RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17594
(579 letters)
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 153 bits (387), Expect = 2e-41
Identities = 54/276 (19%), Positives = 94/276 (34%), Gaps = 50/276 (18%)
Query: 302 DYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVY 361
+ + D + + WFHF ++G + +VN + +
Sbjct: 33 PRRIRLAIRPDL-----ASQHFQWFHFKVEGMAPATEHCFTLVNAGQSAYSHAWSGYQAV 87
Query: 362 RSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNL 421
S+ +W R+ YD + +S FA+ PYS
Sbjct: 88 ASYD-GERWFRVP----SQYDADGLHFQLEPE----ESEVRFAYFEPYSRERHARL---- 134
Query: 422 DAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATC 481
+ R V +++GR ++LL + H
Sbjct: 135 -------VERALGIEGVERLAVGTSVQGRDIELLRVRRHP-------------------- 167
Query: 482 RPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNP 541
+++ A+ HPGE + + M G+I L DD L + ++P +NP
Sbjct: 168 -----DSHLKLWVIAQQHPGEHMAEWFMEGLIERLQRPDDTEMQRLLEKADLYLVPNMNP 222
Query: 542 DGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAAR 577
DG G+ RT+ G +LNR + PS P V+ +
Sbjct: 223 DGAFHGNLRTNAAGQDLNRAWLEPSAERSPEVWFVQ 258
Score = 46.7 bits (110), Expect = 1e-05
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 11/128 (8%)
Query: 32 DYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVY 91
+ + D + + WFHF ++G + +VN + +
Sbjct: 33 PRRIRLAIRPDL-----ASQHFQWFHFKVEGMAPATEHCFTLVNAGQSAYSHAWSGYQAV 87
Query: 92 RSHSTR------IFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDR 145
S+ + ++ E + S H I +
Sbjct: 88 ASYDGERWFRVPSQYDADGLHFQLEPEESEVRFAYFEPYSRERHARLVERALGIEGVERL 147
Query: 146 RDGLSREG 153
G S +G
Sbjct: 148 AVGTSVQG 155
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 152 bits (384), Expect = 4e-41
Identities = 63/277 (22%), Positives = 99/277 (35%), Gaps = 51/277 (18%)
Query: 302 DYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVY 361
+ + + D WF+F + K LNI+N +
Sbjct: 39 PDDIQLAIRPDA-----GGEFYQWFNFRFEATIG-KTYTLNILNAGGASYLKGWEDYQAV 92
Query: 362 RSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNL 421
S R W R+ + Y ++S + A+ PYSY +
Sbjct: 93 AS-YDRQTWFRLPTE----YKDGKLSISVELD----CEAIQIAYFTPYSYERHLDLISA- 142
Query: 422 DAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATC 481
E + TL+GR + L+ +
Sbjct: 143 ----------VQLHPLVSTEHLGLTLDGRDMTLVKVGDDDP------------------- 173
Query: 482 RPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNP 541
KK ++++AR HPGET + +++ G++N LL D P + L F I+P +NP
Sbjct: 174 ------SKKSIWITARQHPGETMAEWLVEGLLNQLLDNDCPTSKALLDKANFYIVPNMNP 227
Query: 542 DGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578
DG RGH RT+ G NLNR + PS P V+ +
Sbjct: 228 DGSVRGHLRTNAVGANLNREWQTPSLERSPEVYYVVN 264
Score = 39.4 bits (91), Expect = 0.002
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 9/130 (6%)
Query: 32 DYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVY 91
+ + + D WF+F + K LNI+N +
Sbjct: 39 PDDIQLAIRPDA-----GGEFYQWFNFRFEATIG-KTYTLNILNAGGASYLKGWEDYQAV 92
Query: 92 RS-HSTRIFMYGNHFQNTVDKVECMLLAKIMSINSPHFHFHACNFTERIMYLRDRRDGLS 150
S F +++ + L + + I +F ++ ++ +S
Sbjct: 93 ASYDRQTWFRLPTEYKDGKLSISVELDCEAIQIA--YFTPYSYERHLDLISAVQLHPLVS 150
Query: 151 REGAGRVAVG 160
E G G
Sbjct: 151 TEHLGLTLDG 160
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 137 bits (346), Expect = 8e-36
Identities = 58/281 (20%), Positives = 95/281 (33%), Gaps = 52/281 (18%)
Query: 302 DYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVY 361
+ + D + WF+F + G + V + N N
Sbjct: 41 ADAIRLRVRGDN-----RSEFAQWFYFRLTGARGERCV-MTFENANDCAYPAGWRDYRAV 94
Query: 362 RSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFNL 421
S+ N + YDG + T+ ++A+ PYS L +
Sbjct: 95 ASYDRVNWFRVPTS-----YDGQMLTIDHTPE----FDSIHYAYFEPYSEERHSEFLGAV 145
Query: 422 DAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATC 481
+ T+EGR + L+ + +
Sbjct: 146 QQ-----------MPQASVVELGRTVEGRPMSLVVLGTPD-------------------- 174
Query: 482 RPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT----RDDPIASLLRKMYLFKIIP 537
+ KK V++ AR HPGE+ + + + G++ L+ DP+A L F I+P
Sbjct: 175 --EAGAAKKKVWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVP 232
Query: 538 MLNPDGVARGHYRTDTRGVNLNRYYTNPSPVYHPSVFAARS 578
+NPDG G+ RT+ G NLNR + P P V R
Sbjct: 233 NMNPDGSVHGNLRTNAAGANLNREWMEPDAERSPEVLVVRD 273
Score = 34.4 bits (78), Expect = 0.088
Identities = 13/115 (11%), Positives = 29/115 (25%), Gaps = 15/115 (13%)
