4; Provisional
Probab=86.18 E-value=1.7 Score=30.15 Aligned_cols=49 Identities=10% Similarity=0.213 Sum_probs=29.7
Q ss_pred CCCEEEEEEEc----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 82 LGKWALIYFGF----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 82 ~gk~vll~f~~----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
..+.|+|+--. +|||. |......|.++ ++.+-.+.++ +++ .+++.+++.
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpy-c~~ak~lL~~~-----------~i~~~~idi~---~d~-~~~~~l~~~ 65 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGF-SAQAVQALSAC-----------GERFAYVDIL---QNP-DIRAELPKY 65 (115)
T ss_pred hcCCEEEEECCCCCCCCCch-HHHHHHHHHHc-----------CCCceEEEec---CCH-HHHHHHHHH
Confidence 34566666544 49998 99977766664 2344445555 233 466666665
No 206
>KOG4277|consensus
Probab=86.04 E-value=0.15 Score=41.07 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=26.0
Q ss_pred CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCC
Q psy17592 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116 (183)
Q Consensus 84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~ 116 (183)
..-+|.|+|+||.. |+...|...++-..+++-
T Consensus 44 diW~VdFYAPWC~H-CKkLePiWdeVG~elkdi 75 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAH-CKKLEPIWDEVGHELKDI 75 (468)
T ss_pred CeEEEEeechhhhh-cccccchhHHhCcchhhc
Confidence 45689999999997 999999988886665543
No 207
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.70 E-value=3.6 Score=31.84 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=34.5
Q ss_pred cCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhC
Q psy17592 70 DCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115 (183)
Q Consensus 70 d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~ 115 (183)
..++..+...+..++++++.|.-..||. |...++.|.+.+....+
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~-C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPY-CKEAFPELKKKYIDDGK 115 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCcc-HHHHHHHHHHHhhhcCC
Confidence 3455555555666789999999999998 99999999996665543
No 208
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.70 E-value=1.9 Score=27.43 Aligned_cols=44 Identities=18% Similarity=0.389 Sum_probs=30.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
+-|++..||. |......|+++.- +..+|-|. .+-..+++|++-.
T Consensus 5 ~lfgsn~Cpd-ca~a~eyl~rl~v---------~yd~VeIt-----~Sm~NlKrFl~lR 48 (85)
T COG4545 5 KLFGSNLCPD-CAPAVEYLERLNV---------DYDFVEIT-----ESMANLKRFLHLR 48 (85)
T ss_pred eeeccccCcc-hHHHHHHHHHcCC---------Cceeeehh-----hhhhhHHHHHhhh
Confidence 4588999998 9998888887733 34555553 4567777777643
No 209
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=85.28 E-value=3.1 Score=36.63 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=30.1
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.++..+-.|..++||. |+..-..++++.... +++..-.|...
T Consensus 475 ~~~~~i~v~~~~~C~~-Cp~~~~~~~~~~~~~------~~i~~~~i~~~ 516 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTL-CPDVVLAAQRIASLN------PNVEAEMIDVS 516 (555)
T ss_pred CCCeEEEEEECCCCCC-cHHHHHHHHHHHHhC------CCceEEEEECc
Confidence 3445566788999998 998888887777653 35776666554
No 210
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=84.76 E-value=3.7 Score=32.74 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=33.9
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
++.+|||+|+-..++. |...-..|..|+.+|. .+.|+-|...
T Consensus 145 ~~~~VVVHiY~~~~~~-C~~mn~~L~~LA~kyp------~vKFvkI~a~ 186 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPR-CEIMNSCLECLARKYP------EVKFVKIRAS 186 (265)
T ss_dssp TT-EEEEEEE-TTSCC-HHHHHHHHHHHHHH-T------TSEEEEEEEC
T ss_pred CCcEEEEEEEeCCCch-HHHHHHHHHHHHHhCC------ceEEEEEehh
Confidence 4568999999999997 9999999999999975 6888887654
No 211
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=83.93 E-value=3.7 Score=35.77 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=35.8
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~ 142 (183)
+.++.-+..|...+||+ |+.....++++... .+++..-.|... +.++...+|
T Consensus 114 ~~~~~~i~~fv~~~Cp~-Cp~~v~~~~~~a~~------~~~i~~~~id~~---~~~~~~~~~ 165 (517)
T PRK15317 114 LDGDFHFETYVSLSCHN-CPDVVQALNLMAVL------NPNITHTMIDGA---LFQDEVEAR 165 (517)
T ss_pred cCCCeEEEEEEcCCCCC-cHHHHHHHHHHHHh------CCCceEEEEEch---hCHhHHHhc
Confidence 34555688899999998 99988888888775 236666666332 455555544
No 212
>PRK10026 arsenate reductase; Provisional
Probab=83.84 E-value=1.7 Score=31.23 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP 148 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~ 148 (183)
+..++.+.|.. |+..+..|++- +-.++++-+--+| -+.+.++.+++..+.
T Consensus 4 i~iY~~p~Cst-~RKA~~wL~~~---------gi~~~~~d~~~~p--pt~~eL~~~l~~~g~ 53 (141)
T PRK10026 4 ITIYHNPACGT-SRNTLEMIRNS---------GTEPTIIHYLETP--PTRDELVKLIADMGI 53 (141)
T ss_pred EEEEeCCCCHH-HHHHHHHHHHC---------CCCcEEEeeeCCC--cCHHHHHHHHHhCCC
Confidence 44577999997 99988777764 1134444444443 588999999998874
No 213
>KOG0914|consensus
Probab=82.37 E-value=3.4 Score=32.03 Aligned_cols=44 Identities=20% Similarity=0.110 Sum_probs=33.6
Q ss_pred CCCeeecCccCC--CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCC
Q psy17592 72 NNKPVKSEDFLG--KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116 (183)
Q Consensus 72 ~G~~v~l~~~~g--k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~ 116 (183)
+++......-++ +.=||.|++.|.|. |....|.+.++..+|...
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~-Cv~~spvfaeLS~kyn~~ 176 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPK-CVRFSPVFAELSIKYNNN 176 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChh-hcccccccHHHHHHhCCC
Confidence 455544333344 34589999999998 999999999999998765
No 214
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=82.11 E-value=11 Score=30.08 Aligned_cols=78 Identities=19% Similarity=0.060 Sum_probs=47.3
Q ss_pred CCCeEEEcCCCCeeecCccCC-CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHH
Q psy17592 63 GGKFELVDCNNKPVKSEDFLG-KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGK 141 (183)
Q Consensus 63 ~p~f~l~d~~G~~v~l~~~~g-k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~ 141 (183)
.|-|+++|.+|+++-.+.-.| +.+-++| -. =......|.++..+-.+- +.+++|+.|++| .+-+
T Consensus 82 VPVFtItn~~G~pvl~s~~~~~~~~gvf~-----s~-qedA~afL~~lk~~~p~l--~~~~kV~pvsL~-------~vYk 146 (270)
T TIGR00995 82 TSVFTVSNAQNEFVLASDNDGEKSIGLLC-----FR-QEDAEAFLAQLRKRKPEV--GSQAKVVPITLD-------QVYK 146 (270)
T ss_pred CceEEEEcCCCCeEEEECCCCCceEEEEE-----CC-HHHHHHHHHHHHhhCccc--cCCceEEEEEHH-------HHHH
Confidence 389999999999887665545 5555433 22 111234555655443322 457999999987 2223
Q ss_pred HHHHhCCCeEEecCC
Q psy17592 142 YVKEFSPKFIGLTGT 156 (183)
Q Consensus 142 ~~~~~~~~~~~l~~~ 156 (183)
. +..+..|.++.+.
T Consensus 147 l-~~e~l~F~fiP~~ 160 (270)
T TIGR00995 147 L-KVEGIGFRFLPDP 160 (270)
T ss_pred H-hhcCccEEEeCCH
Confidence 3 3345778887654
No 215
>KOG4498|consensus
Probab=81.90 E-value=2.8 Score=31.54 Aligned_cols=55 Identities=15% Similarity=0.329 Sum_probs=43.5
Q ss_pred EcCCCCeeecCcc-C-CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEE
Q psy17592 69 VDCNNKPVKSEDF-L-GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFIS 128 (183)
Q Consensus 69 ~d~~G~~v~l~~~-~-gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is 128 (183)
.|..|+.+...++ + ++.|+...--..|- +|+.+...|..+..-+++. ++..+.|.
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCv-lCR~~aadLa~l~~~ld~~----Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCV-LCREEAADLASLKDLLDEL----GVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEE-EeHHHHHHHHHHHHHHHHh----CCEEEEEe
Confidence 5778999998887 3 45677777789999 5999999999996666655 77777775
No 216
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=81.75 E-value=9.8 Score=25.46 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=32.9
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHH
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAA 162 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (183)
...+|.|+.|-..++.+.+..++++++.++..+.++.+++..
T Consensus 32 kaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~ 73 (99)
T PRK01018 32 KAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGT 73 (99)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHH
Confidence 688889988866677888888899999888776677777443
No 217
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=81.27 E-value=4.4 Score=27.68 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=34.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592 88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK 149 (183)
Q Consensus 88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~ 149 (183)
..|..+.|.. |+..+..|++- ++.+..+.+-...-+.+++..+++..+.+
T Consensus 2 ~iy~~~~C~t-~rkA~~~L~~~-----------~i~~~~~di~~~~~t~~el~~~l~~~~~~ 51 (112)
T cd03034 2 TIYHNPRCSK-SRNALALLEEA-----------GIEPEIVEYLKTPPTAAELRELLAKLGIS 51 (112)
T ss_pred EEEECCCCHH-HHHHHHHHHHC-----------CCCeEEEecccCCcCHHHHHHHHHHcCCC
Confidence 3567899997 99977666653 44444554432235889999999988743
No 218
>PRK10853 putative reductase; Provisional
Probab=81.21 E-value=4.2 Score=28.18 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
+.-|+.+.|.. |+..+..|.+- ++.+-.+.+-...-+.+.+++++++.|
T Consensus 2 i~iy~~~~C~t-~rkA~~~L~~~-----------~i~~~~~d~~k~p~s~~eL~~~l~~~g 50 (118)
T PRK10853 2 VTLYGIKNCDT-IKKARRWLEAQ-----------GIDYRFHDYRVDGLDSELLQGFIDELG 50 (118)
T ss_pred EEEEcCCCCHH-HHHHHHHHHHc-----------CCCcEEeehccCCcCHHHHHHHHHHcC
Confidence 34577899997 99987777653 455555544322358899999998876
No 219
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=80.69 E-value=5.3 Score=27.37 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=34.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC
Q psy17592 88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP 148 (183)
Q Consensus 88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~ 148 (183)
..|..+.|.. |+.....|++- ++.+..+.+-...-+.++++.+++..|.
T Consensus 2 ~iy~~~~C~t-~rkA~~~L~~~-----------~i~~~~~di~~~p~t~~el~~~l~~~g~ 50 (114)
T TIGR00014 2 TIYHNPRCSK-SRNTLALLEDK-----------GIEPEVVKYLKNPPTKSELEAIFAKLGL 50 (114)
T ss_pred EEEECCCCHH-HHHHHHHHHHC-----------CCCeEEEeccCCCcCHHHHHHHHHHcCC
Confidence 3567899997 99987777763 3444444443333588999999998764
No 220
>PTZ00062 glutaredoxin; Provisional
Probab=80.40 E-value=3.8 Score=31.34 Aligned_cols=49 Identities=6% Similarity=0.062 Sum_probs=29.4
Q ss_pred CCCEEEEEEEc----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 82 LGKWALIYFGF----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 82 ~gk~vll~f~~----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
..++|+|+--. ++||. |+.....|.+. ++.+..+.++ ++ +.+++.++++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~-C~~~k~~L~~~-----------~i~y~~~DI~---~d-~~~~~~l~~~ 163 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRF-SNAVVNMLNSS-----------GVKYETYNIF---ED-PDLREELKVY 163 (204)
T ss_pred hcCCEEEEEccCCCCCCChh-HHHHHHHHHHc-----------CCCEEEEEcC---CC-HHHHHHHHHH
Confidence 45667776654 57887 88765555543 4666666666 22 3455556555
No 221
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=80.18 E-value=5 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=20.4
Q ss_pred cCCCEEEEEEEcC----CCCCCcHHHH--HHHHHHH
Q psy17592 81 FLGKWALIYFGFT----HCPDICPDEL--EKMAAVV 110 (183)
Q Consensus 81 ~~gk~vll~f~~t----~C~~~C~~~~--~~l~~l~ 110 (183)
-.+|+++|++... ||.. |+..+ |.+.++.
T Consensus 15 ~e~K~llVylhs~~~~~~~~f-c~~~l~~~~v~~~l 49 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEF-CRNTLCAPEVIEYI 49 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHH-HHHHcCCHHHHHHH
Confidence 3589999999999 6665 76654 4444444
No 222
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=80.10 E-value=11 Score=25.54 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=32.1
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcC
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYR 168 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 168 (183)
.+.+|.++.|-..++.+.+.++++.++.++..+ ++.++ +...+|
T Consensus 33 k~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~-~t~~e---Lg~a~G 76 (104)
T PRK05583 33 KVYLIIISNDISENSKNKFKNYCNKYNIPYIEG-YSKEE---LGNAIG 76 (104)
T ss_pred CceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe-cCHHH---HHHHhC
Confidence 678888888877778888888888888777665 55555 444444
No 223
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=80.03 E-value=10 Score=25.85 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=32.1
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHH
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAA 162 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (183)
.+.+|.|+-|-+..+.+.+..+++.++.++....++.+++..
T Consensus 41 kaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~ 82 (108)
T PTZ00106 41 KAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGT 82 (108)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHH
Confidence 688888888876667788888888888888766677776433
No 224
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=79.89 E-value=6 Score=27.16 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=32.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 88 IYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 88 l~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
.-|..+.|+. |+.....|.+- +-.++++-+.-+| -+.+.++.++++.|
T Consensus 3 ~iy~~p~C~~-crkA~~~L~~~---------gi~~~~~d~~~~p--~s~~eL~~~l~~~g 50 (113)
T cd03033 3 IFYEKPGCAN-NARQKALLEAA---------GHEVEVRDLLTEP--WTAETLRPFFGDLP 50 (113)
T ss_pred EEEECCCCHH-HHHHHHHHHHc---------CCCcEEeehhcCC--CCHHHHHHHHHHcC
Confidence 3567899997 99877666553 1134555554443 58899999999765
No 225
>PRK06683 hypothetical protein; Provisional
Probab=79.77 E-value=11 Score=24.28 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=34.7
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEe
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS 172 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~ 172 (183)
.+.+|.|.-|-+..+.+.+.+.++.++.++.... +.++ |.+..|+.+.
T Consensus 27 kaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~-t~~e---LG~A~G~~~~ 74 (82)
T PRK06683 27 IVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE-SVRK---LGKVAGIQVG 74 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC-CHHH---HHHHhCCccc
Confidence 6888888888666677788888898888887765 5555 5555555543
No 226
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=79.20 E-value=20 Score=26.17 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=10.1
Q ss_pred EcCCCCeeec-Ccc-CCCEEEEEE
Q psy17592 69 VDCNNKPVKS-EDF-LGKWALIYF 90 (183)
Q Consensus 69 ~d~~G~~v~l-~~~-~gk~vll~f 90 (183)
.+.+-=++++ ++- ..+++-+.+
T Consensus 62 ~~L~~f~VNL~~~~~~~rylkv~i 85 (162)
T PRK07021 62 FPLETFTVNLQPDDDADRVLYVGL 85 (162)
T ss_pred EecCCEEEEcCCCCCCceEEEEEE
Confidence 3334345666 332 345654444
No 227
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=78.98 E-value=2.9 Score=30.78 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
+|.+|+..-||. |-...+.|.++.+++.+- .+....+.+.+
T Consensus 1 ~i~~~~D~~Cp~-cy~~~~~l~~l~~~~~~~----~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPW-CYLASPRLRKLRAEYPDV----EIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHH-HHHHHHHHHHHHHHHTTC----EEEEEEESSST
T ss_pred CEEEEEeCCCHH-HHHHHHHHHHHHHHhcCC----cEEEecccccc
Confidence 467888999998 999999999999998322 45555555554
No 228
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=78.87 E-value=7.4 Score=27.32 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=34.7
Q ss_pred EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
++..|+...|.. |+.....|.+- ++.+-.+.+-.+.-+.+.++.+++..+
T Consensus 2 ~i~iY~~p~Cst-~RKA~~~L~~~-----------gi~~~~~d~~~~p~t~~eL~~~l~~~g 51 (126)
T TIGR01616 2 TIIFYEKPGCAN-NARQKAALKAS-----------GHDVEVQDILKEPWHADTLRPYFGNKP 51 (126)
T ss_pred eEEEEeCCCCHH-HHHHHHHHHHC-----------CCCcEEEeccCCCcCHHHHHHHHHHcC
Confidence 345677899997 99977777664 444445544333358899999999864
No 229
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=78.09 E-value=8.7 Score=29.19 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=38.6
Q ss_pred CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF 150 (183)
Q Consensus 84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~ 150 (183)
.-.+..|.-..|+. |...+..+.. . ...+.+..|..+ .+.+.++.|+..++++-
T Consensus 109 ~~rlalFvkd~C~~-C~~~~~~l~a-----~----~~~~Diylvgs~---~dD~~Ir~WA~~~~Idp 162 (200)
T TIGR03759 109 GGRLALFVKDDCVA-CDARVQRLLA-----D----NAPLDLYLVGSQ---GDDERIRQWANRHQIDP 162 (200)
T ss_pred CCeEEEEeCCCChH-HHHHHHHHhc-----C----CCceeEEEecCC---CCHHHHHHHHHHcCCCH
Confidence 34556666799997 9998777733 1 226778888644 45689999999998653
No 230
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=77.99 E-value=7.7 Score=33.77 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=34.1
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~ 142 (183)
+.++.-+..|....||+ |+.....++++.... +++..-.|... +.++.+.+|
T Consensus 115 ~~~~~~i~~f~~~~Cp~-Cp~~v~~~~~~a~~~------p~i~~~~id~~---~~~~~~~~~ 166 (515)
T TIGR03140 115 LNGPLHFETYVSLTCQN-CPDVVQALNQMALLN------PNISHTMIDGA---LFQDEVEAL 166 (515)
T ss_pred cCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhC------CCceEEEEEch---hCHHHHHhc
Confidence 34566688999999998 998777777776652 35665444322 445554444
No 231
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=76.41 E-value=15 Score=23.70 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=33.7
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
.+.+|.|+-|-+.++.+.+.++.+.++.++.. .++..+ |.+..|..
