Query psy17594
Match_columns 579
No_of_seqs 375 out of 1575
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 18:04:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3641|consensus 100.0 8.1E-69 1.8E-73 571.0 17.0 306 230-578 191-517 (650)
2 cd06236 M14_AGBL5_like Peptida 100.0 8.4E-40 1.8E-44 337.3 5.7 206 12-222 87-304 (304)
3 cd06236 M14_AGBL5_like Peptida 100.0 2E-37 4.3E-42 319.8 16.0 146 433-578 11-156 (304)
4 cd06906 M14_Nna1 Peptidase M14 100.0 1.7E-37 3.7E-42 315.4 14.3 130 434-578 11-140 (278)
5 cd06234 M14_Nna1_like_1 A bact 100.0 5.2E-37 1.1E-41 312.4 17.3 144 399-578 1-144 (263)
6 cd06907 M14_AGBL2-3_like Pepti 100.0 5.5E-36 1.2E-40 303.1 13.8 124 435-578 11-134 (261)
7 cd06908 M14_AGBL4_like Peptida 100.0 1.2E-35 2.7E-40 301.9 15.2 131 418-578 1-131 (261)
8 cd06235 M14_Nna1_like_2 Subgro 100.0 2.9E-32 6.2E-37 277.6 14.8 123 436-578 11-133 (258)
9 cd03856 M14_Nna1_like Peptidas 100.0 3E-32 6.5E-37 278.9 13.6 139 401-578 3-141 (269)
10 cd06907 M14_AGBL2-3_like Pepti 100.0 1.3E-32 2.8E-37 278.7 4.7 182 13-224 67-261 (261)
11 cd06906 M14_Nna1 Peptidase M14 100.0 3.6E-31 7.7E-36 269.3 3.3 182 12-222 72-278 (278)
12 cd06237 M14_Nna1_like_3 A bact 99.9 2.1E-27 4.5E-32 240.0 15.2 134 404-578 3-136 (244)
13 cd03872 M14_CPA6 Carboxypeptid 99.9 6E-26 1.3E-30 235.5 15.7 137 409-578 3-172 (300)
14 cd03868 M14_CPD_I The first ca 99.9 7.1E-26 1.5E-30 242.0 15.7 140 409-578 2-160 (372)
15 cd03869 M14_CPX_like Peptidase 99.9 1.3E-25 2.8E-30 240.4 16.2 129 405-564 3-145 (405)
16 cd06247 M14_CPO Peptidase M14 99.9 1.5E-25 3.2E-30 232.5 16.2 138 408-578 4-174 (298)
17 cd06248 M14_CPA_CPB_like Pepti 99.9 1.1E-25 2.3E-30 234.5 15.1 140 408-578 4-176 (304)
18 cd06245 M14_CPD_III The third 99.9 1.6E-25 3.4E-30 238.1 15.8 140 409-578 3-156 (363)
19 smart00631 Zn_pept Zn_pept. 99.9 1.9E-25 4.1E-30 229.7 15.6 138 408-578 1-166 (277)
20 cd03860 M14_CP_A-B_like The Pe 99.9 1.9E-25 4.2E-30 231.6 15.5 137 409-578 2-169 (294)
21 cd03859 M14_CPT Peptidase M14- 99.9 2.6E-25 5.6E-30 230.8 15.8 139 409-578 5-182 (295)
22 PF00246 Peptidase_M14: Zinc c 99.9 6.7E-26 1.5E-30 232.4 11.0 135 414-578 1-162 (279)
23 cd03858 M14_CP_N-E_like Carbox 99.9 2.2E-25 4.7E-30 238.3 15.0 140 409-578 2-161 (374)
24 cd03863 M14_CPD_II The second 99.9 2.4E-25 5.2E-30 237.4 15.3 143 405-578 4-160 (375)
25 cd03870 M14_CPA Peptidase M14 99.9 4.7E-25 1E-29 229.2 14.2 138 407-578 5-175 (301)
26 cd06246 M14_CPB2 Peptidase M14 99.9 8.9E-25 1.9E-29 227.1 15.9 139 407-578 4-175 (300)
27 cd03866 M14_CPM Peptidase M14 99.9 7.9E-25 1.7E-29 233.9 15.7 140 409-578 6-158 (376)
28 cd03865 M14_CPE_H Peptidase M1 99.9 1.1E-24 2.3E-29 233.3 15.6 127 409-565 6-146 (402)
29 cd03864 M14_CPN Peptidase M14 99.9 1.2E-24 2.5E-29 233.2 15.7 140 409-578 2-178 (392)
30 cd03871 M14_CPB Peptidase M14 99.9 2E-24 4.3E-29 224.3 16.0 139 406-578 4-175 (300)
31 cd06227 Peptidase_M14-like_2 A 99.9 2.4E-24 5.2E-29 220.9 15.3 138 409-578 3-168 (272)
32 cd06242 Peptidase_M14-like_1_5 99.9 2.7E-24 5.8E-29 220.3 15.2 136 408-578 2-137 (268)
33 KOG2650|consensus 99.9 1.3E-24 2.9E-29 232.5 13.0 143 403-578 116-293 (418)
34 cd06908 M14_AGBL4_like Peptida 99.9 6E-26 1.3E-30 231.1 2.1 187 12-224 63-261 (261)
35 KOG3641|consensus 99.9 6.8E-26 1.5E-30 243.1 2.6 186 12-225 449-649 (650)
36 cd06905 Peptidase_M14-like_8 A 99.9 5.7E-24 1.2E-28 225.5 16.4 110 408-547 4-115 (360)
37 cd03867 M14_CPZ Peptidase M14- 99.9 3.8E-24 8.2E-29 230.1 14.9 126 409-564 2-141 (395)
38 cd06235 M14_Nna1_like_2 Subgro 99.9 2.3E-24 4.9E-29 219.8 3.5 183 10-221 63-257 (258)
39 cd06239 Peptidase_M14-like_1_2 99.9 5.9E-23 1.3E-27 205.8 12.8 109 438-578 10-118 (231)
40 cd06241 Peptidase_M14-like_1_4 99.9 7.4E-23 1.6E-27 209.4 12.5 131 416-578 1-145 (266)
41 cd06226 M14_CPT_like Peptidase 99.9 6.4E-22 1.4E-26 204.9 14.3 121 438-578 5-168 (293)
42 cd06244 Peptidase_M14-like_1_7 99.9 4.8E-22 1E-26 202.1 10.7 132 443-578 1-153 (268)
43 cd06238 Peptidase_M14-like_1_1 99.9 1.4E-22 3E-27 207.7 5.5 132 443-578 1-160 (271)
44 cd06243 Peptidase_M14-like_1_6 99.9 3E-21 6.5E-26 194.2 11.8 114 443-578 1-114 (236)
45 cd03857 Peptidase_M14-like_1 P 99.8 9.2E-21 2E-25 189.8 11.7 115 443-578 1-115 (226)
46 cd06229 M14_Endopeptidase_I Pe 99.8 1.3E-20 2.8E-25 191.8 10.1 105 446-578 1-156 (255)
47 cd06240 Peptidase_M14-like_1_3 99.8 1.4E-20 3E-25 192.8 9.8 135 440-578 2-162 (273)
48 cd03856 M14_Nna1_like Peptidas 99.8 1.1E-20 2.4E-25 193.7 2.7 184 12-219 73-268 (269)
49 cd06228 Peptidase_M14-like_3 A 99.8 2.4E-19 5.1E-24 187.9 10.7 112 442-578 5-174 (332)
50 cd03862 Peptidase_M14-like_7 A 99.7 5.1E-17 1.1E-21 166.9 11.2 90 488-578 23-139 (273)
51 PRK10602 murein peptide amidas 99.7 1.2E-16 2.7E-21 160.8 8.7 103 438-578 15-143 (237)
52 KOG2649|consensus 99.6 7.3E-16 1.6E-20 164.9 12.6 126 409-564 70-205 (500)
53 cd00596 Peptidase_M14_like The 99.6 3.5E-16 7.5E-21 152.3 7.9 86 492-578 1-89 (196)
54 cd06231 Peptidase_M14-like_4 A 99.6 7.7E-16 1.7E-20 155.2 10.6 106 438-578 15-121 (236)
55 cd06232 Peptidase_M14-like_5 P 99.6 1.1E-15 2.4E-20 151.8 9.7 104 408-564 1-118 (240)
56 COG2866 Predicted carboxypepti 99.6 5.1E-16 1.1E-20 166.0 4.4 206 307-576 22-234 (374)
57 cd06904 M14_MpaA_like Peptidas 99.5 2.3E-14 5E-19 138.7 6.4 79 492-578 1-94 (178)
58 cd06233 Peptidase_M14-like_6 P 99.0 1.2E-09 2.5E-14 112.9 9.9 71 489-566 51-122 (283)
59 cd06250 M14_PaAOTO_like An unc 98.6 1.1E-07 2.5E-12 101.8 7.6 73 489-565 27-105 (359)
60 cd06230 M14_ASTE_ASPA_like The 98.4 4.2E-07 9E-12 92.6 6.5 74 492-575 1-74 (252)
61 cd06255 M14_ASTE_ASPA_like_5 A 98.3 1.4E-06 2.9E-11 91.0 8.1 67 489-564 24-91 (293)
62 cd06251 M14_ASTE_ASPA_like_1 A 98.3 1.3E-06 2.8E-11 90.9 7.0 68 489-565 20-87 (287)
63 cd06254 M14_ASTE_ASPA_like_4 A 98.2 3E-06 6.6E-11 88.1 6.8 70 488-565 16-86 (288)
64 cd06253 M14_ASTE_ASPA_like_3 A 98.1 3.3E-06 7.3E-11 88.3 4.9 74 488-564 18-92 (298)
65 PF04952 AstE_AspA: Succinylgl 98.1 3.6E-06 7.8E-11 87.0 4.7 66 490-564 3-69 (292)
66 cd06252 M14_ASTE_ASPA_like_2 A 98.0 1.2E-05 2.5E-10 84.9 6.2 67 489-564 34-101 (316)
67 TIGR02994 ectoine_eutE ectoine 97.7 5.9E-05 1.3E-09 80.0 6.7 67 489-564 47-114 (325)
68 cd06234 M14_Nna1_like_1 A bact 97.7 1.7E-05 3.8E-10 81.6 2.3 166 14-216 77-262 (263)
69 PF10994 DUF2817: Protein of u 97.6 0.00025 5.4E-09 75.6 9.9 70 488-564 50-120 (341)
70 cd06256 M14_ASTE_ASPA_like_6 A 97.4 0.00022 4.8E-09 75.7 6.1 66 490-565 35-100 (327)
71 PRK02259 aspartoacylase; Provi 97.3 0.00035 7.5E-09 72.9 5.6 64 490-564 3-66 (288)
72 PRK05324 succinylglutamate des 97.3 0.00042 9.1E-09 73.7 6.3 67 488-564 46-112 (329)
73 TIGR03242 arg_catab_astE succi 97.2 0.00033 7.1E-09 74.2 4.6 67 488-564 40-106 (319)
74 cd06909 M14_ASPA Aspartoacylas 97.2 0.00055 1.2E-08 71.3 5.9 63 491-564 2-64 (282)
75 cd03855 M14_ASTE Peptidase M14 97.1 0.00086 1.9E-08 71.1 6.3 67 488-564 41-107 (322)
76 cd06910 M14_ASTE_ASPA_like_7 A 97.0 0.0008 1.7E-08 69.6 4.9 64 490-564 1-69 (272)
77 COG3608 Predicted deacylase [G 97.0 0.0012 2.5E-08 69.9 5.8 67 488-563 47-114 (331)
78 cd06227 Peptidase_M14-like_2 A 90.1 0.24 5.3E-06 51.5 3.2 131 29-174 96-257 (272)
79 COG2988 Succinylglutamate desu 89.3 0.13 2.9E-06 53.4 0.6 64 491-564 45-108 (324)
80 cd06237 M14_Nna1_like_3 A bact 88.9 0.089 1.9E-06 53.8 -1.0 146 14-178 73-228 (244)
81 PF00246 Peptidase_M14: Zinc c 88.9 0.019 4.1E-07 59.1 -6.0 151 11-176 65-259 (279)
82 cd03860 M14_CP_A-B_like The Pe 34.1 19 0.00042 37.6 1.2 25 152-176 240-264 (294)
83 smart00631 Zn_pept Zn_pept. 31.8 19 0.00042 37.2 0.7 25 152-176 237-261 (277)
84 cd06248 M14_CPA_CPB_like Pepti 26.1 44 0.00096 35.3 2.2 28 149-176 247-274 (304)
85 PF04135 Nop10p: Nucleolar RNA 24.0 32 0.00069 27.2 0.5 16 168-183 13-30 (53)
86 PF09892 DUF2119: Uncharacteri 21.5 1.4E+02 0.003 29.7 4.5 47 490-547 7-53 (193)
No 1
>KOG3641|consensus
Probab=100.00 E-value=8.1e-69 Score=571.01 Aligned_cols=306 Identities=34% Similarity=0.591 Sum_probs=274.6
Q ss_pred CCCCccCCc---ceeEEEeeecccccccccccCcccc-----cccccccccccccccccccccccccccCCCCCC---Cc
Q psy17594 230 NLPSYIGET---FRTVRLTVEKFNVIESRVLTGEQHL-----WQELSYSMELSTLISIKQLSSILDFITGSESSG---GG 298 (579)
Q Consensus 230 k~P~~~g~~---~~~vv~~~~~~~~~~~rv~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~f~s~f~~~~---~~ 298 (579)
..| ++||. +++| ..+++++.+++||..+.++. ++.++|+++-+. .++ .+.+|.|+|+||+|| |+
T Consensus 191 ~~P-~~~H~pi~~k~p-i~e~~~~~q~~ki~~~l~~~~~sd~~~~vv~~ld~~~--~~p-~~~~l~f~s~fesgnLr~Vi 265 (650)
T KOG3641|consen 191 LKP-AVLHPPIYFKAP-IVESRLNSQSSKISSCLPPAPVSDLEKAVVYDLDAHS--TIP-HNAELWFQSEFESGNLRSVI 265 (650)
T ss_pred ece-ecccCCCccCcc-ceeccccccccchhhhcCCCChhhhhhhhcccccCCc--CCC-CCcceeeecccccCCcceeE
Confidence 556 67766 7788 66788899999999888554 899999998842 243 678899999999998 79
Q ss_pred cccCceEEEEeccCCCCCCCCCCcceEEEEEEEecCcceEEEEEEEeccccccccccCCcceEEEecC-CcccEEccCCC
Q psy17594 299 EGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHST-RNQWERIREKP 377 (579)
Q Consensus 299 ~~~~~ey~L~lrpD~~~~~~~~g~~qWFyF~V~~~~~~~~~~f~I~N~~K~~sly~~Gm~P~~~s~~~-~~~W~R~~~~~ 377 (579)
+++..||||+++||+++ +.|.|||||.|+| .+++++.|||+|+.|+.++|++||+|.++|... ..+|.|.++++
T Consensus 266 qv~~~eydL~~~pDtn~----~~~~~wfYfevsg-~~s~ry~FnivN~sk~~tqfe~gmqp~mys~nea~~~~~r~~~~i 340 (650)
T KOG3641|consen 266 QVPQQEYDLFLAPDTNP----NEYGVWFYFEVSG-RASVRYCFNIVNFSKSSTQFENGMQPKMYSLNEAHNDFRRFSEKI 340 (650)
T ss_pred EecccccceeecCCCCC----cccceEEEEEecC-CcCcceEEEEEeeccchhHHhcccCcceeehhhhhccccccCcce
Confidence 99999999999999987 4789999999999 899999999999999999999999999999754 46788899999
Q ss_pred eeEec---------CCEEEEEEEEEeccCCceEEEEccCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecC
Q psy17594 378 TYSYD---------GSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLE 448 (579)
Q Consensus 378 ~y~~~---------~~~~tLsF~~~f~~~~d~vyfA~~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~e 448 (579)
||+.+ +++|++.|.++|+|. |+|||||+|||||+.|+.+|+.|+...+ ..+|++..+||.|+.
T Consensus 341 cYyrn~~~~~skkgk~yysi~f~v~fphs-d~cyfaYhypyTy~~l~~hLn~les~~~-------~~~yfr~dVl~~tl~ 412 (650)
T KOG3641|consen 341 CYYRNRRDNQSKKGKGYYSIYFAVGFPHS-DTCYFAYHYPYTYSQLQCHLNGLESPKN-------PAFYFRYDVLLFTLV 412 (650)
T ss_pred eeeecccccccccCceEEEEEEEecCCcc-ceEEEeeccCccHHHHHhhhhcccCCCC-------cCcccchheeeeeec
Confidence 99642 368999999999998 9999999999999999999999986532 357999999999999
Q ss_pred CeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHh
Q psy17594 449 GRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLR 528 (579)
Q Consensus 449 GR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr 528 (579)
||+|+++||+... ...+|+|||+|||||||+++||||+|+|++|++ +++.|+.||
T Consensus 413 g~~~~l~tI~~ae------------------------~~~~~~IfLSaRVHpgeTnsSwvmkGilefl~s-~~p~aq~LR 467 (650)
T KOG3641|consen 413 GRAMALATIDMAE------------------------CAPRPVIFLSARVHPGETNSSWVMKGILEFLVS-NSPLAQGLR 467 (650)
T ss_pred CCccceEEeeHhh------------------------cCCcceEEEecccCCCCCcHHHHHHHHHHHhhc-CCcHHHhhh
Confidence 9999999999421 136899999999999999999999999999998 688999999
Q ss_pred cccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594 529 KMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 529 ~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~ 578 (579)
+.|+|||+||||||||++|||||+++|.||||.|.+|++.+||+|||+|+
T Consensus 468 e~~vFKI~PMLNPDGV~~GnyRCSL~G~DLNR~w~tps~~shPsi~~~k~ 517 (650)
T KOG3641|consen 468 ESYVFKIVPMLNPDGVIVGNYRCSLMGLDLNRMWSTPSPASHPSIYAVKQ 517 (650)
T ss_pred hheeEecccccCCCceecccceeccccchhhhhcCCCCcccchhHHhHHH
Confidence 99999999999999999999999999999999999999999999999996
No 2
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=100.00 E-value=8.4e-40 Score=337.32 Aligned_cols=206 Identities=38% Similarity=0.645 Sum_probs=183.7
Q ss_pred ccceeeeeecc-CCCCcccccceEEEeee--CCCcc-------CcccCCCceeeeccccccCccceeEEEEEEecccccc
Q psy17594 12 LSSILDFITGS-ESSGGGEGIDYEFNVWP--KADCA-------GTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVK 81 (579)
Q Consensus 12 ~~~~~d~~~~~-~~~~~~~~~~~ef~i~~--~PD~~-------~~~~~~~~r~wf~f~~~~~~~~~~~~~~ivn~~k~~~ 81 (579)
+-++|++|++. ++.++.++++++|.|.| |||++ +..|-|+||.|-.+.+..+|..+.++-.|-.+.+...
T Consensus 87 ~~~ll~~Ll~~~d~~a~~L~~~~~~~IvPmlNPDGv~~g~~R~~~~G~DLNR~y~~p~~~~~Pei~aik~~i~~~~~~~~ 166 (304)
T cd06236 87 FNGFLKFLLNKDDPRAALLRRRFVFKLIPMLNPDGVYRGHYRTDTRGVNLNRVYLNPDPELHPSIYAIKKLILYLHEESR 166 (304)
T ss_pred HHHHHHHHHhCCCHHHHHHHhCCeEEEEEeEcccccccCccccCCcCCCcCcCCCCCCcccCHHHHHHHHHHHHhhccCC
Confidence 45789999976 77788999999999997 99988 4568899999999999999998888877766654444
Q ss_pred cccccccceEeecCC--ceEEeCCCCCChhhhHHHHHHHHHHhhcCCCccccCcccchhhhhhcccCCCccccCCcceeh
Q psy17594 82 MFSQGMAPVYRSHST--RIFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGLSREGAGRVAV 159 (579)
Q Consensus 82 l~~~g~~p~v~s~~~--~~F~yGn~~~~~~~~~~~~~fp~l~s~n~~~f~~~~c~F~~~~m~~~d~~~~~~kegsgRv~~ 159 (579)
+ -|+.++|+|+. |+|||||..++...++++++||+||++|+|+|+|.+|+|+++||++|||++++||||||||++
T Consensus 167 i---~~yiDlH~hs~~~~~F~Yg~~~~~~~~~~~~~~fp~l~~~~~~~F~~~~c~F~~~~m~~~d~~~~~~k~gt~Rv~~ 243 (304)
T cd06236 167 L---AFYIDLHAHASKRGCFIYGNALEDESQQVENLLFPKLISLNSPHFDFDGCNFSEKNMYAKDKRDGLSKEGSGRVAV 243 (304)
T ss_pred c---eEEEEecccccccceEeeecCCChHHHHHHHHHHHHHHHhcCcccccccceeccccccccccccccCcCCcchhhH
Confidence 4 77889999986 999999999887789999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcceeeEEEeeccccccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhhhhhh
Q psy17594 160 GKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENAQDITLA 222 (579)
Q Consensus 160 ~~~~gi~~syTlE~~y~~Gr~~n~~~p~~~d~~~~~~~~~~~~~ytp~~~e~vG~~~~~i~l~ 222 (579)
|+.+||++||||||+|++++.+|.++++++|. .......+++||+++|++||++++.++||
T Consensus 244 ~~~~~i~~syTlE~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~t~~~~~~~G~~~~~~~ld 304 (304)
T cd06236 244 YKATGIIHSYTLECNYNTGRIVNTVPAASGDT--PPPPNGFPPKYTITDFEQVGRAIAVAALD 304 (304)
T ss_pred hhhhCCceEEEEEEecccccccccccccccCC--cccccCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999882 22345788999999999999999988764
No 3
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=100.00 E-value=2e-37 Score=319.76 Aligned_cols=146 Identities=65% Similarity=1.121 Sum_probs=133.9
Q ss_pred CCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHH
Q psy17594 433 PDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGV 512 (579)
Q Consensus 433 ~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~ 512 (579)
.+.+|+++++||+|+|||+|++||||++.+..+++|.+..+++++...+++....+||+|||+||||||||+||++|+|+
T Consensus 11 ~~~iy~~~~~Lg~S~eGR~i~lLtITs~~~~~~~~~~~~~~l~~~~~~~~~~~~~~K~~V~I~ariHp~E~~~s~~~~~l 90 (304)
T cd06236 11 DPDIYYHREVLCYSLEGRRIDLLTITSCHGKLEQREPRLEGLFPDRKTPRPHFFFGKPVVFISSRVHPGETPSSFVFNGF 90 (304)
T ss_pred CCceEEEEEEeEECCCCCceEEEEEecCcccccccccccccccccccccccccccCCcEEEEECCcCCCCchHHHHHHHH
Confidence 35689999999999999999999999988776666667778887655555555678999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594 513 INFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 513 l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~ 578 (579)
|++|++.+|+.++.||++++|+||||+|||||++||||+++.|+||||+|.+|++.+||||+|+|+
T Consensus 91 l~~Ll~~~d~~a~~L~~~~~~~IvPmlNPDGv~~g~~R~~~~G~DLNR~y~~p~~~~~Pei~aik~ 156 (304)
T cd06236 91 LKFLLNKDDPRAALLRRRFVFKLIPMLNPDGVYRGHYRTDTRGVNLNRVYLNPDPELHPSIYAIKK 156 (304)
T ss_pred HHHHHhCCCHHHHHHHhCCeEEEEEeEcccccccCccccCCcCCCcCcCCCCCCcccCHHHHHHHH
Confidence 999998779999999999999999999999999999999999999999999999999999999986
No 4
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=100.00 E-value=1.7e-37 Score=315.44 Aligned_cols=130 Identities=42% Similarity=0.788 Sum_probs=116.1
Q ss_pred CcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHH
Q psy17594 434 DDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVI 513 (579)
Q Consensus 434 ~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l 513 (579)
..+|+++++||+|++||+|++||||+.++.... ......++||+|||+|||||||++|||+|+|+|
T Consensus 11 ~~~y~~~~~Lc~Tl~G~~v~lltIt~~~~~~~~--------------~~~~~~~~kp~I~I~ARvHPgEt~~Swi~~g~l 76 (278)
T cd06906 11 QQIYFRQQVLCETLGGNSCPLLTITAMPESNYY--------------EHICQFRNRPYIFLSARVHPGETNASWVMKGTL 76 (278)
T ss_pred cccEEeeecceeccCCCceeEEEEeCCCccccc--------------cccccccCCcEEEEEcccCCCcchHHHHHHHHH
Confidence 457999999999999999999999985422110 011223589999999999999999999999999
Q ss_pred HHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594 514 NFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 514 ~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~ 578 (579)
++|++ +|+.|+.||++|+|+||||+|||||++||+|||+.|+||||+|..|++..||+||++|+
T Consensus 77 ~~L~~-~d~~a~~Lr~~~~f~IvPmlNPDGvv~Gn~Rc~~~G~DLNR~w~~p~~~~~P~i~~~k~ 140 (278)
T cd06906 77 EFLMS-SSPTAQSLRESYIFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQSPNPELHPTIYHTKG 140 (278)
T ss_pred HHHhC-CCHHHHHHHHhCcEEEEeeecCccceecccccCCCCCCCCCCCCCCCcccChHHHHHHH
Confidence 99997 68999999999999999999999999999999999999999999999999999999985
No 5
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=100.00 E-value=5.2e-37 Score=312.36 Aligned_cols=144 Identities=39% Similarity=0.629 Sum_probs=135.0
Q ss_pred ceEEEEccCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCC
Q psy17594 399 SFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPED 478 (579)
Q Consensus 399 d~vyfA~~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~ 478 (579)
|+|||||++||||+++.++|+.+++.. .++.++||+|.+||+|++|+|+++.