Query: 32 DYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVY 91
+ + D + WF+F + G + V + N + G
Sbjct: 41 ADAIRLRVRGDN-----RSEFAQWFYFRLTGARGERCV---MTFENANDCAYPAGW---- 88
Query: 92 RSHSTRIFMYGNHFQNTVDKVECMLLAKIMSINSPHFH---FHACNFTERIMYLR 143
R + ++ + +L + H F + +L
Sbjct: 89 RDYRAVASYDRVNWFRVPTSYDGQMLTIDHTPEFDSIHYAYFEPYSEERHSEFLG 143
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 73.2 bits (179), Expect = 1e-14
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 8/127 (6%)
Query: 450 RRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVM 509
R LL I + P P + + +SA H E+ +
Sbjct: 26 RFYSLLAIETERLGLGSKILGQAGHHPLYLLQSPGQKAGLPNLLISAGFHGEESAGPW-- 83
Query: 510 NGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPSPVY 569
G+++FL + L K ++P++NP G A+GH R + G N NR + +
Sbjct: 84 -GLLHFL----SQLDGELFKRVNLSVLPLVNPTGFAKGH-RFNELGENPNRGFFIENGKA 137
Query: 570 HPSVFAA 576
P +
Sbjct: 138 KPGADTS 144
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 65.2 bits (158), Expect = 7e-12
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARG 547
D + +S+ H E + M ++FL + L + ++P++NP G G
Sbjct: 65 DLPSLLISSGFHGEEAAGPWGM---LHFL----RGLQPALFERVNLSLLPLVNPTGFKAG 117
Query: 548 HYRTDTRGVNLNRYYTNPSPVYHPSVFAA 576
H R + G N NR +T + P+ +
Sbjct: 118 H-RFNRFGENPNRGFTLENGKPTPNEHTS 145
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 2e-07
Identities = 81/507 (15%), Positives = 134/507 (26%), Gaps = 175/507 (34%)
Query: 3 LSTLISIKQLSSILDFITGSESSGGGEGIDYEFNVWP-KADCAGTEF------ENGNRTW 55
L + KQ + F+ I+Y+F + P K + E +R +
Sbjct: 67 LFWTLLSKQEEMVQKFV------EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 56 FHFGMKGGSALKVVKLNIV-------------NLNRQVKMFSQGM---------APVYRS 93
K N+ L + G+ V S
Sbjct: 121 -------NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 94 HSTRIFMYGNHF------QNTVDKVECML--LAKIMSINSPHFHFHACNFTERIMYLRDR 145
+ + M F N+ + V ML L + N H+ N RI ++
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 146 -RDGLSREGAGR-------VAVGKITGLIRSYTLECNY-NTGRIVNVVPPSSRDPGKRSN 196
R L + V K ++ L C T R V ++
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKA---WNAFNLSCKILLTTRFKQVT--DFLSAATTTH 288
Query: 197 LTLVPPKYTPALFEEMGENAQDITLALWV-VFVSNLP-----------SYIGETFRTVRL 244
++L T + + + L ++ +LP S I E+ R
Sbjct: 289 ISLDHHSMT---LTP--DEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 245 TVEKF---------NVIES--RVLTGE--QHLWQELSYSMELSTLISIKQLSSILDFITG 291
T + + +IES VL + ++ LS S I LS ++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLS-LI----- 395
Query: 292 SESSGGGEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVK 351
W + +VN K
Sbjct: 396 ----------------WFDVIKSDVM------------------------VVVN-----K 410
Query: 352 MFSQGMAPVYRSHSTRNQWERIREKPTYSYDGSVFTLSFK-------HR-ITD----TKS 399
+ + E+ ++ T S L K HR I D K+
Sbjct: 411 LHKYSLV------------EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 400 FTYFAFTYP----YSYSELQTHLFNLD 422
F P Y YS + HL N++
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Score = 46.0 bits (108), Expect = 3e-05
Identities = 84/585 (14%), Positives = 165/585 (28%), Gaps = 209/585 (35%)
Query: 77 NRQVKMF-SQGMAPVY-------------RSHSTRIFM-YGNHFQNTVDKVECMLLAKIM 121
V+ F + + Y S TR+++ + N + AK
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-----VFAK-Y 129
Query: 122 SINSPHFHFHACNFTERIMYLRDRRDGLSREG-AGRVAVGKITGL----IRSYTLECNYN 176
+++ + + ++ LR + + +G G GK T + SY ++C +
Sbjct: 130 NVSRLQPYL---KLRQALLELRPAK-NVLIDGVLG---SGK-TWVALDVCLSYKVQCKMD 181
Query: 177 TGRI--VNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMGENAQDITLALWVVFVSNLPSY 234
+I +N+ + +P EM + L N S
Sbjct: 182 -FKIFWLNL--------KNCN---------SPETVLEMLQK-------LLYQIDPNWTSR 216
Query: 235 IGETFRTVRLTVEKFNVIESRVLTGEQHLWQELSYSMELSTLISIKQLSSILDFITGSES 294
+ ++L + + I++ + + L + Y + L+ +L
Sbjct: 217 -SDHSSNIKL---RIHSIQAEL----RRLLKSKPYE---NCLL-------VLL------- 251
Query: 295 SGGGEGIDYEFNVW-PKA---------------DCAGTEFENGNRTWFHFGMKGGSA--- 335
NV KA T+F + T H + S
Sbjct: 252 -----------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT-THISLDHHSMTLT 299
Query: 336 --------LKVVKLNIVNLNRQVKM---FSQGM-APVYRSHSTR-NQWERIR-EKPTYSY 381
LK + +L R+V + A R + W+ + +K T
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 382 DGSVFTLS---FKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPP-------NEQP 431
+ S+ L ++ F + +F A P +