T Consensus 24 kakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~-~~t~~e---LG~A~G~~ 69 (82)
T PRK13601 24 NVLQVYIAKDAEEHVTKKIKELCEEKSIKIVY-IDTMKE---LGVMCGID 69 (82)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEE-eCCHHH---HHHHHCCc
Confidence 68889999887667788888888999988854 445555 55555543
No 232
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=76.14 E-value=14 Score=27.44 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=54.8
Q ss_pred CC-CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecC--CHH
Q psy17592 82 LG-KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTG--TVE 158 (183)
Q Consensus 82 ~g-k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~--~~~ 158 (183)
+| |-+++.+-.|=-|---..-.|.+.++..++++. ++.++.+|.. +...++.+++.++.+|..-.. -..
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~----gi~v~vvSNn----~e~RV~~~~~~l~v~fi~~A~KP~~~ 97 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEA----GIKVVVVSNN----KESRVARAAEKLGVPFIYRAKKPFGR 97 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhc----CCEEEEEeCC----CHHHHHhhhhhcCCceeecccCccHH
Confidence 45 566676655544422334468888998888876 7888888765 778999999999988866443 233
Q ss_pred HHHHHHhhcCeeE
Q psy17592 159 QVAAACKAYRVYF 171 (183)
Q Consensus 159 ~~~~~~~~~gv~~ 171 (183)
.+....+.+++..
T Consensus 98 ~fr~Al~~m~l~~ 110 (175)
T COG2179 98 AFRRALKEMNLPP 110 (175)
T ss_pred HHHHHHHHcCCCh
Confidence 4555666666553
No 233
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=76.00 E-value=4.6 Score=27.36 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=32.7
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecC
Q psy17592 90 FGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTG 155 (183)
Q Consensus 90 f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~ 155 (183)
|..+.|.. |+..+..|.+- ++.+-.+.+-...-+.+++.++++..+..+..+..
T Consensus 1 Y~~~~C~t-~rka~~~L~~~-----------gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin 54 (110)
T PF03960_consen 1 YGNPNCST-CRKALKWLEEN-----------GIEYEFIDYKKEPLSREELRELLSKLGNGPDDLIN 54 (110)
T ss_dssp EE-TT-HH-HHHHHHHHHHT-----------T--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-
T ss_pred CcCCCCHH-HHHHHHHHHHc-----------CCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhc
Confidence 45678886 88877776652 56666676653345889999999999965544433
No 234
>PHA03075 glutaredoxin-like protein; Provisional
Probab=74.57 E-value=2.8 Score=28.98 Aligned_cols=63 Identities=17% Similarity=0.354 Sum_probs=39.8
Q ss_pred CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC-------CCcHHHHHHHHHHhCCCeE
Q psy17592 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE-------RDTPELVGKYVKEFSPKFI 151 (183)
Q Consensus 84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~-------~d~~~~~~~~~~~~~~~~~ 151 (183)
|.+||-|+-+-|+ +|......|.++..+|.-. +|.+++.=..+. ...-+.+..+.+.+|..+.
T Consensus 2 K~tLILfGKP~C~-vCe~~s~~l~~ledeY~il----rVNIlSfFsK~g~v~~lg~d~~y~lInn~~~~lgne~v 71 (123)
T PHA03075 2 KKTLILFGKPLCS-VCESISEALKELEDEYDIL----RVNILSFFSKDGQVKVLGMDKGYTLINNFFKHLGNEYV 71 (123)
T ss_pred CceEEEeCCcccH-HHHHHHHHHHHhhccccEE----EEEeeeeeccCCceEEEecccceehHHHHHHhhcccEE
Confidence 5689999999999 5999999898887776432 444444322211 0233455666666664443
No 235
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=74.03 E-value=20 Score=23.07 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=32.3
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
...+|.|+-|-+..+...+...+++++.++..+. +.++ +.+..|..
T Consensus 27 kaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~-s~~e---LG~a~G~~ 72 (82)
T PRK13602 27 SVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD-SMKK---LGKACGIE 72 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC-CHHH---HHHHHCCC
Confidence 6888888888655677778888888888887765 5555 44444433
No 236
>PRK07714 hypothetical protein; Provisional
Probab=73.91 E-value=19 Score=24.02 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=30.3
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcC
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYR 168 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 168 (183)
.+.+|.++.|-..++.+.+..+++.++.++... ++.++ +.+.+|
T Consensus 34 ~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~-~sk~e---LG~a~G 77 (100)
T PRK07714 34 KAKLVLLSEDASVNTTKKITDKCTYYNVPMRKV-ENRQQ---LGHAIG 77 (100)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe-CCHHH---HHHHhC
Confidence 577888888866667777777778878777654 45555 444444
No 237
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=72.81 E-value=7.8 Score=30.66 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=40.8
Q ss_pred CCeEEEcCCCCeeecCc-cCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 64 GKFELVDCNNKPVKSED-FLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~-~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
|+|.-++.+|+.+++.+ ++||+.||..+.+--...|....- .....++.... ..++++|-|++-
T Consensus 102 P~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~--~p~~~~~~~~~-~~~~q~v~In~~ 166 (252)
T PF05176_consen 102 PNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWT--SPFLEDFLQEP-YGRVQIVEINLI 166 (252)
T ss_pred CCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHh--hHHHHHHhhCC-CCceEEEEEecc
Confidence 99999999999888776 599998777655433332444321 12333333221 227999999986
No 238
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=70.24 E-value=13 Score=22.19 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=8.5
Q ss_pred ccCCCCCCCCCCCCchhHHHH
Q psy17592 4 YSSELPVRNKTDKFPITWKSV 24 (183)
Q Consensus 4 ~s~~~~~~~~~~~~~~~~~~l 24 (183)
||+.++...+..+++.-|+.+
T Consensus 1 Ms~~~~~~~~~~~k~~E~~~f 21 (56)
T PF06796_consen 1 MSSQPKSESDKSTKRSELKAF 21 (56)
T ss_pred CCCCCCCccccchhHHHHHHH
Confidence 344444444333333334333
No 239
>KOG3414|consensus
Probab=69.09 E-value=24 Score=24.98 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=33.8
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
..|.|+|-|+-.|-|. |...-..|.++..++.+- ..+..+.+|
T Consensus 22 ~~rlvViRFGr~~Dp~-C~~mD~~L~~i~~~vsnf-----a~Iylvdid 64 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPT-CMKMDELLSSIAEDVSNF-----AVIYLVDID 64 (142)
T ss_pred cceEEEEEecCCCCch-HhhHHHHHHHHHHHHhhc-----eEEEEEecc
Confidence 4589999999999996 999999999999887642 344445555
No 240
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=68.37 E-value=17 Score=31.97 Aligned_cols=66 Identities=9% Similarity=-0.029 Sum_probs=39.7
Q ss_pred cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592 78 SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGL 153 (183)
Q Consensus 78 l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l 153 (183)
+..+++.+.|+.|+...|.. |......|+++..- .+.+.+..+..+ ++.+..++|.-+.-+.+..+
T Consensus 361 ~~~l~~~v~l~~~~~~~~~~-~~e~~~~l~e~~~~------s~~i~~~~~~~~---~~~~~~~~~~v~~~P~~~i~ 426 (555)
T TIGR03143 361 FGRLENPVTLLLFLDGSNEK-SAELQSFLGEFASL------SEKLNSEAVNRG---EEPESETLPKITKLPTVALL 426 (555)
T ss_pred HHhcCCCEEEEEEECCCchh-hHHHHHHHHHHHhc------CCcEEEEEeccc---cchhhHhhcCCCcCCEEEEE
Confidence 34567888899999999986 98877777776642 335666554433 23344444443333444443
No 241
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=66.48 E-value=7.7 Score=24.66 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGL 153 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l 153 (183)
|+.|.-..|+- |......|.++... ..+.+-.|.++ ++++ +.++|+...|.+
T Consensus 2 l~l~~k~~C~L-C~~a~~~L~~~~~~-------~~~~l~~vDI~---~d~~----l~~~Y~~~IPVl 53 (81)
T PF05768_consen 2 LTLYTKPGCHL-CDEAKEILEEVAAE-------FPFELEEVDID---EDPE----LFEKYGYRIPVL 53 (81)
T ss_dssp EEEEE-SSSHH-HHHHHHHHHHCCTT-------STCEEEEEETT---TTHH----HHHHSCTSTSEE
T ss_pred EEEEcCCCCCh-HHHHHHHHHHHHhh-------cCceEEEEECC---CCHH----HHHHhcCCCCEE
Confidence 67788999995 99987777775432 25888888888 4455 445666555544
No 242
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=66.33 E-value=5.8 Score=27.85 Aligned_cols=8 Identities=25% Similarity=0.609 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy17592 21 WKSVAVTA 28 (183)
Q Consensus 21 ~~~l~~~~ 28 (183)
|.++++++
T Consensus 2 W~l~~iii 9 (130)
T PF12273_consen 2 WVLFAIII 9 (130)
T ss_pred eeeHHHHH
Confidence 33343333
No 243
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=65.79 E-value=13 Score=27.56 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=21.8
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHhh
Q psy17592 89 YFGFTHCPDICPDELEKMAAVVNKID 114 (183)
Q Consensus 89 ~f~~t~C~~~C~~~~~~l~~l~~~~~ 114 (183)
.|+..-||. |-.-.+.|.++.++++
T Consensus 3 ~~~D~~cP~-cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPW-CYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCcc-HHHHHHHHHHHHHhCC
Confidence 466788998 9999999999999885
No 244
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.47 E-value=11 Score=33.97 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=29.6
Q ss_pred CCCEEEEEEEcCCCCCCcHHHH------HHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 82 LGKWALIYFGFTHCPDICPDEL------EKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~------~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
.+||++|...++||-- |+-.. |.+.++.+ =.||.|-+|-
T Consensus 42 edkPIflSIGys~CHW-ChVM~~ESf~d~eiA~~lN----------~~FV~IKVDR 86 (667)
T COG1331 42 EDKPILLSIGYSTCHW-CHVMAHESFEDPEIAAILN----------ENFVPVKVDR 86 (667)
T ss_pred hCCCEEEEeccccccc-hHHHhhhcCCCHHHHHHHH----------hCceeeeECh
Confidence 5899999999999996 98754 44444443 2588999983
No 245
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=64.25 E-value=36 Score=23.17 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=34.5
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
..++++|+=..|+|| +.......+++......+ ++.+..+.+- +..+.-...++++|
T Consensus 18 ~~~~~~iFKHSt~C~-IS~~a~~~~e~~~~~~~~-----~~~~y~l~v~---~~R~vSn~IAe~~~ 74 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCP-ISAMALREFEKFWEESPD-----EIPVYYLDVI---EYRPVSNAIAEDFG 74 (105)
T ss_dssp --SEEEEEEE-TT-H-HHHHHHHHHHHHHHHHT---------EEEEEGG---GGHHHHHHHHHHHT
T ss_pred ccCcEEEEEeCCCCh-hhHHHHHHHHHHhhcCCc-----cceEEEEEEE---eCchhHHHHHHHhC
Confidence 468999999999999 588888888888887542 3778888765 33333334444443
No 246
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=63.94 E-value=31 Score=22.41 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=37.5
Q ss_pred HHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHH-HHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592 107 AAVVNKIDGQPNVPNITPIFISVDPERDTPEL-VGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 107 ~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
.+..+.+... ...++.++-|-..++... +..+.++++.++..+. +.++ +.+.+|..
T Consensus 21 ~~v~k~l~~~----~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~-s~~e---LG~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKG----KAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP-SKEE---LGRACGKK 77 (95)
T ss_dssp HHHHHHHHTT----CESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES-HHHH---HHHHTTSS
T ss_pred HHHHHHHHcC----CCcEEEEcCCCChhhhcccchhheeccceeEEEEC-CHHH---HHHHHCCC
Confidence 3444555533 788999988876666666 7788898888886664 3333 66666654
No 247
>KOG2961|consensus
Probab=62.57 E-value=60 Score=23.92 Aligned_cols=84 Identities=12% Similarity=0.006 Sum_probs=52.1
Q ss_pred cCCCeEEEcCCCCeeecCccCC-CEEEEE----EEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC-CCC-
Q psy17592 62 IGGKFELVDCNNKPVKSEDFLG-KWALIY----FGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP-ERD- 134 (183)
Q Consensus 62 ~~p~f~l~d~~G~~v~l~~~~g-k~vll~----f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp-~~d- 134 (183)
..|..++++.+--++...+++| |.+++. ..++.-..+-+.++|.+++++..|.++ ++.+++=|... +.|
T Consensus 21 ~~Ph~~vptf~~ip~~I~~~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek----~i~v~SNsaG~~~~D~ 96 (190)
T KOG2961|consen 21 VLPHVSVPTFRYIPWEILKRKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEK----DIAVFSNSAGLTEYDH 96 (190)
T ss_pred eccccccCccccCCcchhhccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcc----cEEEEecCcCccccCC
Confidence 3466666666655666666667 666664 334444446788999999999999866 67666654432 112
Q ss_pred cHHHHHHHHHHhCCC
Q psy17592 135 TPELVGKYVKEFSPK 149 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~ 149 (183)
+-+.++.+-++-|++
T Consensus 97 d~s~Ak~le~k~gIp 111 (190)
T KOG2961|consen 97 DDSKAKALEAKIGIP 111 (190)
T ss_pred chHHHHHHHHhhCCc
Confidence 335555565555543
No 248
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=61.99 E-value=13 Score=31.53 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
|+-|..+|||. |...-..|.+. ++.+-.|.+|
T Consensus 4 V~vys~~~Cp~-C~~aK~~L~~~-----------gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPF-CDLAKSWFGAN-----------DIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHH-HHHHHHHHHHC-----------CCCeEEEECC
Confidence 55678999998 99866666553 5666677777
No 249
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=61.02 E-value=41 Score=24.28 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=20.5
Q ss_pred EEEEEEc-----CCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 86 ALIYFGF-----THCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 86 vll~f~~-----t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
|+||+.. .+||+ |......|+++ +|.+--+.++
T Consensus 2 VvlYttsl~giR~t~~~-C~~ak~iL~~~-----------~V~~~e~DVs 39 (147)
T cd03031 2 VVLYTTSLRGVRKTFED-CNNVRAILESF-----------RVKFDERDVS 39 (147)
T ss_pred EEEEEcCCcCCCCcChh-HHHHHHHHHHC-----------CCcEEEEECC
Confidence 4455543 28998 98866666543 4556566665
No 250
>PRK07283 hypothetical protein; Provisional
Probab=60.98 E-value=46 Score=22.09 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=24.1
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHH
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQ 159 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (183)
.+.+|.++-|...++.+.+.+.++.++.++..+. +.++
T Consensus 34 k~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~-t~~e 71 (98)
T PRK07283 34 QAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVF-STLE 71 (98)
T ss_pred CccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeC-CHHH
Confidence 5677777777655666666666666676665443 4444
No 251
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=60.09 E-value=14 Score=26.80 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q psy17592 18 PITWKSVAVTAVTGGGILFYMWN 40 (183)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~ 40 (183)
++.|+++++++.++++....++.
T Consensus 7 ~Rl~~il~~~a~l~~a~~l~Lya 29 (153)
T COG2332 7 KRLWIILAGLAGLALAVGLVLYA 29 (153)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444443433
No 252
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=60.02 E-value=41 Score=24.71 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=52.5
Q ss_pred CCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHH-hhCCCCCCCeeEEEE-EeCCC-CCcHHHHHHHHHHhC-
Q psy17592 72 NNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNK-IDGQPNVPNITPIFI-SVDPE-RDTPELVGKYVKEFS- 147 (183)
Q Consensus 72 ~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~-~~~~~~~~~v~~v~I-s~dp~-~d~~~~~~~~~~~~~- 147 (183)
+.+.++..++.||+-+|...|-.-.. -...-|.+..+.+. +.. ++++..+| +.|.. --+---++..+++..
