BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17594
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L2N|A Chain A, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
pdb|3L2N|B Chain B, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
Length = 395
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGH 548
KK ++++AR HPGET + +++ G++N LL D P + L F I+P NPDG RGH
Sbjct: 175 KKSIWITARQHPGETXAEWLVEGLLNQLLDNDCPTSKALLDKANFYIVPNXNPDGSVRGH 234
Query: 549 YRTDTRGVNLNRYYTNPSPVYHPSVF 574
RT+ G NLNR + PS P V+
Sbjct: 235 LRTNAVGANLNREWQTPSLERSPEVY 260
>pdb|3K2K|A Chain A, Crystal Structure Of Putative Carboxypeptidase
(Yp_103406.1) From Burkholderia Mallei Atcc 23344 At
2.49 A Resolution
Length = 403
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 111/278 (39%), Gaps = 55/278 (19%)
Query: 310 KADCAGTEFENGNRT----WFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHS 365
+AD NR+ WF+F + G + V N N + G YR+ +
Sbjct: 40 RADAIRLRVRGDNRSEFAQWFYFRLTGARGERCVX-TFENANDCA--YPAGWRD-YRAVA 95
Query: 366 T--RNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDA 423
+ R W R+ PT SYDG T I T F + Y YSE + H L A
Sbjct: 96 SYDRVNWFRV---PT-SYDGQXLT------IDHTPEFDSIHYAYFEPYSE-ERHSEFLGA 144
Query: 424 KFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRP 483
+ P + R T+EGR L+ + + P++A
Sbjct: 145 V---QQXPQASVVELGR-----TVEGRPXSLVVLGT----------------PDEAGAAK 180
Query: 484 KKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT----RDDPIASLLRKMYLFKIIPML 539
KK V++ AR HPGE+ + + + G++ L+ DP+A L F I+P
Sbjct: 181 KK------VWIIARQHPGESXAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNX 234
Query: 540 NPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAAR 577
NPDG G+ RT+ G NLNR + P P V R
Sbjct: 235 NPDGSVHGNLRTNAAGANLNREWXEPDAERSPEVLVVR 272
>pdb|4A37|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A37|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A38|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A38|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A39|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
pdb|4A39|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
Length = 388
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 107/269 (39%), Gaps = 58/269 (21%)
Query: 310 KADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRNQ 369
+ D A F+ WFHF ++G + +VN + + S+ +
Sbjct: 41 RPDLASQHFQ-----WFHFKVEGMAPATEHCFTLVNAGQSAYSHAWSGYQAVASYDG-ER 94
Query: 370 WERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYS---YSELQTHLFNLDAKFP 426
W R+ + Y DG F L +S FA+ PYS ++ L ++
Sbjct: 95 WFRVPSQ--YDADGLHFQLE------PEESEVRFAYFEPYSRERHARLVERALGIEG--- 143
Query: 427 PNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKF 486
R V +++GR ++LL + H D+ +
Sbjct: 144 -----------VERLAVGTSVQGRDIELLRVRRH----------------PDSHLK---- 172
Query: 487 TDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDD-PIASLLRKMYLFKIIPMLNPDGVA 545
+++ A+ HPGE + + M G+I L DD + LL K L+ ++P +NPDG
Sbjct: 173 -----LWVIAQQHPGEHMAEWFMEGLIERLQRPDDTEMQRLLEKADLY-LVPNMNPDGAF 226
Query: 546 RGHYRTDTRGVNLNRYYTNPSPVYHPSVF 574
G+ RT+ G +LNR + PS P V+
Sbjct: 227 HGNLRTNAAGQDLNRAWLEPSAERSPEVW 255
>pdb|2QSD|A Chain A, Crystal Structure Of A Protein Il1583 From Idiomarina
Loihiensis
pdb|2QSD|B Chain B, Crystal Structure Of A Protein Il1583 From Idiomarina