Sbjct: 360 ESSLNVLEPAEYRKM------FDRLS-------------VFPPSAHIPTILLSLIWFDVI 400
Query: 432 NPDDIYYVRECVCYTLEGRRVDLLTISSHHG-----ITNVSEPRLPHLFPEDATCRPKKF 486
D + V + Y+L ++ TIS + +E L H +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-H----------RSI 449
Query: 487 TDKKVVFLSARVHPGETPSSFVMNGVI-NFL---LTRDDPI--ASLLRKMYL---F---K 534
D + + + ++ + + L + +L R ++L F K
Sbjct: 450 VDH---YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 535 IIPMLNPDGVARGHYRTDTRGVNLN-----RYY----TNPSPVYH 570
I D A G LN ++Y + P Y
Sbjct: 507 IR----HDSTAWN-----ASGSILNTLQQLKFYKPYICDNDPKYE 542
Score = 35.6 bits (81), Expect = 0.048
Identities = 27/206 (13%), Positives = 53/206 (25%), Gaps = 71/206 (34%)
Query: 407 YPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNV 466
Y + S ++T QP+ Y I + N
Sbjct: 91 YKFLMSPIKTE----------QRQPSMMTRMY------------------IEQRDRLYND 122
Query: 467 SEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPG----------------ETPSSF--- 507
++ F + R + + + L R + S+
Sbjct: 123 NQV-----FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 508 -VMNGVINFLLT-----RDDPIASLLRKMYLFKIIPMLN--PDGVARGHYRTDTRGVNLN 559
M+ I F L + + +L+K+ ++I P D + R + L
Sbjct: 178 CKMDFKI-FWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 560 RYYTNPS-P--------VYHPSVFAA 576
R + V + + A
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNA 261
Score = 34.8 bits (79), Expect = 0.097
Identities = 37/281 (13%), Positives = 73/281 (25%), Gaps = 70/281 (24%)
Query: 347 NRQVKMF-SQGMAPVYRSHSTRNQW--ERIREKPTYSYDGSVFTLSFKHRI-TDTKSFTY 402
V+ F + + Y ++ I+ + + + + R+ D + F
Sbjct: 76 EEMVQKFVEEVLRINY-------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 403 FAFTYPYSYSELQTHLFNLD----------------------AKFPPNEQPNPDDIYYVR 440
+ + Y +L+ L L + I+++
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 441 ECVCYTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHP 500
C + E L + + I R H + R + L ++ +
Sbjct: 189 LKNCNSPETVLEMLQKL--LYQIDPNWTSRSDH--SSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 501 GETPSSFVMNGVIN------F-------LLTRDDPIASLLRKMYLFKIIPMLNPDGVARG 547
V+ V N F L TR + L I + +
Sbjct: 245 N---CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--- 298
Query: 548 HYRTDTRGVNLNRYYTN------PSPVY--HP---SVFAAR 577
T +L Y + P V +P S+ A
Sbjct: 299 ---TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Score = 31.7 bits (71), Expect = 0.89
Identities = 38/283 (13%), Positives = 84/283 (29%), Gaps = 90/283 (31%)
Query: 45 GTEFENGNRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPV-YRSHSTRIFMYGN 103
+G TW ++ +N L ++ + P YR R+ +
Sbjct: 334 AESIRDGLATWDNW----------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--- 380
Query: 104 HFQNTVD---KVECMLLAKIMSINSPHF--HFH-----ACNFTERIMYLRDRRDGLSREG 153
F + + ++ ++ + H E + + L +
Sbjct: 381 -FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 154 AGRVAVGKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTPALFEEMG 213
A+ + ++ Y + +++ + + P D +Y + +G
Sbjct: 440 ENEYALHRS--IVDHYNIPKTFDS----DDLIPPYLD------------QY---FYSHIG 478
Query: 214 ------ENAQDITLALWVVFVSNLPSYIGETFRTVRLTVEKFNVIESRVLTGEQHLWQEL 267
E+ + +TL FR V L F +E + + + W
Sbjct: 479 HHLKNIEHPERMTL-----------------FRMVFL---DFRFLEQK-IRHDSTAWNAS 517
Query: 268 SYSMELSTLISIKQ---------------LSSILDFITGSESS 295
L+TL +K +++ILDF+ E +
Sbjct: 518 GSI--LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 48.7 bits (116), Expect = 3e-06
Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 47/196 (23%)
Query: 398 KSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTI 457
++ F + + +S+++ L ++P I + V ++E R + ++ I
Sbjct: 1 QAVQPVDFRH-HHFSDMEIFLRRYANEYP--------SITRLYS-VGKSVELRELYVMEI 50
Query: 458 SSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLL 517
S + GI EP +H E ++ +I +L
Sbjct: 51 SDNPGIHEAGEP---------------------EFKYIGNMHGNEVVGRELLLNLIEYLC 89
Query: 518 T---RDDPIASLLRKMYLFKIIPMLNPDGVARGHY--------RTDTRGVNLNR----YY 562
D + L++ + I+P +NPDG + R ++ +LNR +
Sbjct: 90 KNFGTDPEVTDLVQSTRIH-IMPSMNPDGYEKSQEGDRGGTVGRNNSNNYDLNRNFPDQF 148
Query: 563 TNPSPVYHPSVFAARS 578
+ P A S
Sbjct: 149 FQVTDPPQPETLAVMS 164
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 47.7 bits (114), Expect = 4e-06
Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 51/179 (28%)
Query: 400 FTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISS 459
F + Y ++Y+E+ + + + +P +I + + EGR + + IS
