RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17592
(183 letters)
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin
fold, metal transport, structural genomics,
spine2-complexes; NMR {Homo sapiens}
Length = 171
Score = 211 bits (538), Expect = 8e-71
Identities = 66/126 (52%), Positives = 91/126 (72%)
Query: 58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
G G F L+D + DF G+W L+YFGFTHCPDICPDELEK+ VV +++ +P
Sbjct: 1 GSFTGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEP 60
Query: 118 NVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177
+P + P+FI+VDPERD E + +YV++F P+ +GLTG+ +QVA A +YRVY++AGPKD
Sbjct: 61 GLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKD 120
Query: 178 KDSDYI 183
+D DYI
Sbjct: 121 EDQDYI 126
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding
protein, mitochondrial assembly factor, redox, nickel,
disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP:
c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A
2hrf_A 2hrn_A 1wp0_A
Length = 164
Score = 202 bits (516), Expect = 2e-67
Identities = 72/122 (59%), Positives = 92/122 (75%)
Query: 62 IGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPN 121
+GG F L + +D+LG+W LIYFGFTHCPD+CP+ELEKM VV++ID +P+
Sbjct: 2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPD 61
Query: 122 ITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSD 181
+TP+FIS+DPERDT E + YVKEFSPK +GLTGT E+V +AYRVY+S GPKD+D D
Sbjct: 62 LTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDED 121
Query: 182 YI 183
YI
Sbjct: 122 YI 123
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding
protein; 1.80A {Saccharomyces cerevisiae} SCOP:
c.47.1.10 PDB: 2b7j_A
Length = 200
Score = 198 bits (505), Expect = 2e-65
Identities = 59/142 (41%), Positives = 88/142 (61%), Gaps = 2/142 (1%)
Query: 43 KAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDE 102
+ + E E R GK ++GG F L D ++ LGK+++IYFGF++CPDICPDE
Sbjct: 1 RRLETQKEAEANRGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDE 60
Query: 103 LEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAA 162
L+K+ +N + + + P+FI+ DP RD+P ++ +Y+ +F P +GLTGT ++V
Sbjct: 61 LDKLGLWLNTLSSKYG-ITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN 119
Query: 163 ACKAYRVYFSAGPKDK-DSDYI 183
ACK YRVYFS P K DY+
Sbjct: 120 ACKKYRVYFSTPPNVKPGQDYL 141
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 189 bits (483), Expect = 2e-62
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 61 AIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVP 120
F L PV+ F K L++FGFT CPD+CP L + K+ +
Sbjct: 14 PKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQ-E 71
Query: 121 NITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDS 180
+ IF+SVDPERD PE+ +Y K F P F+GL+G+ E V A + + V++
Sbjct: 72 RVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPG 131
Query: 181 DYI 183
+Y+
Sbjct: 132 EYL 134
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural
genomics, montreal-kingsto bacterial structural genomics
initiative, BSGI; 1.70A {Bacillus subtilis} SCOP:
c.47.1.10 PDB: 1on4_A
Length = 174
Score = 149 bits (378), Expect = 2e-46
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
F + + K V E G+ L F FT+C ICP M + K+ + ++ I
Sbjct: 16 FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAEN--IDVRII 73
Query: 126 FISVDPERDTPELVGKYVKEFSPKFIG---LTGTV--EQVAAACKAYRVYFSAGPKDKDS 180
SVDPE D P+ + K+ + F LTG E A K+++ K +
Sbjct: 74 SFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIV----KKPEG 129
Query: 181 DYI 183
+
Sbjct: 130 EDQ 132
>3me7_A Putative uncharacterized protein; electron transfer protein,
electron transport, structural GE PSI-2, protein
structure initiative; 1.50A {Aquifex aeolicus} PDB:
3me8_A
Length = 170
Score = 137 bits (346), Expect = 9e-42
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115
+LG + G LVD + ++ GK ++ +THC CP + + V+ K+
Sbjct: 2 SLGT-YVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLG- 59