T Consensus 1 ~~~~~ay~~Pys~~~~~~~l~~~~~~~-----------~v~~~~iG~S~eGR~i~~l~I~~~~----------------- 52 (263)
T cd06234 1 DSVYFAYFAPYSYERHLALIARAQGAP-----------DVRLEVLGQTVQGRDIDLLTFGEPG----------------- 52 (263)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHhcCC-----------CeEEEEEEEcCCCCeEEEEEEccCC-----------------
Confidence 689999999999999999999987631 3799999999999999999998732
Q ss_pred ccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCC
Q psy17594 479 ATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNL 558 (579)
Q Consensus 479 ~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DL 558 (579)
++||.|||+||+||+|++|+|+|+++|+.|++.+|+.++.||++++|+||||+||||+++|++|+|+.|+||
T Consensus 53 --------~~k~~V~i~a~iH~~E~~g~~~~~~ll~~L~~~~d~~~~~ll~~~~~~IvP~~NPDG~~~g~~R~n~~GvDL 124 (263)
T cd06234 53 --------PGKKKLWIIARQHPGETMAEWFMEGLLERLLDPDDAVARALLEKAVFYVVPNMNPDGSARGHLRTNAAGANL 124 (263)
T ss_pred --------CCCCEEEEECCCCCCcHHHHHHHHHHHHHHhhcCCHHHHHHHhcCEEEEEeeecchhhhhcCCccCCCCCCC
Confidence 368999999999999999999999999999987889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCChhhhhhhc
Q psy17594 559 NRYYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 559 NR~w~~P~~~~~Pei~a~K~ 578 (579)
||+|..|++..+||++++++
T Consensus 125 NRnw~~p~~~s~PEt~av~~ 144 (263)
T cd06234 125 NREWAEPSAERSPEVFAVRQ 144 (263)
T ss_pred CCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999985
No 6
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=100.00 E-value=5.5e-36 Score=303.12 Aligned_cols=124 Identities=43% Similarity=0.733 Sum_probs=113.5
Q ss_pred cceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHH
Q psy17594 435 DIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVIN 514 (579)
Q Consensus 435 ~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~ 514 (579)
..|+++++||+|++||+|++||||++.+... ..++||+|||+|||||||++|||+|+|+|+
T Consensus 11 ~~~~~~~~lg~S~eGR~i~~LtIt~~~~~~~-------------------~~~~K~~I~I~ariHp~E~~~s~~~~gll~ 71 (261)
T cd06907 11 SKFCKLRVLCRTLAGNTVYLLTITSPSSNPS-------------------LAAAKKAVVLTARVHPGETNASWMMKGFLD 71 (261)
T ss_pred CCceEEEEEEECCCCCeeeEEEEcCCCcccc-------------------ccCCCCEEEEECCcCCChHHHHHHHHHHHH
Confidence 3489999999999999999999997542100 014799999999999999999999999999
Q ss_pred HHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594 515 FLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 515 ~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~ 578 (579)
+|++ +|+.++.||++|+|+||||+|||||++||||+++.|+||||+|.+|++.+||||||+|+
T Consensus 72 ~L~~-~~~~a~~Lr~~~~f~IvPmlNPDGv~~G~~R~~~~G~DLNR~w~~p~~~~~P~i~~~k~ 134 (261)
T cd06907 72 FLTS-NSPDAQLLRDTFIFKIVPMLNPDGVIVGNYRCSLAGRDLNRNYKTPLKDSFPTIWYTKN 134 (261)
T ss_pred HHhc-CCHHHHHHHhcCCEEEEEeecCccccccCCcCCCcCCCCCcCCCCCCcccCchHHHHHH
Confidence 9997 78999999999999999999999999999999999999999999999999999999986
No 7
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=100.00 E-value=1.2e-35 Score=301.87 Aligned_cols=131 Identities=47% Similarity=0.830 Sum_probs=118.5
Q ss_pred HHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECC
Q psy17594 418 LFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSAR 497 (579)
Q Consensus 418 L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsAR 497 (579)
|+.|++++|+ ++++++||+|++||+|++|+||++.+.. ..++||+|||+||
T Consensus 1 l~~l~~~~p~---------~~~~~~iG~S~eGR~i~~l~It~~~~~~--------------------~~~~k~~I~i~ar 51 (261)
T cd06908 1 LDALEKRSLD---------YFRREQLGQSVQKRRLDLLTIDSPDNLR--------------------EDSEKKVIFITAR 51 (261)
T ss_pred ChHHHhhCCC---------cEEEEEeEEcCCCCeeEEEEEcCCCccc--------------------cCCCCcEEEEECC
Confidence 4567777764 5899999999999999999999754210 0147999999999
Q ss_pred cCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhh
Q psy17594 498 VHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAAR 577 (579)
Q Consensus 498 vHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K 577 (579)
||||||+|+|+|+|+|++|++ +|+.++.||++++|+||||+|||||++||+|+++.|+||||+|..|++.+||||+|+|
T Consensus 52 iHp~E~~~s~~~~~li~~L~~-~~~~~~~L~~~~~~~IvP~~NPDGv~~gn~R~~~~G~DLNR~w~~p~~~~~PEv~av~ 130 (261)
T cd06908 52 VHPGESPSSYVCQGLIDFLVS-NHPIAKVLREHLVFKIVPMLNPDGVFLGNYRCSLMGHDLNRHWHDPSPWAHPTLHAVK 130 (261)
T ss_pred cCCCChHHHHHHHHHHHHHhh-CCHHHHHHHHhCcEEEEeeecCcceeecCCcCcCcCcCCCCCCCCCCcccChHHHHHH
Confidence 999999999999999999998 5899999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy17594 578 S 578 (579)
Q Consensus 578 ~ 578 (579)
+
T Consensus 131 ~ 131 (261)
T cd06908 131 N 131 (261)
T ss_pred H
Confidence 5
No 8
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=99.98 E-value=2.9e-32 Score=277.58 Aligned_cols=123 Identities=49% Similarity=0.848 Sum_probs=112.1
Q ss_pred ceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHH
Q psy17594 436 IYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINF 515 (579)
Q Consensus 436 ~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~ 515 (579)
.++++++||+|.+||+|++|+||++.+.. ...++||.|||+|||||||++|+++|+++|++
T Consensus 11 ~~~~~~~iG~S~eGr~i~~l~i~~~~~~~-------------------~~~~~k~~V~i~a~iH~~E~~~s~~~~~ll~~ 71 (258)
T cd06235 11 QYLKRKILCTTLGGLPVPLLTITSPSSKS-------------------IPIKKKKVIVITARQHPGETNSSFVMQGFIDF 71 (258)
T ss_pred CceEEEEeEEcCCCCeeeEEEEeCCcccc-------------------cccCCCcEEEEECCcCCCChHHHHHHHHHHHH
Confidence 46899999999999999999999754210 01147999999999999999999999999999
Q ss_pred HHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594 516 LLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 516 Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~ 578 (579)
|++ +++.++.||++++|+||||+|||||++|++|+|+.|+||||+|.+|++.+|||++++|+
T Consensus 72 Ll~-~~~~~~~Ll~~~~~~iiPm~NPDG~~~g~~R~n~~GvDLNR~w~~p~~~~~PE~~~~~~ 133 (258)
T cd06235 72 LLS-DSPEAQYLRENFIFKIIPMLNPDGVIHGNYRCSLSGIDLNRQWKNPDKKLHPEIYHVKQ 133 (258)
T ss_pred Hhc-CCHHHHHHHhccEEEEEccccccceeecCCcCCCCCCCcCCCCCCCCcccCcHHHHHHH
Confidence 997 56789999999999999999999999999999999999999999999999999999986
No 9
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=99.98 E-value=3e-32 Score=278.90 Aligned_cols=139 Identities=40% Similarity=0.670 Sum_probs=127.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCcc
Q psy17594 401 TYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDAT 480 (579)
Q Consensus 401 vyfA~~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~ 480 (579)
.++|+..||+|.+...+++.++.. .+++.+||+|.+||+|.+++++..
T Consensus 3 ~~~~~~~~~~y~~~~~l~~sl~~~------------~v~l~~IG~s~egr~i~~~~~~~~-------------------- 50 (269)
T cd03856 3 SLQSAHANQIYDRRLALCESLQGN------------SCDLLTITSPPEGNDIKYEHLCSF-------------------- 50 (269)
T ss_pred chhhhcCCcCHHHHHHHHHHhcCC------------ceeEEEeccCCCCccccceeccCC--------------------
Confidence 578999999999999999988621 378999999999999999887631
Q ss_pred CCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCC
Q psy17594 481 CRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNR 560 (579)
Q Consensus 481 ~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR 560 (579)
.+||+|||+||+||+||+|+++|+++|++|++ +++.++.||++++|+||||+||||+++|+||+|+.|+||||
T Consensus 51 ------~~k~~i~i~a~iH~~E~~~~~~~~~li~~Ll~-~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~G~DLNR 123 (269)
T cd03856 51 ------ANKKYIFLIARVHPGETNASWVMKGFLEFLLS-DNPTAQSLRESFVFKIVPMLNPDGVIRGNYRCSLSGVDLNR 123 (269)
T ss_pred ------CCCcEEEEEcCcCCCchHHHHHHHHHHHHHHh-CCHHHHHHHhcCeEEEEeeeCCccccccCCcCCCCCCCcCC
Confidence 37999999999999999999999999999998 45669999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhhhhhc
Q psy17594 561 YYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 561 ~w~~P~~~~~Pei~a~K~ 578 (579)
+|..|++..|||++++|+
T Consensus 124 ~~~~p~~~~~pE~~~~~~ 141 (269)
T cd03856 124 QWQNPSPDLHPEIYLVKG 141 (269)
T ss_pred CCCCCCCCCCCCHHHHHH
Confidence 999999999999999985
No 10
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=99.97 E-value=1.3e-32 Score=278.65 Aligned_cols=182 Identities=24% Similarity=0.317 Sum_probs=157.7
Q ss_pred cceeeeeeccCCCCcccccceEEEeee--CCCcc-------CcccCCCceeeeccccccCccceeEEEEEEecccccccc
Q psy17594 13 SSILDFITGSESSGGGEGIDYEFNVWP--KADCA-------GTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMF 83 (579)
Q Consensus 13 ~~~~d~~~~~~~~~~~~~~~~ef~i~~--~PD~~-------~~~~~~~~r~wf~f~~~~~~~~~~~~~~ivn~~k~~~l~ 83 (579)
-|+||++++..+.++.++++++|.|+| |||++ +..|.|+||.|-.+..+.+|.-+.+|..|..+.+..++
T Consensus 67 ~gll~~L~~~~~~a~~Lr~~~~f~IvPmlNPDGv~~G~~R~~~~G~DLNR~w~~p~~~~~P~i~~~k~li~~l~~~~~i- 145 (261)
T cd06907 67 KGFLDFLTSNSPDAQLLRDTFIFKIVPMLNPDGVIVGNYRCSLAGRDLNRNYKTPLKDSFPTIWYTKNMVKRLLEEREV- 145 (261)
T ss_pred HHHHHHHhcCCHHHHHHHhcCCEEEEEeecCccccccCCcCCCcCCCCCcCCCCCCcccCchHHHHHHHHHHHHhcCCe-
Confidence 468999999999999999999999997 99987 56689999999999988999988877776666655444
Q ss_pred cccccceEeecCC--ceEEeCCCC-CChhhhHHHHHHHHHHhhcCC-CccccCcccchhhhhhcccCCCccccCCcceeh
Q psy17594 84 SQGMAPVYRSHST--RIFMYGNHF-QNTVDKVECMLLAKIMSINSP-HFHFHACNFTERIMYLRDRRDGLSREGAGRVAV 159 (579)
Q Consensus 84 ~~g~~p~v~s~~~--~~F~yGn~~-~~~~~~~~~~~fp~l~s~n~~-~f~~~~c~F~~~~m~~~d~~~~~~kegsgRv~~ 159 (579)
.|+.++|+|+. ++|+|||.. ++...++++++||+|||+|+| .|+|.+|+|++ .++|||||||++
T Consensus 146 --~~ylDlHghs~~~~~F~yG~~~~~~~~~~~~~~~fp~l~~~~~~~~F~~~~c~F~~----------~~~k~~t~Rv~~ 213 (261)
T cd06907 146 --ILYCDLHGHSRKNNVFMYGCENKLNPEKWLHERVFPLMMSKNAPDKFSFRSCKFKV----------QKSKEGTGRVVM 213 (261)
T ss_pred --EEEEEeccchhccceEeecCCCCCCHHHHHHHHHHHHHHHhcCccceecccCCccC----------CCCCCCCceEEh
Confidence 67888999986 899999976 455678999999999999999 59999999996 489999999999
Q ss_pred hhhcCcceeeEEEeeccccccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhhhhhhhh
Q psy17594 160 GKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENAQDITLALW 224 (579)
Q Consensus 160 ~~~~gi~~syTlE~~y~~Gr~~n~~~p~~~d~~~~~~~~~~~~~ytp~~~e~vG~~~~~i~l~~~ 224 (579)
|+++++ +|||||++|+ |...+ + ..+.+||+++|++||+++|.++|+||
T Consensus 214 ~~~~~~-~syTlE~s~~-G~~~~-------~--------~~~~~f~~~~~~~~G~~~~~~lldy~ 261 (261)
T cd06907 214 WRLGIL-NSFTMEATFC-GSTLG-------R--------RKGTHFTTSDLESMGYHFCDTLLDYC 261 (261)
T ss_pred hhhcCc-eEEEEeeEcc-ccccC-------C--------cCCcccCHHHHHHHHHHHHHHHHhhC
Confidence 999777 9999999999 76651 1 23479999999999999999999987
No 11
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=99.96 E-value=3.6e-31 Score=269.32 Aligned_cols=182 Identities=26% Similarity=0.311 Sum_probs=151.9
Q ss_pred ccceeeeeeccCCCCcccccceEEEeee--CCCcc-------CcccCCCceeeeccccccCccceeEEEEEEecccc-cc
Q psy17594 12 LSSILDFITGSESSGGGEGIDYEFNVWP--KADCA-------GTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQ-VK 81 (579)
Q Consensus 12 ~~~~~d~~~~~~~~~~~~~~~~ef~i~~--~PD~~-------~~~~~~~~r~wf~f~~~~~~~~~~~~~~ivn~~k~-~~ 81 (579)
+.|+++||++.++.++.++++++|.|+| |||++ +..|-|+||.|-.+++..+|..+.+|..+-.|.+. ..
T Consensus 72 ~~g~l~~L~~~d~~a~~Lr~~~~f~IvPmlNPDGvv~Gn~Rc~~~G~DLNR~w~~p~~~~~P~i~~~k~l~~~l~~~~~~ 151 (278)
T cd06906 72 MKGTLEFLMSSSPTAQSLRESYIFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQSPNPELHPTIYHTKGLLQYLAAIKRS 151 (278)
T ss_pred HHHHHHHHhCCCHHHHHHHHhCcEEEEeeecCccceecccccCCCCCCCCCCCCCCCcccChHHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999997 99987 45799999999999998888877766555444432 22
Q ss_pred cccccccceEeecCC--ceEEeCCCCCCh-------------hhhHHHHHHHHHHhhcCCCccccCcccchhhhhhcccC
Q psy17594 82 MFSQGMAPVYRSHST--RIFMYGNHFQNT-------------VDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRR 146 (579)
Q Consensus 82 l~~~g~~p~v~s~~~--~~F~yGn~~~~~-------------~~~~~~~~fp~l~s~n~~~f~~~~c~F~~~~m~~~d~~ 146 (579)
+ -|+.++|+|++ ++|||||..++. .+...+++||+||++|+|.|+|.+|+|+.
T Consensus 152 ~---~~yiDlHghs~~~~~F~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~fP~ll~~~~~~Fs~~~C~F~~--------- 219 (278)
T cd06906 152 P---LVYCDYHGHSRKKNVFMYGCSIKETVWHTNVNSASCDLVEDSGYRTLPKILSHIAPAFSMSSCSFVV--------- 219 (278)
T ss_pred c---eEEEeecccccccceEEeccCCCcchhhhhccccccccchhhhHHHHHHHHHhcCCccchhhCCccC---------
Confidence 2 26789999986 999999987532 12356799999999999999999999996
Q ss_pred CCccccCCcceehhhhcCcceeeEEEeeccccccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhhhhhh
Q psy17594 147 DGLSREGAGRVAVGKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENAQDITLA 222 (579)
Q Consensus 147 ~~~~kegsgRv~~~~~~gi~~syTlE~~y~~Gr~~n~~~p~~~d~~~~~~~~~~~~~ytp~~~e~vG~~~~~i~l~ 222 (579)
+++|||||||++|+.+||.+|||||++|+ |... + .....+|++.+||+||+++|.++|+
T Consensus 220 -~k~K~gTaRv~~~~~~~i~~syTlE~Sf~-G~~~-------g--------~~~g~~f~~~~~~~~G~~~c~~l~~ 278 (278)
T cd06906 220 -EKSKESTARVVVWREIGVQRSYTMESTLC-GCDQ-------G--------KYKGLQIGTKELEEMGAKFCVGLLR 278 (278)
T ss_pred -CCCCCCCeeEehhhhcCCceEEEEEEEec-cccc-------c--------CcCceecCHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999 6544 1 1244899999999999999999863
No 12
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.95 E-value=2.1e-27 Score=240.03 Aligned_cols=134 Identities=28% Similarity=0.473 Sum_probs=119.4
Q ss_pred EccCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCC
Q psy17594 404 AFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRP 483 (579)
Q Consensus 404 A~~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~ 483 (579)
|=..=|+++++++||++|++. + .++.++||+|.+||+|++|+|+++
T Consensus 3 ~~~~~~~~~~i~~~l~~L~~~-~----------~v~~~~iG~S~eGR~i~~l~ig~~----------------------- 48 (244)
T cd06237 3 AAQELIDNQDVKDWVDSLIKQ-P----------FVELELLGLSTQGRPLKALERGNP----------------------- 48 (244)
T ss_pred cceeeCCHHHHHHHHHHHhcC-C----------CeEEEEeeEcCCCCEEEEEEecCC-----------------------
Confidence 333447899999999999754 2 379999999999999999999753
Q ss_pred CCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCC
Q psy17594 484 KKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYT 563 (579)
Q Consensus 484 ~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~ 563 (579)
++||.|+|.|++||+|+.|+++++.|++.|++ +++.++.|+++++|+||||+||||++.++||+|+.|+||||||.
T Consensus 49 ---~~k~~v~i~~~iH~~E~~g~~~~~~~~~~l~~-~~~~~~~ll~~~~i~ivP~~NPDG~~~~~wR~N~~GvDLNRnw~ 124 (244)
T cd06237 49 ---DSKEWIVVISRQHPPEVTGALAMKAFIETLLS-DSELAKKFRAKYNVLLVPNMNPDGVDLGHWRHNANGIDLNRDWS 124 (244)
T ss_pred ---CCCceEEEEcCcCCCcHHHHHHHHHHHHHHHh-CCHHHHHHHHhCEEEEEEeeCcchhhcCCccCCCCCcCCCCCCC
Confidence 25899999999999999999999999999997 56778999999999999999999999999999999999999998
Q ss_pred CCCCCCChhhhhhhc
Q psy17594 564 NPSPVYHPSVFAARS 578 (579)
Q Consensus 564 ~P~~~~~Pei~a~K~ 578 (579)
. .++||+.|+++
T Consensus 125 ~---~sepEt~a~~~ 136 (244)
T cd06237 125 N---FNQPETRAIRD 136 (244)
T ss_pred C---CCCHHHHHHHH
Confidence 4 56899999874
No 13
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=99.93 E-value=6e-26 Score=235.50 Aligned_cols=137 Identities=22% Similarity=0.342 Sum_probs=121.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q psy17594 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTD 488 (579)
Q Consensus 409 YTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~ 488 (579)
++|+++.+||+.|++++|+. ++++.||+|.|||+|.+|+|+.... .+
T Consensus 3 ~~~~ei~~~l~~L~~~~p~~---------v~l~~iG~S~EGR~i~~l~i~~~~~------------------------~~ 49 (300)
T cd03872 3 HPLEEIESWMFYMNKTHSDL---------VHLFSIGKSYEGRSLYVLKLGKRTR------------------------SY 49 (300)
T ss_pred CCHHHHHHHHHHHHHHCCCc---------eEEEEeeecCCCCceEEEEEecCCC------------------------CC
Confidence 79999999999999999864 6899999999999999999986321 36
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC-----C--------CCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH-----Y--------RTDT 553 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-----~--------R~n~ 553 (579)
||.|||.|++|++||.|+.++..+|+.|+.. +|+..+.|+++++|+||||+||||+++.+ | |.+|
T Consensus 50 k~~i~i~~giHarEwi~~~~~~~~i~~Ll~~~~~d~~~~~lL~~~~~~ivP~vNPDGy~ys~~~~r~wrknR~~~~~~~c 129 (300)
T cd03872 50 KKAVWIDCGIHAREWIGPAFCQWFVKEALNSYQTDPAMKKMLNQLYFYVMPVFNVDGYHYSWTNDRFWRKTRSKNSRYQC 129 (300)
T ss_pred CCeEEEecccccccccCHHHHHHHHHHHHHhccCChHHHHHHhhCeEEEEeeecCCcceeeeccchhhhccCCCCCCCCc
Confidence 8999999999999999999999999999975 57889999999999999999999998742 2 3458
Q ss_pred CCCCCCCCCCC------------------CCCCCChhhhhhhc
Q psy17594 554 RGVNLNRYYTN------------------PSPVYHPSVFAARS 578 (579)
Q Consensus 554 ~G~DLNR~w~~------------------P~~~~~Pei~a~K~ 578 (579)
.|+||||||.. |.+.+.||+.|+++
T Consensus 130 ~GVDLNRNf~~~w~~~g~s~~Pcs~~Y~G~~pfSEpEt~al~~ 172 (300)
T cd03872 130 RGVDANRNWKVKWCDEGASLHPCDDTYCGPFPESEPEVKAVAQ 172 (300)
T ss_pred cccccccccCcccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Confidence 99999999982 56789999999974
No 14
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=99.93 E-value=7.1e-26 Score=241.96 Aligned_cols=140 Identities=24% Similarity=0.327 Sum_probs=123.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q psy17594 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTD 488 (579)
Q Consensus 409 YTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~ 488 (579)
|+|+++.++|++|++++|+. ++++.||+|.+||+|++|+|++..+.. ..+
T Consensus 2 ~~y~ei~~~l~~l~~~~p~~---------~~l~~iG~S~eGR~i~~l~is~~~~~~---------------------~~~ 51 (372)
T cd03868 2 HHYEELTDLLHSLAKKYPNI---------ARLHSIGRSVEGRELWVLRITDNVNRR---------------------EPG 51 (372)
T ss_pred CCHHHHHHHHHHHHHHCCCc---------EEEEeccccCCCceEEEEEEecCCCCC---------------------CCC
Confidence 79999999999999999863 689999999999999999999753211 136
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC----------CCCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH----------YRTDTRGV 556 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn----------~R~n~~G~ 556 (579)
||.|+|+|++|++||.|+.++..|++.|+.. .|++.+.|+++++|+||||+||||+++.+ +|.|+.|+
T Consensus 52 kp~v~~~~~iH~~E~ig~~~~l~l~~~L~~~y~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~~~~~~~~R~n~~Gv 131 (372)
T cd03868 52 EPMFKYVGNMHGDETVGRQVLIYLAQYLLENYGGDERVTELVNTTDIYLMPSMNPDGFERSQEGDCSCGGYGGRENANNV 131 (372)
T ss_pred CCeEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCHHHHHHHhCCEEEEEeeeCCchHHhhcccCccccCCCccCCCCCc
Confidence 9999999999999999999999999999974 57889999999999999999999998642 58899999
Q ss_pred CCCCCCCC-------CCCCCChhhhhhhc
Q psy17594 557 NLNRYYTN-------PSPVYHPSVFAARS 578 (579)
Q Consensus 557 DLNR~w~~-------P~~~~~Pei~a~K~ 578 (579)
||||||.. |.+..+||+.|++.