Sbjct: 2 FPSYDSGY-HNYNEMVNKINTVASNYP--------NIVKKFS-IGKSYEGRELWAVKISD 51
Query: 460 HHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT- 518
++ V +A H E + + ++
Sbjct: 52 ----------------------NVGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQN 89
Query: 519 --RDDPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTR---------------GVNLNR 560
D I +L+ ++ I+ +NPDG + G +LNR
Sbjct: 90 YNLDSRITNLVNNREIY-IVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNR 147
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 47.7 bits (113), Expect = 6e-06
Identities = 29/190 (15%), Positives = 61/190 (32%), Gaps = 47/190 (24%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
F Y + ++ L + + + ++ + +++GR + +L +
Sbjct: 1 LDFNY-HRQEGMEAFLKTVAQNYS--------SVTHLHS-IGKSVKGRNLWVLVVGRFPK 50
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT---R 519
+ P A +H ET ++ +I++L+T +
Sbjct: 51 EHRIGIPE---------------------FKYVANMHGDETVGRELLLHLIDYLVTSDGK 89
Query: 520 DDPIASLLRKMYLFKIIPMLNPDGVARGH-----YRTDTR---GVNLNR----YYTNPSP 567
D I +L+ + I+P +NPDG Y +LNR + +
Sbjct: 90 DPEITNLINSTRIH-IMPSMNPDGFEAVKKPDCYYSIGRENYNQYDLNRNFPDAFEYNNV 148
Query: 568 VYHPSVFAAR 577
P A
Sbjct: 149 SRQPETVAVM 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 7e-06
Identities = 81/491 (16%), Positives = 144/491 (29%), Gaps = 173/491 (35%)
Query: 129 HFHACNFTERIMYLRDRRD----GLSREGAGRVAVGKITGLIRSYTLECNYNTGRIVNVV 184
F C YL D + K LI++Y + R +
Sbjct: 90 EFENC-------YLEGN-DIHALAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKK 140
Query: 185 PPS----SRDPGKRSNLTLV------PPKYTPALFEEMGENAQDITLALWVV---FVSNL 231
S + G + L + Y FEE+ +D L+ V +L
Sbjct: 141 SNSALFRAVGEGN-AQLVAIFGGQGNTDDY----FEEL----RD----LYQTYHVLVGDL 187
Query: 232 PSYIGETFRTVRLTVEKFNVIESRVLTGEQHLWQE-------LSY--SMELS-TLISIKQ 281
+ ET + T + ++ L + W E Y S+ +S LI + Q
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILE--WLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 282 LSS--------------ILDFITGSESSGGGEGIDYEFNVWPKADCAGTEFENGNRTWFH 327
L+ + ++ G+ +G +G+ V A A T+ +W
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGA--TGHSQGL-----VTAVA-IAETD------SWES 291
Query: 328 FGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRNQWERIREKPTYSYDGSVFT 387
F + A+ V +F G R + P S S+
Sbjct: 292 FFVSVRKAITV-------------LFFIG----VRCYEAY---------PNTSLPPSILE 325
Query: 388 LSFKH---------RITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQ-----PN- 432
S ++ I++ + ++Q ++ ++ P +Q N
Sbjct: 326 DSLENNEGVPSPMLSISN------------LTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 433 PDDIYYVRECVC---YTLEGRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDK 489
+ V V +L G + L + G+ + R+P F E R KF+
Sbjct: 374 AKN--LV---VSGPPQSLYGLNLTLRKAKAPSGL---DQSRIP--FSE----RKLKFS-- 417
Query: 490 KVVFL--SARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARG 547
FL ++ H S + + + + IP V
Sbjct: 418 -NRFLPVASPFH-----SHL-LVPASDLINKDLVKNNVSFNAKDI--QIP------V--- 459
Query: 548 HYRTDTRGVNL 558
Y T G +L
Sbjct: 460 -YDTFD-GSDL 468
Score = 41.6 bits (97), Expect = 7e-04
Identities = 63/320 (19%), Positives = 105/320 (32%), Gaps = 123/320 (38%)
Query: 21 GSESSGGGEGID-YE-----FNVWPKADCAGTEFENGNRTWFHFGMK-GGSALKVVKLNI 73
GS+ G G+D Y+ +VW +AD HF G S L +V N
Sbjct: 1625 GSQEQG--MGMDLYKTSKAAQDVWNRADN-------------HFKDTYGFSILDIVINNP 1669
Query: 74 VNLNRQVKMFSQGMAPVYRSHSTRIFMYGNH-FQNTVD-KVECMLLAKIMSINSPHFHFH 131
VNL F G + R Y F+ VD K++ + K ++ +S + F
Sbjct: 1670 VNL---TIHFG-G----EKGKRIRE-NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 132 A----CNFTE---------RIMYLRD-RRDGLSREG---AG--------RVAVGKITGL- 165
+ + T+ D + GL AG ++ + +
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780
Query: 166 -------IRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTL--VPPKYTPALFEEMGENA 216
R G + V P RD RSN + + P A F + E
Sbjct: 1781 SLVEVVFYR----------GMTMQVAVP--RDELGRSNYGMIAINPGRVAASFSQ--EAL 1826
Query: 217 QDITLAL-----WVVFVSNLPSYIGETFRTVRLTVEKFNVIESR--VLTGEQHLWQELSY 269
Q + + W+V + N +NV E++ V G+
Sbjct: 1827 QYVVERVGKRTGWLVEIVN------------------YNV-ENQQYVAAGD--------- 1858
Query: 270 SMELSTLISIKQLSSILDFI 289
L ++ ++++L+FI
Sbjct: 1859 ------LRALDTVTNVLNFI 1872
Score = 40.8 bits (95), Expect = 0.001
Identities = 57/341 (16%), Positives = 109/341 (31%), Gaps = 100/341 (29%)
Query: 6 LISIKQLSS--------------ILDFITGSESSGGGEGIDYEFNVWPKADCAGTEFENG 51
LI + QL+ + ++ G+ +G +G+ V A A T+