Query: 116 QPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIG---LTG-TVEQVAAACKAYRVYF 171
+ I + DP +DT E + ++ KE+ G + T E + A F
Sbjct: 60 -TPGKDFWVITFTFDP-KDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRF 117
Query: 172 SAGPKD 177
D
Sbjct: 118 MTAGND 123
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 43.8 bits (104), Expect = 3e-06
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 9/89 (10%)
Query: 57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
L K G + + V +GK +YF + CP C +A K
Sbjct: 4 LAKYLPG--ATNLLSKSGEVSLGSLVGKTVFLYFSASWCPP-CRGFTPVLAEFYEKHHVA 60
Query: 117 PNVPNITPIFISVDPERDTPELVGKYVKE 145
N + + IS D + Y +
Sbjct: 61 KNF-EV--VLISWD---ENESDFHDYYGK 83
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 43.6 bits (103), Expect = 5e-06
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 57 LGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
L K G E + + V+ + GK YF + CP ++ +K
Sbjct: 4 LDKYLPG--IEKLRRGDGEVEVKSLAGKLVFFYFSASWCPP-ARGFTPQLIEFYDKFHES 60
Query: 117 PNVPNITPIFISVDPERDTPELVGKYVKE 145
N +F + D + + Y +
Sbjct: 61 KNF---EVVFCTWD---EEEDGFAGYFAK 83
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 43.1 bits (102), Expect = 6e-06
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 11/115 (9%)
Query: 59 KVAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115
+ +G K + D D K+ +++F + C C E K+ K
Sbjct: 4 PLLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGH-CQQETPKLYDWWLKNRA 62
Query: 116 QPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
+ I +++ E K+++ + Y +Y
Sbjct: 63 K----GIQVYAANIE---RKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIY 110
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 42.4 bits (100), Expect = 1e-05
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 8/106 (7%)
Query: 66 FELVDCNNKPVKSEDFL--GKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNIT 123
+LV N V + + L YF CP C +A + +++ +
Sbjct: 7 IKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPP-CRGFTPILADMYSEL--VDDSAPFE 63
Query: 124 PIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRV 169
IF+S D + + + +Y+ E ++ + + Y +
Sbjct: 64 IIFVSSD---RSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGI 106
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 41.6 bits (98), Expect = 2e-05
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 9/118 (7%)
Query: 56 NLGKVAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNK 112
+ K +G K F + F ++ L++ C C + +E + A
Sbjct: 1 SNAKNRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHA-CAEMIEGLKA-SPV 58
Query: 113 IDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
I+G + + I D + + K+ +F+ ++ + Y +
Sbjct: 59 INGFTAAKKLKVLSIYPD---EELDEWKKHRNDFAKEWTNGYDKELVIKNK-NLYDLR 112
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 40.8 bits (96), Expect = 4e-05
Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Query: 56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115
N G A F V + + ++ +++F C + C + A + ++
Sbjct: 2 NAGMKAA--DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSN-CRKFEKLFAEIPAFVEM 58
Query: 116 QPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
N + + I D + E +I + + Y +
Sbjct: 59 VEN-GTLRVLAIYPD---ENREEWATKAVYMPQGWIVGWNKAGDIRTR-QLYDIR 108
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 40.8 bits (96), Expect = 5e-05
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
F L D + K V + D GK LI F F CP C E+ K+ N +
Sbjct: 11 FSLPDLHGKTVSNADLQGKVTLINFWFPSCPG-CVSEMPKIIKTANDYKNKNFQ------ 63
Query: 126 FISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRV 169
++V D E V +YVK++ F + + V +A+
Sbjct: 64 VLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVG---QAFGT 104
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 40.3 bits (95), Expect = 7e-05
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
F L D N K ++ D GK + F T C C E MA Q + +
Sbjct: 9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYMANQYKHFKSQ----GVEIV 63
Query: 126 FISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