T Consensus 26 ~y~~W~s~~l~GKVrviq~iAGr~sa-ke~N~~l~~aik~a~f~~----d~yqtttIiN~dDAi~gt~~fVrss~e~~kk 100 (160)
T PF09695_consen 26 SYQPWNSAQLPGKVRVIQHIAGRSSA-KEMNAPLIEAIKAAKFPH----DKYQTTTIINLDDAIWGTGGFVRSSAEDSKK 100 (160)
T ss_pred cccccCccccCCCEEEEEEeccCCch-hHhhHHHHHHHHHcCCCc----cceeEEEEEecccccccchHHHHHHHHHhhh
Confidence 34566778899999888877766553 55556777777665 443 37887777 56511 113345555555543
Q ss_pred -CCeEE-ecCCHHHHHHHHhhcCee
Q psy17592 148 -PKFIG-LTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 148 -~~~~~-l~~~~~~~~~~~~~~gv~ 170 (183)
.+|.. +.+.... +.+++++.
T Consensus 101 ~~p~s~~vlD~~G~---~~~aW~L~ 122 (160)
T PF09695_consen 101 EFPWSQFVLDSNGV---VRKAWQLQ 122 (160)
T ss_pred hCCCcEEEEcCCCc---eeccccCC
Confidence 35543 3443332 44455443
No 253
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=59.40 E-value=4.5 Score=31.26 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=9.7
Q ss_pred hhcCeeEeeCCCC
Q psy17592 165 KAYRVYFSAGPKD 177 (183)
Q Consensus 165 ~~~gv~~~~~~~~ 177 (183)
+.|.||+++.++.
T Consensus 195 ~~YrV~i~WVd~e 207 (217)
T PF07423_consen 195 KKYRVYIEWVDNE 207 (217)
T ss_pred ceEEEEEEEecCC
Confidence 3588999988754
No 254
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=58.92 E-value=34 Score=24.29 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=33.8
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
..|+++|-|+..|-|. |...=..|.++.++.+.- ..+..+.+|
T Consensus 19 ~drvvViRFG~d~d~~-Cm~mDeiL~~~a~~v~~~-----a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPV-CMQMDEILYKIAEKVKNF-----AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTTT-----EEEEEEETT
T ss_pred CceEEEEEeCCCCCcc-HHHHHHHHHHHHHHhhcc-----eEEEEEEcc
Confidence 4699999999999997 999999999999988642 455555665
No 255
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=56.58 E-value=27 Score=18.79 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHhCCCeEEecCCHHHHHHHHh
Q psy17592 135 TPELVGKYVKEFSPKFIGLTGTVEQVAAACK 165 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (183)
+.+.+++|++.+|+..+--....+++-+.++
T Consensus 5 s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSAKTRDELLKLAK 35 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 4588999999999877655445556555554
No 256
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=54.57 E-value=32 Score=25.18 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=44.6
Q ss_pred EEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 68 LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 68 l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
+-|.||. +|.+|..|...-+ ....|. .+...++++++.++ +..++.++.-|. ......+.|++.+
T Consensus 3 vsDIDGT-iT~SD~~G~i~~~-~G~d~~-------h~g~~~l~~~i~~~----GY~ilYlTaRp~-~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 3 VSDIDGT-ITKSDVLGHILPI-LGKDWT-------HPGAAELYRKIADN----GYKILYLTARPI-GQANRTRSWLAQH 67 (157)
T ss_pred EEeccCC-cCccchhhhhhhc-cCchhh-------hhcHHHHHHHHHHC----CeEEEEECcCcH-HHHHHHHHHHHHH
Confidence 5688885 7888887875322 333344 35577777877766 899999987753 2456777888877
No 257
>PHA02819 hypothetical protein; Provisional
Probab=54.07 E-value=31 Score=21.58 Aligned_cols=9 Identities=0% Similarity=-0.049 Sum_probs=3.5
Q ss_pred chhHHHHHH
Q psy17592 18 PITWKSVAV 26 (183)
Q Consensus 18 ~~~~~~l~~ 26 (183)
...|..+++
T Consensus 43 ~~~~~~~ii 51 (71)
T PHA02819 43 SFLRYYLII 51 (71)
T ss_pred ChhHHHHHH
Confidence 334443333
No 258
>PHA03054 IMV membrane protein; Provisional
Probab=52.92 E-value=38 Score=21.20 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=3.9
Q ss_pred chhHHHHHHH
Q psy17592 18 PITWKSVAVT 27 (183)
Q Consensus 18 ~~~~~~l~~~ 27 (183)
...|..++++
T Consensus 45 ~~~~~~~ii~ 54 (72)
T PHA03054 45 CWGWYWLIII 54 (72)
T ss_pred CchHHHHHHH
Confidence 3344433333
No 259
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=52.14 E-value=62 Score=22.84 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=28.5
Q ss_pred CCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCC
Q psy17592 120 PNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGT 156 (183)
Q Consensus 120 ~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~ 156 (183)
+++++++++.. .+.+.+.+.+++|++.+..+.++
T Consensus 23 d~f~v~~Lsa~---~n~~~L~~q~~~f~p~~v~i~~~ 56 (129)
T PF02670_consen 23 DKFEVVALSAG---SNIEKLAEQAREFKPKYVVIADE 56 (129)
T ss_dssp TTEEEEEEEES---STHHHHHHHHHHHT-SEEEESSH
T ss_pred CceEEEEEEcC---CCHHHHHHHHHHhCCCEEEEcCH
Confidence 37999999986 58899999999999999888764
No 260
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=51.76 E-value=69 Score=25.55 Aligned_cols=102 Identities=10% Similarity=0.031 Sum_probs=60.7
Q ss_pred CCeEEEcCCCCeeecCcc------CCCEEEEEEEcCCCCCCcHH-HHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcH
Q psy17592 64 GKFELVDCNNKPVKSEDF------LGKWALIYFGFTHCPDICPD-ELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP 136 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~~------~gk~vll~f~~t~C~~~C~~-~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~ 136 (183)
|.--+.|.|+..++.+.+ .|+..==..|..|.-. ... ..|...++.+.+.+. ++.++.||--+ ....
T Consensus 75 p~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~-~~a~~ipGA~e~L~~L~~~----G~~v~iVTnR~-~~~~ 148 (266)
T TIGR01533 75 KYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQA-AQAKPVAGALDFLNYANSK----GVKIFYVSNRS-EKEK 148 (266)
T ss_pred CCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHc-CCCCcCccHHHHHHHHHHC----CCeEEEEeCCC-cchH
Confidence 677788999988776644 2333101146666554 222 247777777777655 67888887653 2345
Q ss_pred HHHHHHHHHhCCCe-----EEecC----CHHHHHHHHhhcCeeE
Q psy17592 137 ELVGKYVKEFSPKF-----IGLTG----TVEQVAAACKAYRVYF 171 (183)
Q Consensus 137 ~~~~~~~~~~~~~~-----~~l~~----~~~~~~~~~~~~gv~~ 171 (183)
+...+.++.+|.+. ..+.. .......+.+.|+|..
T Consensus 149 ~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~Ivl 192 (266)
T TIGR01533 149 AATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEIVL 192 (266)
T ss_pred HHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCEEE
Confidence 66677888888643 22221 2334556777787643
No 261
>COG2911 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.64 E-value=41 Score=32.96 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=36.2
Q ss_pred CCeEEEcCCCCeeecCccCCCEE-EEEEEcCCCCCCcHHHHHHHHHHHH
Q psy17592 64 GKFELVDCNNKPVKSEDFLGKWA-LIYFGFTHCPDICPDELEKMAAVVN 111 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~~~gk~v-ll~f~~t~C~~~C~~~~~~l~~l~~ 111 (183)
+.+.+.+.+.+.+++++-.|.+. +.++-.-|-|..|-...-+...+..
T Consensus 64 ~gll~~~~~~~~~~v~~~~G~~~~~~~~~~~W~~~~l~~~~~~~~~isA 112 (1278)
T COG2911 64 GGLLLGDVRYDRLGVADRAGQLLLALDLRCLWSPSALFRLRLLADRISA 112 (1278)
T ss_pred CCceeccccccceeEEeccCceEEeeccccccCHHHHhhhhhhhhhhhc
Confidence 35667777777788887789875 6779999999878887777766643
No 262
>KOG3170|consensus
Probab=50.84 E-value=29 Score=26.69 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=29.6
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~ 115 (183)
+|-||+|..+.-.-|- |.....+|+++..+|.+
T Consensus 110 ~gvwVvvhLy~~gvp~-c~Ll~~~l~~la~kfp~ 142 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPL-CALLSHHLQSLACKFPQ 142 (240)
T ss_pred CccEEEEEeeccccHH-HHHHHHHHHHHhhcCCc
Confidence 5889999999999986 99999999999998863
No 263
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=50.74 E-value=44 Score=21.20 Aligned_cols=18 Identities=11% Similarity=-0.186 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy17592 19 ITWKSVAVTAVTGGGILF 36 (183)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~ 36 (183)
.+...+++++++++++..
T Consensus 57 ~~~lil~l~~~~Gl~lgi 74 (82)
T PF13807_consen 57 KRALILALGLFLGLILGI 74 (82)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 333334444444443333
No 264
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=50.61 E-value=39 Score=21.31 Aligned_cols=12 Identities=8% Similarity=0.523 Sum_probs=5.0
Q ss_pred chhHHHHHHHHH
Q psy17592 18 PITWKSVAVTAV 29 (183)
Q Consensus 18 ~~~~~~l~~~~~ 29 (183)
...|..+++.++
T Consensus 45 ~~~~~~~ii~ii 56 (72)
T PF12575_consen 45 NFNWIILIISII 56 (72)
T ss_pred cchHHHHHHHHH
Confidence 344444444333
No 265
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=50.55 E-value=50 Score=19.86 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=12.9
Q ss_pred EEEcCCCCCCcHHHHHHHHH
Q psy17592 89 YFGFTHCPDICPDELEKMAA 108 (183)
Q Consensus 89 ~f~~t~C~~~C~~~~~~l~~ 108 (183)
-|...+||. |....-.|.+
T Consensus 3 ly~~~~~p~-~~rv~~~L~~ 21 (71)
T cd03060 3 LYSFRRCPY-AMRARMALLL 21 (71)
T ss_pred EEecCCCcH-HHHHHHHHHH
Confidence 356789998 9876555544
No 266
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=49.76 E-value=65 Score=25.00 Aligned_cols=80 Identities=9% Similarity=0.174 Sum_probs=38.6
Q ss_pred cCCCCCCcHHH---HHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC---cHHHHHHHHHHhCCCeEEecCC-----HHHH
Q psy17592 92 FTHCPDICPDE---LEKMAAVVNKIDGQPNVPNITPIFISVDPERD---TPELVGKYVKEFSPKFIGLTGT-----VEQV 160 (183)
Q Consensus 92 ~t~C~~~C~~~---~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d---~~~~~~~~~~~~~~~~~~l~~~-----~~~~ 160 (183)
++..+..++.. ...|+..++.++++ +..|..+..|.... -.+.+..++++++++-..+..+ ...+
T Consensus 34 ~~~~~~HkqKl~l~~saMRhfa~~L~~~----G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~~l 109 (224)
T PF04244_consen 34 FTYVPHHKQKLVLFFSAMRHFADELRAK----GFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLEQRL 109 (224)
T ss_dssp HHSS---HHHHHHHHHHHHHHHHHHHHT----T--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHHHHH
T ss_pred hCcCcccHHHHHHHHHHHHHHHHHHHhC----CCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHHHHH
Confidence 44555434443 34556667777766 78999998884332 2688999999998664444332 2235
Q ss_pred HHHHhhcCeeEeeCC
Q psy17592 161 AAACKAYRVYFSAGP 175 (183)
Q Consensus 161 ~~~~~~~gv~~~~~~ 175 (183)
..+++++|+..+..+
T Consensus 110 ~~~~~~~~i~~~~~~ 124 (224)
T PF04244_consen 110 ESLAQQLGIPLEVLE 124 (224)
T ss_dssp HH----SSS-EEEE-
T ss_pred HhhhcccCCceEEeC
Confidence 556667888776654
No 267
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=48.12 E-value=57 Score=19.31 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=9.0
Q ss_pred CCCCchhHHHHHHHHHHHHHH
Q psy17592 14 TDKFPITWKSVAVTAVTGGGI 34 (183)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~ 34 (183)
.|+...-|.++++++++..++
T Consensus 24 ER~PFrP~~Ll~~li~Vv~gl 44 (55)
T PF11293_consen 24 ERKPFRPWRLLIVLIVVVIGL 44 (55)
T ss_pred ccCCcchHHHHHHHHHHHHHH
Confidence 344444454444444433333
No 268
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=46.82 E-value=1.4e+02 Score=23.45 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=35.3
Q ss_pred CCEEEEEEEcC-C---CCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC---CCcHHHHHHHHHHhCCC
Q psy17592 83 GKWALIYFGFT-H---CPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE---RDTPELVGKYVKEFSPK 149 (183)
Q Consensus 83 gk~vll~f~~t-~---C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~---~d~~~~~~~~~~~~~~~ 149 (183)
.+.++|.+++. + ..+ .......|..-.+-|+.. .+..+.+|=|.. .+.++.+++|+.++|.+
T Consensus 44 ~~d~ivVLGa~~~~~~g~p-s~~l~~Rl~~A~~LYk~g----k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp 112 (239)
T PRK10834 44 YRQVGVVLGTAKYYRTGVI-NQYYRYRIQGAINAYNSG----KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVD 112 (239)
T ss_pred CCCEEEEcCCcccCCCCCc-CHHHHHHHHHHHHHHHhC----CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCC
Confidence 33345556643 2 223 444445555555555543 456677776632 35678888888888843
No 269
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=46.65 E-value=1.2e+02 Score=22.45 Aligned_cols=51 Identities=10% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhh
Q psy17592 108 AVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKA 166 (183)
Q Consensus 108 ~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 166 (183)
++.+.+++. ++++..|.+.+ ..+.+++.++.-|-.+....+. +.+.++...
T Consensus 127 ~~~~~l~~~----~I~v~~IgiG~---~~~~L~~ia~~tgG~~~~~~~~-~~l~~~~~~ 177 (183)
T cd01453 127 ETIDKLKKE----NIRVSVIGLSA---EMHICKEICKATNGTYKVILDE-THLKELLLE 177 (183)
T ss_pred HHHHHHHHc----CcEEEEEEech---HHHHHHHHHHHhCCeeEeeCCH-HHHHHHHHh
Confidence 344444443 67777777763 4567888888887777665443 455554443
No 270
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=46.62 E-value=73 Score=21.91 Aligned_cols=65 Identities=15% Similarity=0.321 Sum_probs=36.6
Q ss_pred ccCCCEEEEEEEcCCCC-CCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC---cHHHHHHHHHHhCCCe
Q psy17592 80 DFLGKWALIYFGFTHCP-DICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD---TPELVGKYVKEFSPKF 150 (183)
Q Consensus 80 ~~~gk~vll~f~~t~C~-~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d---~~~~~~~~~~~~~~~~ 150 (183)
.|+|++.++. ..-.| +-+..+--.+.+|.++.++. +++=|-+..+|..+ |.-.+.+.++.++..+
T Consensus 20 ~y~G~Y~VL~--G~ispl~gi~p~~l~i~~L~~ri~~~----~i~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kv 88 (112)
T cd01025 20 EYRGLYHVLG--GLISPLDGIGPDDLNIDKLLERIAKG----QVKEVILATNPTVEGEATALYIAKLLKDFGVKV 88 (112)
T ss_pred ccceEEEEeC--CCcCCCCCCCccccCHHHHHHHHhcC----CCcEEEEecCCCchHHHHHHHHHHHHhHcCCCe
Confidence 4788887772 22122 11434456778888877654 57767777776544 3344455555544443
No 271
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=46.32 E-value=32 Score=23.61 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=27.6
Q ss_pred CCeEEEcC-CCCee---ecCccCCCEEEEEEEcCCCCCCcHHHHHHH
Q psy17592 64 GKFELVDC-NNKPV---KSEDFLGKWALIYFGFTHCPDICPDELEKM 106 (183)
Q Consensus 64 p~f~l~d~-~G~~v---~l~~~~gk~vll~f~~t~C~~~C~~~~~~l 106 (183)
|+=+|.++ +++.+ .+.++.|...+|.=-+.=|+. |+-.|...
T Consensus 43 P~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~-CkG~Mr~~ 88 (118)
T PF14427_consen 43 PESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNS-CKGKMRRA 88 (118)
T ss_pred chhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCch-hHHHHHHh
Confidence 44444443 34433 355566999999988999997 99866443
No 272
>PRK13617 psbV cytochrome c-550; Provisional
Probab=46.11 E-value=7.5 Score=28.84 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=34.9
Q ss_pred cCCCCeeecCc--c-CCCEEEEEEEcCCCCCCcH---------HHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHH
Q psy17592 70 DCNNKPVKSED--F-LGKWALIYFGFTHCPDICP---------DELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPE 137 (183)
Q Consensus 70 d~~G~~v~l~~--~-~gk~vll~f~~t~C~~~C~---------~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~ 137 (183)
|.+|++++++. + +||-+ | ...|.. |+ ..-|.|+.|... -|.+|+++
T Consensus 46 ~~~g~~~~~s~~~~~~G~~~---F-~~~C~~-CH~~g~T~~n~~vg~dL~~L~aa-----------------~p~r~nv~ 103 (170)
T PRK13617 46 DPSGSQVTFSESEIKAGRKV---F-NTSCGT-CHAGGITKTNQNVGLDPETLALA-----------------TPARDNVD 103 (170)
T ss_pred CCCCCeEEeCHHHHHHHHHH---H-Hcchhh-hccCCCcCCCCCcCCCHHHHhcc-----------------CCCCCCHH
Confidence 66788777654 4 57655 4 889996 98 333444333211 12357899
Q ss_pred HHHHHHHHh
Q psy17592 138 LVGKYVKEF 146 (183)
Q Consensus 138 ~~~~~~~~~ 146 (183)
.+.+|+++=
T Consensus 104 aLv~yikdP 112 (170)
T PRK13617 104 ALVDYLKDP 112 (170)
T ss_pred HHHHHHhCh
Confidence 999999864
No 273
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=46.05 E-value=1e+02 Score=23.15 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC-cHHHHHHHHHHhCCCeEEec
Q psy17592 86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERD-TPELVGKYVKEFSPKFIGLT 154 (183)
Q Consensus 86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d-~~~~~~~~~~~~~~~~~~l~ 154 (183)
+++..+.+.++- .. .+.++...+..+ +-.+..|+.|..+- ..++++.|++..+.++....