T Consensus 132 DLNRnf~~~~~~~~~~~~~sepEt~av~~ 160 (372)
T cd03868 132 DLNRNFPDQFEGKLQRLSERQPETVAMMK 160 (372)
T ss_pred cCCCCCCcccCCcCCCCCCCCHHHHHHHH
Confidence 99999964 36789999999874
No 15
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=99.93 E-value=1.3e-25 Score=240.42 Aligned_cols=129 Identities=17% Similarity=0.255 Sum_probs=113.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCC
Q psy17594 405 FTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPK 484 (579)
Q Consensus 405 ~~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~ 484 (579)
|.| ++|++|.++|++|++++|+. +++..||+|.|||+|.+|+|++..+..
T Consensus 3 f~y-h~y~em~~~L~~la~~yP~i---------~~l~sIGkS~EGR~L~~l~Is~~~~~~-------------------- 52 (405)
T cd03869 3 FKH-HNYKDMRQLMKVVNEMCPNI---------TRIYNIGKSYQGLKLYAMEISDNPGEH-------------------- 52 (405)
T ss_pred Ccc-CCHHHHHHHHHHHHHHCCCc---------eEEEEeEECcCCceEEEEEEecCCccc--------------------
Confidence 455 89999999999999999864 589999999999999999999753211
Q ss_pred CCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHh---CCChHHHHHhcccEEEEEeeeCCCeeecCC-----------CC
Q psy17594 485 KFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT---RDDPIASLLRKMYLFKIIPMLNPDGVARGH-----------YR 550 (579)
Q Consensus 485 ~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~---~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-----------~R 550 (579)
..+||.|++.|++|++||.|+.++..++++|++ ..|++++.|+++++|+|+||+||||+++.. .|
T Consensus 53 -~~~kP~v~~~g~iHgrE~ig~~~~l~li~~L~~~y~~~d~~v~~Ll~~~~i~IvP~~NPDG~e~s~~~~~~~~~Wrk~R 131 (405)
T cd03869 53 -ELGEPEFRYVAGMHGNEVLGRELLLLLMQFLCQEYLAGNPRVVHLVEETRIHLLPSMNPDGYEKAYEAGSELGGWALGR 131 (405)
T ss_pred -cCCCCeEEEEcccCCCcHHHHHHHHHHHHHHHHhhhcCCHHHHHHHhcCeEEEEeeeCCchhhhhhhcCccccccccCc
Confidence 036899999999999999999999999999986 358999999999999999999999997631 37
Q ss_pred CCCCCCCCCCCCCC
Q psy17594 551 TDTRGVNLNRYYTN 564 (579)
Q Consensus 551 ~n~~G~DLNR~w~~ 564 (579)
.|+.|+||||||.+
T Consensus 132 ~na~GVDLNRNFp~ 145 (405)
T cd03869 132 WTEEGIDINHNFPD 145 (405)
T ss_pred cCCCCccccCCCcc
Confidence 89999999999984
No 16
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=99.93 E-value=1.5e-25 Score=232.50 Aligned_cols=138 Identities=23% Similarity=0.309 Sum_probs=120.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q psy17594 408 PYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFT 487 (579)
Q Consensus 408 PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~ 487 (579)
.+||+++.+||++|++++|+. ++++.||+|.|||+|.+|+|+...+ +
T Consensus 4 Y~~~~ei~~~l~~L~~~~p~~---------v~l~~iG~S~EgR~I~~l~i~~~~~------------------------~ 50 (298)
T cd06247 4 YHPMDEIYNWMDQIKEKYSEL---------VSQHYLGCTYELRPMYYLKIGWPSD------------------------K 50 (298)
T ss_pred cCCHHHHHHHHHHHHHHCCCc---------EEEEeceECcCCceEEEEEeecCCC------------------------C
Confidence 489999999999999999863 6889999999999999999986321 3
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC-----CC--------CC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH-----YR--------TD 552 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-----~R--------~n 552 (579)
.|++|||+|++|++||.|+.+++.+|+.|++. +|+.++.|+++++|+||||+||||+++.+ || .+
T Consensus 51 ~k~~i~i~~giHarEwi~~~~~l~~i~~Ll~~y~~d~~~~~ll~~~~i~ivP~~NPDGy~ys~~~~r~wRknr~~~~~~~ 130 (298)
T cd06247 51 PKKIIWMDCGIHAREWISPAFCQWFVKEILQNYKTDPILRKVLKNVDFYVLPVLNIDGYIYTWTTDRLWRKNRSPHNNGT 130 (298)
T ss_pred CCcEEEEeccccccccccHHHHHHHHHHHHHHhccCHHHHHHHhcCeEEEEeeecCCcceEEecccceecccCCCCCCCC
Confidence 58899999999999999999999999999974 57889999999999999999999999642 33 36
Q ss_pred CCCCCCCCCCCC------------------CCCCCChhhhhhhc
Q psy17594 553 TRGVNLNRYYTN------------------PSPVYHPSVFAARS 578 (579)
Q Consensus 553 ~~G~DLNR~w~~------------------P~~~~~Pei~a~K~ 578 (579)
|.|+||||||.. |.+.+.||+.|++.
T Consensus 131 c~GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~pfSEpEt~ai~~ 174 (298)
T cd06247 131 CYGVDLNRNFNSQWCSIGASRNCRSNIFCGTGPESEPETKAVAR 174 (298)
T ss_pred ccccccccCCCCccccCCCCCCCCCCCcCCCCCCCcHHHHHHHH
Confidence 789999999973 45789999999975
No 17
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=99.93 E-value=1.1e-25 Score=234.51 Aligned_cols=140 Identities=29% Similarity=0.350 Sum_probs=121.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q psy17594 408 PYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFT 487 (579)
Q Consensus 408 PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~ 487 (579)
.++|+++.+||+.|++++|+. +++++||+|.|||+|++|+|++..+. ..
T Consensus 4 Y~~~~ei~~~l~~la~~~p~~---------v~~~~iG~S~eGR~i~~l~I~~~~~~----------------------~~ 52 (304)
T cd06248 4 YHPLEDHLQWLRDLQAAFPNN---------SELFTIGKSYEGRTILGLHIWGSGGE----------------------KG 52 (304)
T ss_pred cCCHHHHHHHHHHHHHHCCCc---------eEEeceEECCCCCeEEEEEEecCCCC----------------------CC
Confidence 479999999999999999863 68899999999999999999975321 13
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC-----CC--------CC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH-----YR--------TD 552 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-----~R--------~n 552 (579)
+||.|||+|++|++||.|+.++..+|+.|++. .|+.++.|+++++|+||||+||||++++. || .+
T Consensus 53 ~k~~v~i~~giHarE~~~~~~~l~~~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~wRknr~~~~~~~ 132 (304)
T cd06248 53 SKPAIVIHGTVHAREWISTMTVEYLAYQLLTGYGSDATVTALLDKFDFYIIPVVNPDGFVYTQTSDRLWRKNRQPTSGSS 132 (304)
T ss_pred CCcEEEEECCcCcCccccHHHHHHHHHHHHHhhccCHHHHHHHHhCcEEEEeeecCchhhhhccchhhhhhcCCCCCCCC
Confidence 68999999999999999999999999999974 47899999999999999999999998653 33 24
Q ss_pred CCCCCCCCCCC----------C--------CCCCCChhhhhhhc
Q psy17594 553 TRGVNLNRYYT----------N--------PSPVYHPSVFAARS 578 (579)
Q Consensus 553 ~~G~DLNR~w~----------~--------P~~~~~Pei~a~K~ 578 (579)
+.|+||||||. + |.+.++||+.|+++
T Consensus 133 ~~GVDLNRNf~~~w~~~g~s~~p~s~~Y~G~~~~sEpEt~av~~ 176 (304)
T cd06248 133 CVGTDLNRNWPYKWDGGGSSTNPCSETYRGESPGDAPEAKALAA 176 (304)
T ss_pred ceeecCCCCCCCcccCCCCCCCCCCCCcCCCCCCccHHHHHHHH
Confidence 78999999997 2 34789999999974
No 18
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=99.93 E-value=1.6e-25 Score=238.10 Aligned_cols=140 Identities=22% Similarity=0.282 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q psy17594 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTD 488 (579)
Q Consensus 409 YTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~ 488 (579)
++|+++.+||++|++++|+. ++++.||+|.|||+|++|+|++..+.. .++
T Consensus 3 h~y~ei~~~l~~l~~~~p~i---------~~l~~IG~S~eGR~l~~l~Is~~~~~~---------------------~~~ 52 (363)
T cd06245 3 HHYKELSEFLRGLTLNYPHI---------TNLTSLGQSVEFRPILSLEISNKPNNS---------------------EPE 52 (363)
T ss_pred CCHHHHHHHHHHHHHHCCCc---------eEEEEeeecCCCceEEEEEecCCCCCC---------------------CCC
Confidence 79999999999999999863 588999999999999999999754211 136
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC--------CCCCCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH--------YRTDTRGVNL 558 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn--------~R~n~~G~DL 558 (579)
||.|++.|++|++||.|..+++.++++|+.. .|+.++.|+++++|+|||++||||++++. .|.||.|+||
T Consensus 53 kp~v~~~~giHg~E~ig~e~~l~l~~~L~~~y~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~~~~~~~r~na~GvDL 132 (363)
T cd06245 53 EPKIRFVAGIHGNAPVGTELLLALAEFLCMNYGKNPAVTKLIDRTRIVIVPSLNPDGREKAQEKQCTSKEGHTNAHGKDL 132 (363)
T ss_pred CCEEEEECCccCCcHHHHHHHHHHHHHHHHHccCCHHHHHHHhCCEEEEEeccCCchHHHeecCCCcccCCCCCcccccC
Confidence 9999999999999999999999999999874 68899999999999999999999999765 3899999999
Q ss_pred CCCCCC----CCCCCChhhhhhhc
Q psy17594 559 NRYYTN----PSPVYHPSVFAARS 578 (579)
Q Consensus 559 NR~w~~----P~~~~~Pei~a~K~ 578 (579)
||||.. +.+..+||+.|++.
T Consensus 133 NRNf~~~~~g~~~~sepEt~Av~~ 156 (363)
T cd06245 133 DTDFTSNASNMSADVQPETKAIID 156 (363)
T ss_pred CCCCCcccCCCCCCCcHHHHHHHH
Confidence 999973 56789999999864
No 19
>smart00631 Zn_pept Zn_pept.
Probab=99.93 E-value=1.9e-25 Score=229.66 Aligned_cols=138 Identities=33% Similarity=0.476 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q psy17594 408 PYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFT 487 (579)
Q Consensus 408 PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~ 487 (579)
.|||+++.++|++|++++|+. ++.+.||+|.+||+|++++|++... +
T Consensus 1 y~ty~e~~~~l~~l~~~~~~~---------v~~~~iG~S~~Gr~i~~~~i~~~~~------------------------~ 47 (277)
T smart00631 1 YHSYEEIEAWLKELAARYPDL---------VRLVSIGKSVEGRPIWVLKISDGGS------------------------H 47 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCc---------eEEEeceecCCCCceEEEEEeCCCC------------------------C
Confidence 379999999999999998753 6899999999999999999997420 3
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC-----CCC------CCC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH-----YRT------DTR 554 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-----~R~------n~~ 554 (579)
+||.|||+|++||+|+.|+.++..+|+.|+.. +|+.++.|+++++|+||||+||||+.++. ||+ ++.
T Consensus 48 ~k~~v~i~a~~Hg~E~~g~~~~~~~i~~L~~~~~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~wr~~r~~~~~~~ 127 (277)
T smart00631 48 NKPAIFIDAGIHAREWIGPATALYLINQLLENYGRDPRITKLLDKTDIYIVPVLNPDGYEYTHTGDRLWRKNRSPNSNCR 127 (277)
T ss_pred CCcEEEEECCccccccccHHHHHHHHHHHHHhcccCHHHHHHHHcCcEEEEEeecCchhhheecccccccCCCCCCCCCc
Confidence 58999999999999999999999999999984 47889999999999999999999998653 344 799
Q ss_pred CCCCCCCCCC---------------CCCCCChhhhhhhc
Q psy17594 555 GVNLNRYYTN---------------PSPVYHPSVFAARS 578 (579)
Q Consensus 555 G~DLNR~w~~---------------P~~~~~Pei~a~K~ 578 (579)
|+||||||.. |.+.+.||+.|++.
T Consensus 128 GvDLNRnf~~~w~~~~~p~~~~y~G~~~~sepEt~ai~~ 166 (277)
T smart00631 128 GVDLNRNFPFHWGKTGNPCSETYAGPSPFSEPETKAVRD 166 (277)
T ss_pred CcccCCCCCCCCCCCCCCCCCCcCCCCCCCcHHHHHHHH
Confidence 9999999983 45689999999975
No 20
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=99.93 E-value=1.9e-25 Score=231.57 Aligned_cols=137 Identities=31% Similarity=0.449 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q psy17594 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTD 488 (579)
Q Consensus 409 YTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~ 488 (579)
+||+++.++|++|++++|+ .+++++||+|.+||+|++|+|++.. ...
T Consensus 2 ~ty~ei~~~l~~l~~~~p~---------~~~~~~iG~S~egr~i~~l~i~~~~------------------------~~~ 48 (294)
T cd03860 2 HTYDEIYAWLDELAQKYPD---------LVTVETIGRSYEGRPIKGVKISNGG------------------------RSN 48 (294)
T ss_pred CCHHHHHHHHHHHHHHCCC---------ceEEEeeeeCCCCCeEEEEEEecCC------------------------CCC
Confidence 7999999999999999875 3789999999999999999999743 036
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCC-----CC--------CCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGH-----YR--------TDTRG 555 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-----~R--------~n~~G 555 (579)
||.|+|+|++|++|+.|+.++..+|+.|+...++.++.|+++++|+||||+||||+..+. || .++.|
T Consensus 49 k~~v~i~~~~Hg~E~~g~~~~~~~~~~L~~~~~~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~wrknr~~~~~~~~~G 128 (294)
T cd03860 49 KPAIFIDAGIHAREWISPATALYIINQLVESYDPEVTDLLDNYDWYILPVANPDGYEYTHTTDRLWRKNRSPNSGGGCVG 128 (294)
T ss_pred CcEEEEECCcCcCccccHHHHHHHHHHHHHccCHHHHHHHHcCeEEEEeeecCCchhhhccccchhcccCCCCCCCCcee
Confidence 899999999999999999999999999998666789999999999999999999998542 23 34789
Q ss_pred CCCCCCCCC------------------CCCCCChhhhhhhc
Q psy17594 556 VNLNRYYTN------------------PSPVYHPSVFAARS 578 (579)
Q Consensus 556 ~DLNR~w~~------------------P~~~~~Pei~a~K~ 578 (579)
+||||||.. |.+.++||+.|++.
T Consensus 129 vDLNRnf~~~w~~~~~~~~p~~~~y~G~~~~sepEt~al~~ 169 (294)
T cd03860 129 VDLNRNFDYHWGGGGASSDPCSETYAGPSAFSEPETRAVRD 169 (294)
T ss_pred eccCCCCCCCCccCCCCCCCCCCCccCCCCCchHHHHHHHH
Confidence 999999963 45678999999985
No 21
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=99.93 E-value=2.6e-25 Score=230.79 Aligned_cols=139 Identities=27% Similarity=0.366 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q psy17594 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTD 488 (579)
Q Consensus 409 YTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~ 488 (579)
+||+++.++|++|++++|+. ++++.||+|.+||+|.+|+|++..+. ...
T Consensus 5 ~~y~ei~~~l~~l~~~~p~~---------v~~~~iG~S~eGR~i~~l~i~~~~~~----------------------~~~ 53 (295)
T cd03859 5 HNYLEMVDELNAAAAAYPNL---------TKVKSIGKSYEGRDIIAVKISDNVAT----------------------DEN 53 (295)
T ss_pred CCHHHHHHHHHHHHHHCCCc---------eEEEeeeecCCCCeEEEEEEecCCCC----------------------CCC
Confidence 69999999999999999763 78999999999999999999975321 136
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC-------CC---------
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH-------YR--------- 550 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-------~R--------- 550 (579)
||.|||+|++|++|+.|..+++.+|+.|+.. .|+.++.|+++++|+||||+||||+++.. ||
T Consensus 54 kp~i~i~~~iH~~E~~g~~~~l~~i~~L~~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~~~wrkn~~~~~~~ 133 (295)
T cd03859 54 KPEVLYTSTHHAREWLSLEMAIYLMHYLLENYGKDPRIQNLVDNRELWFVPVVNPDGYEYDETTGGYRSWRKNRRDNSGD 133 (295)
T ss_pred CCEEEEECCcCccchhhHHHHHHHHHHHHHhhccCHHHHHHHhcCeEEEEeeeCCCcceEEeeccCccceeccCCCCCCC
Confidence 9999999999999999999999999999974 47889999999999999999999998532 23
Q ss_pred -CCCCCCCCCCCCC--------------------CCCCCCChhhhhhhc
Q psy17594 551 -TDTRGVNLNRYYT--------------------NPSPVYHPSVFAARS 578 (579)
Q Consensus 551 -~n~~G~DLNR~w~--------------------~P~~~~~Pei~a~K~ 578 (579)
.++.|+||||||. .|.+.++||+.|++.
T Consensus 134 ~~~~~GvDLNRNf~~~w~~~~~g~s~~p~~~~y~G~~p~sepEt~av~~ 182 (295)
T cd03859 134 ISSSDGVDLNRNYGYKWGYDSGGSSNDPSSETYRGPSAFSEPETQAIRD 182 (295)
T ss_pred cCcceeecCCCCCCcccCCCCCCCCCCCCCCCccCCCCCchHHHHHHHH
Confidence 4678999999995 135778999999975
No 22
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=99.93 E-value=6.7e-26 Score=232.37 Aligned_cols=135 Identities=33% Similarity=0.423 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEE
Q psy17594 414 LQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVF 493 (579)
Q Consensus 414 l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~ 493 (579)
|.++|++|++++|+. ++++.||+|.+||+|++|+|++..+. ...+||.|+
T Consensus 1 i~~~l~~l~~~~p~~---------v~~~~iG~S~~Gr~i~~~~i~~~~~~---------------------~~~~k~~v~ 50 (279)
T PF00246_consen 1 INAYLDALAARYPDI---------VRLESIGKSYEGRPIYALTIGSNSNG---------------------SDPGKPTVL 50 (279)
T ss_dssp HHHHHHHHHHHSTTT---------EEEEEEEE-TTS-EEEEEEESSSTTT---------------------TSTTSEEEE
T ss_pred CHHHHHHHHHHCCCc---------EEEEEeeECCCCCeEEEEEeeccccc---------------------ccccccceE
Confidence 578999999998763 68999999999999999999975321 114799999
Q ss_pred EECCcCCCCchHHHHHHHHHHHHHhC-CChHHHHHhcccEEEEEeeeCCCeeecCCC--------CCCCCCCCCCCCCCC
Q psy17594 494 LSARVHPGETPSSFVMNGVINFLLTR-DDPIASLLRKMYLFKIIPMLNPDGVARGHY--------RTDTRGVNLNRYYTN 564 (579)
Q Consensus 494 IsARvHpgE~~gS~v~~g~l~~Ll~~-~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~--------R~n~~G~DLNR~w~~ 564 (579)
|+|++||+|+.|+++++++|+.|++. +|+.++.||++++|+||||+||||+.++++ |+|+.|+||||+|..
T Consensus 51 i~~~~Hg~E~~g~~~~l~~~~~L~~~~~~~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~w~~~R~n~~GvDlNRnf~~ 130 (279)
T PF00246_consen 51 IIAGIHGNEWIGSEALLYLIEELLSGYDDPEVKELLDNVVIYIIPMVNPDGYEYGTSGDRGWRKNRSNANGVDLNRNFPY 130 (279)
T ss_dssp EEE-SSTT-THHHHHHHHHHHHHHHHTTSHHHHHHHHHEEEEEES-SSHHHHHHHHHT-TTCCSTSSBTTS--GGGSSSS
T ss_pred EEecccccccCchHHHHHHHHHhhccccchhhhhhcccceEEEEeeecccceeeeeecccccccccccccccccccccCc
Confidence 99999999999999999999999985 689999999999999999999999998875 999999999999965
Q ss_pred C------------------CCCCChhhhhhhc
Q psy17594 565 P------------------SPVYHPSVFAARS 578 (579)
Q Consensus 565 P------------------~~~~~Pei~a~K~ 578 (579)
. .+.+.||+.|+++
T Consensus 131 ~w~~~~~~~~~~~~~y~g~~~~sepEt~al~~ 162 (279)
T PF00246_consen 131 QWNEEGSSSNPCSETYRGPAPFSEPETRALRN 162 (279)
T ss_dssp STTSSSSBSSTTSTTB--SSTTTSHHHHHHHH
T ss_pred ccccccccCCCCCcccCCCcchhhhHHHHHHH
Confidence 5 3567999999875
No 23
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=99.93 E-value=2.2e-25 Score=238.35 Aligned_cols=140 Identities=23% Similarity=0.349 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q psy17594 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTD 488 (579)
Q Consensus 409 YTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~ 488 (579)
+||+++.++|++|++++|+. ++++.||+|.+||+|.+|+|++..+.. .++
T Consensus 2 ~~y~ei~~~l~~l~~~~p~~---------~~~~~iG~S~eGR~i~~l~i~~~~~~~---------------------~~~ 51 (374)
T cd03858 2 HNYAELESFLKEVAANYPNI---------TRLYSIGKSVQGRDLWVLEISDNPGVH---------------------EPG 51 (374)
T ss_pred CCHHHHHHHHHHHHHhCCCc---------eEEEEcccCCCCCEEEEEEEecCCCCC---------------------CCC
Confidence 69999999999999999863 689999999999999999999754210 136
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhC---CChHHHHHhcccEEEEEeeeCCCeeecC--------CCCCCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTR---DDPIASLLRKMYLFKIIPMLNPDGVARG--------HYRTDTRGVN 557 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~---~d~~a~~Lr~~~vf~IVPmlNPDGv~~G--------n~R~n~~G~D 557 (579)
||.|||+|++|++|+.|+.+++.||+.|+.. .|+..+.|+++++|+||||+||||+++. ..|+|+.|+|
T Consensus 52 kp~v~i~agiH~~E~~g~~~~~~l~~~L~~~~~~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~~w~~~R~n~~GvD 131 (374)
T cd03858 52 EPEFKYVGNMHGNEVVGRELLLRLAQYLCENYGAGDPRITRLVDNTRIHIMPSMNPDGYEKAAEGDCGGLTGRYNANGVD 131 (374)
T ss_pred CceEEEeccccCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHhCCEEEEEcccCCchhhhhcccCCcccccCCCCccee
Confidence 9999999999999999999999999999975 6889999999999999999999999874 4689999999
Q ss_pred CCCCCCC---------CCCCCChhhhhhhc
Q psy17594 558 LNRYYTN---------PSPVYHPSVFAARS 578 (579)
Q Consensus 558 LNR~w~~---------P~~~~~Pei~a~K~ 578 (579)
|||||.. |.+.++||+.|+++
T Consensus 132 LNRnf~~~~~~~~~~G~~~~sepEt~al~~ 161 (374)
T cd03858 132 LNRNFPDLFFTNYRSSDNGPRQPETKAVMN 161 (374)
T ss_pred cccCCCcccccccccCCCcccCHHHHHHHH
Confidence 9999975 36779999999875
No 24
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=99.93 E-value=2.4e-25 Score=237.41 Aligned_cols=143 Identities=22% Similarity=0.328 Sum_probs=123.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCC
Q psy17594 405 FTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPK 484 (579)
Q Consensus 405 ~~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~ 484 (579)
|.| ++|++|.+||++|++++|+. +++..||+|.|||+|++|+|++..+..
T Consensus 4 f~~-h~y~ei~~~l~~l~~~~P~i---------~~l~~IG~S~eGR~I~~l~Is~~~~~~-------------------- 53 (375)
T cd03863 4 FRH-HHFSDMEIFLRRYANEYPSI---------TRLYSVGKSVELRELYVMEISDNPGIH-------------------- 53 (375)
T ss_pred Ccc-CCHHHHHHHHHHHHHHCCCc---------EEEEEcccCCccceEEEEEEecCCCcc--------------------
Confidence 344 89999999999999999863 589999999999999999999743211
Q ss_pred CCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC--------CCCCCC
Q psy17594 485 KFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH--------YRTDTR 554 (579)
Q Consensus 485 ~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn--------~R~n~~ 554 (579)
..+||.|++.|++|++||.|+.++..|++.|++. .|++.+.|+++++|+||||+||||+++.. .|.|+.