++V ++ V ++K + F + T QV AY V
Sbjct: 64 AVNVG---ESKIAVHNFMKSYGVNFPVVLDTDRQVL---DAYDVS 102
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 40.0 bits (94), Expect = 7e-05
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 11/113 (9%)
Query: 60 VAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
+A G +D V DF GK+ L+ F F C C E + N +
Sbjct: 3 LATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSW-CRKETPYLLKTYNAFKDK 61
Query: 117 PNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRV 169
T +S D E K ++E + + + V ++Y +
Sbjct: 62 ----GFTIYGVSTD---RREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI 107
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 39.6 bits (93), Expect = 8e-05
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 13/105 (12%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
F + P GK A+++F CP C E ++ V +T +
Sbjct: 7 FTATTLSGAPFDGASLQGKPAVLWFWTPWCP-FCNAEAPSLSQVAAANPA------VTFV 59
Query: 126 FISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
I+ + +V +++ F L + Y V
Sbjct: 60 GIATR---ADVGAMQSFVSKYNLNFTNLNDADGVIW---ARYNVP 98
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 40.0 bits (94), Expect = 1e-04
Identities = 25/116 (21%), Positives = 36/116 (31%), Gaps = 16/116 (13%)
Query: 59 KVAIGGK----FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKID 114
+ G F D N K V D GK+ I T C C EL + + K
Sbjct: 2 SLRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGP-CRGELPALKELEEKYA 60
Query: 115 GQPNVPNITPIFISVDPERDTPELVGKYVKEFS-PKFIGLTGTVEQVAAACKAYRV 169
G+ +I + +S D + V + GT AY +
Sbjct: 61 GK----DIHFVSLSCD---KNKKAWENMVTKDQLKGIQLHMGTDRTFM---DAYLI 106
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 39.8 bits (93), Expect = 1e-04
Identities = 16/103 (15%), Positives = 26/103 (25%), Gaps = 7/103 (6%)
Query: 43 KAKQNALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDE 102
+ L G G+ + + GK YF + CP C
Sbjct: 8 HHHSSGLVPRGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPP-CRGF 66
Query: 103 LEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKE 145
++ K N I S D + + Y +
Sbjct: 67 TPQLVEFYEKHHDSKNF---EIILASWD---EEEDDFNAYYAK 103
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 38.6 bits (90), Expect = 2e-04
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 7/88 (7%)
Query: 58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
K ++ + GK YF + CP ++ +
Sbjct: 3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPP-SRAFTPQLIDFYKAHAEKK 61
Query: 118 NVPNITPIFISVDPERDTPELVGKYVKE 145
N + IS D ++ E Y +
Sbjct: 62 NF---EVMLISWD---ESAEDFKDYYAK 83
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 38.9 bits (91), Expect = 2e-04
Identities = 20/123 (16%), Positives = 27/123 (21%), Gaps = 14/123 (11%)
Query: 48 ALEKERRRNLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMA 107
+LE + I +L D D GK LI F + +
Sbjct: 2 SLEIPEDKIKEASII--DIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAM-SAAHNLALR 58
Query: 108 AVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFS-PKFIGLTGTVEQVAAACKA 166
+ NK Q IS+D G
Sbjct: 59 ELYNKYASQ----GFEIYQISLD---GDEHFWKTSADNLPWVCVRDANGAYSSYI---SL 108
Query: 167 YRV 169
Y V
Sbjct: 109 YNV 111
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 38.2 bits (89), Expect = 4e-04
Identities = 9/104 (8%), Positives = 31/104 (29%), Gaps = 1/104 (0%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
+ + + DF + ++ C C E + + + ++ N
Sbjct: 42 GDSLMEEGTQINLSDFENQVVILNAWGQWCAP-CRSESDDLQIIHEELQAAGNGDTPGGT 100
Query: 126 FISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRV 169
+ ++ + ++ +V + + + AA+
Sbjct: 101 VLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPA 144
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 38.3 bits (89), Expect = 4e-04
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 16/132 (12%)
Query: 51 KERRRNLGKVAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMA 107
R + + F L + + + + G +++F CP C + +
Sbjct: 2 NAPRAAGHSEEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPS-CVYMADLLD 60
