RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17592
(183 letters)
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ),
soluble domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 160
Score = 84.0 bits (206), Expect = 2e-21
Identities = 71/120 (59%), Positives = 90/120 (75%)
Query: 64 GKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNIT 123
G F L + +D+LG+W LIYFGFTHCPD+CP+ELEKM VV++ID +P++T
Sbjct: 1 GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLT 60
Query: 124 PIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKDKDSDYI 183
P+FIS+DPERDT E + YVKEFSPK +GLTGT E+V +AYRVY+S GPKD+D DYI
Sbjct: 61 PLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYI 120
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ),
soluble domain {Baker's yeast(Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 169
Score = 64.4 bits (155), Expect = 4e-14
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
GK ++GG F L D ++ LGK+++IYFGF++CPD + +
Sbjct: 1 GKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPD-ICPDELDKLGLWLNTLSSK 59
Query: 118 NVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177
+ P+FI+ DP RD+P ++ +Y+ +F P +GLTGT ++V ACK YRVYFS P
Sbjct: 60 YGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNV 119
Query: 178 KDSD 181
K
Sbjct: 120 KPGQ 123
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ),
soluble domain {Bacillus subtilis [TaxId: 1423]}
Length = 172
Score = 50.0 bits (118), Expect = 9e-09
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
F + + K V E G+ L F FT+C ICP M + K+ + I I
Sbjct: 14 FTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRI--I 71
Query: 126 FISVDPERDTPELVGKYVKEFSPKF---IGLTGTVEQV--AAACKAYRVYFSAGPKDKDS 180
SVDPE D P+ + K+ + F LTG + A K+++ +
Sbjct: 72 SFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQV 131
Query: 181 D 181
Sbjct: 132 I 132
>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein
TlpA, soluble domain {Bradyrhizobium japonicum [TaxId:
375]}
Length = 176
Score = 35.4 bits (80), Expect = 0.001
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP 100
D + KP K DF GK L+ T C
Sbjct: 39 LAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRK 73
>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 166
Score = 34.5 bits (78), Expect = 0.003
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 16/119 (13%)
Query: 60 VAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
A+G F L + + S+ F GK L+ + +C + D +
Sbjct: 17 PAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTF-------DER 69
Query: 117 PNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGP 175
T + +S D G E + + Y V + GP
Sbjct: 70 AAASGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSF------GEDYGVTIADGP 122
>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 197
Score = 34.4 bits (78), Expect = 0.004
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 10/119 (8%)
Query: 58 GKVAIGGK---FEL---VDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVN 111
G IG F+ VD K VK D+ GK+ +++F +CP E+ +
Sbjct: 3 GNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAE 62
Query: 112 KIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
+ +SVD + + KE + + + + Y V
Sbjct: 63 DFRKL----GCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVL 117
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata
[TaxId: 5656]}
Length = 144
Score = 33.2 bits (75), Expect = 0.007
Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
++ + GK YF + CP + + + + N +
Sbjct: 11 TNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK----NFEVM 66
Query: 126 FISVDPERDTPELVGKYVKEFSPKFI 151
IS D ++ E Y + +
Sbjct: 67 LISWD---ESAEDFKDYYAKMPWLAL 89
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 32.5 bits (73), Expect = 0.012
Identities = 23/121 (19%), Positives = 34/121 (28%), Gaps = 14/121 (11%)
Query: 60 VAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
G K F LV + V F GK ++ + +C + K + +I
Sbjct: 18 PQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI--- 74
Query: 117 PNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPK 176
N + IS D G A +AY V + GP
Sbjct: 75 ---DNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRN-----AEFLQAYGVAIADGPL 126
Query: 177 D 177
Sbjct: 127 K 127
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae
[TaxId: 727]}
Length = 164
Score = 32.9 bits (74), Expect = 0.012
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
F LV + V DF K ++ + +C + K K+ N +
Sbjct: 25 FILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL------SNTIVL 78