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGA--TGHSQGL-----VTAVA-IAETD---- 287
Query: 52 NRTWFHFGMKGGSALKVVKLNIVNLNRQVKMFSQGMAPVYRSHST--RIFMYGNHFQNTV 109
+W F + A+ V +F G R + + + ++++
Sbjct: 288 --SWESFFVSVRKAITV-------------LFFIG----VRCYEAYPNTSLPPSILEDSL 328
Query: 110 DKVE----CMLLAKIMSINSPHFHFHACNFTERIMYL-RDRRDGLSREGAGRVAVGKITG 164
+ E ML ++ + + N +L ++ +S + V ++G
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTN-----SHLPAGKQVEISLVNGAKNLV--VSG 381
Query: 165 LIRS-YTLECNY-----NTGRIVNVVPPSSRDPGKRSNLTL---VP---PKYTPALFEEM 212
+S Y L +G + +P S R K SN L P PA + +
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL-KFSNRFLPVASPFHSHLLVPAS-DLI 439
Query: 213 GENAQDITLALWVVFVSNL--PSYIGETFRTVRLTVEKFNVIES--RVLTGEQHLWQELS 268
++ ++ ++ P Y +R V ++ E + W
Sbjct: 440 NKDLVKNNVSFNA---KDIQIPVYDTFDGSDLR--VLSGSISERIVDCIIRLPVKW---- 490
Query: 269 YSMELSTLISIKQLSSILDFITGSESSGG--------GEGI 301
E +T + ILDF G S G G G+
Sbjct: 491 ---ETTTQFKA---THILDFGPGGASGLGVLTHRNKDGTGV 525
Score = 39.3 bits (91), Expect = 0.004
Identities = 46/298 (15%), Positives = 84/298 (28%), Gaps = 101/298 (33%)
Query: 84 SQ--GMA-PVYRSHSTRIFMYGNHFQNTVDKVECMLLAK----IMSI--NSPH---FHFH 131
SQ GM +Y++ Q+ ++ + I+ I N+P HF
Sbjct: 1626 SQEQGMGMDLYKTSKA--------AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 132 ACNFTERIMYLRDRRDGLSREGA--GRVAVGKITGLIRSYTLECNYNTGRIVNVVPPSSR 189
E+ +R+ + E G++ KI I ++ + R
Sbjct: 1678 G----EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-------------R 1720
Query: 190 DPGKRSNLTLVPPKYT-PALFEEMGENAQDITLALWVVFVSNLPSYIGETFRTVRLTVEK 248
+ T ++T PAL L F ++ K
Sbjct: 1721 SEKGLLSAT----QFTQPALT---------------------LMEKA--AFEDLK---SK 1750
Query: 249 FNVIESRVLTGEQHLWQELS---YS--------MELSTLISIKQL--SSILDFITGSESS 295
+ G H S Y+ M + +L+ + ++ + E
Sbjct: 1751 GLIPADATFAG--H-----SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 296 GGGEGIDYEFNVWPKADCAGTEFENGNRTWFHFGMKGGSALKVVKLNIVNLN---RQV 350
G+ + P A E G + G ++ IVN N +Q
Sbjct: 1804 RSNYGM---IAINPGRVAASFSQEALQYVVERVGKRTGWLVE-----IVNYNVENQQY 1853
Score = 35.8 bits (82), Expect = 0.042
Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 46/158 (29%)
Query: 291 GSESSGGGEGID-YE-----FNVWPKADCAGTE----------FENGNRTWFHFGMKGGS 334
GS+ G G+D Y+ +VW +AD + N HFG + G
Sbjct: 1625 GSQEQG--MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 335 ALKVVKLNIVNLNRQVKMFSQGMAPVYRSHSTRNQWERIREKPT-YSYDGSVFTLSFKHR 393
++ N +F V T ++ I E T Y++ L
Sbjct: 1683 RIRE--------NYSAMIFET---IVDGKLKTEKIFKEINEHSTSYTFRSEKGLL----- 1726
Query: 394 ITDTKSFTYFA----FTYPYS-YSELQTH-LFNLDAKF 425
S T F + + +L++ L DA F
Sbjct: 1727 -----SATQFTQPALTLMEKAAFEDLKSKGLIPADATF 1759
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 47.7 bits (113), Expect = 7e-06
Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 47/173 (27%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
AF + + Y +L L+ + + P I V + ++EGR + +L S H G
Sbjct: 2 LAFRH-HRYDDLVRTLYKVQNECP--------GITRVYS-IGRSVEGRHLYVLEFSDHPG 51
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT---- 518
I EP V +H E +M + FL
Sbjct: 52 IHEPLEPE---------------------VKYVGNMHGNEALGRELMLQLSEFLCEEFRN 90
Query: 519 RDDPIASLLRKMYLFKIIPMLNPDGVA-----------RGHYRTDTRGVNLNR 560
R+ I L++ + I+P +NPDG R + GV+LNR
Sbjct: 91 RNQRIVQLIQDTRIH-ILPSMNPDGYEVAAAQGPNKPGYLVGRNNANGVDLNR 142
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 46.8 bits (111), Expect = 1e-05
Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 50/202 (24%)
Query: 395 TDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDL 454
T + ++ + S +L+ L+ +P + V + +LEGR +
Sbjct: 27 TIKEDESFLQQPHYASQEQLEDLFAGLEKAYP--------NQAKVHF-LGRSLEGRNLLA 77
Query: 455 LTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVIN 514
L IS + N+ P V A +H ET ++ +
Sbjct: 78 LQISRNTRSRNLLTP---------------------PVKYIANMHGDETVGRQLLVYMAQ 116
Query: 515 FLLT---RDDPIASLLRKMYLFKIIPMLNPDG--VARGHYR---------TDTRGVNLNR 560
+LL R + L+ ++ ++P +NPDG +++ + ++LNR
Sbjct: 117 YLLGNHERISDLGQLVNSTDIY-LVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNR 175
Query: 561 ---YYTNPSPVYHPSVFAARSQ 579
S V+ A Q
Sbjct: 176 DFPDRLEQSHVHQLR--AQSRQ 195
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 44.8 bits (106), Expect = 5e-05
Identities = 34/173 (19%), Positives = 55/173 (31%), Gaps = 48/173 (27%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