T Consensus 54 -~~~kp~v~~~g~iHg~E~ig~~~~l~li~~L~~~y~~d~~v~~ll~~~~i~IvP~~NPDG~e~~~~~~~~~~~~R~n~~ 132 (375)
T cd03863 54 -EPGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSN 132 (375)
T ss_pred -cCCCCeEEEEccccCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHhCCEEEEEeccCCchHHheecCCcccccccccCC
Confidence 1379999999999999999999999999999974 58899999999999999999999998764 489999
Q ss_pred CCCCCCCCCC----CCCCCChhhhhhhc
Q psy17594 555 GVNLNRYYTN----PSPVYHPSVFAARS 578 (579)
Q Consensus 555 G~DLNR~w~~----P~~~~~Pei~a~K~ 578 (579)
|+||||||.. .+...+||+.|++.
T Consensus 133 GVDLNRNfp~~~~~~~~~~EpEt~Av~~ 160 (375)
T cd03863 133 NYDLNRNFPDQFFQVTDPPQPETLAVMS 160 (375)
T ss_pred CcccccCCccccccCCCCCcHHHHHHHH
Confidence 9999999964 23456899999874
No 25
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=99.92 E-value=4.7e-25 Score=229.22 Aligned_cols=138 Identities=19% Similarity=0.196 Sum_probs=120.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCC
Q psy17594 407 YPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKF 486 (579)
Q Consensus 407 ~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~ 486 (579)
-.+||+++.++|++|++++|+. ++++.||+|.|||+|.+|+|++..
T Consensus 5 ~Y~~~~ei~~~l~~L~~~~p~~---------v~~~~iG~S~eGR~I~~l~is~~~------------------------- 50 (301)
T cd03870 5 TYHTLDEIYDFMDLLVAEHPNL---------VSKLQIGRSYEGRPIYVLKFSTGG------------------------- 50 (301)
T ss_pred ccCCHHHHHHHHHHHHHHCCCc---------eEEEecccCCCCCeEEEEEEecCC-------------------------
Confidence 3479999999999999999863 688999999999999999998632
Q ss_pred CCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC-----CC--------C
Q psy17594 487 TDKKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH-----YR--------T 551 (579)
Q Consensus 487 ~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-----~R--------~ 551 (579)
..||.|||+|++|++||.|+.++..+++.|+.. .|+.++.|+++++|+||||+||||+++.+ || .
T Consensus 51 ~~kp~v~i~~giHarE~i~~~~~l~~~~~L~~~~~~d~~~~~lLd~~~i~ivP~~NPDG~~~s~~~~r~wrknr~~~~~~ 130 (301)
T cd03870 51 SNRPAIWIDAGIHSREWITQATGVWFAKKITEDYGQDPSFTAILDSMDIFLEIVTNPDGYVFTHSQNRLWRKTRSVTSGS 130 (301)
T ss_pred CCCceEEEeccccccchhhHHHHHHHHHHHHHhcccCHHHHHHHHhCcEEEEeeecCchhhheecccceeecCCCCCCCC
Confidence 268999999999999999999999999999974 57889999999999999999999998653 33 3
Q ss_pred CCCCCCCCCCCCC------------------CCCCCChhhhhhhc
Q psy17594 552 DTRGVNLNRYYTN------------------PSPVYHPSVFAARS 578 (579)
Q Consensus 552 n~~G~DLNR~w~~------------------P~~~~~Pei~a~K~ 578 (579)
+|.||||||||.. |.+.+.||+.|++.
T Consensus 131 ~~~GVDLNRNf~~~w~~~g~s~~p~~~~Y~G~~pfSEpEt~av~~ 175 (301)
T cd03870 131 LCVGVDPNRNWDAGFGGAGASSNPCSETYHGPYANSEVEVKSIVD 175 (301)
T ss_pred CccccccccCCCcccCcCCCCCCCCccccCCCCCCccHHHHHHHH
Confidence 6899999999962 45788999999974
No 26
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=99.92 E-value=8.9e-25 Score=227.09 Aligned_cols=139 Identities=22% Similarity=0.267 Sum_probs=120.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCC
Q psy17594 407 YPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKF 486 (579)
Q Consensus 407 ~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~ 486 (579)
-.++|+++.+||++|++++|+. +++..||+|.|||+|.+|+|++..+
T Consensus 4 ~Y~~~~ei~~~l~~l~~~~p~~---------v~~~~iG~S~egR~I~~l~is~~~~------------------------ 50 (300)
T cd06246 4 QYHSLNEIYSWIEFITERHSDM---------LEKIHIGSSFEKRPLYVLKVSGKEQ------------------------ 50 (300)
T ss_pred ccCCHHHHHHHHHHHHHHCCCc---------EEEEecccCCCCCeEEEEEEeCCCC------------------------
Confidence 4589999999999999999863 6899999999999999999986320
Q ss_pred CCCcEEEEECCcCCCCchHHHHHHHHHHHHHh--CCChHHHHHhcccEEEEEeeeCCCeeecC-----CCC--------C
Q psy17594 487 TDKKVVFLSARVHPGETPSSFVMNGVINFLLT--RDDPIASLLRKMYLFKIIPMLNPDGVARG-----HYR--------T 551 (579)
Q Consensus 487 ~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~--~~d~~a~~Lr~~~vf~IVPmlNPDGv~~G-----n~R--------~ 551 (579)
+.||.|||.|++|++||.|+.+++.+|+.|+. ..|+..+.|+++++|+||||+||||+.+. .|| .
T Consensus 51 ~~k~~v~i~~giHarE~i~~~~~l~~i~~Ll~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~r~wRknr~~~~~~ 130 (300)
T cd06246 51 TAKNAIWIDCGIHAREWISPAFCLWFVGHATQFYGIDGQMTNLLRHMDFYIMPVMNVDGYDYTWKKNRMWRKNRSFYANS 130 (300)
T ss_pred CCCCeEEEecccCccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHhCeEEEEEeecCCceeEEEeccceeecCCCCCCCC
Confidence 36899999999999999999999999999986 36788999999999999999999999853 244 3
Q ss_pred CCCCCCCCCCCCC------------------CCCCCChhhhhhhc
Q psy17594 552 DTRGVNLNRYYTN------------------PSPVYHPSVFAARS 578 (579)
Q Consensus 552 n~~G~DLNR~w~~------------------P~~~~~Pei~a~K~ 578 (579)
+|.|+||||||.. |.+.+.||+.|+++
T Consensus 131 ~~~GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~p~SEpEt~av~~ 175 (300)
T cd06246 131 HCIGTDLNRNFDAKWCCEGASSSSCSETYCGPYPESEPEVKAVAS 175 (300)
T ss_pred CccCcccccccccccCCCCCCCCCCCCCcCCCCCCccHHHHHHHH
Confidence 4899999999982 45788999999864
No 27
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=99.92 E-value=7.9e-25 Score=233.86 Aligned_cols=140 Identities=20% Similarity=0.306 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q psy17594 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTD 488 (579)
Q Consensus 409 YTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~ 488 (579)
++|+++.+||++|++++|+. ++++.||+|.|||+|++|+|++..... ..+
T Consensus 6 ~~~~ei~~~l~~l~~~~p~i---------~~l~~IG~S~eGR~i~~l~ig~~~~~~---------------------~~~ 55 (376)
T cd03866 6 HNTEQMEAYLKDVNKNYPSI---------THLHSIGQSVEGRELWVLVLGRFPREH---------------------RIG 55 (376)
T ss_pred CCHHHHHHHHHHHHHhCCCc---------EEEEEeeccCCCceEEEEEeccCCccc---------------------cCC
Confidence 69999999999999999863 578999999999999999999743110 136
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHh--CCChHHHHHhcccEEEEEeeeCCCeeecC-------CCCCCCCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLT--RDDPIASLLRKMYLFKIIPMLNPDGVARG-------HYRTDTRGVNLN 559 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~--~~d~~a~~Lr~~~vf~IVPmlNPDGv~~G-------n~R~n~~G~DLN 559 (579)
||.|++.|++|++|+.|+.+++.+++.|+. .+|+..+.|+++++|+||||+||||+++. .+|.|+.|+|||
T Consensus 56 ~P~v~~~~~iHg~E~ig~~~~l~l~~~L~~~y~~d~~i~~lL~~~~i~ivP~~NPDG~e~~~~~~~~~~~R~N~~GvDLN 135 (376)
T cd03866 56 IPEFKYVANMHGNEVVGRELLLHLIDYLVTSYGSDPVITRLLNSTRIHIMPSMNPDGFEASKPDCYYSVGRYNKNGYDLN 135 (376)
T ss_pred CCeEEEEcccCCCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCEEEEEeccCCchhhhcccccccccccccCCCcccC
Confidence 899999999999999999999999999997 36889999999999999999999999986 269999999999
Q ss_pred CCCCCC----CCCCChhhhhhhc
Q psy17594 560 RYYTNP----SPVYHPSVFAARS 578 (579)
Q Consensus 560 R~w~~P----~~~~~Pei~a~K~ 578 (579)
|||... ...++||+.|+++
T Consensus 136 Rnf~~~w~~~~~~sepEt~al~~ 158 (376)
T cd03866 136 RNFPDAFEENNEQRQPETRAVME 158 (376)
T ss_pred cCchhhhccCCCCCcHHHHHHHH
Confidence 999832 2348999999874
No 28
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=99.92 E-value=1.1e-24 Score=233.33 Aligned_cols=127 Identities=21% Similarity=0.299 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q psy17594 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTD 488 (579)
Q Consensus 409 YTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~ 488 (579)
++|++|.++|++|++++|+. +++.+||+|.|||+|++|+|++..+.. .++
T Consensus 6 h~y~e~~~~L~~l~~~~p~i---------~~l~~IG~S~eGR~I~~l~Is~~~~~~---------------------~~~ 55 (402)
T cd03865 6 HRYPELREALVSVWLQCPSI---------SRIYTVGRSFEGRELLVIEMSDNPGEH---------------------EPG 55 (402)
T ss_pred CCHHHHHHHHHHHHHHCCCc---------eEEEecccccCCCeEEEEEeecCCCCC---------------------CCC
Confidence 79999999999999999864 689999999999999999999743211 137
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhC---CChHHHHHhcccEEEEEeeeCCCeeecC-----------CCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTR---DDPIASLLRKMYLFKIIPMLNPDGVARG-----------HYRTDTR 554 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~---~d~~a~~Lr~~~vf~IVPmlNPDGv~~G-----------n~R~n~~ 554 (579)
||.|++.|++|++||.|+.++..++++|++. .|++++.|+++++|+|||++||||+++. ..|.|+.
T Consensus 56 kP~v~i~g~iHg~E~ig~~~~l~l~~~L~~~y~~~d~~v~~LLd~~~i~IvP~~NPDG~e~~~~~~~~~~~w~~~R~Na~ 135 (402)
T cd03865 56 EPEFKYIGNMHGNEAVGRELLIYLAQYLCNEYQKGNETIINLIHSTRIHIMPSLNPDGFEKAASQPGELKDWFVGRSNAQ 135 (402)
T ss_pred CCEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCCHHHHHHHhcCEEEEEeeeCCchHHhhhhcCccccchhhhccccc
Confidence 9999999999999999999999999999974 4789999999999999999999999853 1489999
Q ss_pred CCCCCCCCCCC
Q psy17594 555 GVNLNRYYTNP 565 (579)
Q Consensus 555 G~DLNR~w~~P 565 (579)
|+||||||.+.
T Consensus 136 GvDLNRNFp~~ 146 (402)
T cd03865 136 GIDLNRNFPDL 146 (402)
T ss_pred CcccCCCCCcc
Confidence 99999999864
No 29
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=99.92 E-value=1.2e-24 Score=233.25 Aligned_cols=140 Identities=21% Similarity=0.301 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q psy17594 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTD 488 (579)
Q Consensus 409 YTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~ 488 (579)
++|++|.++|++|++++|+. +++..||+|.+||+|++|+|++..+.. ...
T Consensus 2 h~y~em~~~L~~l~~~yP~i---------~~l~sIG~SveGR~i~~l~is~~~~~~---------------------~~~ 51 (392)
T cd03864 2 HRYDDLVRALYAVQNECPYI---------TRIYSIGRSVEGRHLYVLEFSDNPGIH---------------------EPL 51 (392)
T ss_pred CCHHHHHHHHHHHHHHCCCe---------EEEEEeeeccCCceEEEEEecCCCccc---------------------cCC
Confidence 68999999999999999863 588999999999999999999743211 136
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhC---CChHHHHHhcccEEEEEeeeCCCeeecC-----------CCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTR---DDPIASLLRKMYLFKIIPMLNPDGVARG-----------HYRTDTR 554 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~---~d~~a~~Lr~~~vf~IVPmlNPDGv~~G-----------n~R~n~~ 554 (579)
||.|++.|++|++|+.|..++..++++|++. .|++++.|+++++++||||+||||+++. ..|.|++
T Consensus 52 kp~v~~~g~iHg~E~ig~e~ll~l~~~L~~~y~~~d~~v~~lL~~~~i~ivP~~NPDG~e~~~~~~~~~~~~~~~R~Na~ 131 (392)
T cd03864 52 EPEFKYVGNMHGNEVLGRELLIQLSEFLCEEYRNGNERITRLIQDTRIHILPSMNPDGYEVAARQGPEFNGYLVGRNNAN 131 (392)
T ss_pred CCEEEEEcccCCCcHHHHHHHHHHHHHHHHhcccCCHHHHHHHhcCeEEEEeeeCCchHHhhhccCCCcCcccccccccc
Confidence 8999999999999999999999999999964 4889999999999999999999999752 3699999
Q ss_pred CCCCCCCCCCCC-----------------------CCCChhhhhhhc
Q psy17594 555 GVNLNRYYTNPS-----------------------PVYHPSVFAARS 578 (579)
Q Consensus 555 G~DLNR~w~~P~-----------------------~~~~Pei~a~K~ 578 (579)
|+||||||.+.. +..+||+.|+.+
T Consensus 132 GVDLNRNFp~~~~~~~~~~~~~g~~~~~P~~~~~~~~~epET~Av~~ 178 (392)
T cd03864 132 GVDLNRNFPDLNTLMYYNEKYGGPNHHLPLPDNWKSQVEPETLAVIQ 178 (392)
T ss_pred CcccccCCCcccccchhhhccCCccccCCCccccccccCHHHHHHHH
Confidence 999999998531 457899999864
No 30
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=99.92 E-value=2e-24 Score=224.33 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=120.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCC
Q psy17594 406 TYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKK 485 (579)
Q Consensus 406 ~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~ 485 (579)
.-.+||+++.+||++|++++|+. ++++.||+|.|||+|.+|+|++..
T Consensus 4 ~~Y~~~~ei~~~l~~la~~~p~~---------v~~~~IG~S~eGR~i~~l~i~~~~------------------------ 50 (300)
T cd03871 4 EKYNNWETIEAWTEQVASENPDL---------ISRSQIGTTFEGRPIYLLKVGKPG------------------------ 50 (300)
T ss_pred cccCCHHHHHHHHHHHHHHCCCc---------eEEEEeeeCCCCCeeEEEEEccCC------------------------
Confidence 34589999999999999999864 688999999999999999998631
Q ss_pred CCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC-----CC--------
Q psy17594 486 FTDKKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH-----YR-------- 550 (579)
Q Consensus 486 ~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-----~R-------- 550 (579)
.+||.|||+|++|++||.|+.+++.+|+.|+.. .|+.++.|++++.|+||||+||||+++.. ||
T Consensus 51 -~~kp~v~i~~giHarE~i~~~~~l~~i~~l~~~y~~d~~~~~lL~~~~~~ivP~~NPDG~~~s~~~~r~wrknr~~~~~ 129 (300)
T cd03871 51 -VNKPAIFMDCGFHAREWISPAFCQWFVREAVRTYGREAIMTELLDKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAG 129 (300)
T ss_pred -CCCCeEEEeccccccccccHHHHHHHHHHHHHHccCCHHHHHHHHcCeEEEEEeecCCcCeeeeccCHHHHHhcCCCCC
Confidence 368999999999999999999999999999973 57889999999999999999999998653 23
Q ss_pred CCCCCCCCCCCCC------------------CCCCCCChhhhhhhc
Q psy17594 551 TDTRGVNLNRYYT------------------NPSPVYHPSVFAARS 578 (579)
Q Consensus 551 ~n~~G~DLNR~w~------------------~P~~~~~Pei~a~K~ 578 (579)
.+|.||||||||. .+.+.+.||+.|++.
T Consensus 130 ~~c~GVDLNRNf~~~w~~~g~s~~pc~~~Y~G~~p~SEpEt~Al~~ 175 (300)
T cd03871 130 SSCIGTDPNRNFNAGWCTVGASRNPCDETYCGSAPESEKETKALAD 175 (300)
T ss_pred CCccccccCcCCCCccCCCCCCCCCCCCCcCCCCCCCCHHHHHHHH
Confidence 2368999999996 156788999999874
No 31
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.91 E-value=2.4e-24 Score=220.91 Aligned_cols=138 Identities=21% Similarity=0.203 Sum_probs=118.9
Q ss_pred CC-HHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q psy17594 409 YS-YSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFT 487 (579)
Q Consensus 409 YT-Ys~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~ 487 (579)
++ ++++.++|++|++++|+ .+...+|+|++||+|..|+|+...+. .+
T Consensus 3 h~~~~ei~~~l~~l~~~~p~----------~~~~~ig~S~egr~i~~i~~~~~~~~----------------------~~ 50 (272)
T cd06227 3 HTATDEINEEADALVKNIRL----------SRLGELIESVKVRNFSSITLNPNGDP----------------------SK 50 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCC----------cEEeeeeeccCCceeeEEEecCCCCC----------------------CC
Confidence 67 99999999999999975 36677999999999999999864210 03
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhCC------ChHHHHHhcccEEEEEeeeCCCeeecC-----CCCCCCCCC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTRD------DPIASLLRKMYLFKIIPMLNPDGVARG-----HYRTDTRGV 556 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~------d~~a~~Lr~~~vf~IVPmlNPDGv~~G-----n~R~n~~G~ 556 (579)
.|+.|||.|++|++||.|+.+++.||+.|+... ++.++.|+++++|+||||+||||+.+. .||.|+.|+
T Consensus 51 ~k~~i~i~agiHarE~i~~~~~l~li~~L~~~~~~~~~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~wR~N~~GV 130 (272)
T cd06227 51 KKVKALLLFGEHARELISPETGLHLLSNLCGELAETFDWGDLLKNILDNFDLKIIPNENPDGRKKVESGNYCLRENENGV 130 (272)
T ss_pred CCCEEEEECCccCCchhhHHHHHHHHHHHHHhcccccchhHHHHHHHhcCcEEEEeccCCchheeEeccCcccccCCccc
Confidence 689999999999999999999999999999852 256899999999999999999999862 489999999
Q ss_pred CCCCCCCC----------------CCCCCChhhhhhhc
Q psy17594 557 NLNRYYTN----------------PSPVYHPSVFAARS 578 (579)
Q Consensus 557 DLNR~w~~----------------P~~~~~Pei~a~K~ 578 (579)
||||||.. |.+.+.||+.|+++
T Consensus 131 DLNRNf~~~w~~~~~~~~~~~y~G~~~~sEpEt~av~~ 168 (272)
T cd06227 131 DLNRNYGADWGFKEDDYEDEEYSGPAPFSEPETRVLRD 168 (272)
T ss_pred cccccCCcccccCCCCccccccCCCCCCCcHHHHHHHH
Confidence 99999942 35778999999875
No 32
>cd06242 Peptidase_M14-like_1_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.91 E-value=2.7e-24 Score=220.25 Aligned_cols=136 Identities=21% Similarity=0.218 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q psy17594 408 PYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFT 487 (579)
Q Consensus 408 PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~ 487 (579)
+-+|+++.+||++|++++|.. .+++.+|+|.|||+|++++|+++.+.. ..+
T Consensus 2 ~t~y~e~~~~l~~La~~~~~i---------~~~~~iG~S~eGR~i~~l~is~~~~~~--------------------~~~ 52 (268)
T cd06242 2 PTSHEEMESFMKSLASKNDWM---------SYHSDIGKSEEGRSIPYVYLSTSKSSS--------------------SSS 52 (268)
T ss_pred CCCHHHHHHHHHHHHHHCCCe---------EEEEECccccCCceeEEEEEecCCccc--------------------cCC
Confidence 358999999999999887541 238999999999999999999754210 014
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSP 567 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~ 567 (579)
+||+|||+|+|||+|+.|+.+++.+++.|+.. +....|+++++|+||||+||||+++ ..|.|+.|+||||+|..
T Consensus 53 ~kp~V~i~~giHg~E~~g~~a~l~ll~~L~~~--~~~~~lL~~~~i~ivP~~NPDG~~~-~~R~na~g~DlNRD~~~--- 126 (268)
T cd06242 53 KKLRVWLQGGVHGNEPAGDEAALALLGKLDNN--PKWASVLEKIDIIVLPRYNPDGSAY-FQRTLATGYDPNRDHTK--- 126 (268)
T ss_pred CCCEEEEECCcCCCCHHHHHHHHHHHHHHHhC--chHHHHHhcCeEEEEeccCcchhhh-ccccCCcCcccCCCCCc---
Confidence 79999999999999999999999999999973 3345899999999999999999997 56999999999999985
Q ss_pred CCChhhhhhhc
Q psy17594 568 VYHPSVFAARS 578 (579)
Q Consensus 568 ~~~Pei~a~K~ 578 (579)
..+||+.++++
T Consensus 127 ~~~pEtra~~~ 137 (268)
T cd06242 127 LARQQTRDIKE 137 (268)
T ss_pred ccCHHHHHHHH
Confidence 46999999875
No 33
>KOG2650|consensus
Probab=99.91 E-value=1.3e-24 Score=232.50 Aligned_cols=143 Identities=31% Similarity=0.452 Sum_probs=126.6
Q ss_pred EEccCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCC
Q psy17594 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCR 482 (579)
Q Consensus 403 fA~~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~ 482 (579)
|.|...++++++++||+.|+++||+. +.+..||+|.|||+|.+|+||.+.+
T Consensus 116 ~~~~~Y~~le~I~~~l~~l~~~~P~~---------v~~~~IG~s~EgR~i~~lkIs~~~~-------------------- 166 (418)
T KOG2650|consen 116 FNWERYHSLEEIYEWLDNLAERYPDL---------VSLIHIGRSYEGRPLKVLKISGGDN-------------------- 166 (418)
T ss_pred ccHHHhcCHHHHHHHHHHHHHhCCCc---------eEEEEcccccCCceEEEEEecCCCC--------------------
Confidence 44556689999999999999999864 6899999999999999999997421
Q ss_pred CCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC-----CCC----
Q psy17594 483 PKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH-----YRT---- 551 (579)
Q Consensus 483 ~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-----~R~---- 551 (579)
.+||+|||.|++|++||+|+.++..+|+.|+.. +|+..+.|+++++|+|+|++||||+++.+ ||.
T Consensus 167 ----~~k~~I~id~GiHAREWIspAta~~~i~qLv~~y~~~~~~~~ll~~~dwyI~Pv~NPDGYeYS~t~~R~WRKnRs~ 242 (418)
T KOG2650|consen 167 ----RNKKAIFIDAGIHAREWISPATALWFINQLVSSYGRDPAVTKLLDKLDWYILPVVNPDGYEYSRTTDRLWRKNRSP 242 (418)
T ss_pred ----CCCceEEEecchhHHhhccHHHHHHHHHHHHhhhccCHHHHHHHhcCcEEEEeeecCCcceeeecccccccccCCC
Confidence 479999999999999999999999999999986 78999999999999999999999999875 331
Q ss_pred -----CCCCCCCCCCCC-------------------CCCCCCChhhhhhhc
Q psy17594 552 -----DTRGVNLNRYYT-------------------NPSPVYHPSVFAARS 578 (579)
Q Consensus 552 -----n~~G~DLNR~w~-------------------~P~~~~~Pei~a~K~ 578 (579)
.|.|+||||||+ .|.|.+.||+.|++.
T Consensus 243 ~~~~~~C~GvDlNRNfd~~W~~~~Gas~~PCse~Y~G~~pfSEpEt~av~~ 293 (418)
T KOG2650|consen 243 NGCASRCIGVDLNRNFDFHWGGGKGASSDPCSETYAGPSPFSEPETRAVRD 293 (418)
T ss_pred CCCCCeeeCCCCCCCccCcCCCCCCCCCCCCccccCCCCCCCcHHHHHHHH
Confidence 279999999997 367999999999874
No 34
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.91 E-value=6e-26 Score=231.07 Aligned_cols=187 Identities=19% Similarity=0.323 Sum_probs=158.4
Q ss_pred ccceeeeeeccCCCCcccccceEEEeee--CCCcc-------CcccCCCceeeeccccccCccceeEEEEEEeccccccc
Q psy17594 12 LSSILDFITGSESSGGGEGIDYEFNVWP--KADCA-------GTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKM 82 (579)
Q Consensus 12 ~~~~~d~~~~~~~~~~~~~~~~ef~i~~--~PD~~-------~~~~~~~~r~wf~f~~~~~~~~~~~~~~ivn~~k~~~l 82 (579)
+-++||+|++.++.++.++++++|.|.| |||++ +..|-|+||.|-.+++..+|....+|..|-++.+..+.