Query: 126 FISVDP 131
IS D
Sbjct: 79 CISADL 84
>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC
{Salmonella typhimurium [TaxId: 90371]}
Length = 186
Score = 32.5 bits (73), Expect = 0.015
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 66 FELVDCNN---KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMA 107
F+ N V +D G+W++ +F + P EL +A
Sbjct: 10 FKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVA 54
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 134
Score = 32.0 bits (71), Expect = 0.017
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 65 KFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP 100
+F + E LGK A+++F CP
Sbjct: 7 QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQG 42
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide
isomerase/thioredoxin TTHA0593 {Thermus thermophilus
[TaxId: 274]}
Length = 187
Score = 31.8 bits (71), Expect = 0.028
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP 100
EL D + F + F HCP +
Sbjct: 15 AELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKG 49
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 31.0 bits (69), Expect = 0.040
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNV 119
L +N+P K LI F + CP + + + N+
Sbjct: 6 STLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANL 59
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 134
Score = 30.7 bits (68), Expect = 0.046
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 65 KFELVDCNNKPVKSEDFLGKWALIYFGFTHCP 96
+F + P GK A+++F CP
Sbjct: 6 QFTATTLSGAPFDGASLQGKPAVLWFWTPWCP 37
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 30.8 bits (68), Expect = 0.049
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 7/121 (5%)
Query: 58 GKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQP 117
G + + S++ GKW ++ F D ++AA D +
Sbjct: 19 GGDLSKVDAKQPGDYFTTITSDEHPGKWRVV---FFWPKDFTFVCPTEIAAFSKLND-EF 74
Query: 118 NVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVYFSAGPKD 177
+ + +S+D E + ++ + F L+ ++ +A V + G D
Sbjct: 75 EDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKREL---SQAAGVLNADGVAD 131
Query: 178 K 178
+
Sbjct: 132 R 132
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 30.3 bits (67), Expect = 0.073
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 72 NNKPVKSEDFLGKWALIYFGFTHCP 96
N + + + K LI+F C
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCH 42
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Crithidia fasciculata [TaxId:
5656]}
Length = 167
Score = 30.2 bits (67), Expect = 0.074
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 11/120 (9%)
Query: 58 GKVAIGGK---FE----LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVV 110
G + F+ + + K V + GK+ +++F +CP E+ + +
Sbjct: 1 GAAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDA 60
Query: 111 NKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAYRVY 170
+ I S D E + K+ + + ++ A +AY V
Sbjct: 61 KRFAEINTE----VISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVL 116
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Length = 194
Score = 30.1 bits (67), Expect = 0.094
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 68 LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMA 107
+ + K V + GKW +++F +CP E+ + +
Sbjct: 18 MPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFS 57
>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA
{Bacillus subtilis [TaxId: 1423]}
Length = 137
Score = 29.4 bits (64), Expect = 0.15
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP 100
F L D N K ++ D GK + F T C
Sbjct: 8 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKK 42
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 153
Score = 29.3 bits (64), Expect = 0.17
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDIC 99
F L D N + V + G ++ F
Sbjct: 11 FTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGI 44
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 28.7 bits (63), Expect = 0.26
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 68 LVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP 100
+V K + +DF GK+ +++F +CP
Sbjct: 11 VVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCP 43
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC
{Amphibacillus xylanus [TaxId: 1449]}
Length = 166
Score = 28.7 bits (63), Expect = 0.30
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 66 FELVDCNN----KPVKSEDFLGKWALIYFGFTHCPDICPDELEKMA 107
F + V D GKW+++ F +CP ELE +