+F +SY E+ +L L +FP + EGR + L IS+
Sbjct: 116 LSFDKIHSYEEVDAYLQELAKEFPNVVT---------VVEGGKSFEGRSIKYLRIST--- 163
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDP 522
+ K VV + + +H E + I+ L+ D
Sbjct: 164 -------------------TNFQDASKPVVMMQSLLHCREWVTLPATLYAIHKLVI-DVT 203
Query: 523 IASLLRKMYLFKIIPMLNPDGVARGHYR---------------TDTRGVNLNR 560
+ L+ + I+P+ NPDG GV+LNR
Sbjct: 204 ESDLINNIDWI-ILPVANPDGYVHTFGGDRYWRKNRATGYMAGNLCMGVDLNR 255
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 44.3 bits (105), Expect = 6e-05
Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 54/180 (30%)
Query: 397 TKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLT 456
T +Y + ++ ++ + ++ P R + T G + LL
Sbjct: 1 TTGHSYEKY---NNWETIEAWTKQVTSENPDLIS---------RTAIGTTFLGNNIYLLK 48
Query: 457 ISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFL 516
+ K +K +F+ H E S +
Sbjct: 49 VG-------------------------KPGPNKPAIFMDCGFHAREWISHAFCQWFVREA 83
Query: 517 LT---RDDPIASLLRKMYLFKIIPMLNPDGVA-------------RGHYRTDTRGVNLNR 560
+ + + L K+ + ++P+LN DG + T G + NR
Sbjct: 84 VLTYGYESHMTEFLNKLDFY-VLPVLNIDGYIYTWTKNRMWRKTRSTNAGTTCIGTDPNR 142
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 43.1 bits (102), Expect = 2e-04
Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 50/174 (28%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
F + +S + + N+ A FP + R + ++ E R + +L S+ G
Sbjct: 5 FNYGAYHSLEAIYHEMDNIAADFPDLAR---------RVKIGHSFENRPMYVLKFSTGKG 55
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT---R 519
+ V+L+A +H E S +++ R
Sbjct: 56 ------------------------VRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQR 91
Query: 520 DDPIASLLRKMYLFKIIPMLNPDGVA-------------RGHYRTDTRGVNLNR 560
D I S+L KM +F ++P+ NPDG + + G + NR
Sbjct: 92 DPAITSILEKMDIF-LLPVANPDGYVYTQTQNRLWRKTRSRNPGSSCIGADPNR 144
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 41.6 bits (98), Expect = 4e-04
Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 53/175 (30%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
F F ++ E+ + NL A+ P + + + E R +++L S+
Sbjct: 1 FNFGAYHTLEEISQEMDNLVAEHPGLVS---------KVNIGSSFENRPMNVLKFSTG-- 49
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT---R 519
DK ++L A +H E + N +++ +
Sbjct: 50 ------------------------GDKPAIWLDAGIHAREWVTQATALWTANKIVSDYGK 85
Query: 520 DDPIASLLRKMYLFKIIPMLNPDGV--ARGHYR------------TDTRGVNLNR 560
D I S+L + +F ++P+ NPDG ++ R + GV+ NR
Sbjct: 86 DPSITSILDALDIF-LLPVTNPDGYVFSQTKNRMWRKTRSKVSAGSLCVGVDPNR 139
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 41.6 bits (98), Expect = 5e-04
Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 49/168 (29%)
Query: 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSE 468
+ +L + K+P + EGR + + IS+
Sbjct: 7 QELEVIDEYLDYIGEKYPDVAT---------VVNAAESFEGRPIKYIKIST--------- 48
Query: 469 PRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLR 528
+ +K V+F+ +H E S + I+ L+ D LL
Sbjct: 49 -------------TNFEDENKPVIFIDGGIHAREWISPPSVTWAIHKLVE-DVTENDLLE 94
Query: 529 KMYLFKIIPMLNPDGVA----------------RGHYRTDTRGVNLNR 560
K ++P++NPDG RG + NR
Sbjct: 95 KFDWI-LLPVVNPDGYKYTFTNERFWRKTRSTNNNPLSQICRGADGNR 141
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 40.9 bits (96), Expect = 7e-04
Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 50/168 (29%)
Query: 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSE 468
+S +E+ + + + ++P + + + + E + +L +S
Sbjct: 10 HSLNEIYSWIEVMTERYPDMVE---------KIHIGSSYEKYPLYVLKVSKKEQ------ 54
Query: 469 PRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT---RDDPIAS 525
K +++ +H E S + + ++ +
Sbjct: 55 ------------------RAKNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTN 96
Query: 526 LLRKMYLFKIIPMLNPDGVA-------------RGHYRTDTRGVNLNR 560
LL+ M + I+P++N DG H + G +LNR
Sbjct: 97 LLKHMDFY-IMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNR 143
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 40.9 bits (96), Expect = 9e-04
Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 53/187 (28%)
Query: 389 SFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLE 448
F R + +F + A+ ++ E+ + NL A+ P + + + E
Sbjct: 89 LFNRRRERSGNFNFGAY---HTLEEISQEMDNLVAEHPGLVS---------KVNIGSSFE 136
Query: 449 GRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFV 508
R +++L S+ DK ++L A +H E +
Sbjct: 137 NRPMNVLKFSTG--------------------------GDKPAIWLDAGIHAREWVTQAT 170