Loihiensis
pdb|2QSD|C Chain C, Crystal Structure Of A Protein Il1583 From Idiomarina
Loihiensis
pdb|2QSD|D Chain D, Crystal Structure Of A Protein Il1583 From Idiomarina
Loihiensis
pdb|2QSD|E Chain E, Crystal Structure Of A Protein Il1583 From Idiomarina
Loihiensis
pdb|2QSD|F Chain F, Crystal Structure Of A Protein Il1583 From Idiomarina
Loihiensis
pdb|2QSD|G Chain G, Crystal Structure Of A Protein Il1583 From Idiomarina
Loihiensis
pdb|2QSD|H Chain H, Crystal Structure Of A Protein Il1583 From Idiomarina
Loihiensis
Length = 187
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 361 YRSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFN 420
YR H T E+ EK Y + F F +++ + FT P S +L F+
Sbjct: 69 YRIHLTSEAHEKPEEKRLYFVN---FGGYFPNKLAEYHDFTVVVADSPQSAKQLARAQFS 125
Query: 421 LDAKFPPNEQPNPDDIYYVRECVCYTL 447
A EQ + DD+ V +C+C L
Sbjct: 126 -KAGLADAEQIHKDDLLAVDDCLCVDL 151
>pdb|2QVP|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|C Chain C, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
Length = 275
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 492 VFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRT 551
+ +SA H E+ + G+++FL D L +++ L ++P++NP G A+GH R
Sbjct: 68 LLISAGFHGEESAGPW---GLLHFLSQLD---GELFKRVNL-SVLPLVNPTGFAKGH-RF 119
Query: 552 DTRGVNLNRYY 562
+ G N NR +
Sbjct: 120 NELGENPNRGF 130
>pdb|3IEH|A Chain A, Crystal Structure Of Putative Metallopeptidase
(Yp_001051774.1) From Shewanella Baltica Os155 At 2.45 A
Resolution
Length = 276
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 492 VFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRT 551
+ +SA H E+ + G+++FL + A L ++ L ++P++NP G +RGH R
Sbjct: 69 LLISAGFHGEESAGPW---GLLHFL---SEASADLFERVNL-SLLPLVNPTGFSRGH-RF 120
Query: 552 DTRGVNLNRYYT----NPSPVYHPSV 573
+ G N NR + P H SV
Sbjct: 121 NKYGENPNRGFVFENGKPKANEHTSV 146
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 129 HFHACNFTERIMYLRDRRDGLSREGAGRVAVGKITGLIRSYTLECNYNTGRIVNVVPPSS 188
HFH C R+ L D+ G + G + + S L+ + GR + V+P +
Sbjct: 26 HFHGCGSVNRVTILCDKFSGHPK-GFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84
Query: 189 RDPG 192
PG
Sbjct: 85 NRPG 88
>pdb|3RGW|S Chain S, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 339
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 476 PEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRD 520
P AT K TDK ++ + PG P + VM GVI ++LT D
Sbjct: 128 PTQATPVHKVITDKPIIKV-----PGCPPIAEVMTGVITYMLTFD 167
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 41/152 (26%)
Query: 428 NEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFT 487
NE P +Y + V EGR + +L S H GI EP + ++
Sbjct: 21 NECPGITRVYSIGRSV----EGRHLYVLEFSDHPGIHEPLEPEVKYV------------- 63
Query: 488 DKKVVFLSARVHPGETPSSFVMNGVINFLL----TRDDPIASLLRKMYLFKIIPMLNPDG 543
+H E +M + FL R+ I L++ + I+P +NPDG
Sbjct: 64 --------GNMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRI-HILPSMNPDG 114
Query: 544 ----VARGHY-------RTDTRGVNLNRYYTN 564
A+G R + GV+LNR + +
Sbjct: 115 YEVAAAQGPNKPGYLVGRNNANGVDLNRNFPD 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,997,684
Number of Sequences: 62578
Number of extensions: 700002
Number of successful extensions: 1113
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 11
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)