T Consensus 63 ~~~li~~L~~~~~~~~~L~~~~~~~IvP~~NPDGv~~gn~R~~~~G~DLNR~w~~p~~~~~PEv~av~~~i~~~~~~~~~ 142 (261)
T cd06908 63 CQGLIDFLVSNHPIAKVLREHLVFKIVPMLNPDGVFLGNYRCSLMGHDLNRHWHDPSPWAHPTLHAVKNLLKELDNDSTT 142 (261)
T ss_pred HHHHHHHHhhCCHHHHHHHHhCcEEEEeeecCcceeecCCcCcCcCcCCCCCCCCCCcccChHHHHHHHHHHHhhhcccc
Confidence 4578999999989899999999999997 99987 34578999999999999999999998888887653211
Q ss_pred ccccccceEeecCC--ceEEeCCCCCChhhhHHHHHHHHHHhhcCCCccccCcccchhhhhhcccCCCccccCCcceehh
Q psy17594 83 FSQGMAPVYRSHST--RIFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGLSREGAGRVAVG 160 (579)
Q Consensus 83 ~~~g~~p~v~s~~~--~~F~yGn~~~~~~~~~~~~~fp~l~s~n~~~f~~~~c~F~~~~m~~~d~~~~~~kegsgRv~~~ 160 (579)
..-++.++|+|+. ++|+|||..++...+.+++.||+||++++|+|++..|.|+. .++|+|||||++|
T Consensus 143 -~i~~~lD~H~hs~~~~~F~yG~~~~~~~~~~~~~~fp~~l~~~~~~F~~~~~~f~~----------~~~k~gtar~~~~ 211 (261)
T cd06908 143 -QLDFYIDLHAHSSLMNCFIYGNTYDDVYRYERQLVFPKLLAQNAEDFSMEHTMFNR----------DAVKAGTGRRFLG 211 (261)
T ss_pred -CeeEEEEeeccccccceeeccccCCccccHHHHHHHHHHHHHhCHHhcccCCcccC----------CCCCCChHHHHHH
Confidence 2357788999986 79999998876666777899999999999999999999984 4789999999999
Q ss_pred hhcCc-ceeeEEEeeccccccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhhhhhhhh
Q psy17594 161 KITGL-IRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENAQDITLALW 224 (579)
Q Consensus 161 ~~~gi-~~syTlE~~y~~Gr~~n~~~p~~~d~~~~~~~~~~~~~ytp~~~e~vG~~~~~i~l~~~ 224 (579)
+.+|+ ++|||||++|. |... ++. ....+||+++|++||+++|+.+++||
T Consensus 212 ~~~~~~~~s~TlE~sf~-g~~~-------~~~-------~~~~~f~~~~~~~~G~~~~~~~~~~y 261 (261)
T cd06908 212 SLLSDNVNCYTLEVSFY-GYNL-------KGT-------TGITPYTEEGYMRLGRNLARTFLDYY 261 (261)
T ss_pred HHhCCCceEEEEeecCC-cccC-------CCC-------CCccccCHHHHHHHHHHHHHHHHhhC
Confidence 99995 89999999999 6544 110 11369999999999999999999886
No 35
>KOG3641|consensus
Probab=99.91 E-value=6.8e-26 Score=243.09 Aligned_cols=186 Identities=24% Similarity=0.294 Sum_probs=161.1
Q ss_pred ccceeeeeeccCCCCcccccceEEEeee--CCCcc-------CcccCCCceeeeccccccCccceeEEEEEEeccccccc
Q psy17594 12 LSSILDFITGSESSGGGEGIDYEFNVWP--KADCA-------GTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKM 82 (579)
Q Consensus 12 ~~~~~d~~~~~~~~~~~~~~~~ef~i~~--~PD~~-------~~~~~~~~r~wf~f~~~~~~~~~~~~~~ivn~~k~~~l 82 (579)
+.||+||+++++|.+..+++-+.|+|.+ |||++ +.+|+++||+|-.++.|.|++.+.+|+.|.+|......
T Consensus 449 mkGilefl~s~~p~aq~LRe~~vFKI~PMLNPDGV~~GnyRCSL~G~DLNR~w~tps~~shPsi~~~k~li~~l~~~~~~ 528 (650)
T KOG3641|consen 449 MKGILEFLVSNSPLAQGLRESYVFKIVPMLNPDGVIVGNYRCSLMGLDLNRMWSTPSPASHPSIYAVKQLIQQLSNVPHS 528 (650)
T ss_pred HHHHHHHhhcCCcHHHhhhhheeEecccccCCCceecccceeccccchhhhhcCCCCcccchhHHhHHHHHhhhhccccc
Confidence 3589999999999999999999999997 99975 78999999999999999999999999999999976552
Q ss_pred ccccccceEeecCC--ceEEeCCCCCCh--hh-hHHHHHHHHHHhhcCCC-ccccCcccchhhhhhcccCCCccccCCcc
Q psy17594 83 FSQGMAPVYRSHST--RIFMYGNHFQNT--VD-KVECMLLAKIMSINSPH-FHFHACNFTERIMYLRDRRDGLSREGAGR 156 (579)
Q Consensus 83 ~~~g~~p~v~s~~~--~~F~yGn~~~~~--~~-~~~~~~fp~l~s~n~~~-f~~~~c~F~~~~m~~~d~~~~~~kegsgR 156 (579)
.--.++++|+|+. .+|||||+.++. +. +.++++|||+++.|||+ |.|++|.|+. .++|||+||
T Consensus 529 -~p~~Y~DlHgHSqK~n~FvYGnv~~~~~~~~~~q~q~lfpk~L~~~apskF~~SSc~Fs~----------~k~Ke~t~r 597 (650)
T KOG3641|consen 529 -RPLGYVDLHGHSQKVNHFVYGNVNEERSQDRERQQQRLFPKPLCSNAPSKFSFSSCPFSV----------HKSKEGTLR 597 (650)
T ss_pred -CceEeecccccccccceEEecCcCCchhHHHHHhhcccchhhhhhcCCCccccccCcchh----------hhhcccccc
Confidence 2356799999986 899999998765 33 66779999999999999 9999999996 599999999
Q ss_pred eehhhhcCcceeeEEEeeccccccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhhhhhhhhc
Q psy17594 157 VAVGKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENAQDITLALWV 225 (579)
Q Consensus 157 v~~~~~~gi~~syTlE~~y~~Gr~~n~~~p~~~d~~~~~~~~~~~~~ytp~~~e~vG~~~~~i~l~~~~ 225 (579)
|.+|+ +|...|||||-++. |..+ ...+ ....+++++|.+|+++|.++++.+.
T Consensus 598 v~~w~-ig~~tsytlest~~-g~s~----g~~~-----------~~~l~t~~le~~~~~~~~tll~~~s 649 (650)
T KOG3641|consen 598 VSVWR-IGVSTSYTLESTFS-GESV----GVIG-----------KTLLGTEDLEPCIKTRLQTLLRRSS 649 (650)
T ss_pred eeeec-ccceeeeeEeeccC-ccee----eeec-----------ceeechhHHHHHhHHHhhhhhcccC
Confidence 99996 59999999999999 6544 1112 2677899999999999999876543
No 36
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.91 E-value=5.7e-24 Score=225.54 Aligned_cols=110 Identities=32% Similarity=0.447 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q psy17594 408 PYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFT 487 (579)
Q Consensus 408 PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~ 487 (579)
.|||++|.++|++|++++|+. ++++.||+|.|||+|.+|+|++..+.. ..
T Consensus 4 Y~ty~ei~~~L~~La~~~P~l---------v~l~~IG~S~EGR~I~~l~Is~~~~~~---------------------~~ 53 (360)
T cd06905 4 YYRYDELTAALQAWASAYPQL---------CSLESIGKSYEGRDIWLLTLTNQATGP---------------------DR 53 (360)
T ss_pred CCCHHHHHHHHHHHHHHCCCc---------eEEEEeeecCCCCceEEEEecCCCCCC---------------------CC
Confidence 479999999999999998763 688999999999999999999753210 13
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARG 547 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~G 547 (579)
+||+|||.|++||+||.|+.+++.+|+.|+.. +|+.++.|+++++|+|||++||||+++.
T Consensus 54 ~Kp~I~i~~giHarEwig~~~~l~li~~Ll~~y~~d~~i~~lLd~~~~~IvP~vNPDG~e~~ 115 (360)
T cd06905 54 EKPAFWIDANIHATEVTGSAVALYVIQTLLNGYGSDPEVTRLLDGYTFYILPRLNPDGAEQA 115 (360)
T ss_pred CCcEEEEecCCCCCchHHHHHHHHHHHHHHHhccCCHHHHHHHhcCeEEEEeeeCCChheEE
Confidence 69999999999999999999999999999984 5899999999999999999999999853
No 37
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=99.91 E-value=3.8e-24 Score=230.14 Aligned_cols=126 Identities=21% Similarity=0.272 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q psy17594 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTD 488 (579)
Q Consensus 409 YTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~ 488 (579)
++|+++.+||++|++++|+. +++..||+|.|||+|++|+|++..+.. ...
T Consensus 2 ~~y~ei~~~l~~la~~~p~~---------~~~~~iG~S~EGR~i~~l~is~~~~~~---------------------~~~ 51 (395)
T cd03867 2 HSYSQMVSVLKRTAARCSHI---------ARTYSIGRSFEGRDLLVIEFSSNPGQH---------------------ELL 51 (395)
T ss_pred CCHHHHHHHHHHHHHhCCCc---------eEEEEccccCCCceEEEEEeccCCCcc---------------------ccc
Confidence 79999999999999999863 688999999999999999998743210 135
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhC---CChHHHHHhcccEEEEEeeeCCCeeecC-----------CCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTR---DDPIASLLRKMYLFKIIPMLNPDGVARG-----------HYRTDTR 554 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~---~d~~a~~Lr~~~vf~IVPmlNPDGv~~G-----------n~R~n~~ 554 (579)
||.|++.|++|++||.|..++..+++.|++. .|+.++.|+++++|+||||+||||+++. ..|.||.
T Consensus 52 kp~v~i~~giHg~E~ig~~~~~~l~~~L~~~~~~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~~~~~~wr~~R~n~~ 131 (395)
T cd03867 52 EPEVKYIGNMHGNEVLGRELLIYLAQFLCSEYLLGNQRIQTLINTTRIHLLPSMNPDGYEAAASEGAGYNGWTNGRQNAQ 131 (395)
T ss_pred CCeEEEEccccCCcHHHHHHHHHHHHHHHHhhhcCCHHHHHHhhCcEEEEEeccCCchHHhhhhcCccccccccCCcCCC
Confidence 8999999999999999999999999999963 5788999999999999999999999863 2488999
Q ss_pred CCCCCCCCCC
Q psy17594 555 GVNLNRYYTN 564 (579)
Q Consensus 555 G~DLNR~w~~ 564 (579)
|+||||||..
T Consensus 132 GvDLNRNf~~ 141 (395)
T cd03867 132 NIDLNRNFPD 141 (395)
T ss_pred CcccccCCCc
Confidence 9999999974
No 38
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=99.89 E-value=2.3e-24 Score=219.76 Aligned_cols=183 Identities=23% Similarity=0.320 Sum_probs=152.1
Q ss_pred ccccceeeeeeccCCCCcccccceEEEeee--CCCcc-------CcccCCCceeeeccccccCccceeEEEEEEeccccc
Q psy17594 10 KQLSSILDFITGSESSGGGEGIDYEFNVWP--KADCA-------GTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQV 80 (579)
Q Consensus 10 ~~~~~~~d~~~~~~~~~~~~~~~~ef~i~~--~PD~~-------~~~~~~~~r~wf~f~~~~~~~~~~~~~~ivn~~k~~ 80 (579)
.-+-++|++|.+..+.++.++++++|.|.| |||++ +..|.|+||.|.++....+|.-+.++..|-.+.+..
T Consensus 63 ~~~~~ll~~Ll~~~~~~~~Ll~~~~~~iiPm~NPDG~~~g~~R~n~~GvDLNR~w~~p~~~~~PE~~~~~~~i~~~~~~~ 142 (258)
T cd06235 63 FVMQGFIDFLLSDSPEAQYLRENFIFKIIPMLNPDGVIHGNYRCSLSGIDLNRQWKNPDKKLHPEIYHVKQLIKKLSQER 142 (258)
T ss_pred HHHHHHHHHHhcCCHHHHHHHhccEEEEEccccccceeecCCcCCCCCCCcCCCCCCCCcccCcHHHHHHHHHHHHhccC
Confidence 445678899998887778899999999997 99987 345899999999988888888888777766665443
Q ss_pred ccccccccceEeecCC--ceEEeCCCCCChh-hhHHHHHHHHHHhhcCCCccccCcccchhhhhhcccCCCccccCCcce
Q psy17594 81 KMFSQGMAPVYRSHST--RIFMYGNHFQNTV-DKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGLSREGAGRV 157 (579)
Q Consensus 81 ~l~~~g~~p~v~s~~~--~~F~yGn~~~~~~-~~~~~~~fp~l~s~n~~~f~~~~c~F~~~~m~~~d~~~~~~kegsgRv 157 (579)
++ -+..++|+|++ ++|+|||...... .+.++++||++|+++||+|++.+|.|+. +.+|+||+||
T Consensus 143 ~~---~~~iDlH~~s~~~~~F~yg~~~~~~~~~~~~~~~~p~~~~~~~~~f~~~~c~f~~----------~~~k~~tar~ 209 (258)
T cd06235 143 NI---ALFIDLHGHSRKKNSFMYGCSNSDDPLNYYKERLFPKLLSKLCPYFSFSSCSFKV----------QKDKEGTARV 209 (258)
T ss_pred Cc---eEEEecccccccCCeeeecCCCCCcHHHHHHHHHHHHHHHhhCcccCccccccCC----------CCCCCCcHHH
Confidence 44 56778899985 9999999875433 3678899999999999999999999996 5799999999
Q ss_pred ehhhhcCcceeeEEEeeccccccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhhhhh
Q psy17594 158 AVGKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENAQDITL 221 (579)
Q Consensus 158 ~~~~~~gi~~syTlE~~y~~Gr~~n~~~p~~~d~~~~~~~~~~~~~ytp~~~e~vG~~~~~i~l 221 (579)
++|+.+|+.+|||||++|.++... +....+|++++|++||+++|..++
T Consensus 210 ~~~~~~~~~~syTlE~sf~g~~~~----------------~~~~~~~~~~~~~~~G~~~~~al~ 257 (258)
T cd06235 210 ALWRELGIPNSYTLETSFGGYDKG----------------NRAGTHFTIEDLKEIGQDICKALL 257 (258)
T ss_pred HHHHHcCCceEEEEeeeccccccC----------------CCcCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999943333 013479999999999999998874
No 39
>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.89 E-value=5.9e-23 Score=205.84 Aligned_cols=109 Identities=29% Similarity=0.430 Sum_probs=100.6
Q ss_pred EEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHH
Q psy17594 438 YVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLL 517 (579)
Q Consensus 438 ~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll 517 (579)
++++++|+|.+||+|++|+|++ +||.|+|+|++||+|+.|+++++.++++|+
T Consensus 10 v~~~~iG~S~eGrpI~~l~ig~----------------------------g~~~vli~agiHG~E~~g~~all~ll~~L~ 61 (231)
T cd06239 10 FKVEVIGKSVEGRPIYSVKFGS----------------------------GKIKILLWSQMHGNESTTTKALLDLLNFLG 61 (231)
T ss_pred eEEEEeeECCCCCeEEEEEEcC----------------------------CCcEEEEEeccCCCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999984 578999999999999999999999999999
Q ss_pred hCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594 518 TRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 518 ~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~ 578 (579)
+..++.++.|++++.|+||||+||||+.. ++|+|+.|+||||+|.. ..+||+.++++
T Consensus 62 ~~~~~~~~~ll~~~~v~iiP~lNPDG~~~-~~R~N~~GvDLNRdf~~---~s~PEtr~l~~ 118 (231)
T cd06239 62 TSKDQEAKKILDEVTLVIIPMLNPDGAEA-YTRVNANGVDLNRDAQD---LSQPESRLLRD 118 (231)
T ss_pred HCCCHHHHHHHhCCEEEEEeccCccHHHH-cccCCCcCCcCCCCCCC---CChHHHHHHHH
Confidence 87666679999999999999999999996 78999999999999974 46999999875
No 40
>cd06241 Peptidase_M14-like_1_4 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.89 E-value=7.4e-23 Score=209.44 Aligned_cols=131 Identities=29% Similarity=0.336 Sum_probs=108.6
Q ss_pred HHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEE
Q psy17594 416 THLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLS 495 (579)
Q Consensus 416 ~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~Is 495 (579)
+|+++|+++++ .++.++||+|.+||+|++|+|++...... + ....++||+|||+
T Consensus 1 a~~~~La~~~~----------~v~~~~iG~S~eGR~i~~l~is~~~~~~~-----------~-----~~~~~~kp~v~i~ 54 (266)
T cd06241 1 AFLERLAAASP----------LIRLESFGKTPEGRPLHLLVLSKDGAFTP-----------E-----EAKRSGKPVVLVQ 54 (266)
T ss_pred CHHHHHHHhCC----------ceEEEEeEeCCCCCeeEEEEEecCCccch-----------h-----hhcccCCCEEEEe
Confidence 37888887764 37999999999999999999997532110 0 0011479999999
Q ss_pred CCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecC--------------CCCCCCCCCCCCCC
Q psy17594 496 ARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARG--------------HYRTDTRGVNLNRY 561 (579)
Q Consensus 496 ARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~G--------------n~R~n~~G~DLNR~ 561 (579)
|++||+|+.|+.+++.+++.|+.... ..|+++++|+||||+||||+.+. .+|+|+.|+||||+
T Consensus 55 agiH~~E~~G~~a~~~ll~~L~~~~~---~~ll~~~~i~ivP~~NpDG~~~~~~~~r~~q~gp~~~~~R~na~g~DLNRd 131 (266)
T cd06241 55 AGIHAGEIDGKDAGLMLLRDLADGKK---DALLDKVVLVFIPVFNVDGHERRSPYNRTNQNGPEEYGWRGNARNLNLNRD 131 (266)
T ss_pred CCcCCCCchHHHHHHHHHHHHHhcch---HHHHhCCEEEEEeCCCccHHHhcccccccccCCCCccCceecccceecCCC
Confidence 99999999999999999999997533 28999999999999999999864 38999999999999
Q ss_pred CCCCCCCCChhhhhhhc
Q psy17594 562 YTNPSPVYHPSVFAARS 578 (579)
Q Consensus 562 w~~P~~~~~Pei~a~K~ 578 (579)
|.+. .+||+.|+++
T Consensus 132 f~~~---~~pEtra~~~ 145 (266)
T cd06241 132 FIKL---DAPEMRAFAK 145 (266)
T ss_pred Cccc---CCHHHHHHHH
Confidence 9864 5899999874
No 41
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=99.87 E-value=6.4e-22 Score=204.94 Aligned_cols=121 Identities=23% Similarity=0.320 Sum_probs=102.0
Q ss_pred EEEEEeEEec------CCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHH
Q psy17594 438 YVRECVCYTL------EGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNG 511 (579)
Q Consensus 438 ~~~~~Lg~S~------eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g 511 (579)
++..+||+|. +||+|++|+|++..... ...+||.|||.|++|++|+.|+.+++.
T Consensus 5 ~~~~~iG~S~~~~~~~eGR~I~~l~ig~~~~~~--------------------~~~~kp~v~i~~~iHarE~ig~~~~l~ 64 (293)
T cd06226 5 AQWVDIGDSWDKPGGPAGYDIRALKLTNKATNS--------------------PTGPKPVFFIMGAIHAREYTTAELVLR 64 (293)
T ss_pred eEEEEeeEecccCcccCCceEEEEEEecCCCCc--------------------CCCCCCEEEEECCcCCCcHHHHHHHHH
Confidence 6889999999 99999999999754210 014699999999999999999999999
Q ss_pred HHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecC----CCC------------CCCCCCCCCCCCC----------
Q psy17594 512 VINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARG----HYR------------TDTRGVNLNRYYT---------- 563 (579)
Q Consensus 512 ~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~G----n~R------------~n~~G~DLNR~w~---------- 563 (579)
+|+.|+.. .|+.++.|+++++|+||||+||||+.+. .+| +|+.||||||||.
T Consensus 65 ~i~~L~~~~~~d~~v~~lL~~~~i~ivP~~NPDG~~~~~~~~~wRkNr~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~~ 144 (293)
T cd06226 65 FAEDLLEGYGTDADATWLLDYHEIHVVPIVNPDGRKIAEQGLSQRKNANTSGGSNCSGSSYGVDLNRNYSFGWGGAGASS 144 (293)
T ss_pred HHHHHHHhcccCHHHHHHHhcCeEEEEecccCCcceeeccCcceeccCCCCCCCCccccccccccccCCCCcCCcCCCCC
Confidence 99999974 5788999999999999999999999854 234 3458999999985
Q ss_pred ---------CCCCCCChhhhhhhc
Q psy17594 564 ---------NPSPVYHPSVFAARS 578 (579)
Q Consensus 564 ---------~P~~~~~Pei~a~K~ 578 (579)
.|.+.++||+.|++.
T Consensus 145 ~~p~~~~y~G~~p~SEpEt~Av~~ 168 (293)
T cd06226 145 GDPCSETYRGPAPGSEPETAALED 168 (293)
T ss_pred CCCCCCCcCCCCCCCcHHHHHHHH
Confidence 144789999999874
No 42
>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.86 E-value=4.8e-22 Score=202.14 Aligned_cols=132 Identities=22% Similarity=0.283 Sum_probs=101.5
Q ss_pred eEEecCCeeeeEEEEecCCCC-CCCCCCCCCCC--CCC--CccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHH
Q psy17594 443 VCYTLEGRRVDLLTISSHHGI-TNVSEPRLPHL--FPE--DATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLL 517 (579)
Q Consensus 443 Lg~S~eGR~I~lLtIts~~~~-~~~~e~~~~~l--~p~--~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll 517 (579)
||+|.|||++++++|+++... ..-++...... -|. ....++...+.|+.|++.|++||+|+.|+.+++.+++.|+
T Consensus 1 iGkS~eGR~l~~~~Is~~~a~ld~~~~~~~~l~l~dp~~~~~~~~~~~~~~~k~v~~~~~iHg~E~~g~~a~l~ll~~L~ 80 (268)
T cd06244 1 AGKSAEGRDIPVVVVAKPEAAVDKYENETLPLMLENPPELADKIEDGTIEDYKPPIINNNIHPDETPGIDAQTELIEELA 80 (268)
T ss_pred CCcCCCCCeeEEEEEeCcHHHHHHHHHHhhhhhhcCcccchhhhccccccccCeEEEEeCcCCCCHHHHHHHHHHHHHHH
Confidence 699999999999999997510 00000000000 000 0111222335678888889999999999999999999999
Q ss_pred hCC----------------ChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594 518 TRD----------------DPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 518 ~~~----------------d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~ 578 (579)
... ++.++.||++++|+|+||+||||+.+ ++|+|+.|+||||+|.. .++||++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~~lL~~~~i~i~P~~NPDG~~~-~~R~Na~G~DLNRD~~~---~sqpEt~av~~ 153 (268)
T cd06244 81 QEDEIEFNTTDADGNEVTETLDVDDLLEKVIFLFNVTENPDGRVA-GTRENANGFDLNRDNSF---QTQPETQAIVA 153 (268)
T ss_pred hcccccccccccccccccCCHHHHHHHhcCEEEEEecccCCccee-eeecCCCccccCCCCCc---ccCHHHHHHHH
Confidence 865 88899999999999999999999997 47999999999999974 57999999875
No 43
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.86 E-value=1.4e-22 Score=207.65 Aligned_cols=132 Identities=26% Similarity=0.225 Sum_probs=102.6
Q ss_pred eEEecCCeeeeEEEEecCCCCCCCCCC--CCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhCC
Q psy17594 443 VCYTLEGRRVDLLTISSHHGITNVSEP--RLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRD 520 (579)
Q Consensus 443 Lg~S~eGR~I~lLtIts~~~~~~~~e~--~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~ 520 (579)
+|+|.|||++.+++|+++.+.....+- ...++ .+.....+.....|++|||.|++|++|+.|+.+++.+++.|+..+
T Consensus 1 ~G~s~egR~l~~~~I~s~~n~~~l~~~~~~~~~l-a~p~~~~~~~~~~~~~v~i~~~iH~~E~~g~~~~l~l~~~L~~~~ 79 (271)
T cd06238 1 YGRTHEGRPLLLATITSPENIARLDQIREDHLAL-ADPAATSSLISDQPVVVWLGYSVHGNEISGTEAALLTAYHLAAAQ 79 (271)
T ss_pred CCcCCCCCeeEEEEEeCHHHHHhHHHHHHHHHHh-cCccccccccccCCcEEEEECCcCCCChHHHHHHHHHHHHHHHcC
Confidence 589999999999999997654321110 00001 010000011225799999999999999999999999999999888
Q ss_pred ChHHHHHhcccEEEEEeeeCCCeeec-CC-------------------------CCCCCCCCCCCCCCCCCCCCCChhhh
Q psy17594 521 DPIASLLRKMYLFKIIPMLNPDGVAR-GH-------------------------YRTDTRGVNLNRYYTNPSPVYHPSVF 574 (579)
Q Consensus 521 d~~a~~Lr~~~vf~IVPmlNPDGv~~-Gn-------------------------~R~n~~G~DLNR~w~~P~~~~~Pei~ 574 (579)
|+.++.||++++|+||||+||||+++ ++ .|.|+.|+||||||. +.++||+.