Query: 108 AVVNKIDG---------QPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVE 158
+ K + P DTPE+ K++ + +
Sbjct: 61 RLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDG 120
Query: 159 QVAAACKAYRVY 170
+ + + V
Sbjct: 121 SLV---EKFNVR 129
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 37.4 bits (87), Expect = 6e-04
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 19/120 (15%)
Query: 57 LGKVAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKI 113
V G E + N+ + LG++ L+ F + + ++A VNK
Sbjct: 4 TEGVNPGDLAPRIEFLG-NDAKASFHNQLGRYTLLNFWAAYDAE-SRARNVQLANEVNKF 61
Query: 114 DGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPK----FIGLTGTVEQVAAACKAYRV 169
I IS+D + + VK F G ++ K Y +
Sbjct: 62 GPD----KIAMCSISMDEKESIFT---ETVKIDKLDLSTQFHEGLGKESELY---KKYDL 111
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 36.5 bits (85), Expect = 0.002
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
F L N + VK D G+ ++ F T CP C +E+ M + + G+ +
Sbjct: 11 FTLNTLNGEVVKLSDLKGQVVIVNFWATWCPP-CREEIPSMMRLNAAMAGK----PFRML 65
Query: 126 FISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRV 169
+S+D V ++ ++ L ++V K Y
Sbjct: 66 CVSID--EGGKVAVEEFFRKTGFTLPVLLDADKRVG---KLYGT 104
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 36.4 bits (85), Expect = 0.002
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 66 FELVDCNNKPVKSEDFLG-KWALIYF---GFTHCPDICPDELEKMAAVVNKIDGQPNVPN 121
F L D N + V + G K L+ F FT IC EL+++ + + + +
Sbjct: 18 FTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTG---ICQGELDQLRDHLPEFEND----D 70
Query: 122 ITPIFISVDPE 132
+ ISV P
Sbjct: 71 SAALAISVGPP 81
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 36.2 bits (84), Expect = 0.002
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 12/119 (10%)
Query: 60 VAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
V IG F + + K V GK ++ F + C C E+ + +
Sbjct: 7 VRIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGV-CRKEMPFIEKDIWLKHKD 65
Query: 117 PNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGP 175
+ I I D + E V + K + + Y + +
Sbjct: 66 N--ADFALIGIDRD---EPLEKVLAFAKSTGVTYPLGLDPGADIF---AKYALRDAGIT 116
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 36.2 bits (84), Expect = 0.002
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
F V + KP S GK ++ F T CP C E+ M V + T +
Sbjct: 17 FSGVTVDGKPFSSASLKGKAYIVNFFATWCPP-CRSEIPDMVQVQKTWASR----GFTFV 71
Query: 126 FISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAA--ACKAYRVY 170
I+V+ + V Y+K + + T E + A +
Sbjct: 72 GIAVN---EQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGIT 115
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 35.9 bits (83), Expect = 0.003
Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 3/81 (3%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
+ +N+P K LI F + CP +C EL + + +
Sbjct: 21 STMKTADNRPASVYLKKDKPTLIKFWASWCP-LCLSELGQAEKWAQDAKFSSAN--LITV 77
Query: 126 FISVDPERDTPELVGKYVKEF 146
K+
Sbjct: 78 ASPGFLHEKKDGEFQKWYAGL 98
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 35.3 bits (82), Expect = 0.004
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYF 90
FEL D K VK GK ++ F
Sbjct: 13 FELPDTELKKVKLSALKGKVVVLAF 37
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein,
structural genomics, riken struc genomics/proteomics
initiative, RSGI; 1.80A {Thermus thermophilus} SCOP:
c.47.1.10 PDB: 2ywo_A
Length = 188
Score = 35.4 bits (82), Expect = 0.004
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCP 96
L I EL D + F + F HCP
Sbjct: 8 PLESPLI--DAELPDPRGGRYRLSQFHEPLLAVVFMCNHCP 46
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 35.0 bits (81), Expect = 0.005
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
F + E LGK A+++F CP C E + V P +T +
Sbjct: 8 FSAKTLDGHDFHGESLLGKPAVLWFWAPWCP-TCQGEAPVVGQVAASH------PEVTFV 60
Query: 126 FISVDPERDTPELVGKYVKEF 146
++ D + ++V ++
Sbjct: 61 GVAGL---DQVPAMQEFVNKY 78
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 34.9 bits (81), Expect = 0.005