T Consensus 3 vi~lvGptGvGK--TT---t~aKLAa~~~~~----~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 3 VIALVGPTGVGK--TT---TIAKLAARLKLK----GKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEEEEESTTSSH--HH---HHHHHHHHHHHT----T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS
T ss_pred EEEEECCCCCch--Hh---HHHHHHHHHhhc----cccceeecCCCCCccHHHHHHHHHHHhccccchhh
Confidence 556667777773 33 344444444433 45667777887654 57899999999998876654
No 274
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=45.03 E-value=1e+02 Score=21.26 Aligned_cols=59 Identities=27% Similarity=0.369 Sum_probs=43.6
Q ss_pred CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK 149 (183)
Q Consensus 84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~ 149 (183)
...++.|--.--|. -...+..|.+++++..+. +++.||.|.-| +-|-.+.-|-+.++++
T Consensus 21 g~~IvAFaee~dpd-G~eFl~ilk~vA~~nt~n---p~LsiIWIDPD---~FPllv~yWektF~ID 79 (120)
T cd03074 21 GIHIVAFAEEEDPD-GYEFLEILKEVARDNTDN---PDLSIIWIDPD---DFPLLVPYWEKTFGID 79 (120)
T ss_pred CceEEEEeccCCcc-HHHHHHHHHHHHHhcCcC---CCceEEEECCc---cCchhhHHHHhhcCcc
Confidence 34677887777887 889999999999988764 58898888766 4555555555656644
No 275
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=44.91 E-value=1.3e+02 Score=22.57 Aligned_cols=39 Identities=10% Similarity=0.288 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhC
Q psy17592 105 KMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS 147 (183)
Q Consensus 105 ~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~ 147 (183)
.+.+..++++++ ++.+-.|++-...++.+.++.|.+.-+
T Consensus 124 ~i~~~~~~lkk~----~I~v~vI~~G~~~~~~~~l~~~~~~~~ 162 (187)
T cd01452 124 DLVKLAKRLKKN----NVSVDIINFGEIDDNTEKLTAFIDAVN 162 (187)
T ss_pred HHHHHHHHHHHc----CCeEEEEEeCCCCCCHHHHHHHHHHhc
Confidence 355666777655 677777777655678899999999874
No 276
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=44.75 E-value=1.9e+02 Score=25.04 Aligned_cols=61 Identities=8% Similarity=0.006 Sum_probs=42.5
Q ss_pred CCeEEEcCCCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
..+.+.-.+|+.+++.+++|..-+|-.-++- .. |...+...+...+++.+. +|-+|-|..+
T Consensus 277 ~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~-v~~al~~ae~~r~~L~~r----~VlvVPv~~~ 337 (453)
T PLN03098 277 SRLPVRLSTNRIVELVQLRDITRPVILAGTK-ES-VTLAMQKAERYRTELLKR----GVLLIPVVWG 337 (453)
T ss_pred ccceEeccCCCEEeHHHhcCcceEEEEECCH-HH-HHHHHHHhHHHHHHHHHc----CcEEEEEecC
Confidence 4455555568899999999954322232322 44 777788888888888876 7888888876
No 277
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=44.72 E-value=59 Score=19.36 Aligned_cols=19 Identities=5% Similarity=-0.200 Sum_probs=12.7
Q ss_pred EEEcCCCCCCcHHHHHHHHH
Q psy17592 89 YFGFTHCPDICPDELEKMAA 108 (183)
Q Consensus 89 ~f~~t~C~~~C~~~~~~l~~ 108 (183)
-|...+||. |....-.|..
T Consensus 3 ly~~~~~~~-~~~v~~~l~~ 21 (73)
T cd03059 3 LYSGPDDVY-SHRVRIVLAE 21 (73)
T ss_pred EEECCCChh-HHHHHHHHHH
Confidence 355678997 8886555543
No 278
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=44.27 E-value=1.3e+02 Score=25.82 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=42.4
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEec-------C---C---HHHHHHHHhhcCeeEeeCCCC
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLT-------G---T---VEQVAAACKAYRVYFSAGPKD 177 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~-------~---~---~~~~~~~~~~~gv~~~~~~~~ 177 (183)
+++++.|.+|.+.-+++.+.+.++++.+.+.+++ | + ...+-++++++++++-+.+..
T Consensus 200 g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y 269 (459)
T COG1167 200 GARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYY 269 (459)
T ss_pred CCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcc
Confidence 7899999999766789999999998765554432 2 1 335677899999997766544
No 279
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=43.77 E-value=1.4e+02 Score=26.50 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=27.0
Q ss_pred CCEEEEEEEcCCC-CCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHC-PDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C-~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.++|-|+++++.- |+.-......++++.++|+.. .+++.+-.|..+
T Consensus 47 ~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~--s~~i~~~~iDP~ 93 (552)
T TIGR03521 47 DDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAY--NPNIKFRFVNPL 93 (552)
T ss_pred CCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHh--CCCeEEEEeCCC
Confidence 3666666555433 321234456778888888765 456777666433
No 280
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=43.59 E-value=78 Score=23.24 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=3.2
Q ss_pred CEEEEEE
Q psy17592 84 KWALIYF 90 (183)
Q Consensus 84 k~vll~f 90 (183)
+++-+.+
T Consensus 87 ryLkv~i 93 (170)
T PRK05696 87 RLVQIKV 93 (170)
T ss_pred eEEEEEE
Confidence 4544444
No 281
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=43.33 E-value=1.5e+02 Score=22.63 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=33.1
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCC--HHHHHHHHhhcCe
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGT--VEQVAAACKAYRV 169 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~gv 169 (183)
.+..|+|..+ ++++.+.+.+++.++++..|.|+ .+.+..+.+.+++
T Consensus 54 ~i~~VgVf~~---~~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~~~~~ 101 (210)
T PRK01222 54 FVKVVGVFVN---ASDEEIDEIVETVPLDLLQLHGDETPEFCRQLKRRYGL 101 (210)
T ss_pred CCCEEEEEeC---CCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhcCC
Confidence 4778888887 57888889999999898888774 3344445544443
No 282
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=43.23 E-value=32 Score=25.21 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=9.5
Q ss_pred CEEEEEEEcCCCCCCcHHHH
Q psy17592 84 KWALIYFGFTHCPDICPDEL 103 (183)
Q Consensus 84 k~vll~f~~t~C~~~C~~~~ 103 (183)
+++-+-+...--...|..++
T Consensus 79 ~~v~i~i~l~~~n~~~~~el 98 (159)
T COG1580 79 RYVKIAITLEVANKALLEEL 98 (159)
T ss_pred EEEEEEEEEeeCCHHHHHHH
Confidence 45545554444333365554
No 283
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=43.11 E-value=78 Score=23.81 Aligned_cols=26 Identities=8% Similarity=-0.063 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHh
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKI 113 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~ 113 (183)
|=.|+..-||. |-.-...|.++....
T Consensus 3 Id~~~D~vcPw-cylg~~~l~~~~~~~ 28 (209)
T cd03021 3 IELYYDVVSPY-SYLAFEVLCRYQTAW 28 (209)
T ss_pred eEEEEeCCChH-HHHHHHHHHHHHHHh
Confidence 34566788998 999999999988753
No 284
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=42.96 E-value=37 Score=24.08 Aligned_cols=58 Identities=5% Similarity=0.215 Sum_probs=37.0
Q ss_pred ecCcc--CCCEEEEEEE--cCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHH
Q psy17592 77 KSEDF--LGKWALIYFG--FTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKY 142 (183)
Q Consensus 77 ~l~~~--~gk~vll~f~--~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~ 142 (183)
++.++ .+...+|.|- ...+|. +....-.|.++.+++.+. ++.+.-|.+| +.++...+|
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E-~~D~avvleELa~e~~~~----~v~~akVDiD---~~~~LA~~f 87 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPE-VSDNPVMIGELLREFPDY----TWQVAIADLE---QSEAIGDRF 87 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCc-cccHHHHHHHHHHHhcCC----ceEEEEEECC---CCHHHHHHc
Confidence 45555 2334455543 456776 888888889999888532 5889999888 344444333
No 285
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=41.20 E-value=48 Score=24.23 Aligned_cols=27 Identities=19% Similarity=0.189 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHhh
Q psy17592 87 LIYFGFTHCPDICPDELEKMAAVVNKID 114 (183)
Q Consensus 87 ll~f~~t~C~~~C~~~~~~l~~l~~~~~ 114 (183)
|.+|+-..||. |-...+.|.++.+++.
T Consensus 3 i~~~~D~~cp~-c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGW-CYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCch-hhCchHHHHHHHHHhC
Confidence 56788999998 9999999999999883
No 286
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=40.91 E-value=1.7e+02 Score=27.06 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=31.8
Q ss_pred CCCCCcHHHHHHHHHHhCCCeEEecCCHHH-HHHHHhhcCee
Q psy17592 130 DPERDTPELVGKYVKEFSPKFIGLTGTVEQ-VAAACKAYRVY 170 (183)
Q Consensus 130 dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~gv~ 170 (183)
||-++.....-+.+++.|....+++||... ...++++.|+.
T Consensus 441 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~ 482 (755)
T TIGR01647 441 DPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLG 482 (755)
T ss_pred CCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 555666666667788889999999997664 56799999984
No 287
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=40.59 E-value=95 Score=22.27 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEec
Q psy17592 120 PNITPIFISVDPERDTPELVGKYVKEFSPKFIGLT 154 (183)
Q Consensus 120 ~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~ 154 (183)
+.+.+|++|-+|.++ .-.+.+|+.++|+....+.
T Consensus 17 K~IAvVG~S~~P~r~-sy~V~kyL~~~GY~ViPVN 50 (140)
T COG1832 17 KTIAVVGASDKPDRP-SYRVAKYLQQKGYRVIPVN 50 (140)
T ss_pred ceEEEEecCCCCCcc-HHHHHHHHHHCCCEEEeeC
Confidence 379999999998764 4678899999997655443
No 288
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=39.87 E-value=1.8e+02 Score=22.82 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=39.7
Q ss_pred ccCCCEEEEEEEcCC-CCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592 80 DFLGKWALIYFGFTH-CPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF 150 (183)
Q Consensus 80 ~~~gk~vll~f~~t~-C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~ 150 (183)
.+.+ +|-|.++.+. =|..=......+.++.++|+... .+++.+-.|..+ .+++..++.++++|..-
T Consensus 22 ~L~~-pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s-~g~i~v~~iDp~---~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 22 SLDE-PVTITVYFSRELPPELSPLRKQVRDLLDEYARYS-PGKIKVEFIDPD---ENPSEAEEKAKEYGIQP 88 (271)
T ss_pred hCCC-CEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhC-CCceEEEEECCC---CChHHHHHHHHhcCCCc
Confidence 3444 4544444444 33223555677777777777652 226777777654 45788888888888543
No 289
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=39.82 E-value=45 Score=23.27 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=10.1
Q ss_pred chhHHHHHHHHHHHHHHHH
Q psy17592 18 PITWKSVAVTAVTGGGILF 36 (183)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~ 36 (183)
+..+++++++++++++++.
T Consensus 2 W~l~~iii~~i~l~~~~~~ 20 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFY 20 (130)
T ss_pred eeeHHHHHHHHHHHHHHHH
Confidence 4456666666555544443
No 290
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=39.10 E-value=17 Score=18.55 Aligned_cols=9 Identities=33% Similarity=0.807 Sum_probs=5.8
Q ss_pred cCCCCCCcH
Q psy17592 92 FTHCPDICP 100 (183)
Q Consensus 92 ~t~C~~~C~ 100 (183)
.+.||++|-
T Consensus 6 ~srcpp~cc 14 (33)
T PF08094_consen 6 GSRCPPQCC 14 (33)
T ss_dssp TSSSSSSB-
T ss_pred CCCCCchhe
Confidence 467888774
No 291
>PF02941 FeThRed_A: Ferredoxin thioredoxin reductase variable alpha chain; InterPro: IPR004207 Ferredoxin thioredoxin reductase is a [4FE-4S] protein which plays an important role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit a and subunit b. Subunit a is the variable subunit, and b is the catalytic chain. This family is the alpha chain.; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0015979 photosynthesis, 0009536 plastid; PDB: 2PUK_B 2PVO_B 2PVG_B 1DJ7_B 2PVD_B 2PU9_B 2PUO_B.
Probab=38.93 E-value=9.5 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCeee-cCccCCCEE
Q psy17592 64 GKFELVDCNNKPVK-SEDFLGKWA 86 (183)
Q Consensus 64 p~f~l~d~~G~~v~-l~~~~gk~v 86 (183)
+.|.|+..+|+..+ +.+++||++
T Consensus 22 ~~fDl~G~EGev~~~v~~wkGr~i 45 (67)
T PF02941_consen 22 PPFDLKGMEGEVKQIVTDWKGRPI 45 (67)
T ss_dssp S-EE-TT-EEEEEEE-SEETTEE-
T ss_pred CCccccCCEEEEEEEEeecCCcEe
Confidence 78888888888766 677888764
No 292
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=37.69 E-value=1.3e+02 Score=20.31 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=25.6
Q ss_pred CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCC
Q psy17592 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP 148 (183)
Q Consensus 84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~ 148 (183)
+-++|-|-.+.... .+.+..+..+++ ++.+++|+-+ + .+.++..+++.
T Consensus 44 ~dl~I~iS~SG~t~-------e~i~~~~~a~~~----g~~iI~IT~~----~--~l~~~~~~~~~ 91 (119)
T cd05017 44 KTLVIAVSYSGNTE-------ETLSAVEQAKER----GAKIVAITSG----G--KLLEMAREHGV 91 (119)
T ss_pred CCEEEEEECCCCCH-------HHHHHHHHHHHC----CCEEEEEeCC----c--hHHHHHHHcCC
Confidence 44556665554442 233333333333 6888888854 2 26666666653
No 293
>COG2237 Predicted membrane protein [Function unknown]
Probab=37.68 E-value=61 Score=27.07 Aligned_cols=52 Identities=12% Similarity=0.168 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC------cHHHHHHHHHHhCCCeEEecC
Q psy17592 102 ELEKMAAVVNKIDGQPNVPNITPIFISVDPERD------TPELVGKYVKEFSPKFIGLTG 155 (183)
Q Consensus 102 ~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d------~~~~~~~~~~~~~~~~~~l~~ 155 (183)
.+-.=-+++++++++ ++++++..|+=|+.-. -.+++...+++++++...+-.
T Consensus 49 alf~alkiydeLk~~--geDveIA~vsG~~~vgv~sd~~l~~qld~vl~~~~pd~av~Vs 106 (364)
T COG2237 49 ALFAALKIYDELKAK--GEDVEIAVVSGDKDVGVESDLKLSEQLDEVLSELDPDDAVVVS 106 (364)
T ss_pred HHHHHHHHHHHHhcc--CCceEEEEEecCCCcchhhHHHHHHHHHHHHHcCCCcEEEEec
Confidence 344445688999888 6899999999885311 245666777777887655433
No 294
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=37.59 E-value=1.1e+02 Score=20.65 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=6.5
Q ss_pred chhHHHHHHHHHHH
Q psy17592 18 PITWKSVAVTAVTG 31 (183)
Q Consensus 18 ~~~~~~l~~~~~~~ 31 (183)
...|..|+.+++.+
T Consensus 14 g~sW~~LVGVv~~a 27 (102)
T PF15176_consen 14 GRSWPFLVGVVVTA 27 (102)
T ss_pred CcccHhHHHHHHHH
Confidence 44555554444333
No 295
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=37.28 E-value=80 Score=17.88 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=12.6
Q ss_pred EEcCCCCCCcHHHHHHHHHH
Q psy17592 90 FGFTHCPDICPDELEKMAAV 109 (183)
Q Consensus 90 f~~t~C~~~C~~~~~~l~~l 109 (183)
|...+||. |....-.|...