T Consensus 80 ~~~~~~ll~~~~i~i~P~~NPDG~~r~~~w~~~~~~~~~~~d~~~r~~~~~wp~~R~n~~g~DLNRD~~---~~s~pEtr 156 (271)
T cd06238 80 GDEIEALLDNAVVLIDPMQNPDGRDRFVNWYNSNRGMVPSADPQDREHNEPWPGGRTNHYWFDLNRDWL---PLTQPESR 156 (271)
T ss_pred CHHHHHHHhcCEEEEEeccCCCHHHHHHHhhhhccCCccccchhhhhcccCCccccccccCcccccccc---cccCHHHH
Confidence 89999999999999999999999984 32 378999999999998 46799999
Q ss_pred hhhc
Q psy17594 575 AARS 578 (579)
Q Consensus 575 a~K~ 578 (579)
++.+
T Consensus 157 a~~~ 160 (271)
T cd06238 157 GRLA 160 (271)
T ss_pred HHHH
Confidence 9864
No 44
>cd06243 Peptidase_M14-like_1_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.85 E-value=3e-21 Score=194.23 Aligned_cols=114 Identities=20% Similarity=0.273 Sum_probs=100.1
Q ss_pred eEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCCh
Q psy17594 443 VCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDP 522 (579)
Q Consensus 443 Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~ 522 (579)
+|+|.|||+|++|+||++.+...+ ...+||.||++|++|++|+.|+.+++.+++.|+..+++
T Consensus 1 iG~S~eGRpi~~l~i~~~~~~~~~------------------~~~~~p~v~i~~giHG~E~~G~~a~l~ll~~L~~~~~~ 62 (236)
T cd06243 1 IGTSQRGRPIHLVRVGFAEGPSAL------------------DIANRPTVLLVGTQHGDEPAGREALLIIARDLAFGEDE 62 (236)
T ss_pred CccCCCCCeeEEEEEecCCCcccc------------------ccCCCCEEEEECCcCCCChHHHHHHHHHHHHHHhcCCH
Confidence 699999999999999986542210 12478999999999999999999999999999987888
Q ss_pred HHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594 523 IASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 523 ~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~ 578 (579)
.++.|+++++++|||++||||+.++ .|.|+.|+||||+|.. ..+||..++++
T Consensus 63 ~~~~lL~~~~i~ivP~~NPDG~~~~-~R~n~~g~DlNRd~~~---~~~pEt~al~~ 114 (236)
T cd06243 63 ELVPLLHQTTVLFVPTANPDGREAD-TRSNADGIDINRDHLL---LNTPEAQALAS 114 (236)
T ss_pred HHHHHHhcceEEEEeCcCccHhhcC-CcCCCCCcccCCCCCC---CCCHHHHHHHH
Confidence 8999999999999999999999975 5999999999999985 46899998874
No 45
>cd03857 Peptidase_M14-like_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.84 E-value=9.2e-21 Score=189.75 Aligned_cols=115 Identities=23% Similarity=0.376 Sum_probs=98.6
Q ss_pred eEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCCh
Q psy17594 443 VCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDP 522 (579)
Q Consensus 443 Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~ 522 (579)
||+|.|||+|++++||++.+.... .....+|+.|||.|++|++|+.|+.++..+++.|+.. +.
T Consensus 1 iG~S~eGRpi~~~~i~~~~~~~~~----------------~~~~~~k~~v~i~~giHg~E~~g~~a~~~l~~~l~~~-~~ 63 (226)
T cd03857 1 IGKSVEGRPLWMVTLTTAEGMKKR----------------ALAKEGKPRVWIDAQIHGNESAGSDALLELLRQLASA-SD 63 (226)
T ss_pred CccCCCCCeEEEEEEeCCcccccc----------------ccccCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC-CH
Confidence 689999999999999986543210 0112479999999999999999999999999999874 44
Q ss_pred HHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594 523 IASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 523 ~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~ 578 (579)
.++.|+++++|+||||+||||+.+ .+|.|+.|+||||+|... .+||..++++
T Consensus 64 ~~~~ll~~~~i~ivP~~NPDG~~~-~~R~n~~g~DLNRd~~~~---~~pEt~~~~~ 115 (226)
T cd03857 64 EEAKMLENIVIVLIPRANPDGAAL-FTRENANGLDLNRDFLKL---TQPETRAVRE 115 (226)
T ss_pred HHHHHHhCCEEEEEeccCCChHHh-ccccCCCcccCCCCCCCc---CCHHHHHHHH
Confidence 568999999999999999999997 589999999999999864 6999998874
No 46
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=99.83 E-value=1.3e-20 Score=191.85 Aligned_cols=105 Identities=25% Similarity=0.404 Sum_probs=90.6
Q ss_pred ecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC---C--
Q psy17594 446 TLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTR---D-- 520 (579)
Q Consensus 446 S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~---~-- 520 (579)
|++||+|++++|++ ++|.|+|.|++|++||.|+.+++.+|+.|+.. +
T Consensus 1 S~eGR~I~~~~ig~----------------------------~~~~v~i~agiHarE~~~~~~~l~~i~~L~~~~~~~~~ 52 (255)
T cd06229 1 SVLGRDIYEVKLGN----------------------------GPKTVFYNASFHAREWITTLLLMKFIEEYARAYENNEK 52 (255)
T ss_pred CCCCceeeEEEEcC----------------------------CCceEEEECCccccchhhHHHHHHHHHHHHHHhccCcc
Confidence 68999999999985 24789999999999999999999999999963 1
Q ss_pred --ChHHHHHhcccEEEEEeeeCCCeeecCC-------------------------CCCCCCCCCCCCCCCC---------
Q psy17594 521 --DPIASLLRKMYLFKIIPMLNPDGVARGH-------------------------YRTDTRGVNLNRYYTN--------- 564 (579)
Q Consensus 521 --d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-------------------------~R~n~~G~DLNR~w~~--------- 564 (579)
+..++.|++++.|+||||+||||+.+.. +|+|+.|+||||||..
T Consensus 53 ~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~s 132 (255)
T cd06229 53 LGGYDLRELLENVTICFVPMVNPDGVEIVQNGPYAIRNYYLELLVINAGSINFKEWKANARGVDLNRNFPAGWEKEKAGP 132 (255)
T ss_pred ccchhHHHHHhcCeEEEEeCccCCchheeeecccccccchhhhHHhhcCCCcccccccCCcccccCCCCCCCCCcCCCCC
Confidence 4467999999999999999999998532 3789999999999742
Q ss_pred ----------CCCCCChhhhhhhc
Q psy17594 565 ----------PSPVYHPSVFAARS 578 (579)
Q Consensus 565 ----------P~~~~~Pei~a~K~ 578 (579)
|.+.++||+.|++.
T Consensus 133 ~~p~~~~y~G~~p~SEpEtral~~ 156 (255)
T cd06229 133 KAPAPRNYKGEQPLSEPETIALAE 156 (255)
T ss_pred CCCCccCcCCCCCCCchhHHHHHH
Confidence 36789999999874
No 47
>cd06240 Peptidase_M14-like_1_3 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.83 E-value=1.4e-20 Score=192.82 Aligned_cols=135 Identities=23% Similarity=0.243 Sum_probs=102.7
Q ss_pred EEEeEEecCCeeeeEEEEecCCCCCCC---CCCCCCCCC-C---CCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHH
Q psy17594 440 RECVCYTLEGRRVDLLTISSHHGITNV---SEPRLPHLF-P---EDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGV 512 (579)
Q Consensus 440 ~~~Lg~S~eGR~I~lLtIts~~~~~~~---~e~~~~~l~-p---~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~ 512 (579)
++.+|+|.|||++.+++||++.+.... ++.. .++. | ++...+.....+||+|||.|++|++|+.|+.+++.+
T Consensus 2 l~~iGkS~EGR~l~~~~Iss~~n~~~ld~~~~~~-~~la~~~~~~~~~a~~~~~~~kp~v~i~~~iHg~E~~g~ea~l~l 80 (273)
T cd06240 2 LVEIGKTEEGRPQIMAAISSPENLAKLDHYKAIL-RKLADPRGLTEEQARALIAEGKPIVWIDGGLHSTETGGPQMLMEL 80 (273)
T ss_pred eeEeecCCCCCeEEEEEeeChhHhhhHHHHHHHH-hhhhccccccchhhhhhhccCCCEEEEECCcCCCchHHHHHHHHH
Confidence 578999999999999999987653221 1100 0110 0 000111112247999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCC--C-----------------CCCCCCCCCCCCCCCCCCCCChhh
Q psy17594 513 INFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGH--Y-----------------RTDTRGVNLNRYYTNPSPVYHPSV 573 (579)
Q Consensus 513 l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn--~-----------------R~n~~G~DLNR~w~~P~~~~~Pei 573 (579)
++.|+..+|+.++.||++++|+|+|++||||+.+-- + |.+..|+||||+|.. ..+||.
T Consensus 81 ~~~L~~~~d~~~~~lLd~~~i~i~P~~NPDG~er~~~w~~~~~~~~~~~~~~~~~~~~~y~g~DlNRD~~~---~~~~et 157 (273)
T cd06240 81 AYRLATEEDPEIKRILDNVIVLIVPVANPDGRDRVVDWYMRTLGPPKRDRSPLPPLYGKYVGHDNNRDGYM---NQQETT 157 (273)
T ss_pred HHHHHhcCCHHHHHHHhcCEEEEEeCcCCCHHHHhhhhhhhccCCcccCCCCcccccCccCCcCCCcccch---hcCHHH
Confidence 999998889999999999999999999999998621 2 334578999999996 578998
Q ss_pred hhhhc
Q psy17594 574 FAARS 578 (579)
Q Consensus 574 ~a~K~ 578 (579)
.++++
T Consensus 158 ~~~~~ 162 (273)
T cd06240 158 NNSRK 162 (273)
T ss_pred HHHHH
Confidence 87764
No 48
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=99.80 E-value=1.1e-20 Score=193.73 Aligned_cols=184 Identities=24% Similarity=0.380 Sum_probs=152.6
Q ss_pred ccceeeeeeccCCCCcccccceEEEeee--CCCcc-------CcccCCCceeeeccccccCccceeEEEEEEeccc-ccc
Q psy17594 12 LSSILDFITGSESSGGGEGIDYEFNVWP--KADCA-------GTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNR-QVK 81 (579)
Q Consensus 12 ~~~~~d~~~~~~~~~~~~~~~~ef~i~~--~PD~~-------~~~~~~~~r~wf~f~~~~~~~~~~~~~~ivn~~k-~~~ 81 (579)
+-+++++|++..+.++-+.++++|-|.| |||++ +..|.|+||.|-.+....+|..+.++..|.++.+ ..+
T Consensus 73 ~~~li~~Ll~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~G~DLNR~~~~p~~~~~pE~~~~~~~~~~~~~~~~~ 152 (269)
T cd03856 73 MKGFLEFLLSDNPTAQSLRESFVFKIVPMLNPDGVIRGNYRCSLSGVDLNRQWQNPSPDLHPEIYLVKGLMLYLAAGKRG 152 (269)
T ss_pred HHHHHHHHHhCCHHHHHHHhcCeEEEEeeeCCccccccCCcCCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHhccCC
Confidence 4568888988777777789999999997 99987 3558899999998888888888888877766643 222
Q ss_pred cccccccceEeecC--CceEEeCCCCCChhhhHHHHHHHHHHhhcCCCccccCcccchhhhhhcccCCCccccCCcceeh
Q psy17594 82 MFSQGMAPVYRSHS--TRIFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGLSREGAGRVAV 159 (579)
Q Consensus 82 l~~~g~~p~v~s~~--~~~F~yGn~~~~~~~~~~~~~fp~l~s~n~~~f~~~~c~F~~~~m~~~d~~~~~~kegsgRv~~ 159 (579)
+ .+..++|+|+ .++|||||..++.....++++||++++++++.|++.+|.|+..|++..+ .++||+|+.+
T Consensus 153 ~---~~~idlH~~~~~~~~f~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-----~~~gtsr~~~ 224 (269)
T cd03856 153 V---LFYCDFHGHSRKKNVFMYGCSFKDEVWDQGYRIIPKMLSQNAPLFCMFGCSFKVEKSKASD-----PDRGTGRVVV 224 (269)
T ss_pred c---eEEEEecCCCccCceEeecCCCchhhhhhHHHHHHHHHHhhChhhhhcCCCcCCCcCCccc-----CCCChHHHHH
Confidence 2 5667889998 4999999998777778889999999999999999999999998777644 2779999999
Q ss_pred hhhcCcceeeEEEeeccccccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhhh
Q psy17594 160 GKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENAQDI 219 (579)
Q Consensus 160 ~~~~gi~~syTlE~~y~~Gr~~n~~~p~~~d~~~~~~~~~~~~~ytp~~~e~vG~~~~~i 219 (579)
|+.+|+++|||+|++|. |... + +..+.+||+++|++||+++|..
T Consensus 225 ~~~~~i~~syTlE~~~~-g~~~-------~--------~~~~~~~~~~~~~~~g~~~~~~ 268 (269)
T cd03856 225 AKQIKVQHSYTMEVTFN-GNDQ-------G--------NYKGLQYTTQLLPEMGRQFAVA 268 (269)
T ss_pred HHhcCCcEEEEEecCCC-Cccc-------C--------CcCCCCCChhhHHHHHHHHHhh
Confidence 99999999999999999 4433 0 1246899999999999999865
No 49
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.79 E-value=2.4e-19 Score=187.94 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=94.8
Q ss_pred EeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC--
Q psy17594 442 CVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTR-- 519 (579)
Q Consensus 442 ~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~-- 519 (579)
+=++|.|||+|.+|+|+.... ..||.|||+|++|++||.++.++..+|+.|+..
T Consensus 5 ~~~~S~EgR~I~~l~I~~~~~------------------------~~kp~V~i~ggiHAREwis~~~~l~~i~~Ll~~y~ 60 (332)
T cd06228 5 LPHKTYEGRTPHGAKIGAGTL------------------------TSRYGALFIGGVHARERGSPDNLIYFVSDLLNARK 60 (332)
T ss_pred CCCCCCCCCeeEEEEEeCCCC------------------------CCCCEEEEEccccccchhhHHHHHHHHHHHHHhhh
Confidence 347899999999999996321 369999999999999999999999999999973
Q ss_pred ------------CChHHHHHhcccEEEEEeeeCCCeeecCC-----CCC-----------CCCCCCCCCCCC--------
Q psy17594 520 ------------DDPIASLLRKMYLFKIIPMLNPDGVARGH-----YRT-----------DTRGVNLNRYYT-------- 563 (579)
Q Consensus 520 ------------~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn-----~R~-----------n~~G~DLNR~w~-------- 563 (579)
+|+.++.|++ ++|+||||+||||+++.+ ||. +|.|+||||||.
T Consensus 61 ~~~~~~yg~~~~~d~~v~~lL~-~~i~IvP~vNPDGy~~s~~~~r~WRKNr~~~~~~~~~~c~GVDLNRNf~~~W~~~~~ 139 (332)
T cd06228 61 AGRGIKYGGRTYTAADVKAILD-AGIVVFPLVNPDGRAHDQTANSCWRKNRNPASAGPNPSSVGVDINRNFDFLWDFQKY 139 (332)
T ss_pred ccccccccccccccHHHHHHHh-CeEEEEEeecCcchhheeccchhhhccCCCCcccccCcccccccCCCCCCCcCcccc
Confidence 3678999999 999999999999999742 342 578999999973
Q ss_pred ------------C--------CCCCCChhhhhhhc
Q psy17594 564 ------------N--------PSPVYHPSVFAARS 578 (579)
Q Consensus 564 ------------~--------P~~~~~Pei~a~K~ 578 (579)
+ |.+.+.||+.|++.
T Consensus 140 ~~~~~~~~g~S~~Pcse~Y~G~~pfSEPET~av~~ 174 (332)
T cd06228 140 FDPGASRSVASTDPASETFHGTAAFSEPETRNVVW 174 (332)
T ss_pred cccccccCCCCCCCCccccCCCCCCccHHHHHHHH
Confidence 1 35889999999874
No 50
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.70 E-value=5.1e-17 Score=166.94 Aligned_cols=90 Identities=24% Similarity=0.234 Sum_probs=79.7
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNP 565 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P 565 (579)
+||+|+|+|++|++|+.|+.++..+|+.|+.. .|+..+.|++++.|+||||+||||+.+ ..|.|+.|+||||||..+
T Consensus 23 ~~p~v~i~~giHg~E~ig~~~~l~~l~~L~~~~~~d~~~~~ll~~~~i~ivP~vNPdG~~~-~~R~n~~GVDLNRNfp~~ 101 (273)
T cd03862 23 KAPVLGLVGGVHGLERIGTQVLLAFLESLLERLRWDKLLQELLEKVRLVFLPLVNPVGMAL-KTRSNGNGVDLMRNAPVD 101 (273)
T ss_pred CCCEEEEEcCcCCCcHHHHHHHHHHHHHHHHhccccHHHHHHHhCCeEEEEeccCcCHHHh-cccCCCCCcccCCCCCCC
Confidence 68999999999999999999999999999973 477889999999999999999999986 469999999999999632
Q ss_pred -------------------------CCCCChhhhhhhc
Q psy17594 566 -------------------------SPVYHPSVFAARS 578 (579)
Q Consensus 566 -------------------------~~~~~Pei~a~K~ 578 (579)
.+..+||+.|+++
T Consensus 102 ~~~~~~~~~~G~~~~p~~~~Y~G~~~~~sEpEt~al~~ 139 (273)
T cd03862 102 AEDKPPFLVGGQRLSPRLPWYRGKNGAGMELEAQALCR 139 (273)
T ss_pred ccccccccccCccCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 1578899998864
No 51
>PRK10602 murein peptide amidase A; Provisional
Probab=99.67 E-value=1.2e-16 Score=160.82 Aligned_cols=103 Identities=22% Similarity=0.310 Sum_probs=86.3
Q ss_pred EEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHHH
Q psy17594 438 YVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLL 517 (579)
Q Consensus 438 ~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll 517 (579)
.....+|+|.+||+|.+|+++. .+|+.|+|+|++|++|++|..++..+++.|+
T Consensus 15 ~~~~~iG~S~egrpi~~l~~~~---------------------------~~~~~vli~agiHG~E~~g~~~~~~l~~~l~ 67 (237)
T PRK10602 15 PGTEHYGRSLLGAPLLWFPAPA---------------------------ASRESGLILAGTHGDETASVVTLSCALRTLT 67 (237)
T ss_pred ccccccccccCCCceEEEEcCC---------------------------CCCceEEEEecCCCCcHHHHHHHHHHHHhhh
Confidence 4667899999999999998764 2478899999999999999999999998886
Q ss_pred hCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCC--------------------------CCCCCCh
Q psy17594 518 TRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTN--------------------------PSPVYHP 571 (579)
Q Consensus 518 ~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~--------------------------P~~~~~P 571 (579)
.. +..+.|||++||||++.+ .|.|+.|+||||||.. +.+.+.|
T Consensus 68 ~~----------~~~~~iipvvNPDG~~~~-~R~n~~GvDLNRnFp~~~w~~~~~~~~w~~~~~~~~~~~y~G~~p~Sep 136 (237)
T PRK10602 68 PS----------LRRHHVVLAVNPDGCQLG-LRANANGVDLNRNFPAANWKEGETVYRWNSAAEERDVVLLTGDKPGSEP 136 (237)
T ss_pred hh----------ccceEEEEEECccccccc-cccCCCCCchhhcCCCcccccccccccccCCCCccchhhccCCCCCCCH
Confidence 42 223689999999999865 5899999999999974 3455689
Q ss_pred hhhhhhc
Q psy17594 572 SVFAARS 578 (579)
Q Consensus 572 ei~a~K~ 578 (579)
|+.++..
T Consensus 137 Et~al~~ 143 (237)
T PRK10602 137 ETQALCQ 143 (237)
T ss_pred HHHHHHH
Confidence 9998764
No 52
>KOG2649|consensus
Probab=99.65 E-value=7.3e-16 Score=164.91 Aligned_cols=126 Identities=22% Similarity=0.355 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q psy17594 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTD 488 (579)
Q Consensus 409 YTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~ 488 (579)
..|.+|.++|.++..++|.+ .+...||+|.+||+++++.|++.++.++ .+
T Consensus 70 h~y~~m~~~l~~~~~~~p~i---------trlYSiGkSv~Gr~L~Vle~sd~PgeH~---------------------~g 119 (500)
T KOG2649|consen 70 HNYDDLEKALKDFTKRCPNI---------TRLYSIGKSVEGRELWVIEISDRPGEHE---------------------PG 119 (500)
T ss_pred CCHHHHHHHHHHHHhhCCcc---------eeeeeccccccCceEEEEEcCCCCCccc---------------------CC
Confidence 48999999999999999864 5888999999999999999998765443 36
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhC--CChHHHHHhcccEEEEEeeeCCCeeecCC--------CCCCCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVARGH--------YRTDTRGVNL 558 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~--~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn--------~R~n~~G~DL 558 (579)
+|-+=++|.+|+.|..|-.++.+++++|+.. .|+++.+|++...+.|+|-+||||++..- -|.|+.|+||
T Consensus 120 ePEfKyv~nmHGnE~vGRElll~L~e~Lc~~y~~n~~i~~Lv~~trIHlmPSmNPDGyE~a~~~~~~~~~GR~Nang~DL 199 (500)
T KOG2649|consen 120 EPEFKYIGNMHGNEVVGRELLLRLAEYLCDNYGKDPRITQLVNNTRIHIMPSMNPDGYEIAKRGDRGWATGRNNANGVDL 199 (500)
T ss_pred CCcceeeeeccccccccHHHHHHHHHHHHHhcCCChHHHHHHhhceEEEecccCcchhhhhhcccccceecccCccccch
Confidence 7888899999999999999999999999984 78999999999999999999999998653 3899999999
Q ss_pred CCCCCC
Q psy17594 559 NRYYTN 564 (579)
Q Consensus 559 NR~w~~ 564 (579)
||+|.+
T Consensus 200 NrnFPd 205 (500)
T KOG2649|consen 200 NRNFPD 205 (500)
T ss_pred hccCcc
Confidence 999975
No 53
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=99.64 E-value=3.5e-16 Score=152.30 Aligned_cols=86 Identities=27% Similarity=0.391 Sum_probs=78.3
Q ss_pred EEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCC---CCC
Q psy17594 492 VFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNP---SPV 568 (579)
Q Consensus 492 I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P---~~~ 568 (579)
|||+|++|++|+.|++++..+++.|+... +..+.|+++++++|||++||||+..+++|.|..|+||||+|... .+.