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMAAVVNKIDGQPNVPNI 122
F L + DF GK ++ T IC + + + +D N
Sbjct: 25 FSLTTTDLSKKSLADFDGKKKVLSVVPSIDT---GICSTQTRRFNEELAGLD------NT 75
Query: 123 TPIFISVDP 131
+ +S+D
Sbjct: 76 VVLTVSMDL 84
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 35.1 bits (81), Expect = 0.006
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
D + KP K DF GK L+ T C C E+ + + K+ G N +
Sbjct: 43 LAFEDADGKPKKLSDFRGKTLLVNLWATWCVP-CRKEMPALDELQGKLSGP----NFEVV 97
Query: 126 FISVDPERDTPELVGKYVKEF 146
I++D PE ++KE
Sbjct: 98 AINID--TRDPEKPKTFLKEA 116
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 34.7 bits (80), Expect = 0.006
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 9/116 (7%)
Query: 60 VAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNV 119
+++ +N P + ++ T C C E+ M+
Sbjct: 1 MSLSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGP-CRKEMPAMSKWYKAQKKG--- 56
Query: 120 PNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGP 175
++ + I++ DT + +G ++K+ + T K Y P
Sbjct: 57 -SVDMVGIAL----DTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLP 107
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 34.7 bits (80), Expect = 0.009
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 60 VAIGGK---FELVDCNNKPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMAAVVNKI 113
IG K F LV + V F GK ++ T +C + K + ++
Sbjct: 52 PQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDT---GVCAASVRKFNQLAGEL 108
Query: 114 DGQPNVPNITPIFISVDP 131
+ N + IS D
Sbjct: 109 E------NTVVLCISSDL 120
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 34.2 bits (79), Expect = 0.010
Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMAAVVNKIDGQPNVPNI 122
+V + + +I T +C E +K ++ ++ +
Sbjct: 30 AVVVTKDLQEKIVGGAKDVVQVIITVPSLDT---PVCETETKKFNEIMAGME------GV 80
Query: 123 TPIFISVD 130
+S+D
Sbjct: 81 DVTVVSMD 88
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 33.5 bits (77), Expect = 0.017
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 12/69 (17%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMAAVVNKIDGQPNVPNI 122
F LV + V DF K ++ T +C + K K+ N
Sbjct: 26 FILVGNDLADVALNDFASKRKVLNIFPSIDT---GVCATSVRKFNQQAAKL------SNT 76
Query: 123 TPIFISVDP 131
+ IS D
Sbjct: 77 IVLCISADL 85
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 33.4 bits (77), Expect = 0.022
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMAAVVNKIDGQPNVPNI 122
F ++D + V D+ GK LI T +C + K + +K +G
Sbjct: 29 FTVLDNDLNQVTLADYAGKKKLISVVPSIDT---GVCDQQTRKFNSDASKEEGI------ 79
Query: 123 TPIFISVDP 131
+ IS D
Sbjct: 80 -VLTISADL 87
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET:
CIT; 2.15A {Sulfolobus solfataricus}
Length = 161
Score = 33.0 bits (76), Expect = 0.022
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 66 FELVDCNNKPVKSEDFLGKWALI-YF 90
FE + N + + D++GK ++ YF
Sbjct: 11 FEGIADNGEKISLSDYIGKHNIVLYF 36
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
hypothetical protein; 2.05A {Sinorhizobium meliloti}
Length = 218
Score = 33.2 bits (76), Expect = 0.029
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWA-LIYFGFTHCP 96
LG A F L D +F A L+ F CP
Sbjct: 33 TLGTRAA--DFVLPDAGGNLFTLAEFKDSPALLVAFISNRCP 72
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 33.0 bits (76), Expect = 0.030
Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 24/124 (19%)
Query: 60 VAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDI----CPDELEKMAAVVNK 112
A+G F L + + S+ F GK L+ P + C +
Sbjct: 18 PAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNI----FPSVDTPVCATSVRTFDERAAA 73
Query: 113 IDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFS 172
T + +S D P ++ + + + + Y V +
Sbjct: 74 -------SGATVLCVSK----DLPFAQKRFCGAEGTENVMPASAFRD--SFGEDYGVTIA 120
Query: 173 AGPK 176
GP
Sbjct: 121 DGPM 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.035
Identities = 35/174 (20%), Positives = 51/174 (29%), Gaps = 43/174 (24%)