T Consensus 4 y~~~~~~~-~~~~~~~l~~~ 22 (71)
T cd00570 4 YYFPGSPR-SLRVRLALEEK 22 (71)
T ss_pred EeCCCCcc-HHHHHHHHHHc
Confidence 45678997 98755555544
No 296
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=36.87 E-value=1.4e+02 Score=20.39 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC-------CCCcHHHHHHHHHHhC
Q psy17592 94 HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP-------ERDTPELVGKYVKEFS 147 (183)
Q Consensus 94 ~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp-------~~d~~~~~~~~~~~~~ 147 (183)
.|+. =...+..++..++++ ++++++|+.|. ...+.+++.+++.++-
T Consensus 25 ~~~~-~~~~~a~lr~W~er~-------ga~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y 77 (111)
T PF14062_consen 25 YCPD-TADIIAVLRYWEERY-------GAEIVGIGFDTLELSVARPPQTPEEAEALAAEHY 77 (111)
T ss_pred CCCC-HHHHHHHHHHHHHHh-------CEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3675 566677777777776 68888888772 1235688888888873
No 297
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=36.71 E-value=1.5e+02 Score=21.03 Aligned_cols=51 Identities=25% Similarity=0.481 Sum_probs=36.2
Q ss_pred CCeeEEEEEeCCCC-----CcHHHHHHHHHHhC-CCeEEecCCHHHHHHHHhhcCee
Q psy17592 120 PNITPIFISVDPER-----DTPELVGKYVKEFS-PKFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 120 ~~v~~v~Is~dp~~-----d~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
.+..++.+.-||.+ |.+-.+.+.+++++ ..+.+..-+.+...+++..|||.
T Consensus 34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~ 90 (132)
T PRK11509 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVF 90 (132)
T ss_pred CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCc
Confidence 36789999999865 45567778888886 33555444444556799999976
No 298
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=36.63 E-value=1.3e+02 Score=23.36 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEE
Q psy17592 104 EKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIG 152 (183)
Q Consensus 104 ~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~ 152 (183)
|.+.++++++-++ .+++.+++++ ++.+..+..++++.++...
T Consensus 10 ~mVaeih~~yv~~--~~gF~~vg~A-----~~~~ea~~~i~~~~pDLIL 51 (224)
T COG4565 10 PMVAEIHRRYVKQ--IPGFSVVGTA-----GTLEEAKMIIEEFKPDLIL 51 (224)
T ss_pred hHHHHHHHHHHHh--CCCceEEEee-----ccHHHHHHHHHhhCCCEEE
Confidence 5567777776655 5688888886 4677888888877766544
No 299
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=36.47 E-value=95 Score=21.79 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 100 PDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 100 ~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
..-+..+.++.+++.-+ .++++++.||..
T Consensus 77 ~rR~~~lke~l~elgie--~eRv~~~wiSa~ 105 (132)
T COG1908 77 KRRMELLKELLKELGIE--PERVRVLWISAA 105 (132)
T ss_pred HHHHHHHHHHHHHhCCC--cceEEEEEEehh
Confidence 34566777777777655 579999999976
No 300
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=36.42 E-value=93 Score=19.07 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=13.7
Q ss_pred EEEcCCCCCCcHHHHHHHHHH
Q psy17592 89 YFGFTHCPDICPDELEKMAAV 109 (183)
Q Consensus 89 ~f~~t~C~~~C~~~~~~l~~l 109 (183)
-+..++||. |....-.|.+.
T Consensus 4 Ly~~~~sp~-~~kv~~~L~~~ 23 (77)
T cd03041 4 LYEFEGSPF-CRLVREVLTEL 23 (77)
T ss_pred EecCCCCch-HHHHHHHHHHc
Confidence 345679998 99866655554
No 301
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=35.70 E-value=1.5e+02 Score=24.77 Aligned_cols=48 Identities=10% Similarity=0.216 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCCCCCCCeeEEEEEeCCCCC------cHHHHHHHHHHhCCCeEEe
Q psy17592 104 EKMAAVVNKIDGQPNVPNITPIFISVDPERD------TPELVGKYVKEFSPKFIGL 153 (183)
Q Consensus 104 ~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d------~~~~~~~~~~~~~~~~~~l 153 (183)
-.=-+++++++++ ++++++..|+=+++.. =.+++++-+++++++...+
T Consensus 51 f~avkiydeL~~~--GedveVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~~~i~ 104 (344)
T PF04123_consen 51 FGAVKIYDELKAE--GEDVEVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPDSAIV 104 (344)
T ss_pred HHHHHHHHHHHhc--CCCeEEEEEECCCCCchhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 3334677888877 6689999998776432 1356667777777765444
No 302
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=34.58 E-value=58 Score=23.89 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=2.3
Q ss_pred hhHHHH
Q psy17592 19 ITWKSV 24 (183)
Q Consensus 19 ~~~~~l 24 (183)
..|+++
T Consensus 17 ~~~I~l 22 (159)
T COG1580 17 SLWILL 22 (159)
T ss_pred eeehHH
Confidence 334333
No 303
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=34.57 E-value=90 Score=25.02 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=29.0
Q ss_pred CCCeEEEcCCCCeeecCccC--CCEEEEEEEcCCCCCCcHHHH-HHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 63 GGKFELVDCNNKPVKSEDFL--GKWALIYFGFTHCPDICPDEL-EKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 63 ~p~f~l~d~~G~~v~l~~~~--gk~vll~f~~t~C~~~C~~~~-~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.|-|+++|.+|+++-.+.-. ++.+.+.|. |+.+. ..|.++...-.+. ..+++|+.|++|
T Consensus 75 VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~--~~~~kV~pvsL~ 136 (274)
T PF04278_consen 75 VPVFTITNSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPEL--ASGAKVVPVSLG 136 (274)
T ss_dssp SEEEEEE-TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHH--HTT-EEEEEEHH
T ss_pred ceEEEEECCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccc--cCceEEEEecHH
Confidence 48999999999988765554 566655552 33333 3355554432211 237999999987
No 304
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=34.17 E-value=27 Score=28.61 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCeEEEcCCCCeeecCccC-CCEEEEEEEcCC
Q psy17592 64 GKFELVDCNNKPVKSEDFL-GKWALIYFGFTH 94 (183)
Q Consensus 64 p~f~l~d~~G~~v~l~~~~-gk~vll~f~~t~ 94 (183)
|-.-++|.+|+++..+++. |.++.+.|-+.-
T Consensus 101 pk~La~D~~GnPIKASdL~vnSp~~~lfeyPl 132 (321)
T TIGR03171 101 PKSLLVDSSGNPIKASSIPVNSPIITIFEYPM 132 (321)
T ss_pred CceEEecCCCCeeeHHHccCCCcccccccCcC
Confidence 5567889999999999984 667766665543
No 305
>PRK06756 flavodoxin; Provisional
Probab=33.37 E-value=1.1e+02 Score=21.45 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=8.9
Q ss_pred cHHHHHHHHHHhCC
Q psy17592 135 TPELVGKYVKEFSP 148 (183)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (183)
....+.+.+++.|.
T Consensus 102 a~~~l~~~l~~~g~ 115 (148)
T PRK06756 102 AVDILIEKLQERGA 115 (148)
T ss_pred HHHHHHHHHHHCCC
Confidence 45666677776663
No 306
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=32.84 E-value=2.1e+02 Score=21.95 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=36.0
Q ss_pred eeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecC--CHHHHHHHHhhcCee
Q psy17592 122 ITPIFISVDPERDTPELVGKYVKEFSPKFIGLTG--TVEQVAAACKAYRVY 170 (183)
Q Consensus 122 v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~gv~ 170 (183)
+.+|+|..+ .+.+.+.+.+++.+++...+.| +.+.+.++...+++.
T Consensus 53 ~~~VgVf~n---~~~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~~~~ 100 (208)
T COG0135 53 VKVVGVFVN---ESIEEILEIAEELGLDAVQLHGDEDPEYIDQLKEELGVP 100 (208)
T ss_pred CCEEEEECC---CCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhcCCc
Confidence 678999988 5889999999999999999988 455566666655443
No 307
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=32.56 E-value=91 Score=26.18 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=3.5
Q ss_pred CCCEEEEEE
Q psy17592 82 LGKWALIYF 90 (183)
Q Consensus 82 ~gk~vll~f 90 (183)
+|.+ |+.+
T Consensus 85 kGqv-L~~L 92 (390)
T PRK15136 85 EGDV-LVTL 92 (390)
T ss_pred CCCE-EEEE
Confidence 4553 3444
No 308
>COG4093 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.56 E-value=1.9e+02 Score=23.75 Aligned_cols=10 Identities=0% Similarity=-0.050 Sum_probs=4.1
Q ss_pred CCeeecCccC
Q psy17592 73 NKPVKSEDFL 82 (183)
Q Consensus 73 G~~v~l~~~~ 82 (183)
|-..+..+|+
T Consensus 88 G~aas~g~l~ 97 (338)
T COG4093 88 GWAASAGQLR 97 (338)
T ss_pred chhhcccccc
Confidence 4334444443
No 309
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=32.31 E-value=69 Score=22.82 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=7.6
Q ss_pred eeecCccCCCEEEEEE
Q psy17592 75 PVKSEDFLGKWALIYF 90 (183)
Q Consensus 75 ~v~l~~~~gk~vll~f 90 (183)
++++.+ |+++=+.|
T Consensus 56 ~vNL~~--~~ylk~~i 69 (142)
T PRK07718 56 TTNLKS--GNFIRIQF 69 (142)
T ss_pred EEEcCC--CCEEEEEE
Confidence 445555 56655554
No 310
>cd03361 TOPRIM_TopoIA_RevGyr TopoIA_RevGyr : The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to the ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=32.23 E-value=2e+02 Score=21.05 Aligned_cols=15 Identities=20% Similarity=0.669 Sum_probs=11.4
Q ss_pred CeeEEEEEeCCCCCc
Q psy17592 121 NITPIFISVDPERDT 135 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~ 135 (183)
++.-|.+..|++++.
T Consensus 118 ~~~~iiiatD~drEG 132 (170)
T cd03361 118 EVDEVLIATDPDTEG 132 (170)
T ss_pred hCCEEEEecCCCccH
Confidence 566788888987764
No 311
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=31.97 E-value=65 Score=20.92 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=6.6
Q ss_pred cCccCCCE-EEEE
Q psy17592 78 SEDFLGKW-ALIY 89 (183)
Q Consensus 78 l~~~~gk~-vll~ 89 (183)
..++.|.+ |||.
T Consensus 62 ~EdysgdYDVLIt 74 (100)
T PF05984_consen 62 NEDYSGDYDVLIT 74 (100)
T ss_pred cccccccccEEEe
Confidence 44567765 5553
No 312
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=31.85 E-value=68 Score=23.64 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=21.3
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHhhCC
Q psy17592 89 YFGFTHCPDICPDELEKMAAVVNKIDGQ 116 (183)
Q Consensus 89 ~f~~t~C~~~C~~~~~~l~~l~~~~~~~ 116 (183)
.|.-+.|+. |-..-|.+.++..++..+
T Consensus 2 ~F~dPlc~~-C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSW-CWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HH-HHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChH-HHHhHHHHHHHHHHcCCc
Confidence 578899997 999999999999998754
No 313
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=31.66 E-value=2.3e+02 Score=26.83 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=29.2
Q ss_pred CCCCcHHHHHHHHHHhCCCeEEecCCHHH-HHHHHhhcCee
Q psy17592 131 PERDTPELVGKYVKEFSPKFIGLTGTVEQ-VAAACKAYRVY 170 (183)
Q Consensus 131 p~~d~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~gv~ 170 (183)
|-+++....-+.+++.|....+++||... ...++++.|+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 33444555556777889999999997665 45689999983
No 314
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.43 E-value=1.9e+02 Score=20.41 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=31.9
Q ss_pred cCCCEEEEEEEcCCCCCCc--HHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 81 FLGKWALIYFGFTHCPDIC--PDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C--~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
.+.++|+|.+....|-... ......+.++.+.+.+. .++..++.++.=|
T Consensus 47 ~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~--~~~~~vi~~~~~p 97 (169)
T cd01828 47 LQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKH--FPNIKIVVQSILP 97 (169)
T ss_pred cCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHH--CCCCeEEEEecCC
Confidence 3567889989887775322 34456777777776653 2467888887643
No 315
>PHA02650 hypothetical protein; Provisional
Probab=31.00 E-value=1.5e+02 Score=19.06 Aligned_cols=9 Identities=0% Similarity=-0.208 Sum_probs=3.5
Q ss_pred chhHHHHHH
Q psy17592 18 PITWKSVAV 26 (183)
Q Consensus 18 ~~~~~~l~~ 26 (183)
...|..+++
T Consensus 46 ~~~~~~~ii 54 (81)
T PHA02650 46 WFNGQNFIF 54 (81)
T ss_pred CchHHHHHH
Confidence 334433333
No 316
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=30.72 E-value=1.5e+02 Score=19.12 Aligned_cols=42 Identities=7% Similarity=-0.016 Sum_probs=31.7
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.+.++++| +.++.+...-+..|.+++++++++ +.+++.++..
T Consensus 39 ~~~vilDl--s~v~~iDssgl~~L~~l~~~~~~~----g~~l~l~~~~ 80 (100)
T cd06844 39 GKTIVIDI--SALEFMDSSGTGVLLERSRLAEAV----GGQFVLTGIS 80 (100)
T ss_pred CCEEEEEC--CCCcEEcHHHHHHHHHHHHHHHHc----CCEEEEECCC
Confidence 36788887 577776777788888888888866 6777777665
No 317
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=30.67 E-value=53 Score=27.97 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcC
Q psy17592 134 DTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYR 168 (183)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 168 (183)
|..+.+.+-+++.|.+..++..+.++-.++.++||
T Consensus 365 d~vd~l~e~a~~~Ga~ve~is~~~~eg~q~~~afg 399 (411)
T COG1503 365 DLVDELAELAEESGAKVEIISDDTDEGAQLLKAFG 399 (411)
T ss_pred hHHHHHHHHHHhcCCeEEEecCchHHHHHHHHccc
Confidence 56677777777777777777777777677777776
No 318
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.31 E-value=1.8e+02 Score=22.65 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592 86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV 129 (183)
Q Consensus 86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~ 129 (183)
.|-.|.-.-||. |-.--+.|.++...+.... ++++.+-.+
T Consensus 7 ~I~v~sD~vCPw-C~ig~~rL~ka~~~~~~~~---~v~i~w~pf 46 (225)
T COG2761 7 EIDVFSDVVCPW-CYIGKRRLEKALAEYPQEV---RVEIRWRPF 46 (225)
T ss_pred EEEEEeCCcCch-hhcCHHHHHHHHHhcCcce---eEEEEeccc
Confidence 344456788997 9999999999999887541 566655543
No 319
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=30.11 E-value=1.9e+02 Score=23.39 Aligned_cols=52 Identities=27% Similarity=0.423 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHH
Q psy17592 100 PDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQ 159 (183)
Q Consensus 100 ~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (183)
...|..=.++|+++ ++.++++.+. +.+.|+.+.+.++++.|+...++|-+.-
T Consensus 114 ~~YL~~Cl~~Ykql-------~i~a~G~~~~-E~eqp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 114 PEYLRKCLKLYKKI-------GVPVVGIHCK-EKEMPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred HHHHHHHHHHHHHh-------CCceEEEEec-chhchHHHHHHHHHhCCCEEEEeCchhh
Confidence 44455555566665 6889999886 3578999999999999999999996543
No 320
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=29.80 E-value=48 Score=21.65 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=39.1
Q ss_pred eEEEcCCCCeee-cCccCCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHH
Q psy17592 66 FELVDCNNKPVK-SEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVK 144 (183)
Q Consensus 66 f~l~d~~G~~v~-l~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~ 144 (183)
++++..-|.-.. +..+.+++-|-.|-|..... ...-.+++|.+++. +..+.+.+.++
T Consensus 15 v~~PE~pGal~~F~~~l~~~~nITeF~YR~~~~---------------------~~a~vlvgi~v~~~-~~~~~l~~~L~ 72 (91)
T PF00585_consen 15 VEFPERPGALKRFLDALGPRNNITEFHYRYSGD---------------------DFARVLVGIEVPDA-EDLEELIERLK 72 (91)
T ss_dssp EE--BSTTHCHHHHHCCSSSE-EEEEEEE-TTT---------------------SCSEEEEEEE-SST-HHHHHHHHHHT
T ss_pred EECCCCccHHHHHHHHhCCCceEEEEEEcCCCC---------------------CeeeEEEEEEeCCH-HHHHHHHHHHH
Confidence 444455554443 23345666566676655443 22567888888742 23577888888
Q ss_pred HhCCCeEEecCCH
Q psy17592 145 EFSPKFIGLTGTV 157 (183)
Q Consensus 145 ~~~~~~~~l~~~~ 157 (183)
+.|.++..++++.
T Consensus 73 ~~gy~~~dls~ne 85 (91)
T PF00585_consen 73 ALGYPYEDLSDNE 85 (91)
T ss_dssp SSS-EEECTTT-H
T ss_pred HcCCCeEECCCCH
Confidence 8888888887763
No 321
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=29.71 E-value=44 Score=22.36 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=22.7
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEE
Q psy17592 90 FGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFIS 128 (183)
Q Consensus 90 f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is 128 (183)
|+-.+||- |..+...+.+.-. .+.++++.+.
T Consensus 2 ~YDg~C~l-C~~~~~~l~~~d~-------~~~l~~~~~~ 32 (114)
T PF04134_consen 2 FYDGDCPL-CRREVRFLRRRDR-------GGRLRFVDIQ 32 (114)
T ss_pred EECCCCHh-HHHHHHHHHhcCC-------CCCEEEEECC
Confidence 56789995 9999888887711 2368888773
No 322
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=29.64 E-value=2.1e+02 Score=21.20 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=3.9
Q ss_pred cCCCCC
Q psy17592 92 FTHCPD 97 (183)
Q Consensus 92 ~t~C~~ 97 (183)
..-|++
T Consensus 104 ~~~CtH 109 (178)
T PRK13474 104 NAVCTH 109 (178)
T ss_pred cCCCCC
Confidence 467775
No 323
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=29.49 E-value=85 Score=19.03 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=13.6
Q ss_pred EEEcCCCCCCcHHHHHHHHHH
Q psy17592 89 YFGFTHCPDICPDELEKMAAV 109 (183)
Q Consensus 89 ~f~~t~C~~~C~~~~~~l~~l 109 (183)
-|.+..||. |+...-.|...