Sbjct: 10 FRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQ 55
>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 144
Score = 28.4 bits (62), Expect = 0.32
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 7/86 (8%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPI 125
+ + V +GK +YF + CP + N +
Sbjct: 11 ATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAK----NFEVV 66
Query: 126 FISVDPERDTPELVGKYVKEFSPKFI 151
IS D + Y + +
Sbjct: 67 LISWD---ENESDFHDYYGKMPWLAL 89
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY,
DsbE) {Escherichia coli [TaxId: 562]}
Length = 136
Score = 28.1 bits (61), Expect = 0.40
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 65 KFELVDCNNKPVKSEDFL-GKWALIYFGFTHCP 96
+ E +D + +++ GK L+ T CP
Sbjct: 1 RLESLDNPGQFYQADVLTQGKPVLLNVWATWCP 33
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 220
Score = 28.2 bits (62), Expect = 0.41
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 66 FELVDCNNKPVKSEDFLG-KWALIYFGFTHCPDICPDELEKMA 107
FE + ++ DFLG W +++ +C EL + A
Sbjct: 10 FEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAA 51
>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata
[TaxId: 5656]}
Length = 144
Score = 28.1 bits (61), Expect = 0.41
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 66 FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICP 100
E + + V+ + GK YF + CP
Sbjct: 9 IEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARG 43
>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 163
Score = 28.0 bits (61), Expect = 0.50
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 60 VAIGGK---FELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDGQ 116
+ +G K F L + DF GK ++ + IC + + + +D
Sbjct: 16 LQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNT 75
Query: 117 PNV 119
+
Sbjct: 76 VVL 78
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii
[TaxId: 5861]}
Length = 170
Score = 27.5 bits (60), Expect = 0.80
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 70 DCNNKPVKSEDFLG-KWALIYFGFTHCPDICPDELEKMAAVVNKIDGQPNVPNITPIFIS 128
D V DF+G K+ L+YF + D ++ A+ +D N+ + S
Sbjct: 13 DNTFGEVSLSDFIGKKYVLLYF---YPLDFTFVCPSEIIALDKALDSFKE-RNVELLGCS 68
Query: 129 VDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAY 167
VD + + + I T + + ++Y
Sbjct: 69 VDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSY 107
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 24.8 bits (54), Expect = 1.8
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 41 LKKAKQNALEKERRRNL 57
+K+ E+ RR L
Sbjct: 1 MKRESHKHAEQARRNRL 17
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 25.3 bits (55), Expect = 2.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 40 NLKKAKQNALEKERRRNL 57
N+K+ N LE++RR L
Sbjct: 4 NVKRRTHNVLERQRRNEL 21
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
yoelii [TaxId: 73239]}
Length = 219
Score = 25.9 bits (56), Expect = 2.5
Identities = 11/112 (9%), Positives = 29/112 (25%), Gaps = 4/112 (3%)
Query: 56 NLGKVAIGGKFELVDCNNKPVKSEDFLGKWALIYFGFTHCPDICPDELEKMAAVVNKIDG 115
+LG + + + WA+++ H D P ++A + +
Sbjct: 3 HLGATFPNFTAKASGIDGDFELYKYIENSWAILFS---HPNDFTPVCTTELAELGKMHED 59
Query: 116 QPNVPNITPIFISVDPERDTPELVGKYVKEFSPKFIGLTGTVEQVAAACKAY 167
N I S + + + + + ++
Sbjct: 60 FLK-LNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKL 110
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 160
Score = 25.4 bits (54), Expect = 3.6
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 60 VAIGGK---FELVDCNNKPVKSEDFL--GKWALIYFGFTHCPDICPDELEKMA 107
V +G K F L + + +PV + L G+ A++ F +C EL
Sbjct: 2 VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFR 54
>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 23.5 bits (51), Expect = 8.2
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 16/59 (27%)
Query: 92 FTHCPD--ICPDELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKEFSP 148
T I P+ + AV N P+F+ T E+VG + EF+P
Sbjct: 30 RTWSRRSTIFPNMIGLTIAVHN-------GRQHVPVFV-------TDEMVGHKLGEFAP 74
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 23.2 bits (50), Expect = 9.6
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 101 DELEKMAAVVNKIDGQPNVPNITPIFISVDPERDTPELVGKYVKE 145
+EL K+ ++ P+ ++ I+ + + D+P + VK+
Sbjct: 28 EELVKLVTHFEEMTEHPSGSDL--IYYPKEGDDDSPSGIVNTVKQ 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.423
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 736,526
Number of extensions: 34950
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 39
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)