Query: 509 MNGVINFLLTR--DDPIASLLRKMYLFKIIPMLNPDGVA-------------RGHYRTDT 553
N +++ DP + + ++P+ NPDG +
Sbjct: 171 ALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKNRMWRKTRSKVSGSLC 230
Query: 554 RGVNLNR 560
GV+ NR
Sbjct: 231 VGVDPNR 237
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 40.6 bits (95), Expect = 0.001
Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 48/190 (25%)
Query: 389 SFKHRITDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLE 448
+H +S F + +S + + N+ A FP D+ + + ++ E
Sbjct: 87 EMQHNEGQERSSNNFNYGAYHSLEAIYHEMDNIAADFP--------DLARRVK-IGHSFE 137
Query: 449 GRRVDLLTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFV 508
R + +L S+ G + V+L+A +H E S
Sbjct: 138 NRPMYVLKFSTGKG------------------------VRRPAVWLNAGIHSREWISQAT 173
Query: 509 MNGVINFLLT--RDDPIASLLRKMYLFKIIPMLNPDGVA-------------RGHYRTDT 553
+++ + DP + + + ++P+ NPDG + +
Sbjct: 174 AIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSSC 233
Query: 554 RGVNLNRYYT 563
G + NR +
Sbjct: 234 IGADPNRNWN 243
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 40.1 bits (94), Expect = 0.001
Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 52/182 (28%)
Query: 397 TKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLT 456
T +F Y + ++ E+ + L A+ P + + + EGR + +L
Sbjct: 4 TNTFNYATY---HTLDEIYDFMDLLVAEHPQLVS---------KLQIGRSYEGRPIYVLK 51
Query: 457 ISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFL 516
S+ ++ +++ +H E +
Sbjct: 52 FSTGGS-------------------------NRPAIWIDLGIHSREWITQATGVWFAKKF 86
Query: 517 LTR--DDPIASLLRKMYLFKIIPMLNPDGVA-------------RGHYRTDTRGVNLNRY 561
DP + + + + NPDG A + GV+ NR
Sbjct: 87 TEDYGQDPSFTAILDSMDIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRN 146
Query: 562 YT 563
+
Sbjct: 147 WD 148
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 38.6 bits (90), Expect = 0.005
Identities = 19/175 (10%), Positives = 49/175 (28%), Gaps = 49/175 (28%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
F + ++ E+ + L A+ P + + + EGR + +L S+
Sbjct: 102 FNYATYHTLEEIYDFMDILVAEHPALVS---------KLQIGRSYEGRPIYVLKFSTGGS 152
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT--RD 520
++ +++ + +H E + +
Sbjct: 153 -------------------------NRPAIWIDSGIHSREWITQASGVWFAKKITENYGQ 187
Query: 521 DPIASLLRKMYLFKIIPMLNPDGVA-------------RGHYRTDTRGVNLNRYY 562
+ + + + + NP+G A + G + NR +
Sbjct: 188 NSSFTAILDSMDIFLEIVTNPNGFAFTHSDNRLWRKTRSKASGSLCVGSDSNRNW 242
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 38.2 bits (89), Expect = 0.006
Identities = 19/152 (12%), Positives = 51/152 (33%), Gaps = 37/152 (24%)
Query: 395 TDTKSFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDL 454
T + + + +S +E+ + + + ++P + + + + E + +
Sbjct: 88 TISPRASSSYYEQYHSLNEIYSWIEVMTERYPDMVE---------KIHIGSSYEKYPLYV 138
Query: 455 LTISSHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVIN 514
L +S K +++ +H E S +
Sbjct: 139 LKVSKKEQ------------------------RAKNAMWIDCGIHAREWISPAFCLWFVG 174
Query: 515 FLLT---RDDPIASLLRKMYLFKIIPMLNPDG 543
+ ++ +LL+ M + I+P++N DG
Sbjct: 175 SVTYYYGKEKMHTNLLKHMDFY-IMPVVNVDG 205
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 37.5 bits (87), Expect = 0.009
Identities = 24/173 (13%), Positives = 46/173 (26%), Gaps = 49/173 (28%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
++ + ++ + + P R + T EGR + LL +
Sbjct: 99 HSYEKYNKWETIEAWTQQVATENPALIS---------RSVIGTTFEGRAIYLLKVGKAGQ 149
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTR--D 520
+K +F+ H E S + +
Sbjct: 150 -------------------------NKPAIFMDCGFHAREWISPAFCQWFVREAVRTYGR 184
Query: 521 DPIASLLRKMYLFKIIPMLNPDGVA-------------RGHYRTDTRGVNLNR 560
+ + L F ++P+LN DG H + G + NR
Sbjct: 185 EIQVTELLNKLDFYVLPVLNIDGYIYTWTKSRFWRKTRSTHTGSSCIGTDPNR 237
>2qj8_A MLR6093 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Length = 332
Score = 35.6 bits (81), Expect = 0.032
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 488 DKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARG 547
+ + ++ H E + ++ +L + I+P +NP V
Sbjct: 44 EGPSLLITGGNHGNELQGPILARRLVKWLPEAQRCGRII--------IVPEINPLAVQAW 95
Query: 548 HYRTDTRGVNLNRYYTNPSPVYHPSVFAARSQ 579
T G NLNR + S A
Sbjct: 96 TRNTPIDGKNLNRVFPGRSDGSVSERIADAIS 127
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 33.7 bits (76), Expect = 0.14
Identities = 13/90 (14%), Positives = 19/90 (21%), Gaps = 8/90 (8%)