T Consensus 4 Ly~~~~~p~-c~kv~~~L~~~ 23 (77)
T cd03040 4 LYQYKTCPF-CCKVRAFLDYH 23 (77)
T ss_pred EEEcCCCHH-HHHHHHHHHHC
Confidence 355678998 98876555543
No 324
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=29.12 E-value=77 Score=16.23 Aligned_cols=15 Identities=13% Similarity=0.025 Sum_probs=3.2
Q ss_pred CCCCchhHHHHHHHH
Q psy17592 14 TDKFPITWKSVAVTA 28 (183)
Q Consensus 14 ~~~~~~~~~~l~~~~ 28 (183)
++++-+...-+.+++
T Consensus 11 ~~~~GFTLiEllVa~ 25 (31)
T PF13544_consen 11 RRQRGFTLIELLVAM 25 (31)
T ss_dssp -------HHHHHHHH
T ss_pred cccCCccHHHHHHHH
Confidence 333444444343333
No 325
>PF15050 SCIMP: SCIMP protein
Probab=29.09 E-value=86 Score=21.91 Aligned_cols=16 Identities=19% Similarity=0.042 Sum_probs=9.0
Q ss_pred CCCchhHHHHHHHHHH
Q psy17592 15 DKFPITWKSVAVTAVT 30 (183)
Q Consensus 15 ~~~~~~~~~l~~~~~~ 30 (183)
..+.-.|++|++++++
T Consensus 3 WWr~nFWiiLAVaII~ 18 (133)
T PF15050_consen 3 WWRDNFWIILAVAIIL 18 (133)
T ss_pred hHHhchHHHHHHHHHH
Confidence 3445567766665544
No 326
>KOG2027|consensus
Probab=29.04 E-value=9.2 Score=32.24 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=11.4
Q ss_pred HHHHHHhhcCeeEeeCCC
Q psy17592 159 QVAAACKAYRVYFSAGPK 176 (183)
Q Consensus 159 ~~~~~~~~~gv~~~~~~~ 176 (183)
-+.++++.|++.|+..+.
T Consensus 149 ~lkEIA~ey~v~~~~~~~ 166 (388)
T KOG2027|consen 149 YLKEIAKEYNVNWEPDSL 166 (388)
T ss_pred HHHHHHHHhCCCcccCcc
Confidence 345677777777766543
No 327
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=28.83 E-value=1.7e+02 Score=18.99 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=36.8
Q ss_pred HHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCee
Q psy17592 106 MAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170 (183)
Q Consensus 106 l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~ 170 (183)
+.+..+.++. +.+..+.|.-|-+..-.+.+...+++++.++.++.. ..+ |.++.|+.
T Consensus 18 ~kqt~Kai~k----g~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s-~~~---LGkAcgi~ 74 (84)
T PRK13600 18 LKETLKALKK----DQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS-KHA---LGKHVGIN 74 (84)
T ss_pred HHHHHHHHhc----CCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC-HHH---HHHHhCCC
Confidence 3444555543 267788888775444556777888888888887633 333 66766654
No 328
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=28.81 E-value=1.2e+02 Score=18.61 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=12.0
Q ss_pred cCCCeEEEcCCCCeee
Q psy17592 62 IGGKFELVDCNNKPVK 77 (183)
Q Consensus 62 ~~p~f~l~d~~G~~v~ 77 (183)
..+.-++-|.+|+.++
T Consensus 43 ~t~HPELLD~~G~~i~ 58 (65)
T PF11189_consen 43 VTIHPELLDENGNIIN 58 (65)
T ss_pred CCCCcccCCCCcCCcC
Confidence 3467788999998665
No 329
>KOG0202|consensus
Probab=28.65 E-value=1.4e+02 Score=28.17 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=37.1
Q ss_pred CeeEEEE--EeCCCCCcHHHHHHHHHHhCCCeEEecCCHHH-HHHHHhhcCeeEeeCC
Q psy17592 121 NITPIFI--SVDPERDTPELVGKYVKEFSPKFIGLTGTVEQ-VAAACKAYRVYFSAGP 175 (183)
Q Consensus 121 ~v~~v~I--s~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~gv~~~~~~ 175 (183)
++.|+++ -.||.|......-+.+.+-|.+..+++||... -.++++..|++-...|
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed 629 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDED 629 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCcc
Confidence 4445554 24665555555556677778999999997655 4568999997755544
No 330
>PRK01844 hypothetical protein; Provisional
Probab=28.44 E-value=1.4e+02 Score=18.89 Aligned_cols=10 Identities=30% Similarity=0.112 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy17592 21 WKSVAVTAVT 30 (183)
Q Consensus 21 ~~~l~~~~~~ 30 (183)
|.++++++++
T Consensus 6 ~I~l~I~~li 15 (72)
T PRK01844 6 GILVGVVALV 15 (72)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 331
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=28.43 E-value=1.2e+02 Score=25.27 Aligned_cols=9 Identities=22% Similarity=0.254 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy17592 102 ELEKMAAVV 110 (183)
Q Consensus 102 ~~~~l~~l~ 110 (183)
|..+|.++.
T Consensus 131 EaeyLlrlA 139 (372)
T PF04375_consen 131 EAEYLLRLA 139 (372)
T ss_pred HHHHHHHHH
Confidence 344444443
No 332
>KOG3703|consensus
Probab=28.10 E-value=2.5e+02 Score=25.28 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHhCCCeEEecC
Q psy17592 135 TPELVGKYVKEFSPKFIGLTG 155 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~ 155 (183)
+.|.+.+|+.+++........
T Consensus 146 nReLLdkYCveY~VgiigF~~ 166 (873)
T KOG3703|consen 146 NRELLDKYCVEYGVGIIGFFS 166 (873)
T ss_pred HHHHHHHHHHHhCCceEEEec
Confidence 678889999999877655433
No 333
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=27.73 E-value=1.5e+02 Score=22.63 Aligned_cols=50 Identities=20% Similarity=0.482 Sum_probs=34.0
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC-----CCc------HHHHHHHHHHhC
Q psy17592 90 FGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE-----RDT------PELVGKYVKEFS 147 (183)
Q Consensus 90 f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~-----~d~------~~~~~~~~~~~~ 147 (183)
|..-.|.. |+..-..|.++.++ ++|-.++..+|.. +|+ .+.-+.|.+..+
T Consensus 5 FTSQGCsS-CPpAD~~L~~l~~~-------~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~ 65 (202)
T PF06764_consen 5 FTSQGCSS-CPPADRLLSELAAR-------PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFG 65 (202)
T ss_dssp EE-TT-TT--HHHHHHHHHHHHH-------TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT
T ss_pred ecCCCCCC-CcHHHHHHHHhhcC-------CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhC
Confidence 77889997 99999999999987 1688888888853 232 345667887776
No 334
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.48 E-value=66 Score=23.77 Aligned_cols=44 Identities=11% Similarity=0.324 Sum_probs=30.0
Q ss_pred cCCCEEEEEEEcCCCCCCcHHHHHHHH---HHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 81 FLGKWALIYFGFTHCPDICPDELEKMA---AVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 81 ~~gk~vll~f~~t~C~~~C~~~~~~l~---~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
-.||+.++.|-...|+. |...-..+. ++++-+.+ ++.++.+...
T Consensus 40 ~~~Kylllmfes~~C~y-C~~~KKd~~~~krlrEylk~-----hf~~~~l~i~ 86 (182)
T COG2143 40 PNDKYLLLMFESNGCSY-CERFKKDLKNVKRLREYLKE-----HFSAYYLNIS 86 (182)
T ss_pred ccCcEEEEEEcCCCChH-HHHHHHhhcchHHHHHHHhh-----CeEEEEEEec
Confidence 46899999999999998 987655443 34444432 4666666554
No 335
>KOG1400|consensus
Probab=27.39 E-value=41 Score=27.87 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=26.8
Q ss_pred CccCCCEEEEEEEcCCCCCCcHHHHHHHHHHH
Q psy17592 79 EDFLGKWALIYFGFTHCPDICPDELEKMAAVV 110 (183)
Q Consensus 79 ~~~~gk~vll~f~~t~C~~~C~~~~~~l~~l~ 110 (183)
+.+-|||.++.||..||-++|...+.+|-...
T Consensus 270 ds~~~kpivlSf~~a~kihv~e~~~~hL~~~g 301 (371)
T KOG1400|consen 270 DSAPGKPIVLSFKYAWKIHVCERCREHLLWEG 301 (371)
T ss_pred cccCCCceEeehhhhhhhhhhHHHHHHHHhhc
Confidence 44678999999999999999988877777664
No 336
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.80 E-value=80 Score=22.98 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy17592 29 VTGGGILFYMWNL 41 (183)
Q Consensus 29 ~~~~~~~~~~~~~ 41 (183)
+++++..+++++.
T Consensus 28 l~~~g~gg~~~~~ 40 (162)
T PRK07021 28 LAAAAGAGYSWWL 40 (162)
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 337
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=26.79 E-value=71 Score=17.34 Aligned_cols=13 Identities=23% Similarity=0.802 Sum_probs=9.3
Q ss_pred EcCCCCCCcHHHHH
Q psy17592 91 GFTHCPDICPDELE 104 (183)
Q Consensus 91 ~~t~C~~~C~~~~~ 104 (183)
|+..|+. |..++.
T Consensus 22 y~fCC~t-C~~~fk 34 (37)
T PF08394_consen 22 YYFCCPT-CLSQFK 34 (37)
T ss_pred EEEECHH-HHHHHH
Confidence 5667886 988753
No 338
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=26.75 E-value=4.7e+02 Score=23.51 Aligned_cols=44 Identities=9% Similarity=-0.120 Sum_probs=34.4
Q ss_pred CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
..++|-|+||.-=. -+..+|.|-+|+..-.- .+++.||++.-.+
T Consensus 88 ~~~iVIFGATGDLA-~RKL~PALy~L~~~g~L---p~~~~IIG~aR~~ 131 (573)
T PLN02640 88 TLSITVVGASGDLA-KKKIFPALFALFYEDWL---PENFTVFGYARTK 131 (573)
T ss_pred CeEEEEeCCccHhh-hhhHHHHHHHHHHcCCC---CCCCEEEEEECCC
Confidence 35789999999886 89999999999864221 2479999998764
No 339
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=26.42 E-value=3.4e+02 Score=21.79 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeEeeCCCC
Q psy17592 138 LVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~ 177 (183)
.+.+|..+.|.+...+.++-....+..+..+....+.+..
T Consensus 151 aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~~ge~P~~ 190 (274)
T cd01132 151 AMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 190 (274)
T ss_pred HHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHhcCCCCCC
Confidence 4567777778888888887666655666666665566544
No 340
>PRK09190 hypothetical protein; Provisional
Probab=26.24 E-value=2.5e+02 Score=21.75 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=21.9
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHH------hCCCeEEe
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKE------FSPKFIGL 153 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~------~~~~~~~l 153 (183)
.+.+|.++.|...++.+.+.+..+. ++.++...
T Consensus 127 k~~Lvi~A~DaS~~t~kKl~~~~~~~~~~~~~~Vp~v~~ 165 (220)
T PRK09190 127 EAAALIHASDGAADGKRKLDQARRALVHETGREIPVIGL 165 (220)
T ss_pred CceEEEEeccCChhHHHHHHHHHHhhcccccCCccEEEe
Confidence 5677777777766777777776666 55555443
No 341
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=26.20 E-value=65 Score=22.74 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=15.3
Q ss_pred cCCCCeeecCccCCCEEEEE
Q psy17592 70 DCNNKPVKSEDFLGKWALIY 89 (183)
Q Consensus 70 d~~G~~v~l~~~~gk~vll~ 89 (183)
..+....++.+++||++|+.
T Consensus 125 ~~~~~~ptl~elrgKIvl~~ 144 (146)
T PF00388_consen 125 YQENNLPTLGELRGKIVLLR 144 (146)
T ss_dssp STTSSS-BTTTTTTSEEEEE
T ss_pred ccCCCCCChHHhcCcEEEEE
Confidence 45566778999999999875
No 342
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=26.18 E-value=2.1e+02 Score=19.22 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=32.9
Q ss_pred HHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcC
Q psy17592 105 KMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYR 168 (183)
Q Consensus 105 ~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 168 (183)
.++++.+.+..- ...++.+. + ..+.+.+.+.+++++.....-+-+.++..++.+.|+
T Consensus 44 ~~~ev~~~L~~G----ssAl~~lv-~--~~~~d~v~~~l~~~gg~v~~t~ls~~~e~~L~~al~ 100 (102)
T PF06897_consen 44 FIKEVGEALKPG----SSALFLLV-D--EATEDKVDAALRKFGGKVLRTSLSEEDEDELQEALD 100 (102)
T ss_pred HHHHHHhhcCCC----ceEEEEEe-c--cCCHHHHHHHHHhcCCEEEeccCCHHHHHHHHHHHh
Confidence 366666666532 33333333 3 257788888888887665554445555555655553
No 343
>PHA01748 hypothetical protein
Probab=26.09 E-value=1.5e+02 Score=17.80 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592 122 ITPIFISVDPERDTPELVGKYVKEFSPK 149 (183)
Q Consensus 122 v~~v~Is~dp~~d~~~~~~~~~~~~~~~ 149 (183)
++.++|.+++ +..+.+..+++++|.+
T Consensus 2 m~~iSvrLp~--el~~eld~~a~~~g~~ 27 (60)
T PHA01748 2 MKVITFKIEE--DLLELLDRYAIKHGLN 27 (60)
T ss_pred ceEEEEECCH--HHHHHHHHHHHHhCCC
Confidence 4678888883 6788999999998865
No 344
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.00 E-value=83 Score=22.89 Aligned_cols=6 Identities=33% Similarity=0.789 Sum_probs=2.5
Q ss_pred CCeEEE
Q psy17592 64 GKFELV 69 (183)
Q Consensus 64 p~f~l~ 69 (183)
..|.+.
T Consensus 55 d~~~~y 60 (161)
T COG5353 55 DQFDLY 60 (161)
T ss_pred ceeEEe
Confidence 344443
No 345
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=25.99 E-value=1.9e+02 Score=23.46 Aligned_cols=51 Identities=25% Similarity=0.456 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHH
Q psy17592 100 PDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVE 158 (183)
Q Consensus 100 ~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~ 158 (183)
...|..=.++|+++ ++...++.+. +.+.|+.+.+.++++.|+...++|-+.
T Consensus 115 ~~YL~~Cl~~Ykql-------~i~a~G~~~~-E~eqp~~i~~Ll~~~~PDIlViTGHD~ 165 (287)
T PF05582_consen 115 EEYLNKCLKVYKQL-------GIPAVGIHVP-EKEQPEKIYRLLEEYRPDILVITGHDG 165 (287)
T ss_pred HHHHHHHHHHHHHc-------CCceEEEEec-hHHhhHHHHHHHHHcCCCEEEEeCchh
Confidence 44444445566655 7889999886 357899999999999999999999655
No 346
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=25.75 E-value=1.9e+02 Score=25.70 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=3.0
Q ss_pred EEeCCC
Q psy17592 127 ISVDPE 132 (183)
Q Consensus 127 Is~dp~ 132 (183)
|.++|.
T Consensus 132 I~lqPG 137 (553)
T COG3008 132 IGLQPG 137 (553)
T ss_pred EEecCC
Confidence 445554
No 347
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=25.74 E-value=54 Score=24.74 Aligned_cols=7 Identities=29% Similarity=0.244 Sum_probs=4.3
Q ss_pred CEEEEEE
Q psy17592 84 KWALIYF 90 (183)
Q Consensus 84 k~vll~f 90 (183)
+|++..|
T Consensus 81 ~P~l~~y 87 (192)
T PRK10893 81 QPVLTTF 87 (192)
T ss_pred CCeEEEE
Confidence 5666666
No 348
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=25.72 E-value=3.4e+02 Score=21.47 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=23.0
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHh
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKI 113 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~ 113 (183)
+|+-+=++|-+.|.. |...+-.|.+..-.+
T Consensus 2 ~~ikva~~~L~gC~G-C~~slldl~E~L~dl 31 (247)
T COG1941 2 EKIKVATVWLTGCSG-CHMSLLDLYEKLLDL 31 (247)
T ss_pred cceEEEEEEeccccc-hHHHHHhHHHHHHHh
Confidence 355578899999997 999888777765444
No 349
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.40 E-value=1.3e+02 Score=22.67 Aligned_cols=7 Identities=29% Similarity=0.244 Sum_probs=4.0
Q ss_pred CEEEEEE
Q psy17592 84 KWALIYF 90 (183)
Q Consensus 84 k~vll~f 90 (183)
+|+|..|
T Consensus 80 ~P~l~lf 86 (188)
T COG3117 80 APVLTLF 86 (188)
T ss_pred cceEEEE
Confidence 4555555
No 350
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=25.30 E-value=80 Score=22.95 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=26.5
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 89 YFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 89 ~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
+|...-||. |-.-.+.|.++..++.- .+....+.++
T Consensus 3 ~~~D~~cP~-cy~~~~~l~~~~~~~~~-----~i~~~p~~l~ 38 (192)
T cd03022 3 FYFDFSSPY-SYLAHERLPALAARHGA-----TVRYRPILLG 38 (192)
T ss_pred EEEeCCChH-HHHHHHHHHHHHHHhCC-----eeEEeeeeHH
Confidence 456789998 99999999999987742 3555555444
No 351
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=25.15 E-value=83 Score=22.22 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=16.8
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHhh
Q psy17592 90 FGFTHCPDICPDELEKMAAVVNKID 114 (183)
Q Consensus 90 f~~t~C~~~C~~~~~~l~~l~~~~~ 114 (183)
|++.-| +|..+...|+++.+.+.