Query: 41 LKKAKQNALEKERRRNLGKV-AI-GGK------F-ELVDCNN--KPVKSEDFLGKWA--L 87
K +AL + ++ AI GG+ F EL D + D + A L
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV-GDLIKFSAETL 195
Query: 88 IYFGFTH--CPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPE---------RDTP 136
T + L + + N P+ + I IS P T
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENP-SNTPDKDYLLSIPISC-PLIGVIQLAHYVVTA 253
Query: 137 ELVGKYVKEFSPKFIGLTGTVEQVAAAC----------------KAYRVYFSAG 174
+L+G E G TG + + A KA V F G
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Score = 28.9 bits (64), Expect = 1.1
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 34/90 (37%)
Query: 118 NVPNITPIFISVDPERDTPELVGKY-----------------------VKEFSPKFIG-- 152
+P T F + D ELVGK+ + EF ++
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 153 --------LTGTVEQVAAACKAY-RVYFSA 173
L + K + Y +A
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITA 129
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 32.6 bits (75), Expect = 0.036
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYF 90
L G W +IYF
Sbjct: 18 LPLSLSGGTQTTLRAHAGHWLVIYF 42
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 32.3 bits (74), Expect = 0.045
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYF 90
L+ + D+ +W ++YF
Sbjct: 34 HPLMLSGSTCKTLSDYTNQWLVLYF 58
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 32.3 bits (74), Expect = 0.056
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 74 KPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMA 107
+ S++ GKW +++F FT +CP E+ +
Sbjct: 36 TTITSDEHPGKWRVVFFWPKDFTF---VCPTEIAAFS 69
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 31.5 bits (72), Expect = 0.062
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
FEL+ + K + D+ GK + F + C IC L + + V +T +
Sbjct: 5 FELMGVDGKTYRLSDYKGKKVYLKFWASWCS-ICLASLPDTDEIAKEAGDDYVV--LTVV 61
Query: 126 FISVDPERDTPELVGKYVKEFSPK 149
E + + K K
Sbjct: 62 SPGHKGE-QSEADFKNWYKGLDYK 84
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 31.7 bits (73), Expect = 0.077
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 16/77 (20%)
Query: 74 KPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISVD 130
V +D G+W++ +F FT + P EL +A ++ + +S D
Sbjct: 21 IEVTEKDTEGRWSVFFFYPADFTF---VSPTELGDVADHYEELQKL----GVDVYSVSTD 73
Query: 131 PE------RDTPELVGK 141
+ E + K
Sbjct: 74 THFTHKAWHSSSETIAK 90
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 31.1 bits (71), Expect = 0.10
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDI----CPDELEKMAAVVNKIDGQPNVPN 121
F ++ + + D GK +I P I C + + K+ +
Sbjct: 27 FTVLTNSLEEKSLADMKGKVTIISV----IPSIDTGVCDAQTRRFNEEAAKLG------D 76
Query: 122 ITPIFISVD 130
+ IS D
Sbjct: 77 VNVYTISAD 85
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 30.8 bits (70), Expect = 0.14
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 60 VAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
V G F L+D +PV ++++ + C C E + V +
Sbjct: 5 VKPGEPLPDFLLLDPKGQPVTPATVSKPAVIVFWA-SWCTV-CKAEFPGLHRVAEE---- 58
Query: 117 PNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
+ IS + RDT E+V +Y+K + L ++ ++V
Sbjct: 59 ---TGVPFYVISRE-PRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL 108
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 31.0 bits (71), Expect = 0.15
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 74 KPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMA 107
K V + GK+ +++F FT +CP E+ + +
Sbjct: 27 KKVSLSSYKGKYVVLFFYPMDFTF---VCPTEIIQFS 60
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 30.6 bits (70), Expect = 0.17
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 74 KPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMA 107
V D GKW+++ F F+ +CP ELE +
Sbjct: 22 FEVTEADLKGKWSIVVFYPADFSF---VCPTELEDVQ 55
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 30.6 bits (69), Expect = 0.18
Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 10/104 (9%)
Query: 72 NNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFISV-- 129