T Consensus 1 v~i~ag~Hg~E~~g~~~~~~~~~~l~~~~-~~~~~l~~~~~i~iiP~~NPdG~~~~~~R~n~~g~DlNR~f~~~~~~~~~ 79 (196)
T cd00596 1 VLIIAGIHGNETIGVEAALALLRRLLSNY-GRDTKLLENGRLLVVPVLNPDGYEAVNWRKNANGVDLNRNFPGLWGKGPL 79 (196)
T ss_pred CEEECCcCCCcHHHHHHHHHHHHHHHHcC-cchHHHHhCCeEEEEeCcccccceeeeEEeCCCCcCccCCCCCcccCCCC
Confidence 68999999999999999999999999853 33489999999999999999999988999999999999999976 467
Q ss_pred CChhhhhhhc
Q psy17594 569 YHPSVFAARS 578 (579)
Q Consensus 569 ~~Pei~a~K~ 578 (579)
.+||++++++
T Consensus 80 ~~~e~~~~~~ 89 (196)
T cd00596 80 SEPETRALAE 89 (196)
T ss_pred CcHHHHHHHH
Confidence 9999999875
No 54
>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.64 E-value=7.7e-16 Score=155.24 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=90.8
Q ss_pred EEEEEeEEecC-CeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCCCCchHHHHHHHHHHHH
Q psy17594 438 YVRECVCYTLE-GRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFL 516 (579)
Q Consensus 438 ~~~~~Lg~S~e-GR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHpgE~~gS~v~~g~l~~L 516 (579)
+..+.+|+... |+++.++++.... ++||.|+|+|++|++|+.|+++++.+++.|
T Consensus 15 ~~~~~~g~~~~~~~pL~~l~~~~~~-------------------------~~~p~vlI~gGiHG~E~~G~~a~l~~l~~l 69 (236)
T cd06231 15 LDVREYGQLAYQSYPLYALKSRGWD-------------------------SDLPRVLITAGIHGDEPAGPLGALEFLRAA 69 (236)
T ss_pred eEEEEccccccCCeeEEEEEcCCCC-------------------------CCCCEEEEECCCCCCcHHHHHHHHHHHHHH
Confidence 67889999887 9999999875421 368999999999999999999999999888
Q ss_pred HhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhc
Q psy17594 517 LTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578 (579)
Q Consensus 517 l~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~K~ 578 (579)
.. .+++++.|+|+||+||||+.. +.|.|+.|+||||+|..++ ..||+.++.+
T Consensus 70 ~~-------~~l~~~~i~ivP~vNPdG~~~-~~R~n~~g~DLNR~F~~~~--~~~E~~al~~ 121 (236)
T cd06231 70 AL-------ELAQDVNLSVYPCINPSGFEA-ITRWNRNGIDPNRSFRSES--PSPEVRLLME 121 (236)
T ss_pred HH-------HHhcCCeEEEEECcChhHHhc-CccCCCCCccccCCCCCCC--CCHHHHHHHH
Confidence 53 378999999999999999985 5699999999999998643 4699888754
No 55
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.62 E-value=1.1e-15 Score=151.80 Aligned_cols=104 Identities=27% Similarity=0.280 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q psy17594 408 PYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFT 487 (579)
Q Consensus 408 PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~~~~~~~~e~~~~~l~p~~~~~~~~~~~ 487 (579)
|-+|.++..-|..|-- .+.-.+|.|||+|.+|+|+ .
T Consensus 1 ~~~~~~i~~~l~~~~g----------------~~~~a~S~EGR~I~~l~i~----------------------------~ 36 (240)
T cd06232 1 PLSAGQIAYELAVLPG----------------IEFAARSRQGRPVTGRYVA----------------------------G 36 (240)
T ss_pred CCCHHHHHHHHhhcCC----------------ccccccccCCCeeeEEEec----------------------------C
Confidence 4567777776665521 1235679999999999993 2
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCC--------C-----CCCCC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGH--------Y-----RTDTR 554 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn--------~-----R~n~~ 554 (579)
+||.|||+|+||+.||.|...+..+++.|+. +++++|+|+|++||||+++++ | |.++.
T Consensus 37 ~Kp~I~I~gGvHarEwig~~~al~fi~~L~~---------~~~~n~~I~P~vNPDGYe~~~~L~r~nP~~~hHaaR~~A~ 107 (240)
T cd06232 37 LDHPVVISAGQHANETSGVVGALRAAEALAA---------RPGAHFALIPLENPDGYALHERLRAEHPRHMHHAARYTAL 107 (240)
T ss_pred CCcEEEEeCCcCCCcchhHHHHHHHHHHHhc---------cCCceEEEEEeeCCcHHHhhchhhccCcccccchhhhccc
Confidence 5899999999999999999999999999985 679999999999999999884 3 88999
Q ss_pred CCCCC-CCCCC
Q psy17594 555 GVNLN-RYYTN 564 (579)
Q Consensus 555 G~DLN-R~w~~ 564 (579)
|.|+| |+|..
T Consensus 108 g~D~~fr~~~~ 118 (240)
T cd06232 108 GDDLEYREFPP 118 (240)
T ss_pred CCCcccccCCc
Confidence 99999 98874
No 56
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=99.59 E-value=5.1e-16 Score=165.97 Aligned_cols=206 Identities=22% Similarity=0.314 Sum_probs=147.1
Q ss_pred EEeccCCCCCCCCCCcceEEE-EEEEecCcceEEEEEEEecccccc-ccc----cCCcceEEEecCCcccEEccCCCeeE
Q psy17594 307 VWPKADCAGTEFENGNRTWFH-FGMKGGSALKVVKLNIVNLNRQVK-MFS----QGMAPVYRSHSTRNQWERIREKPTYS 380 (579)
Q Consensus 307 L~lrpD~~~~~~~~g~~qWFy-F~V~~~~~~~~~~f~I~N~~K~~s-ly~----~Gm~P~~~s~~~~~~W~R~~~~~~y~ 380 (579)
+-++||... ...|||| |+|.+....+.+ .|++++.... .+. .|.+.+. ...+..|.++++..
T Consensus 22 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lp~~~--- 89 (374)
T COG2866 22 LALRPDYRA-----DQEQELYLFRVLGKATEEQL--KIVDRSGAWHDALPDFEWIGGQAVA--TYPIENWFLLPDGY--- 89 (374)
T ss_pred hhcccccch-----hhhhcchhhhhhccchhhhH--hHhhhccCcchhcCchhhhhcccce--eccchhheeCCCCC---
Confidence 455666654 3579999 999987544333 3444443211 111 0111111 12345667765441
Q ss_pred ecCCEEEEEEEEEeccCCceEEEEccCCCCHHHHHHHHHHHHHhCCCCCCCCCCcceEEEEEeEEecCCeeeeEEEEecC
Q psy17594 381 YDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSH 460 (579)
Q Consensus 381 ~~~~~~tLsF~~~f~~~~d~vyfA~~~PYTYs~l~~~L~~L~~~~~~~~~~~~~~~y~~~~~Lg~S~eGR~I~lLtIts~ 460 (579)
....++|+..... +.++++|.-|++-.+.. -+..+.+|+|.+||...+++.-..
T Consensus 90 ---~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~---------------------~~~~~~~g~sv~GR~~~~i~~~~~ 143 (374)
T COG2866 90 ---PASFMTFTLAPEE--GRVEFAFFEPYSLEQHL---------------------LVELELIGRSVEGRDDPLITFPES 143 (374)
T ss_pred ---Ccccchhhhcccc--hhhHHhhcccccccccc---------------------cceeeecCccccccccceeeecCC
Confidence 2345777776553 47788888877643322 145688999999997555554432
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCcEEEEECCcCC-CCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeee
Q psy17594 461 HGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHP-GETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPML 539 (579)
Q Consensus 461 ~~~~~~~e~~~~~l~p~~~~~~~~~~~~K~~I~IsARvHp-gE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPml 539 (579)
+ ..++.|+|+|++|+ ||+...|.+.++|..+++. +...+.|++++.|++||.+
T Consensus 144 ~-------------------------~~~~~i~~~~~~H~~g~~~~~~~~~~li~r~~~~-~~~~~~lld~~~~~vvp~~ 197 (374)
T COG2866 144 N-------------------------PEHKTILITAGQHARGEKMVEWFLYNLILRYLDP-DVQVRKLLDRADLHVVPNV 197 (374)
T ss_pred C-------------------------CccceeeEecccccCccHHHHHHHHHHHHHhcCc-cchhhhhhccccEEEeccc
Confidence 1 35889999999999 9999999999999999875 6889999999999999999
Q ss_pred CCCeeecCCCCCCCCCCCCCCCCCCCCCCCChhhhhh
Q psy17594 540 NPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAA 576 (579)
Q Consensus 540 NPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~Pei~a~ 576 (579)
||||+..|+.|+|+.|+||||+|..|+...-++++-.
T Consensus 198 NpDG~~~~~lr~na~~~dLnr~~~~~~~~~~~~~~~~ 234 (374)
T COG2866 198 NPDGSDLGNLRTNANGVDLNRNFIAPNEEEGKEVYRW 234 (374)
T ss_pred CCchhhhcccccccCccchhhhccCCCcccchHHHhh
Confidence 9999999999999999999999999988877777644
No 57
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=99.50 E-value=2.3e-14 Score=138.69 Aligned_cols=79 Identities=29% Similarity=0.487 Sum_probs=69.1
Q ss_pred EEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCC--------
Q psy17594 492 VFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYT-------- 563 (579)
Q Consensus 492 I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~-------- 563 (579)
|+|+|++|++|+.|+.+++.+++.|... .++++.++||||+||||+.. .+|+|..|+||||+|.
T Consensus 1 vli~agiHG~E~~g~~~~~~l~~~l~~~-------~l~~~~i~ivP~~NPdG~~~-~~R~n~~gvDLNRnFp~~~~~~~~ 72 (178)
T cd06904 1 VLIIGGIHGDEPASVSDLEELLRILPGL-------ILRGLSWYVIPVLNPDGLLR-ATRCNANGVDLNRNFPTKDWPPGA 72 (178)
T ss_pred CEEEeccCCCCHHHHHHHHHHHHHHHHH-------hhcCCeEEEEeCcCccHHhh-CcccCCCCcChhhcCCccccccCC
Confidence 5899999999999999999999999752 26789999999999999997 6799999999999985
Q ss_pred -------CCCCCCChhhhhhhc
Q psy17594 564 -------NPSPVYHPSVFAARS 578 (579)
Q Consensus 564 -------~P~~~~~Pei~a~K~ 578 (579)
.|.+.+.||+.++..
T Consensus 73 ~~~~~~~G~~~~sepEt~al~~ 94 (178)
T cd06904 73 SRYRRYPGPKPGSEPESRALMD 94 (178)
T ss_pred CcccccCCCCCCCCHHHHHHHH
Confidence 245678899988754
No 58
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.01 E-value=1.2e-09 Score=112.94 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=61.8
Q ss_pred CcEEEEECCcCCCC-chHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCC
Q psy17594 489 KKVVFLSARVHPGE-TPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPS 566 (579)
Q Consensus 489 K~~I~IsARvHpgE-~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~ 566 (579)
.++|+|+|++|+.| ..||.++..+|+.+.. ..+..+..+.+||++||.|... ..|+|..|+||||||.+.+
T Consensus 51 ~~~l~i~sGvHG~Eg~~Gs~~~~~ll~~~~~------~~~~~~~~vi~vh~vNP~Gf~~-~~R~nedgvDLNRnf~d~~ 122 (283)
T cd06233 51 KRLLVITSGTHGVEGFCGSAIQLALLRELLP------RSLPAGVAVLLVHALNPYGFAH-LRRVNENNVDLNRNFLDFS 122 (283)
T ss_pred CcEEEEEecccCCcccchHHHHHHHHHhcch------hhccCCceEEEEeCcCHHHHhh-cccCCCCCCChhhcccccC
Confidence 45999999999999 6999999988888752 3567788999999999999974 7799999999999998754
No 59
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=98.56 E-value=1.1e-07 Score=101.77 Aligned_cols=73 Identities=25% Similarity=0.453 Sum_probs=58.4
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecC-----CCCCC-CCCCCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARG-----HYRTD-TRGVNLNRYY 562 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~G-----n~R~n-~~G~DLNR~w 562 (579)
.|.|+|+|++|++|.+|..++..+++.|.... ....| +-.+.|||++||+|.... ..|.+ ..|.||||.|
T Consensus 27 gp~v~i~agiHGdE~~G~~~~~~L~~~l~~~~--~~~~l--~G~v~ivP~~Np~g~~~~~~~~~~~R~~p~dg~dlNR~F 102 (359)
T cd06250 27 GPKVYIQASLHADELPGMLVLHHLIELLKKLE--AEGRI--LGEITLVPVANPIGLNQRLGGFHLGRFDLASGTNFNRDF 102 (359)
T ss_pred CCEEEEEeccccCchHHHHHHHHHHHHHhhhc--ccccc--CceEEEEeCcChHHHHhhccccccccccCCCCCccCcCC
Confidence 57999999999999999999999999997521 11233 447999999999999753 23544 5999999999
Q ss_pred CCC
Q psy17594 563 TNP 565 (579)
Q Consensus 563 ~~P 565 (579)
...
T Consensus 103 Pg~ 105 (359)
T cd06250 103 PDL 105 (359)
T ss_pred CCc
Confidence 863
No 60
>cd06230 M14_ASTE_ASPA_like The Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily belongs to the M14 family of metallocarboxypeptidases (MCPs), and includes ASTE, which catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) which cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.40 E-value=4.2e-07 Score=92.65 Aligned_cols=74 Identities=18% Similarity=0.089 Sum_probs=57.0
Q ss_pred EEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCCCCCCCh
Q psy17594 492 VFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHP 571 (579)
Q Consensus 492 I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P~~~~~P 571 (579)
|+|+|++|++|..|.+++..+++.|.... +-+..+.+||++||+|... +.|.+. .||||.|..-.....+
T Consensus 1 v~i~agiHG~E~~g~~~~~~l~~~~~~~~-------~l~g~v~~vp~~N~~g~~~-~~R~~~--~DLNR~fpg~~~~~~~ 70 (252)
T cd06230 1 VAVVGGVHGNEPCGVQAIRRLLAELDEGQ-------ALRGPVKLVPAANPLALEA-GQRYLD--RDLNRIFPGDPDSGTY 70 (252)
T ss_pred CEEEcccCCCcHHHHHHHHHHHHHHhhhc-------ccccEEEEEeCcCHHHHHh-CCCCCC--cCCCCCCCCCCCCCCH
Confidence 57999999999999999999999986421 2356788999999999986 446555 9999999854322355
Q ss_pred hhhh
Q psy17594 572 SVFA 575 (579)
Q Consensus 572 ei~a 575 (579)
|-..
T Consensus 71 ~~~~ 74 (252)
T cd06230 71 EDRL 74 (252)
T ss_pred HHHH
Confidence 5443
No 61
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.32 E-value=1.4e-06 Score=91.02 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=55.5
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCC-CCCCCCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDT-RGVNLNRYYTN 564 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~-~G~DLNR~w~~ 564 (579)
.|.|+|+|++|+.|..|.+++..+++.|.. ..| +=.+.+||++||.|... +.|.+. .|.||||.|..
T Consensus 24 gp~v~i~agvHG~E~~G~~~~~~l~~~l~~------~~~--~g~~~~vp~~N~~a~~~-~~R~~p~d~~dlNR~fpg 91 (293)
T cd06255 24 GPTLWLHAQVHGNEYNGTQAIVDLYRSLDP------AAL--KGRLVALPTANPTALDA-RTRMSPFDELDLNRTFPG 91 (293)
T ss_pred CCEEEEEcccCCCcHHHHHHHHHHHHhCCH------hhc--CCeEEEEeCcCHHHHHh-hcccCCCCCCCcccCCCC
Confidence 579999999999999999999999988732 223 23556899999999985 568886 89999999974
No 62
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.28 E-value=1.3e-06 Score=90.93 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=55.5
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNP 565 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P 565 (579)
.|.|+|+|++|++|..|..++..+++.|.. ..+ +-.+.+||++||.|+.. +.|.+..|.||||.|...
T Consensus 20 gp~v~i~~giHGdE~~G~~~~~~l~~~l~~------~~~--~g~v~~vp~~Np~a~~~-~~R~~~d~~dlNR~fpg~ 87 (287)
T cd06251 20 GPTLLLTAAIHGDELNGVEIIRRLLRQLDP------KTL--RGTVIAVPVVNVFGFLN-QSRYLPDRRDLNRSFPGS 87 (287)
T ss_pred CCEEEEEcCccCCchhHHHHHHHHHhcCCc------ccC--ceEEEEEeCCCHHHHHh-ccccCCCccCHhhcCCCC
Confidence 578999999999999999999988887732 112 23567899999999986 558877999999999743
No 63
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.17 E-value=3e-06 Score=88.11 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=55.8
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCC-CCCCCCCCCCCCCCCC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHY-RTDTRGVNLNRYYTNP 565 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~-R~n~~G~DLNR~w~~P 565 (579)
..|.|+|+|++|++|..|.+++..+++.|-. .. -+-...+||++||.|+..+.- +....|.||||.|...
T Consensus 16 ~gp~v~i~agvHG~E~~G~~~~~~l~~~l~~------~~--~~g~v~~vp~~N~~a~~~~~r~~~~~d~~dlNR~fpg~ 86 (288)
T cd06254 16 PGPTLAITAGVHGGEYPGIQALQKLAREIDP------AK--LSGTLIIVHVLNLSGFYARTPYIVPEDGKNLNRVFPGD 86 (288)
T ss_pred CCCEEEEEecccCCchhHHHHHHHHHHhCCc------cc--CeEEEEEEeCcCHHHHHhcCcccCCCCCCchhhcCCCC
Confidence 3578999999999999999999999988721 11 255678999999999986543 2346899999999753
No 64
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.08 E-value=3.3e-06 Score=88.34 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=59.0
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCC-CCCCCCCCCCCC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTD-TRGVNLNRYYTN 564 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n-~~G~DLNR~w~~ 564 (579)
+.|.|+|+|++|+.|.+|.+++..+++.|.... ....+.-+-.+.+||++||-|... ..|.+ ..|.||||.|..
T Consensus 18 ~gp~v~i~agvHGdE~~G~~~~~~L~~~l~~~~--~~~~~~l~g~v~~vP~~N~~a~~~-~~R~~p~d~~dlNR~Fpg 92 (298)
T cd06253 18 GEKRICIVGGIHGDELQGLYICSLLIRFLKELE--KRGPLKLNGIVDVIPSVNPLGLNL-GTRFWPTDNSDINRMFPG 92 (298)
T ss_pred CCcEEEEEccCccchHHHHHHHHHHHHHHhhhh--cccccccCceEEEEeCcCHHHHHH-hhCcCCCCCCcccccCCC
Confidence 467899999999999999999999999996421 111223377889999999999975 55655 479999999974
No 65
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=98.06 E-value=3.6e-06 Score=87.03 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=54.5
Q ss_pred cEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCC-CCCCCCCCCCCC
Q psy17594 490 KVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTD-TRGVNLNRYYTN 564 (579)
Q Consensus 490 ~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n-~~G~DLNR~w~~ 564 (579)
|.|+|+|++|++|.+|.+++..+++.|-..+ -+=...+||+.||.|...+. |.. ..|.||||.|..
T Consensus 3 p~l~i~agvHGnE~~G~~a~~~L~~~l~~~~--------~~G~~~~vp~~N~~a~~~~~-R~~~~d~~dLNR~Fpg 69 (292)
T PF04952_consen 3 PTLLITAGVHGNEYNGIEALQRLLRELDPAD--------LSGTVIIVPVANPPAFRQGT-RFVPIDGRDLNRCFPG 69 (292)
T ss_dssp -EEEEEE-SSTTBCHHHHHHHHHHHHHHGGG--------CTCEEEEEEESSHHHHHHTS-SSSTTTSSBGGGSTTH
T ss_pred CEEEEEcCcccChHHHHHHHHHHHhcchhcc--------cCCceEEEEEeCHHHHHhcc-ccCCCCCCCHHHhCCC
Confidence 6799999999999999999999999985421 35568899999999999766 655 499999999983
No 66
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.95 E-value=1.2e-05 Score=84.95 Aligned_cols=67 Identities=25% Similarity=0.226 Sum_probs=55.2
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCC-CCCCCCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDT-RGVNLNRYYTN 564 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~-~G~DLNR~w~~ 564 (579)
-|.|+|+|++|+.|.+|.+++..+++.|-. .. -+-.+.+||++||-|... +.|.+. .|.||||.|..
T Consensus 34 gp~v~I~aGiHGdE~~G~~~~~~L~~~l~~------~~--l~G~vi~vP~~Np~a~~~-~~R~~p~D~~DLNR~Fpg 101 (316)
T cd06252 34 GPTVLLTGGNHGDEYEGQIALLRLARRLDP------EE--VRGRVIILPALNFPAVQA-GTRTSPIDGGNLNRVFPG 101 (316)
T ss_pred CCEEEEEccCCCCchHHHHHHHHHHHhCCh------hh--CeEEEEEEeCCCHHHHHh-ccccCCCCCCcHHhhCCC
Confidence 468999999999999999999999988732 11 244778999999999975 568764 68999999974
No 67
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=97.71 E-value=5.9e-05 Score=80.02 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=54.9
Q ss_pred CcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCC-CCCCCCCCCCC
Q psy17594 489 KKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDT-RGVNLNRYYTN 564 (579)
Q Consensus 489 K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~-~G~DLNR~w~~ 564 (579)
-|.|+|+|++|+.|.+|..++..+++.|-. ..| +=.+.|||++||=|... +.|.+. .|.||||.|..
T Consensus 47 gp~v~i~agvHGdE~~G~~~~~~L~~~l~~------~~l--~G~v~~vP~~N~~g~~~-~~r~~p~d~~nlNR~fPG 114 (325)
T TIGR02994 47 GPTALLTGGNHGDEYEGPIALFELARTLDA------EDV--SGRIIIVPAMNYPAFRA-GTRTSPIDRGNLNRSFPG 114 (325)
T ss_pred CCEEEEEeccCCCchHHHHHHHHHHhhCCh------hhC--cEEEEEEcCCCHHHHHh-hCCCCCCCCCccCCCCCC
Confidence 478999999999999999999999998832 122 44589999999999875 446654 89999999974
No 68
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=97.69 E-value=1.7e-05 Score=81.60 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=109.0
Q ss_pred ceeeeeec-cCCCCcccccceEEEeee--CCCcc-------CcccCCCceeeeccccccCccceeEEEEEEecccccccc
Q psy17594 14 SILDFITG-SESSGGGEGIDYEFNVWP--KADCA-------GTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMF 83 (579)
Q Consensus 14 ~~~d~~~~-~~~~~~~~~~~~ef~i~~--~PD~~-------~~~~~~~~r~wf~f~~~~~~~~~~~~~~ivn~~k~~~l~ 83 (579)
++++.|++ .++.++-+.+++++-|.+ |||++ +..|-|+||-|-.++....|..+.++..+ +..
T Consensus 77 ~ll~~L~~~~d~~~~~ll~~~~~~IvP~~NPDG~~~g~~R~n~~GvDLNRnw~~p~~~s~PEt~av~~~~----~~~--- 149 (263)
T cd06234 77 GLLERLLDPDDAVARALLEKAVFYVVPNMNPDGSARGHLRTNAAGANLNREWAEPSAERSPEVFAVRQRM----EET--- 149 (263)
T ss_pred HHHHHHhhcCCHHHHHHHhcCEEEEEeeecchhhhhcCCccCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----Hhc---
Confidence 44566665 456667788899999997 99986 34578999999877766666555544322 221
Q ss_pred cccccceEeecCC--ceEEeCCCC-CChhhhHH--HHHHHHHHhhcCCCccccCcccchhhhhhcccCCCccccCCccee
Q psy17594 84 SQGMAPVYRSHST--RIFMYGNHF-QNTVDKVE--CMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGLSREGAGRVA 158 (579)
Q Consensus 84 ~~g~~p~v~s~~~--~~F~yGn~~-~~~~~~~~--~~~fp~l~s~n~~~f~~~~c~F~~~~m~~~d~~~~~~kegsgRv~ 158 (579)
.-.|..++|+|.. .+|.|||.. ++....++ ...|+..|..-+|+|. +.|.- ++.+.|.++..
T Consensus 150 ~~~~~ld~Hs~~~~py~f~~g~~~~p~~~~~l~~l~~~~~~al~~~~~~f~---~~~~y----------~~~~~g~~~~~ 216 (263)
T cd06234 150 GVDFFLDVHGDEALPYNFIAGSEGVPGWTPRLAALEARFKAALLRASPDFQ---TEHGY----------PKDAPGQANLT 216 (263)
T ss_pred CCeEEEEeCCCCCCCccEeccCCCCCCccHHHHHHHHHHHHHHHHhCcccc---ccccc----------CCCCCCchhHH
Confidence 2245566777765 699999964 33222222 3789999999999984 33442 34555555543
Q ss_pred -----hhhhcCcceeeEEEeeccccccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q psy17594 159 -----VGKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENA 216 (579)
Q Consensus 159 -----~~~~~gi~~syTlE~~y~~Gr~~n~~~p~~~d~~~~~~~~~~~~~ytp~~~e~vG~~~ 216 (579)
++...| ..+||||..|- +... + -| .-.-|+|+-++.+|+.+
T Consensus 217 ~a~~~~~~~~~-~~s~TlEmpf~-~~~~--~----p~---------~~~gw~~~r~~~lg~~~ 262 (263)
T cd06234 217 IATNWVAHRFD-CLSMTLEMPFK-DNAD--L----PD---------PEVGWSPERSKALGADV 262 (263)
T ss_pred HHHHHHHhhcC-ceEEEEEeecC-CccC--C----CC---------cccCcCHHHHHHHHHhh
Confidence 344556 69999999998 3222 0 11 12569999999999874
No 69
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=97.62 E-value=0.00025 Score=75.62 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=59.4
Q ss_pred CCcEEEEECCcCCCCc-hHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCC
Q psy17594 488 DKKVVFLSARVHPGET-PSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTN 564 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~-~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~ 564 (579)
.++++++++++|+=|- .||-+-..+|+.+. ...|.+..-+.+|=.|||=|... .-|+|-.+|||||||.+
T Consensus 50 a~~lLv~~SGtHGVEGf~GSaiQ~~~L~~~~------~~~~~~~~avllVHAlNPyGfa~-~RR~nE~NVDLNRNfld 120 (341)
T PF10994_consen 50 ASRLLVLTSGTHGVEGFAGSAIQIALLREDL------ARSLPAGVAVLLVHALNPYGFAW-LRRVNENNVDLNRNFLD 120 (341)
T ss_pred CCeEEEEEecCCcccccccHHHHHHHHHccc------ccccCCCCeEEEEEccCccccce-eeccCCcCcCcccccCc
Confidence 3669999999999997 58888888777752 35677889999999999999984 45999999999999984
No 70
>cd06256 M14_ASTE_ASPA_like_6 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.41 E-value=0.00022 Score=75.73 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=51.7
Q ss_pred cEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCCC
Q psy17594 490 KVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNP 565 (579)
Q Consensus 490 ~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~P 565 (579)
|.|+|+|++|++|.+|.++++.+++.+.. .. +..+ .++++.||-++.. +.|..-.|.||||.|...