T Consensus 54 i~Y~p~--~~~~~v~~L~~l~~~~~ 76 (130)
T PF11303_consen 54 ITYDPC--LPPDQVAKLKALAKSCL 76 (130)
T ss_pred EEECCC--CCHHHHHHHHHHHhccC
Confidence 344455 49999999999988743
No 352
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=25.02 E-value=3e+02 Score=20.59 Aligned_cols=49 Identities=6% Similarity=0.163 Sum_probs=34.0
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecC-CHHHHHHHHhhcCeeEeeCC
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTG-TVEQVAAACKAYRVYFSAGP 175 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~gv~~~~~~ 175 (183)
+++.+..+.- ..+++.+...|.+...|.. +.+.+.+=...+|-||+..|
T Consensus 116 g~~w~vfTaT------~~lr~~~~rlgl~~~~La~Ad~~rl~~~~~~WGsYY~~~P 165 (179)
T PF12261_consen 116 GFEWVVFTAT------RQLRNLFRRLGLPPTVLADADPSRLGDDRASWGSYYDHQP 165 (179)
T ss_pred CCCEEEEeCC------HHHHHHHHHcCCCceeccccCHhHcCcChhhhhhhhcCCC
Confidence 5666666543 5778888888888777755 55555555667888887655
No 353
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=24.94 E-value=2.3e+02 Score=19.37 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=24.1
Q ss_pred CeeEEEEEeCCCC-CcHHHHHHHHHHhCCCeEEecCCHHH
Q psy17592 121 NITPIFISVDPER-DTPELVGKYVKEFSPKFIGLTGTVEQ 159 (183)
Q Consensus 121 ~v~~v~Is~dp~~-d~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (183)
.+.+|.|+-|-.. +..+.+..++++++.++... ++.++
T Consensus 42 ka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~-~sk~e 80 (117)
T TIGR03677 42 IAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV-KKKED 80 (117)
T ss_pred CccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe-CCHHH
Confidence 5777777777533 23567777778887776553 45555
No 354
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=24.93 E-value=1.1e+02 Score=20.52 Aligned_cols=9 Identities=22% Similarity=0.039 Sum_probs=3.8
Q ss_pred CeeEEEEEe
Q psy17592 121 NITPIFISV 129 (183)
Q Consensus 121 ~v~~v~Is~ 129 (183)
++.+-.|..
T Consensus 59 ~I~~k~i~~ 67 (101)
T PF13721_consen 59 GIAVKSIEQ 67 (101)
T ss_pred CCCcceEEe
Confidence 344444443
No 355
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=24.88 E-value=2.4e+02 Score=19.50 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=20.1
Q ss_pred CeeEEEEEeCCCC-CcHHHHHHHHHHhCCCeEEecCCHHH
Q psy17592 121 NITPIFISVDPER-DTPELVGKYVKEFSPKFIGLTGTVEQ 159 (183)
Q Consensus 121 ~v~~v~Is~dp~~-d~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (183)
.+.+|.|+-|-.. +..+.+..++++++.++..+ ++.++
T Consensus 46 kakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~-~tk~e 84 (122)
T PRK04175 46 IAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV-PSKKD 84 (122)
T ss_pred CccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE-CCHHH
Confidence 4566666665422 12355666666666665443 34444
No 356
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=24.45 E-value=1e+02 Score=18.90 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=20.1
Q ss_pred CCCeeecCccCCCEEEEEEEcCCCCCCcHHHHHHH
Q psy17592 72 NNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKM 106 (183)
Q Consensus 72 ~G~~v~l~~~~gk~vll~f~~t~C~~~C~~~~~~l 106 (183)
+|-.+.+-++.+..+.|.|-. .|.. |....-.|
T Consensus 15 dGGdv~lv~v~~~~V~V~l~G-aC~g-C~~s~~Tl 47 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLTG-ACSG-CPSSDMTL 47 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEES-SCCS-SCCHHHHH
T ss_pred cCCcEEEEEecCCEEEEEEEe-CCCC-CCCHHHHH
Confidence 455666666766677788854 4554 65544444
No 357
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=24.37 E-value=4.1e+02 Score=25.09 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=30.7
Q ss_pred CCCCCcHHHHHHHHHHhCCCeEEecCCHHH-HHHHHhhcCee
Q psy17592 130 DPERDTPELVGKYVKEFSPKFIGLTGTVEQ-VAAACKAYRVY 170 (183)
Q Consensus 130 dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~gv~ 170 (183)
||-+++....-+.+++.|....+++||... ...++++.|+.
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 444555566667778889999999997665 45689999984
No 358
>COG3236 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.35 E-value=62 Score=23.41 Aligned_cols=17 Identities=35% Similarity=0.315 Sum_probs=13.9
Q ss_pred CEEEEEEEcCCCCCCcH
Q psy17592 84 KWALIYFGFTHCPDICP 100 (183)
Q Consensus 84 k~vll~f~~t~C~~~C~ 100 (183)
+-..||||.||-|..|-
T Consensus 13 ~~~~iyFy~t~~~ygcF 29 (162)
T COG3236 13 QDTYIYFYSTSDPYGCF 29 (162)
T ss_pred cceEEEEEeccCCCccc
Confidence 45789999999997673
No 359
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=24.20 E-value=2.2e+02 Score=23.27 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHHH---HHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 104 EKMAAV---VNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 104 ~~l~~l---~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
|.+++. ++.+... ....++++|+++...-+.++++++++++
T Consensus 238 p~l~~~I~l~e~la~~--~~~~~VvgIslNt~~l~~~e~~~~~~~~ 281 (301)
T PF07755_consen 238 PPLEEEIELIEALAGT--KPPAKVVGISLNTSGLSEEEAKAAIERI 281 (301)
T ss_dssp --HHHHHHHHHHCCCG--C---EEEEEECC-TTS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhcc--CCCccEEEEEEECCCCCHHHHHHHHHHH
Confidence 445444 4444433 2456799999998777767666665554
No 360
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=24.14 E-value=1.9e+02 Score=23.06 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=39.5
Q ss_pred EEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC--CC------------cHH-HHHHHHHHhCCCe
Q psy17592 86 ALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE--RD------------TPE-LVGKYVKEFSPKF 150 (183)
Q Consensus 86 vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~--~d------------~~~-~~~~~~~~~~~~~ 150 (183)
++|-+---.|-. -...... +.+++.++ ++.+++|-+|.. .+ +.. .+..|++.+..+|
T Consensus 167 lilLISDG~~~~-~e~~~~~---~~r~a~e~----~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpY 238 (266)
T cd01460 167 LLLIISDGRGEF-SEGAQKV---RLREAREQ----NVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPY 238 (266)
T ss_pred EEEEEECCCccc-CccHHHH---HHHHHHHc----CCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCe
Confidence 455555555543 2222222 23334433 788999988854 11 112 7889999988888
Q ss_pred EEecCCHHHH
Q psy17592 151 IGLTGTVEQV 160 (183)
Q Consensus 151 ~~l~~~~~~~ 160 (183)
..+.-+.+.+
T Consensus 239 y~~~~~~~~l 248 (266)
T cd01460 239 YVIVRDLNQL 248 (266)
T ss_pred EEEecChhHh
Confidence 8776665554
No 361
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.07 E-value=1e+02 Score=17.38 Aligned_cols=10 Identities=30% Similarity=0.139 Sum_probs=4.4
Q ss_pred CCCCCCCchh
Q psy17592 11 RNKTDKFPIT 20 (183)
Q Consensus 11 ~~~~~~~~~~ 20 (183)
+||-|++...
T Consensus 13 RNMVRKg~~S 22 (45)
T PF11688_consen 13 RNMVRKGGTS 22 (45)
T ss_pred HHHHHccCcc
Confidence 4454444333
No 362
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.05 E-value=3.2e+02 Score=20.69 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=28.0
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCC
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGT 156 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~ 156 (183)
.++.|+|.++ ++++.+.+.+++.++++..|.|+
T Consensus 52 ~~~~VgVf~~---~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 52 HIDKVCVVVN---PDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred CCCEEEEEeC---CCHHHHHHHHHhCCCCEEEECCC
Confidence 5778888888 58899999999999999888884
No 363
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=23.95 E-value=2.7e+02 Score=21.09 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=33.4
Q ss_pred HHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcC
Q psy17592 107 AAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYR 168 (183)
Q Consensus 107 ~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 168 (183)
.+..++++.. ++.+++|.+.. .+.+.++..+.+-+....+...+.+.+..+...+.
T Consensus 125 ~~~a~~lk~~----gv~i~~VgvG~--~~~~~L~~ias~~~~~~~f~~~~~~~l~~~~~~l~ 180 (224)
T cd01475 125 SEVAAKARAL----GIEMFAVGVGR--ADEEELREIASEPLADHVFYVEDFSTIEELTKKFQ 180 (224)
T ss_pred HHHHHHHHHC----CcEEEEEeCCc--CCHHHHHHHhCCCcHhcEEEeCCHHHHHHHhhhcc
Confidence 3344455543 78888888763 34566777665443334455566667777776653
No 364
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=23.85 E-value=2.5e+02 Score=19.36 Aligned_cols=33 Identities=12% Similarity=0.321 Sum_probs=18.8
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGL 153 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l 153 (183)
++.+..|.+.+..+..+.+++.++.-|-.+...
T Consensus 126 ~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~~ 158 (172)
T PF13519_consen 126 GITIYTVGIGSDSDANEFLQRLAEATGGRYFHV 158 (172)
T ss_dssp TEEEEEEEES-TT-EHHHHHHHHHHTEEEEEEE
T ss_pred CCeEEEEEECCCccHHHHHHHHHHhcCCEEEEe
Confidence 566666666654444456666666665555555
No 365
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.72 E-value=1.7e+02 Score=19.32 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=14.3
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCC
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPK 149 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~ 149 (183)
+..++.+|.++. .+++...+.++.+|.+
T Consensus 30 g~~~~~lTNns~-~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 30 GKPVVFLTNNSS-RSREEYAKKLKKLGIP 57 (101)
T ss_dssp TSEEEEEES-SS-S-HHHHHHHHHHTTTT
T ss_pred CCCEEEEeCCCC-CCHHHHHHHHHhcCcC
Confidence 456666666543 3445555555666543
No 366
>PRK00509 argininosuccinate synthase; Provisional
Probab=23.61 E-value=4.2e+02 Score=22.57 Aligned_cols=53 Identities=6% Similarity=0.016 Sum_probs=30.8
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCe------EEecC-CHHHHHHHHhhcCeeEee
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKF------IGLTG-TVEQVAAACKAYRVYFSA 173 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~------~~l~~-~~~~~~~~~~~~gv~~~~ 173 (183)
+...|+=......++....+..++...+.. ..+.- ..+++.++++++|+....
T Consensus 109 G~~~IA~G~t~kGnDq~rf~~g~~al~pel~VisPlre~~~~tK~eir~~A~~~Gipv~~ 168 (399)
T PRK00509 109 GADAVAHGCTGKGNDQVRFELGIAALAPDLKVIAPWREWDLKSREELIAYAEEHGIPIPV 168 (399)
T ss_pred CCCEEEeCCCcCCCCHHHHHHHHHHhCCCCeeecchhhcCCCCHHHHHHHHHHcCCCCCC
Confidence 455554433322244555555566655433 22322 678889999999998754
No 367
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=23.33 E-value=46 Score=27.74 Aligned_cols=23 Identities=22% Similarity=0.664 Sum_probs=20.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhhC
Q psy17592 92 FTHCPDICPDELEKMAAVVNKIDG 115 (183)
Q Consensus 92 ~t~C~~~C~~~~~~l~~l~~~~~~ 115 (183)
-++||. |...+..|+++.+++..
T Consensus 94 ~t~~p~-~~~~~~~lq~~~~~lN~ 116 (361)
T PF06122_consen 94 QTLCPQ-CGNIMDKLQKIAQALNQ 116 (361)
T ss_pred HHhCHH-HHHHHHHHHHHHHHHHh
Confidence 479998 99999999999998764
No 368
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.07 E-value=2.1e+02 Score=18.13 Aligned_cols=35 Identities=9% Similarity=-0.006 Sum_probs=25.6
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCH
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTV 157 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~ 157 (183)
.-.+|+|.+.. ...+.+.+.+++.|..+..++++.
T Consensus 41 a~vlvGi~~~~--~~~~~l~~~l~~~g~~~~dls~ne 75 (81)
T cd04907 41 GRVLVGIQVPD--ADLDELKERLDALGYPYQEETDNP 75 (81)
T ss_pred eeEEEEEEeCh--HHHHHHHHHHHHcCCCeEECCCCH
Confidence 34567777652 256788888888999998888764
No 369
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=22.97 E-value=1.7e+02 Score=17.10 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=13.9
Q ss_pred EEEcCCCCCCcHHHHHHHHHH
Q psy17592 89 YFGFTHCPDICPDELEKMAAV 109 (183)
Q Consensus 89 ~f~~t~C~~~C~~~~~~l~~l 109 (183)
-|+..+||. |....-.|...
T Consensus 3 Ly~~~~s~~-~~~~~~~L~~~ 22 (74)
T cd03051 3 LYDSPTAPN-PRRVRIFLAEK 22 (74)
T ss_pred EEeCCCCcc-hHHHHHHHHHc
Confidence 356778998 98866655544
No 370
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=22.71 E-value=3e+02 Score=22.96 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCCc-----HHHHHHHHHHHHHhhCCCCCCCeeEEEE-EeCCCCCcHHHHHHHHHHhCCCeEEecCC
Q psy17592 95 CPDIC-----PDELEKMAAVVNKIDGQPNVPNITPIFI-SVDPERDTPELVGKYVKEFSPKFIGLTGT 156 (183)
Q Consensus 95 C~~~C-----~~~~~~l~~l~~~~~~~~~~~~v~~v~I-s~dp~~d~~~~~~~~~~~~~~~~~~l~~~ 156 (183)
|+ | ..-...+.++.++++-+ +|-.... ..|+..-....+++++++.|.++..+-+|
T Consensus 291 C~--~~~~p~~~R~~~i~~lv~~~~~D----GVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D 352 (377)
T TIGR03190 291 CP--TKDYPVHTRYDHVLGLAKEYNVQ----GAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFD 352 (377)
T ss_pred CC--CcCCCHHHHHHHHHHHHHHhCCC----EEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecC
No 371
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=22.43 E-value=1.8e+02 Score=21.50 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy17592 6 SELPVRNKTDKFPITWKSVAVTAVTGGGILFYMWNL 41 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 41 (183)
...|.++...++...+--++..+++++.+..+.|++
T Consensus 135 V~~~~~~~~sKR~Q~RHR~IG~~VlA~~VA~L~~~F 170 (215)
T PF05084_consen 135 VQEPQAKVPSKRTQKRHRLIGAVVLAVSVAMLTWFF 170 (215)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333333333344444444444444443
No 372
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=22.23 E-value=3e+02 Score=19.62 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=27.2
Q ss_pred CCCEEEEEEEcCCCCCCc--HHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 82 LGKWALIYFGFTHCPDIC--PDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C--~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
+.++|+|.|....+...+ ......++++.+.+++. +..+|.++.-|
T Consensus 59 ~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~----~~~~il~~~~p 106 (183)
T cd04501 59 KPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEAN----GIKVILASPLP 106 (183)
T ss_pred CCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHC----CCcEEEEeCCC
Confidence 456777777554443212 34456777777777654 56666666544
No 373
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=22.15 E-value=2.1e+02 Score=20.95 Aligned_cols=116 Identities=14% Similarity=0.142 Sum_probs=55.2
Q ss_pred hcCCCcccCCCeEEEc-CCCCeeecCcc---CCCEEEEEEEcCCCCCCcHHHHHHHHHHH-------HHhhCCC--CCCC
Q psy17592 55 RNLGKVAIGGKFELVD-CNNKPVKSEDF---LGKWALIYFGFTHCPDICPDELEKMAAVV-------NKIDGQP--NVPN 121 (183)
Q Consensus 55 ~~~~~~~~~p~f~l~d-~~G~~v~l~~~---~gk~vll~f~~t~C~~~C~~~~~~l~~l~-------~~~~~~~--~~~~ 121 (183)
..+..+.-.|+..++. .||+++.+.+. .|+|-|+.|-...-.+.+...+..+.+.. +++.... ...-
T Consensus 28 ~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~ 107 (169)
T PF07976_consen 28 GGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSV 107 (169)
T ss_dssp TTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSS
T ss_pred cCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCe
Confidence 3445555568888876 59999998874 58998888765544433443344444332 2333211 0124
Q ss_pred eeEEEEEeCCCC-----CcHHHHHHHHHHhCCC-eEEecCCHHH---HHHHHhhcCee
Q psy17592 122 ITPIFISVDPER-----DTPELVGKYVKEFSPK-FIGLTGTVEQ---VAAACKAYRVY 170 (183)
Q Consensus 122 v~~v~Is~dp~~-----d~~~~~~~~~~~~~~~-~~~l~~~~~~---~~~~~~~~gv~ 170 (183)
++++.|.-.+.. |=|+.++.+...++.+ |....++... ...+-+.|||.