N++ + +ED GK ++ CP + + + ID + I +
Sbjct: 19 NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES----QVQVIGLHSVF 74
Query: 130 -DPERDTPELVGKYVKEFS---PKFIGLTGTVEQVAAACKAYRV 169
+ TPE + ++ EF P + + +++ + K YR+
Sbjct: 75 EHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRL 118
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 30.6 bits (70), Expect = 0.18
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 74 KPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMA 107
K V + GKW +++F FT +CP E+ + +
Sbjct: 27 KKVALTSYKGKWLVLFFYPMDFTF---VCPTEICQFS 60
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 30.7 bits (70), Expect = 0.18
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 74 KPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMA 107
V + + GK+ ++ F FT + P E+ +
Sbjct: 43 DEVSLDKYKGKYVVLAFIPLAFTF---VSPTEIIAFS 76
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 30.3 bits (69), Expect = 0.19
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 58 GKVAIGGK---FELVDCNNKPVKSEDFL--GKWALIYF 90
G V +G K F L + + +PV + L G+ A++ F
Sbjct: 3 GLVELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIF 40
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 30.7 bits (70), Expect = 0.19
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 74 KPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMA 107
K +K D+ GK+ + +F FT +CP E+ +
Sbjct: 68 KELKLSDYRGKYLVFFFYPLDFTF---VCPTEIIAFS 101
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 30.7 bits (70), Expect = 0.20
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 52 ERRRNLGKVAIGGK---FEL---VDCNNKPVKSEDFLGKWALIYF---GFTHCPDICPDE 102
A+ F+ V K + +DF GK+ +++F FT +CP E
Sbjct: 19 SHMLEDPAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTF---VCPTE 75
Query: 103 LEKMA 107
+ +
Sbjct: 76 IIAFS 80
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 30.7 bits (70), Expect = 0.20
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 74 KPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMA 107
K +K D+ GK+ + +F FT +CP E+
Sbjct: 39 KELKLTDYRGKYLVFFFYPLDFTF---VCPTEIIAFG 72
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 30.7 bits (69), Expect = 0.22
Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 16/122 (13%)
Query: 44 AKQNALEKERRRNLGKVAIGGK--------FELVDCNNKPVKSEDFLGKWALIYFGFTHC 95
QNA ++ G L NKP+ + GK LI F C
Sbjct: 35 NAQNAQLSNCSDGAAQLESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSC 94
Query: 96 PDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTG 155
+ C + + I V E V V + + G++
Sbjct: 95 IN-CQRAIPHVVGWYQAYKDSGLA------VIGVHTPEYAFEKVPGNVAKGAANL-GISY 146
Query: 156 TV 157
+
Sbjct: 147 PI 148
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 30.3 bits (69), Expect = 0.23
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 74 KPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMA 107
K + +D+ GK+ +++F FT +CP E+ +
Sbjct: 60 KEICLKDYRGKYVVLFFYPADFTF---VCPTEIIAFS 93
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 30.0 bits (68), Expect = 0.23
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
F+L + + + GK L+ F + CP C DE+ M +V ++ +
Sbjct: 24 FKLPTLSGENKSLAQYRGKIVLVNFWASWCPY-CRDEMPSMDRLVKSFPKG----DLVVL 78
Query: 126 FISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
++V+ + PE + F TG V+ + Y
Sbjct: 79 AVNVE--KRFPEKYRRAPVSF-NFLSDATGQVQ------QRYGAN 114
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 30.2 bits (69), Expect = 0.24
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 74 KPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMA 107
K VK D+ GK+ +++F FT + P E+ +
Sbjct: 25 KEVKLSDYKGKYVVLFFYPLDFTF---VAPTEIIAFS 58
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 30.0 bits (68), Expect = 0.34
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 74 KPVKSEDFLGKWALIYF---GFTHCPDICPDELEKMA 107
K +K D+ GK+ + +F FT +CP E+
Sbjct: 82 KELKLTDYRGKYLVFFFYPLDFTF---VCPTEIIAFG 115
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical
2-Cys peroxiredoxin, oxidoreductase; 1.80A