T Consensus 35 p~v~I~aGvHGNE~~Gi~al~~ll~~~~~------~~-~~~~--~~l~i~Np~A~~~-~~R~~~d~~DLNR~Fpg~ 100 (327)
T cd06256 35 PPLFVSTLLHGNEPTGLQAVQRLLKALEA------RP-LPRS--LLLFIGNVAAALA-GVRRLDGQPDYNRCWPGP 100 (327)
T ss_pred CeEEEEccccCCcHHHHHHHHHHHHhCCh------hh-cCCc--EEEEEeCHHHHHh-CcccCCCCCCccCCCCCC
Confidence 78999999999999999999988877632 12 3344 4455799999985 557666789999999853
No 71
>PRK02259 aspartoacylase; Provisional
Probab=97.28 E-value=0.00035 Score=72.93 Aligned_cols=64 Identities=19% Similarity=0.126 Sum_probs=48.9
Q ss_pred cEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCC
Q psy17594 490 KVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTN 564 (579)
Q Consensus 490 ~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~ 564 (579)
+.|+|+|++|++|.+|.++++.+++.+... . +..+ -.++|+.||.++..+ .|.. ..||||.|..
T Consensus 3 ~~v~i~aGvHGnE~~Gv~~v~~l~~~~~~~------~-~~g~-~i~~~i~Np~A~~~~-~Ry~--~~DLNR~Fpg 66 (288)
T PRK02259 3 NRVAIVGGTHGNEITGIYLVKKWQQQPNLI------N-RKGL-EVQTVIGNPEAIEAG-RRYI--DRDLNRSFRL 66 (288)
T ss_pred cEEEEEcCccCChhHHHHHHHHHHhccccc------c-cCcc-EEEEEeeCHHHHHhC-CCCC--cccCCCCCCC
Confidence 469999999999999999998888775321 1 2233 468889999999864 4643 3899999984
No 72
>PRK05324 succinylglutamate desuccinylase; Provisional
Probab=97.27 E-value=0.00042 Score=73.69 Aligned_cols=67 Identities=24% Similarity=0.262 Sum_probs=51.3
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTN 564 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~ 564 (579)
..|.|+|+|++|++|+.|.+++..+++.|... .+.-... .++|+.||.+... +.|.. ..||||.|..
T Consensus 46 ~gp~v~IsaGvHGNE~~Gi~~l~~Ll~~l~~~------~~~~~~~-v~~i~~Np~A~~~-~~R~v--d~DLNR~FpG 112 (329)
T PRK05324 46 STKALVLSAGIHGNETAPIELLDQLVRDLLAG------ELPLRAR-LLVILGNPPAMRA-GKRYL--DEDLNRLFGG 112 (329)
T ss_pred CCCeEEEECCcccCcHHHHHHHHHHHHhhhcc------ccccCce-EEEEecCHHHHHh-CcccC--CCCcccCCCC
Confidence 45689999999999999999999999988642 1212233 4556899999985 44644 4799999984
No 73
>TIGR03242 arg_catab_astE succinylglutamate desuccinylase. Members of this protein family are succinylglutamate desuccinylase, the fifth and final enzyme of the arginine succinyltransferase (AST) pathway for arginine catabolism. This model excludes the related protein aspartoacylase.
Probab=97.21 E-value=0.00033 Score=74.19 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=51.0
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTN 564 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~ 564 (579)
.-|.|+|+|++|++|..|.+++..+++.|... .++-...+.++ +.||.++.. +.|.. ..||||.|..
T Consensus 40 ~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~------~~~~~~~l~~i-~~Np~A~~~-~~R~~--~~DLNR~FpG 106 (319)
T TIGR03242 40 PQKSLVISAGIHGNETAPIEILEQLLGDIAAG------KLPLRVRLLVI-LGNPPAMRT-GKRYL--HDDLNRMFGG 106 (319)
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHhhhhhc------cccCCceEEEE-EcCHHHHHh-CcccC--CCCccCCCCC
Confidence 34678999999999999999999999988542 23344545444 789999985 55643 4799999983
No 74
>cd06909 M14_ASPA Aspartoacylase (ASPA) belongs to the Succinylglutamate desuccinylase/aspartoacylase subfamily of the M14 family of metallocarboxypeptidases. ASPA (also known as aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.18 E-value=0.00055 Score=71.29 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=46.8
Q ss_pred EEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCC
Q psy17594 491 VVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTN 564 (579)
Q Consensus 491 ~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~ 564 (579)
.|+|+|++|++|..|.++++.+++.+... .+..+ ..++|+.||.++.. +.|.. ..||||.|..
T Consensus 2 ~v~I~aGvHGnE~~Gv~~v~~l~~~~~~~-------~~~~~-~v~~~i~Np~A~~~-~~Ry~--d~DLNR~Fpg 64 (282)
T cd06909 2 RVAIVGGTHGNELTGVYLVKKWLQQPELI-------QRPSL-EVHPVIANPRAVEA-CRRYI--DTDLNRCFTL 64 (282)
T ss_pred eEEEEcCccCChHHHHHHHHHHHhccccc-------ccCCe-EEEEEecCHHHHHh-CCccC--CCCCCCCCCC
Confidence 58999999999999999998777765321 12222 24555679999875 45754 5899999985
No 75
>cd03855 M14_ASTE Peptidase M14 Succinylglutamate desuccinylase (ASTE, also known as N-succinyl-L-glutamate amidohydrolase, N2-succinylglutamate desuccinylase, and SGDS; EC 3.5.1.96) belongs to the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily of the M14 family of metallocarboxypeptidases. This group includes succinylglutamate desuccinylase that catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. It hydrolyzes N-succinyl-L-glutamate to succinate and L-glutamate.
Probab=97.09 E-value=0.00086 Score=71.12 Aligned_cols=67 Identities=28% Similarity=0.292 Sum_probs=50.7
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTN 564 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~ 564 (579)
.-|.|+|+|++|++|..|.+++..+++.|... .++-... .++|+.||.++.. ..|.. ..||||.|..
T Consensus 41 ~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~------~l~~~~~-v~~~~~Np~A~~~-~~R~~--d~DLNR~FpG 107 (322)
T cd03855 41 ATKAIVISAGVHGNETAPIEILNQLIKDLLAG------ELPLAHR-LLFIFGNPPAMRA-GERFV--DENLNRLFSG 107 (322)
T ss_pred CCCeEEEEccccCCchhHHHHHHHHHHhhhhc------cccCCeE-EEEEeeCHHHHHh-CcccC--CCCccCCCCC
Confidence 45678999999999999999999999998642 1222232 4666899999985 44533 3699999984
No 76
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.99 E-value=0.0008 Score=69.61 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=47.2
Q ss_pred cEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCC-----CCCCCCCCCC
Q psy17594 490 KVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTR-----GVNLNRYYTN 564 (579)
Q Consensus 490 ~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~-----G~DLNR~w~~ 564 (579)
|.|+|+|+||++|.+|..++..+++. ++ ..|.-+.+ ++ +.||-++..+. |.+.. +.||||.|..
T Consensus 1 P~v~isagvHGnE~~Gi~al~~l~~~-----~~--~~l~G~li--~~-~~N~~A~~~~~-~~~p~~~R~~~~dLNR~Fpg 69 (272)
T cd06910 1 PHVMINALVHGNEICGAIALDALLRE-----GL--RPRRGRLT--LA-FANVAAYARFD-PNNPTASRFVDEDMNRVWSP 69 (272)
T ss_pred CEEEEEcCcccChHHHHHHHHHHHhC-----cc--cccCCCEE--EE-EECHHHHHhcc-cCCCcccccCCCCcCCCCCC
Confidence 57999999999999999999988863 11 22444433 34 79999987544 44443 7899999973
No 77
>COG3608 Predicted deacylase [General function prediction only]
Probab=96.96 E-value=0.0012 Score=69.89 Aligned_cols=67 Identities=27% Similarity=0.335 Sum_probs=56.2
Q ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCC-CCCCCCCCCC
Q psy17594 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDT-RGVNLNRYYT 563 (579)
Q Consensus 488 ~K~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~-~G~DLNR~w~ 563 (579)
.-|.++|+|++|++|-+|..++..+|+.|-.. + =.=.++|||.+||=+.. .++|.+. .+.||||+|.
T Consensus 47 ~gp~~~l~ag~HGdEl~G~~al~~Li~~L~~a-----~---i~GtV~iVP~aN~~a~~-~~~R~~p~d~~N~NR~fP 114 (331)
T COG3608 47 PGPSVLLQAGVHGDELPGVIALRRLIPALDPA-----D---ISGTVIIVPIANPPAFE-AQGRFSPGDDTNLNRAFP 114 (331)
T ss_pred CCCEEEEEecccccccchHHHHHHHHHhcCHh-----h---cCceEEEEeccCHHHHH-hhcccCCCCCCcccccCC
Confidence 46789999999999999999999999998421 1 24568999999999988 4667665 9999999998
No 78
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=90.09 E-value=0.24 Score=51.48 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=71.3
Q ss_pred cccceEEEeee--CCCcc------------CcccCCCceeeec-cccccCc-cc----------eeEEEEEEeccccccc
Q psy17594 29 EGIDYEFNVWP--KADCA------------GTEFENGNRTWFH-FGMKGGS-AL----------KVVKLNIVNLNRQVKM 82 (579)
Q Consensus 29 ~~~~~ef~i~~--~PD~~------------~~~~~~~~r~wf~-f~~~~~~-~~----------~~~~~~ivn~~k~~~l 82 (579)
+.+++++-|.| |||+. +..|-|+||-|-+ |...+.. +. ..-...|+++.++.
T Consensus 96 lL~~~~i~ivP~~NPDG~~~~~~~~~~wR~N~~GVDLNRNf~~~w~~~~~~~~~~~y~G~~~~sEpEt~av~~~~~~~-- 173 (272)
T cd06227 96 ILDNFDLKIIPNENPDGRKKVESGNYCLRENENGVDLNRNYGADWGFKEDDYEDEEYSGPAPFSEPETRVLRDLLTSF-- 173 (272)
T ss_pred HHhcCcEEEEeccCCchheeEeccCcccccCCccccccccCCcccccCCCCccccccCCCCCCCcHHHHHHHHHHHhC--
Confidence 55777888876 99985 3347788999853 3322211 00 11111122222221
Q ss_pred ccccccceEeecCCc-eEE--eCCCCCCh--hhhHHHHHHHHHHhhcCCCccccCcccchhhhhhcccCCCccccCCcce
Q psy17594 83 FSQGMAPVYRSHSTR-IFM--YGNHFQNT--VDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGLSREGAGRV 157 (579)
Q Consensus 83 ~~~g~~p~v~s~~~~-~F~--yGn~~~~~--~~~~~~~~fp~l~s~n~~~f~~~~c~F~~~~m~~~d~~~~~~kegsgRv 157 (579)
.+.-.+.-|+.| ..+ ||...+.. .......++-.+...+.+.|.+.++.-.. +-...|+.+.
T Consensus 174 ---~~~~~i~~Hs~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~~~~~----------~Y~a~G~s~D 240 (272)
T cd06227 174 ---SPDVFLSVHSGTLALFTPYAYKKEQPEPNLAEDMRILLLISNKHCPRCQVGSAGKLV----------GYLAHGTSMD 240 (272)
T ss_pred ---CCeEEEEeccCCCEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCceecCccce----------eecCCCCHHH
Confidence 112233445542 222 35443221 11122244555555677777776544221 1357899999
Q ss_pred ehhhhcCcceeeEEEee
Q psy17594 158 AVGKITGLIRSYTLECN 174 (579)
Q Consensus 158 ~~~~~~gi~~syTlE~~ 174 (579)
.+|...||.++||+|.-
T Consensus 241 way~~~gip~s~t~EL~ 257 (272)
T cd06227 241 YMYDVLKVPYSFTFEIY 257 (272)
T ss_pred HHhhcCCCcEEEEEEcc
Confidence 99988899999999987
No 79
>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]
Probab=89.32 E-value=0.13 Score=53.43 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=43.7
Q ss_pred EEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecCCCCCCCCCCCCCCCCCC
Q psy17594 491 VVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTN 564 (579)
Q Consensus 491 ~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~Gn~R~n~~G~DLNR~w~~ 564 (579)
.++|+|++|++|+.+..++..++..+....-|.+-++ .+=+=||--...|- | -.-.||||.|..
T Consensus 45 ~lvIsaGiHGNEtapvEll~kl~~~~~ag~~p~a~r~-------L~ilgNP~Ai~~gk-R--YieqDlNR~F~g 108 (324)
T COG2988 45 SLVISAGIHGNETAPVELLDKLQQKISAGQLPLAWRC-------LVILGNPPAIAAGK-R--YIEQDLNRMFGG 108 (324)
T ss_pred ceEEEecccCCccCcHHHHHHHHhhhhhcccCcceeE-------EEEecCcHHHHhch-H--HHhhhHHHHhCC
Confidence 6999999999999999999999999887544422211 22245665444331 1 234699999953
No 80
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=88.95 E-value=0.089 Score=53.82 Aligned_cols=146 Identities=13% Similarity=0.122 Sum_probs=76.9
Q ss_pred ceeeeeeccCCCCcccccceEEEeee--CCCcc-------CcccCCCceeeeccccccCccceeEEEEEEeccccccccc
Q psy17594 14 SILDFITGSESSGGGEGIDYEFNVWP--KADCA-------GTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFS 84 (579)
Q Consensus 14 ~~~d~~~~~~~~~~~~~~~~ef~i~~--~PD~~-------~~~~~~~~r~wf~f~~~~~~~~~~~~~~ivn~~k~~~l~~ 84 (579)
.+++.|.+..+.++-+.+++++-|.| |||++ +..+.|+||.|..++- +-.+. +.++.+....-.
T Consensus 73 ~~~~~l~~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~wR~N~~GvDLNRnw~~~se---pEt~a----~~~~~~~~~~~~ 145 (244)
T cd06237 73 AFIETLLSDSELAKKFRAKYNVLLVPNMNPDGVDLGHWRHNANGIDLNRDWSNFNQ---PETRA----IRDYLVRLVKEG 145 (244)
T ss_pred HHHHHHHhCCHHHHHHHHhCEEEEEEeeCcchhhcCCccCCCCCcCCCCCCCCCCC---HHHHH----HHHHHHHHhccC
Confidence 34555665555445567788888886 99988 3457899999975542 11111 122211100001
Q ss_pred ccccceEeecCC-ceEEeCCCCCChhhhHHHHHHHHHHhhcCCCccccCcccchhhhhhcccCCCccccCCcceehhhhc
Q psy17594 85 QGMAPVYRSHST-RIFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGLSREGAGRVAVGKIT 163 (579)
Q Consensus 85 ~g~~p~v~s~~~-~~F~yGn~~~~~~~~~~~~~fp~l~s~n~~~f~~~~c~F~~~~m~~~d~~~~~~kegsgRv~~~~~~ 163 (579)
..+...|.-|+. ..++|+...+ .....-.+..-.+-+++.+.-.|.-.+-.. ...-.|+.+=-++...
T Consensus 146 ~~~~~~id~Hs~~~~i~~~~~~~-~~~~~p~~~~~~~~~l~~~~~~Y~~~~~~~----------~~~~~g~~~Dw~~~~~ 214 (244)
T cd06237 146 GKIVFALDFHSTWHDVFYTMPED-YKLQFPGFVADWLKELDKRILDYKVNNRSG----------SSPDRGVSKQYFADEH 214 (244)
T ss_pred CCEEEEEEeccCCcceEecCCCC-CCcccchHHHHHHHHhcCcCCCceeccccC----------cccCCCcHHHHHHHhC
Confidence 123334556665 4566665321 111111122233455555543343332221 1223466667777778
Q ss_pred CcceeeEEEeecccc
Q psy17594 164 GLIRSYTLECNYNTG 178 (579)
Q Consensus 164 gi~~syTlE~~y~~G 178 (579)
|+. +||+|+..++-
T Consensus 215 ~~~-~~T~E~g~~~~ 228 (244)
T cd06237 215 GAH-AITYEVGDNTP 228 (244)
T ss_pred CCc-EEEEecCCCCh
Confidence 987 99999977753
No 81
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=88.88 E-value=0.019 Score=59.14 Aligned_cols=151 Identities=15% Similarity=0.075 Sum_probs=79.4
Q ss_pred cccceeeeeec--cCCCCcccccceEEEeee--CCCcc---------------CcccCCCceeeeccccccCc------c
Q psy17594 11 QLSSILDFITG--SESSGGGEGIDYEFNVWP--KADCA---------------GTEFENGNRTWFHFGMKGGS------A 65 (579)
Q Consensus 11 ~~~~~~d~~~~--~~~~~~~~~~~~ef~i~~--~PD~~---------------~~~~~~~~r~wf~f~~~~~~------~ 65 (579)
.+-.+++.|++ .++-.+-+.+++++-|+| |||++ +..+.|+||.|... |+.. .
T Consensus 65 ~~l~~~~~L~~~~~~~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~w~~~R~n~~GvDlNRnf~~~--w~~~~~~~~~~ 142 (279)
T PF00246_consen 65 ALLYLIEELLSGYDDPEVKELLDNVVIYIIPMVNPDGYEYGTSGDRGWRKNRSNANGVDLNRNFPYQ--WNEEGSSSNPC 142 (279)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHEEEEEES-SSHHHHHHHHHT-TTCCSTSSBTTS--GGGSSSSS--TTSSSSBSSTT
T ss_pred HHHHHHHHhhccccchhhhhhcccceEEEEeeecccceeeeeecccccccccccccccccccccCcc--cccccccCCCC
Confidence 34456666776 455555678889999997 99976 22467888888654 2111 0
Q ss_pred ----------ceeEEEEEEecccccccccccccceEeecCCce-EEeCCCC-CChhhhHHH----HHHHHHHhhcCC--C
Q psy17594 66 ----------LKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRI-FMYGNHF-QNTVDKVEC----MLLAKIMSINSP--H 127 (579)
Q Consensus 66 ----------~~~~~~~ivn~~k~~~l~~~g~~p~v~s~~~~~-F~yGn~~-~~~~~~~~~----~~fp~l~s~n~~--~ 127 (579)
....-..|+++-++.+. -+..++|++...+ |.||... ....+.-.- ..+++.+..+.. .
T Consensus 143 ~~~y~g~~~~sepEt~al~~~~~~~~~---~~~id~H~~~~~~~~p~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~ 219 (279)
T PF00246_consen 143 SETYRGPAPFSEPETRALRNLIQDWNP---DFFIDFHSGGNAILYPYGYSYDEPPPDADELRSLARAFAEALGSMSRGQN 219 (279)
T ss_dssp STTB--SSTTTSHHHHHHHHHHHHTTE---EEEEEEEESSSEEEESESSSSTSSTTTHHHHHHHHHHHHHHHHCHTTTTT
T ss_pred CcccCCCcchhhhHHHHHHHHHhhcce---eEEEeccccccceeeecccccccCCchhhhhhHHHHHHHHHhhhcccccc
Confidence 01111122223222111 3344456665544 6788643 211221112 344444444333 1
Q ss_pred c-cccCcccchhhhhhcccCCCccccCCcceehhhhcCcceeeEEEeecc
Q psy17594 128 F-HFHACNFTERIMYLRDRRDGLSREGAGRVAVGKITGLIRSYTLECNYN 176 (579)
Q Consensus 128 f-~~~~c~F~~~~m~~~d~~~~~~kegsgRv~~~~~~gi~~syTlE~~y~ 176 (579)
| .+...++. ..... .|+.+-.+|...|+..+||+|+...
T Consensus 220 y~~~~~~~~~---------~~~~~-~G~~~D~~~~~~g~~~~~t~E~~~~ 259 (279)
T PF00246_consen 220 YDSYGITNGD---------NWYPA-SGSSDDYAYYHHGIPFSFTLELGCC 259 (279)
T ss_dssp BSEEEEEHHH---------HTTTT-SSSHHHHHHHHTTSSEEEEEEESSS
T ss_pred ccccCCcccc---------ccccc-ccccceeehhhcCCcEEEEEEeCCC
Confidence 1 11111111 01122 3899999998889999999999988
No 82
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=34.05 E-value=19 Score=37.63 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=18.2
Q ss_pred cCCcceehhhhcCcceeeEEEeecc
Q psy17594 152 EGAGRVAVGKITGLIRSYTLECNYN 176 (579)
Q Consensus 152 egsgRv~~~~~~gi~~syTlE~~y~ 176 (579)
.|+.-=-+|...|+..+||+|+...
T Consensus 240 ~G~~~Dw~y~~~~~~~~~t~El~~~ 264 (294)
T cd03860 240 SGGSDDWAYGVAGIPYSYTLELRDT 264 (294)
T ss_pred CCchhhhhhccCCCcEEEEEEecCC
Confidence 4455555666667889999999765
No 83
>smart00631 Zn_pept Zn_pept.
Probab=31.83 E-value=19 Score=37.23 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.3
Q ss_pred cCCcceehhhhcCcceeeEEEeecc
Q psy17594 152 EGAGRVAVGKITGLIRSYTLECNYN 176 (579)
Q Consensus 152 egsgRv~~~~~~gi~~syTlE~~y~ 176 (579)
.|+..--+|...||..+||+|+.-.
T Consensus 237 ~G~~~D~~~~~~gi~~~~t~El~~~ 261 (277)
T smart00631 237 SGGSDDWAYGTLGIPFSFTLELRDD 261 (277)
T ss_pred CCchhhhhhccCCCcEEEEEEecCC
Confidence 6888889988889999999999887
No 84
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=26.14 E-value=44 Score=35.28 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=23.1
Q ss_pred ccccCCcceehhhhcCcceeeEEEeecc
Q psy17594 149 LSREGAGRVAVGKITGLIRSYTLECNYN 176 (579)
Q Consensus 149 ~~kegsgRv~~~~~~gi~~syTlE~~y~ 176 (579)
-...|+..=-+|..+|+..+||+|.--.
T Consensus 247 y~~~G~~~D~~y~~~gi~~~~t~El~~~ 274 (304)
T cd06248 247 YQTTGSSVDWVYHVAGAAWSYQLELRDT 274 (304)
T ss_pred ccCCCCcchhhhccCCCcEEEEEEeCCC
Confidence 3457888888898889999999999654
No 85
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=24.01 E-value=32 Score=27.22 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=9.8
Q ss_pred eeEEE--eeccccccccc
Q psy17594 168 SYTLE--CNYNTGRIVNV 183 (579)
Q Consensus 168 syTlE--~~y~~Gr~~n~ 183 (579)
.|||+ |..+.|.+.+.
T Consensus 13 ~YTLk~~cp~cG~~T~~a 30 (53)
T PF04135_consen 13 VYTLKDKCPPCGGPTESA 30 (53)
T ss_dssp EEESSSBBTTTSSBSEES
T ss_pred cEeCCCccCCCCCCCcCC
Confidence 68887 66664445533
No 86
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=21.50 E-value=1.4e+02 Score=29.70 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=29.7
Q ss_pred cEEEEECCcCCCCchHHHHHHHHHHHHHhCCChHHHHHhcccEEEEEeeeCCCeeecC
Q psy17594 490 KVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARG 547 (579)
Q Consensus 490 ~~I~IsARvHpgE~~gS~v~~g~l~~Ll~~~d~~a~~Lr~~~vf~IVPmlNPDGv~~G 547 (579)
|.=++.|++|+.|+-.+ ..+|+.|..+ + ..+=.+.|+| |..+|-..+
T Consensus 7 p~rLFvgGlHG~Egk~t---~~iL~~l~~~-~------~~~G~l~i~p-lv~~~kYiS 53 (193)
T PF09892_consen 7 PKRLFVGGLHGDEGKDT---SPILKRLKPN-D------FNNGNLIIIP-LVENSKYIS 53 (193)
T ss_pred ceEEEEeeccCcchhhH---HHHHHHhCcc-c------ccCceEEEEe-CCCCCCcee
Confidence 66678899999999633 3344455432 1 1225688999 666666544
Done!