T Consensus 108 ~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid 165 (169)
T PF07976_consen 108 FDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGID 165 (169)
T ss_dssp EEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBB
T ss_pred eEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCC
Confidence 888888765432 2244444444444433 2333333211 34577778754
No 374
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=22.01 E-value=49 Score=17.37 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=10.8
Q ss_pred CeEEEcCCCCeeecC
Q psy17592 65 KFELVDCNNKPVKSE 79 (183)
Q Consensus 65 ~f~l~d~~G~~v~l~ 79 (183)
.-++.|.+|+++++.
T Consensus 12 ~n~l~Dv~G~~Inl~ 26 (32)
T PF10813_consen 12 HNPLKDVKGNPINLY 26 (32)
T ss_pred CCcccccCCCEEech
Confidence 345778888888765
No 375
>PRK05805 phosphate butyryltransferase; Validated
Probab=21.73 E-value=3e+02 Score=22.28 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHH--HHHHHhCCCeEEecCCHHHHHHHHhhcCe
Q psy17592 104 EKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVG--KYVKEFSPKFIGLTGTVEQVAAACKAYRV 169 (183)
Q Consensus 104 ~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~gv 169 (183)
..++++.++.+.. ...+++...-+ ++..++ ..+++++.-.+.|.|+.+.+.++.+.+|+
T Consensus 3 ~~~~~l~~~a~~~---~~~ri~~~~~~----d~~vl~Aa~~~~~~~~~~~iLVGd~~~I~~~l~~~~l 63 (301)
T PRK05805 3 KSFDEILSKAKEQ---PPKTISVAVAQ----DEPVLEAVKEAKELGIANAILVGDKEKIKEIAKEIDM 63 (301)
T ss_pred hhHHHHHHHHhcC---CCCeEEEeCCC----CHHHHHHHHHHHHCCCceEEEECCHHHHHHHHHHcCC
Confidence 4566777666542 12333333222 333333 33566665567788999999888888774
No 376
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=21.68 E-value=1.6e+02 Score=17.42 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=11.4
Q ss_pred EEcCCCCCCcHHHHHHHHH
Q psy17592 90 FGFTHCPDICPDELEKMAA 108 (183)
Q Consensus 90 f~~t~C~~~C~~~~~~l~~ 108 (183)
+...+||. |....-.|..
T Consensus 4 y~~~~~p~-~~rvr~~L~~ 21 (71)
T cd03037 4 YIYEHCPF-CVKARMIAGL 21 (71)
T ss_pred EecCCCcH-hHHHHHHHHH
Confidence 34678998 9864444433
No 377
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=21.47 E-value=1.6e+02 Score=21.12 Aligned_cols=39 Identities=15% Similarity=0.048 Sum_probs=26.1
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEe
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV 129 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~ 129 (183)
.++-++.++-..|+- |..+...|.+.-. ...+++..+..
T Consensus 6 ~~p~~vvlyDG~C~l-C~~~vrfLi~~D~-------~~~i~f~~~q~ 44 (137)
T COG3011 6 KKPDLVVLYDGVCPL-CDGWVRFLIRRDQ-------GGRIRFAALQS 44 (137)
T ss_pred CCCCEEEEECCcchh-HHHHHHHHHHhcc-------CCcEEEEeccC
Confidence 356666677899996 9997777766522 23566666643
No 378
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=21.40 E-value=2e+02 Score=17.23 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHhCCCeEEe
Q psy17592 123 TPIFISVDPERDTPELVGKYVKEFSPKFIGL 153 (183)
Q Consensus 123 ~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l 153 (183)
.+..++-|+ .+.+.+..|++++|..+..+
T Consensus 29 ~l~v~~d~~--~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 29 VLEVLVDDP--AAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp EEEEEESST--THHHHHHHHHHHHTEEEEEE
T ss_pred EEEEEECCc--cHHHHHHHHHHHCCCEEEEE
Confidence 333444443 57789999999998765544
No 379
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=21.27 E-value=2.1e+02 Score=17.50 Aligned_cols=37 Identities=5% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
|+.+-|.|....... |.+.++.+++.- .+.++.=+++
T Consensus 2 ~~l~~l~f~g~~~~~------piis~l~~~~~v-----~~nIl~g~i~ 38 (76)
T PF09383_consen 2 GRLVRLTFTGNSAQE------PIISQLIREFGV-----DVNILHGNIE 38 (76)
T ss_dssp SEEEEEEEESCSSSS------CHHHHHHHHHT------EEEEEEEEEE
T ss_pred CeEEEEEEcCCCcCc------hHHHHHHHHhCC-----CEEEEEEEeE
Confidence 455667777766654 778889888753 3555555554
No 380
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.18 E-value=1.1e+02 Score=22.98 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=21.3
Q ss_pred CeeEEEEEeCCCCCcHHHHHHHHHHh-C-CCeEEecCC
Q psy17592 121 NITPIFISVDPERDTPELVGKYVKEF-S-PKFIGLTGT 156 (183)
Q Consensus 121 ~v~~v~Is~dp~~d~~~~~~~~~~~~-~-~~~~~l~~~ 156 (183)
.+.+..+|+..-.=..+.+-+|++.+ . +.|..+...
T Consensus 120 ~L~V~~fS~G~L~LPis~VLqym~s~y~lPefV~v~Pk 157 (197)
T COG4698 120 ELSVTSFSLGGLPLPISHVLQYMKSMYDLPEFVVVYPK 157 (197)
T ss_pred EEEEEEeecCCccCCHHHHHHHHHhhccCCceEEEccC
Confidence 34455556553233567888888854 3 677665443
No 381
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=21.02 E-value=5.8e+02 Score=22.46 Aligned_cols=47 Identities=6% Similarity=-0.075 Sum_probs=36.1
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCC
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDP 131 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp 131 (183)
.+..++|-|+||.-=. -+..+|.|-+|+..-.-. .+++.||+++-.+
T Consensus 15 ~~~~~~VIFGAtGDLa-~RKL~PaL~~L~~~~~lp--p~~~~IiG~aR~~ 61 (491)
T PLN02539 15 TGCLSIIVLGASGDLA-KKKTFPALFNLYRQGFLP--PDEVHIFGYARSK 61 (491)
T ss_pred CCCeEEEEeCCccHHH-HhhHHHHHHHHHHcCCCC--CCCcEEEEEECCC
Confidence 3456899999999986 899999999998753221 2379999998764
No 382
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=20.94 E-value=1.4e+02 Score=21.04 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCC--CcHHHHHHHHHHhCCC
Q psy17592 99 CPDELEKMAAVVNKIDGQPNVPNITPIFISVDPER--DTPELVGKYVKEFSPK 149 (183)
Q Consensus 99 C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~--d~~~~~~~~~~~~~~~ 149 (183)
|-+|+..|..+.++.... ..+ .++.+..|... -..+.+++|+++.+..
T Consensus 3 ~sAElnsl~~~~~~~~~~--~~~-~~~Ll~SDT~~G~~~a~il~~~l~~~g~~ 52 (136)
T PF09651_consen 3 ASAELNSLVRLLEKGKDD--DKD-EVVLLHSDTPDGRLCAEILKEYLEEKGIN 52 (136)
T ss_dssp G-HHHHHHHHHHHHHT----GGG-EEEEEEESSHHHHHHHHHHHHHHHHTT-E
T ss_pred ccHhHHHHHHHHHhCccc--cCc-EEEEEeCCCHHHHHHHHHHHHHHHHcCCe
Confidence 677888888877765543 112 77778777421 1456778888887654
No 383
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=20.67 E-value=4.1e+02 Score=23.29 Aligned_cols=58 Identities=14% Similarity=0.017 Sum_probs=41.5
Q ss_pred CCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 83 GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 83 gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
....+|-|+||.--. =+..+|.|-+++++-.- .+...|++++-.+. +.+..++++++.
T Consensus 6 ~~~~lvIFGatGDLA-~RKL~PALy~L~~~g~l---~~~~~IiG~aR~~~--s~e~f~~~~~~~ 63 (483)
T COG0364 6 EPFDLVIFGATGDLA-RRKLFPALYRLYKEGLL---PEDFRIIGVARSKW--SNEEFRALVREA 63 (483)
T ss_pred CcceEEEEcccchhh-hhhHHHHHHHHHHcCCC---CCCceEEEEecCcC--ChHHHHHHHHHH
Confidence 345788999999886 88889999999875322 34788999988743 445555555443
No 384
>PRK04011 peptide chain release factor 1; Provisional
Probab=20.65 E-value=3.6e+02 Score=23.00 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHh
Q psy17592 99 CPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEF 146 (183)
Q Consensus 99 C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~ 146 (183)
|..+.-.+.++.+++++.. +.+-.++++-++|.++..+..+....++
T Consensus 5 ~~~~~~~~k~~~~~l~~~~-g~~t~~iSlyip~~~~i~~~~~~l~~e~ 51 (411)
T PRK04011 5 SSKEKYEFKKLLEELKKKK-GRGTELISLYIPPGRPISDVVNQLRQEY 51 (411)
T ss_pred hHHHHHHHHHHHHHHHhCc-CCCceEEEEEECCCCcHHHHHHHHHHHH
Confidence 5667778888888887653 5688999999999877666555544444
No 385
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=20.51 E-value=5.9e+02 Score=22.75 Aligned_cols=45 Identities=4% Similarity=-0.100 Sum_probs=35.6
Q ss_pred CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCC
Q psy17592 84 KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE 132 (183)
Q Consensus 84 k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~ 132 (183)
..++|-|+||.-=. .+..+|.|-+|+..-.- .+++.||+++-...
T Consensus 54 ~~~iVIFGATGDLA-~RKL~PAL~~L~~~g~l---p~~~~IiG~aR~~~ 98 (542)
T PTZ00309 54 ALTIIVLGASGDLA-KKKTFPALFQLYCEGLL---PSEVNIVGYARSKM 98 (542)
T ss_pred CeEEEEecCccHHh-hhhHHHHHHHHHHcCCC---CCCCEEEEEeCCCC
Confidence 46899999999986 99999999999864221 24899999987643
No 386
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.46 E-value=1.6e+02 Score=20.06 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=8.9
Q ss_pred CCCCCchhHHHHHHHHHH
Q psy17592 13 KTDKFPITWKSVAVTAVT 30 (183)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~ 30 (183)
|++++-++.+-+++++++
T Consensus 4 ~~~qrGFTLiElLVvl~I 21 (149)
T COG2165 4 MKKQRGFTLIELLVVLAI 21 (149)
T ss_pred ccccCCcchHHHHHHHHH
Confidence 445555665544444433
No 387
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=20.32 E-value=4.7e+02 Score=21.17 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=49.6
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcC
Q psy17592 89 YFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYR 168 (183)
Q Consensus 89 ~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 168 (183)
.|..-.-|. |+.....+.+..++..-. ..+--++.-.--|..+|+.+.+.|. ..|.+..+.+.-.|.+ +|+..|
T Consensus 125 ~f~~m~~~y-~~~Lr~~l~~~a~~~~~~--~~~~GvYv~~~GPrfET~AEir~~r-~~GaDvVGMStvPEvi--lAre~G 198 (289)
T PRK08931 125 AHVSMAHPV-CPRLGDRLAAAARAEGIT--VHRGGTYLCMEGPQFSTLAESKLYR-SWGCDVIGMTNMPEAK--LAREAE 198 (289)
T ss_pred cCCCCCccc-CHHHHHHHHHHHHHcCCe--EecceEEEEeeCCCCCCHHHHHHHH-HcCCCEeccCccHHHH--HHHHcC
Confidence 344444455 877777777777764321 0001133444557778999987764 7788887777766663 888888
Q ss_pred eeEee
Q psy17592 169 VYFSA 173 (183)
Q Consensus 169 v~~~~ 173 (183)
+.|-.
T Consensus 199 l~~a~ 203 (289)
T PRK08931 199 ICYAT 203 (289)
T ss_pred CceEE
Confidence 66543
No 388
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=20.32 E-value=1.4e+02 Score=20.11 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=22.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCeEEecCCHHHHHHHHhhcCeeE
Q psy17592 125 IFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYF 171 (183)
Q Consensus 125 v~Is~dp~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~ 171 (183)
+-+.++ +.|++-+|++++|.+|.+....... ...++|+-.|
T Consensus 51 v~l~F~----skE~Ai~yaer~G~~Y~V~~p~~r~--~~~ksY~dNF 91 (101)
T PF04800_consen 51 VRLKFD----SKEDAIAYAERNGWDYEVEEPKKRK--RRPKSYADNF 91 (101)
T ss_dssp CEEEES----SHHHHHHHHHHCT-EEEEE-STT--------------
T ss_pred eEeeeC----CHHHHHHHHHHcCCeEEEeCCCCCc--CCcccHHHhC
Confidence 666776 8999999999999999887554322 2344454433
No 389
>KOG1687|consensus
Probab=20.26 E-value=2.8e+02 Score=19.91 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=30.9
Q ss_pred cCccCC--CEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhC
Q psy17592 78 SEDFLG--KWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115 (183)
Q Consensus 78 l~~~~g--k~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~ 115 (183)
.+-.+| |.+=|..+-..||+.-.+.+-.+-+|+++.+.
T Consensus 119 YSvvRGcDriiPVDiYvPGCPPtaEAllygilqLqkKi~R 158 (168)
T KOG1687|consen 119 YSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKKIKR 158 (168)
T ss_pred ehhhccccceeeeeeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344576 88889999999999777778899999988764
No 390
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=20.11 E-value=2.8e+02 Score=19.94 Aligned_cols=46 Identities=15% Similarity=0.345 Sum_probs=27.2
Q ss_pred ccCCCEEEEE-EEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCee-EEEEEeC
Q psy17592 80 DFLGKWALIY-FGFTHCPDICPDELEKMAAVVNKIDGQPNVPNIT-PIFISVD 130 (183)
Q Consensus 80 ~~~gk~vll~-f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~-~v~Is~d 130 (183)
+|+||++++= |.+.--.. =......|+++.+.+++. +++ ++.|+.|
T Consensus 47 qfKGRv~l~P~~~Y~~~~~-~~~~~~~L~~w~~~l~~~----GFkhV~~lT~D 94 (142)
T PF10673_consen 47 QFKGRVLLFPAFTYLKEED-EEELVERLNDWCEELKES----GFKHVFYLTSD 94 (142)
T ss_pred hcCceEEecCCeeeecccc-hhHHHHHHHHHHHHHHhc----CCcEEEEEecC
Confidence 5789966432 33333332 222334788888888876 444 5666877
No 391
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=20.08 E-value=4.6 Score=26.12 Aligned_cols=9 Identities=22% Similarity=0.243 Sum_probs=0.4
Q ss_pred CCCchhHHH
Q psy17592 15 DKFPITWKS 23 (183)
Q Consensus 15 ~~~~~~~~~ 23 (183)
+++++.|++
T Consensus 63 kKrrwlwLl 71 (81)
T PF14812_consen 63 KKRRWLWLL 71 (81)
T ss_dssp --------T
T ss_pred ccchhHHHH
Confidence 333444443
No 392
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.07 E-value=3.1e+02 Score=18.92 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=15.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeC
Q psy17592 94 HCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130 (183)
Q Consensus 94 ~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~d 130 (183)
.||. |...--.|... -.+ .+.+.|.-|.+.
T Consensus 23 ~Cp~-c~~iEGlLa~~-P~l-----~~~ldV~rV~f~ 52 (112)
T PF11287_consen 23 YCPH-CAAIEGLLASF-PDL-----RERLDVRRVDFP 52 (112)
T ss_pred ECCc-hHHHHhHHhhC-hhh-----hhcccEEEeCCC
Confidence 4887 87744333332 222 235666666554
No 393
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=20.06 E-value=4.2e+02 Score=20.49 Aligned_cols=56 Identities=11% Similarity=0.183 Sum_probs=35.5
Q ss_pred CCCEEEEEEEcCCCCCCcHHHHHHHHHHHHHhhCCCCCCCeeEEEEEeCCCCCcHHHHHHHHHHhCCCe
Q psy17592 82 LGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKF 150 (183)
Q Consensus 82 ~gk~vll~f~~t~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~~v~Is~dp~~d~~~~~~~~~~~~~~~~ 150 (183)
+|+. ++-...+.|+- ..-.++-+++..+. +-.++.|+++ ++++.+.+.+..++.++
T Consensus 22 ~g~~-~lI~G~pGsGK----T~f~~qfl~~~~~~-----ge~vlyvs~~---e~~~~l~~~~~~~g~d~ 77 (260)
T COG0467 22 RGSV-VLITGPPGTGK----TIFALQFLYEGARE-----GEPVLYVSTE---ESPEELLENARSFGWDL 77 (260)
T ss_pred CCcE-EEEEcCCCCcH----HHHHHHHHHHHHhc-----CCcEEEEEec---CCHHHHHHHHHHcCCCH
Confidence 4554 45555655553 44444444444432 5678899988 68899999888887554
Done!