{Saccharomyces cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 29.5 bits (67), Expect = 0.40
Identities = 4/37 (10%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 59 KVAIGGK---FELVDCNNKPVKSEDFL--GKWALIYF 90
++ IG L++ +N + + + + +
Sbjct: 6 ELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFV 42
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 29.5 bits (66), Expect = 0.53
Identities = 8/25 (32%), Positives = 8/25 (32%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYF 90
F LVD E F LI
Sbjct: 31 FMLVDDQKHDAALESFSHTPKLIVT 55
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 28.4 bits (64), Expect = 0.88
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 66 FELVDC--NNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNIT 123
N + + + K LI+F C C + + ++ +K Q NV
Sbjct: 10 LTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHL-CKEAMPQVNEFRDKYQDQLNV---- 64
Query: 124 PIFISVD--PERDTPELVGKYVKEFSPKF 150
+ + + + P + + E
Sbjct: 65 -VAVHMPRSEDDLDPGKIKETAAEHDITQ 92
>3p8b_B Transcription antitermination protein NUSG; transcription
elongation factor, RNA polymerase, transferase
transcription complex; 1.80A {Pyrococcus furiosus} PDB:
3qqc_D
Length = 152
Score = 27.8 bits (62), Expect = 1.5
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 8/67 (11%)
Query: 102 ELEKMAAVVNKIDGQPNVPNITPIFISVD-------PERDTPEL-VGKYVKEFSPKFIGL 153
E V I G + + P + + L G V+ + F G
Sbjct: 49 EAPNKGVVDEAIRGIRHARGVLPGEVPFKEIEHFLEEKPAVSGLEPGDLVEVIAGPFKGQ 108
Query: 154 TGTVEQV 160
V ++
Sbjct: 109 KAKVVKI 115
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 27.4 bits (61), Expect = 2.2
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 9/90 (10%)
Query: 66 FELVDCNN--KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNIT 123
++ N + D GK +I CP + V +
Sbjct: 9 LQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED----KVA 64
Query: 124 PIFISVD---PERDTPELVGKYVKEFSPKF 150
+ + E TP + ++ E+ KF
Sbjct: 65 VLGLHTVFEHHEAMTPISLKAFLHEYRIKF 94
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A
alanine ligase, MURF protein; HET: 1LG; 2.50A
{Streptococcus pneumoniae} PDB: 2am2_A*
Length = 454
Score = 27.9 bits (63), Expect = 2.2
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 142 YVKEFSPKFIGLTG------TVEQVAAACKA-YRVYFSAG 174
Y+++ + +TG T + +A Y+ Y + G
Sbjct: 94 YLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQG 133
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein;
heterodimer, beta-alpha-barrels, oxidoreductase; HET:
B12; 1.90A {Carboxydothermus hydrogenoformans} PDB:
2ycl_B*
Length = 310
Score = 26.9 bits (59), Expect = 3.7
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 96 PDICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTP--ELVGKYVKEFSPKFIGL 153
PD ++A V + +VP + I E+D ++G+ + +
Sbjct: 100 PDGQNRSGAELAEVCKAVADAIDVPLM--IIGCGVEEKDAEIFPVIGEALSGRNCLLSSA 157
Query: 154 T-GTVEQVAAACKAYRV 169
T + + A C +
Sbjct: 158 TKDNYKPIVATCMVHGH 174
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta
sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 452
Score = 26.3 bits (59), Expect = 6.2
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 142 YVKEFSPKFIGLTGTV------EQVAAACKA-YRVYFSAG 174
++ + + LTG+ E AA ++AG
Sbjct: 94 VRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG 133
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural
genomics, PSI-2, structure initiative, joint center for
structural genomics; HET: MSE; 1.66A {Archaeoglobus
fulgidus} SCOP: c.8.9.1
Length = 192
Score = 25.5 bits (56), Expect = 8.6
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 150 FIGLTGTVEQVAAACKAYRVYFSAGP 175
IG G E+V A + YF+
Sbjct: 115 IIGKGGMSEEVVEAMRGKAAYFAFTG 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.423
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,962,972
Number of extensions: 176763
Number of successful extensions: 444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 85
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)