Query: 490 KVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHY 549
K L+ H E + + I+P N
Sbjct: 50 KTALLTGANHGDEYEGPVALQELAATT--------RAEDVTGRLIIVPYFNYPAFRASAR 101
Query: 550 RTDTRGVNLNRYYTNPSPVYHPSVFAARSQ 579
+ NLNR + A Q
Sbjct: 102 TSPIDRGNLNRAFPGRPDGTVTQKIADYFQ 131
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 31.4 bits (70), Expect = 0.75
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 490 KVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIASLLRKMYLFKIIPMLNPDGVARGHY 549
V L+ VH E I+ L R P R + ++P +N +
Sbjct: 54 PTVLLTGGVHGDEYEGQIA----ISDLARRLRPEEVQGRVI----MLPAVNMPAIQSDTR 105
Query: 550 RTDTRGVNLNRYY 562
+ G ++NR +
Sbjct: 106 LSPVDGRDINRCF 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.0
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 193 KR--SNLTLVPPKYTPAL 208
K+ ++L L PAL
Sbjct: 23 KKLQASLKLYADDSAPAL 40
Score = 28.4 bits (62), Expect = 4.1
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 70 KLNIVNLNRQVKMFSQGMAP 89
K + L +K+++ AP
Sbjct: 19 KQALKKLQASLKLYADDSAP 38
Score = 28.4 bits (62), Expect = 4.1
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 340 KLNIVNLNRQVKMFSQGMAP 359
K + L +K+++ AP
Sbjct: 19 KQALKKLQASLKLYADDSAP 38
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium
tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Length = 407
Score = 28.7 bits (65), Expect = 5.2
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 142 LRDRRDGL----SREGAGRVAVGKI 162
D R L +RE A RVA G +
Sbjct: 126 FDDARPVLERASARETAARVAAGTV 150
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_U
Length = 1289
Score = 29.0 bits (64), Expect = 5.3
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 361 YRSHSTRNQWERIREKPTYSYDGSVFTLSFKHRITDTKSFTYFAFTYPYSYSELQTHLFN 420
RS ++ + R+R P +L + R F S T ++N
Sbjct: 757 RRSPASARRKSRLRYLPL----IDPRSLEVQARTILPADPVLFENVSGASPHVCLTMMYN 812
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A
{Bifidobacterium longum subsp}
Length = 398
Score = 28.7 bits (65), Expect = 5.5
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 142 LRDRRDGL----SREGAGRVAVGKI 162
D R L +RE A RVA+G++
Sbjct: 128 FDDARPVLERSSARETASRVALGEV 152
>3go5_A Multidomain protein with S1 RNA-binding domains; structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.40A {Streptococcus pneumoniae}
Length = 285
Score = 28.8 bits (64), Expect = 5.6
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 148 GLSREGAGRVAV-GKITGLIRSYTLECNYNTGRIVNVVPPSSRDPGKRSNLTLVPPKYTP 206
L G + G I G++++ R+ + NL+L P +
Sbjct: 162 RLKLSGTFVYLPENNMLGFIHPSERYAEPRLGQVLDARVIGFREVDRTLNLSLKPRSF-- 219
Query: 207 ALFEEMGENAQDITLAL 223
E + +AQ I L
Sbjct: 220 ---EMLENDAQMILTYL 233
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate,
anti-infective, lyase; HET: FMN EPS; 2.00A
{Streptococcus pneumoniae} SCOP: d.258.1.1
Length = 388
Score = 28.6 bits (65), Expect = 5.6
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 142 LRDRRDGL----SREGAGRVAVGKI 162
D R+ L +RE RVAVG +
Sbjct: 121 FDDLRNSLERSSARETTMRVAVGAV 145
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA
recognition, stress granules, nucleus, RNA-binding,
transcription; NMR {Saccharomyces cerevisiae}
Length = 101
Score = 26.9 bits (60), Expect = 7.8
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 200 VPPKYTPALFEEMGENA-QDITLALWVVFVSNLPSYIGETFRTVRLTVEKFNVIES 254
+PP+ P + + +A +T ++ N+P + E + + F I
Sbjct: 7 LPPQVNPQAVDHIIRSAPPRVT----TAYIGNIPHFATE--ADLIPLFQNFGFILD 56
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex...; cubic core, HOMO trimer,
oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus}
PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 28.0 bits (63), Expect = 8.4
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 372 RIREKPTYSYDGSV-------FTLSFKHRITD 396
I+ P ++ G V + S HRI D
Sbjct: 205 TIKALPRFNEKGEVCKAQIMNVSWSADHRIID 236
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.415
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,014,880
Number of extensions: 549859
Number of successful extensions: 1045
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1016
Number of HSP's successfully gapped: 51
Length of query: 579
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 480
Effective length of database: 3,937,614
Effective search space: 1890054720
Effective search space used: 1890054720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)