RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17594
(579 letters)
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 301
Score = 56.8 bits (136), Expect = 2e-09
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 34/169 (20%)
Query: 405 FTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGIT 464
F + + +S+++ L ++P I + V ++E R + ++ IS + GI
Sbjct: 8 FRH-HHFSDMEIFLRRYANEYP--------SITRLYS-VGKSVELRELYVMEISDNPGIH 57
Query: 465 NVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT--RDDP 522
+ +H E ++ +I +L DP
Sbjct: 58 E---------------------AGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDP 96
Query: 523 IASLLRKMYLFKIIPMLNPDGVARGHYRT-DTRGVNLNRYYTNPSPVYH 570
+ L + I+P +NPDG + N + + +
Sbjct: 97 EVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNNYDLNRNFP 145
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 56.4 bits (135), Expect = 2e-09
Identities = 28/179 (15%), Positives = 59/179 (32%), Gaps = 41/179 (22%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
F Y + ++ L + + + ++ + +++GR + +L +
Sbjct: 1 LDFNY-HRQEGMEAFLKTVAQNYS--------SVTHLHS-IGKSVKGRNLWVLVVGRFPK 50
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRD-- 520
+ P A +H ET ++ +I++L+T D
Sbjct: 51 EHRIGIPE---------------------FKYVANMHGDETVGRELLLHLIDYLVTSDGK 89
Query: 521 DPIASLLRKMYLFKIIPMLNPDGVAR--------GHYRTDTRGVNLNRYYTNPSPVYHP 571
DP + L I+P +NPDG R + +LNR + + +
Sbjct: 90 DPEITNLINSTRIHIMPSMNPDGFEAVKKPDCYYSIGRENYNQYDLNRNFPDAFEYNNV 148
>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 305
Score = 50.3 bits (119), Expect = 3e-07
Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 35/160 (21%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
F + +S + + N+ A FP D+ + + ++ E R + +L S+ G
Sbjct: 4 FNYGAYHSLEAIYHEMDNIAADFP--------DLARRVK-IGHSFENRPMYVLKFSTGKG 54
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT--RD 520
+ V+L+A +H E S +++ +
Sbjct: 55 ------------------------VRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQR 90
Query: 521 DPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNR 560
DP + + + ++P+ NPDG + +R
Sbjct: 91 DPAITSILEKMDIFLLPVANPDGYVYTQTQNRLWRKTRSR 130
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 49.8 bits (118), Expect = 4e-07
Identities = 38/189 (20%), Positives = 61/189 (32%), Gaps = 48/189 (25%)
Query: 399 SFTYFAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTIS 458
+ + +F +SY E+ +L L +FP ++ V E + EGR + L IS
Sbjct: 3 TRSRLSFDKIHSYEEVDAYLQELAKEFP--------NVVTVVE-GGKSFEGRSIKYLRIS 53
Query: 459 SHHGITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT 518
+ + K VV + + +H E + I+ L
Sbjct: 54 TTNFQD----------------------ASKPVVMMQSLLHCREWVTLPATLYAIHKL-- 89
Query: 519 RDDPIASLLRKMYLFKIIPMLNPDGVARGH---------------YRTDTRGVNLNRYYT 563
D S L + I+P+ NPDG GV+LNR +
Sbjct: 90 VIDVTESDLINNIDWIILPVANPDGYVHTFGGDRYWRKNRATGYMAGNLCMGVDLNRNFG 149
Query: 564 NPSPVYHPS 572
S
Sbjct: 150 MNWGTASSS 158
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 48.6 bits (115), Expect = 8e-07
Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 39/166 (23%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
F F ++ E+ + NL A+ P + + + E R +++L S+
Sbjct: 6 FNFGAYHTLEEISQEMDNLVAEHP--------GLVSKVN-IGSSFENRPMNVLKFSTG-- 54
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTR--D 520
DK ++L A +H E + N +++
Sbjct: 55 ------------------------GDKPAIWLDAGIHAREWVTQATALWTANKIVSDYGK 90
Query: 521 DPIASLLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPS 566
DP + + ++P+ NPDG +T R R + S
Sbjct: 91 DPSITSILDALDIFLLPVTNPDGYV--FSQTKNRMWRKTRSKVSGS 134
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId:
9913]}
Length = 307
Score = 47.1 bits (111), Expect = 3e-06
Identities = 25/185 (13%), Positives = 52/185 (28%), Gaps = 49/185 (26%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
F + ++ E+ + L A+ P + + + + EGR + +L S+
Sbjct: 7 FNYATYHTLDEIYDFMDLLVAEHP--------QLVSKLQ-IGRSYEGRPIYVLKFSTGGS 57
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTR--D 520
++ +++ +H E +
Sbjct: 58 -------------------------NRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQ 92
Query: 521 DPIASLLRKMYLFKIIPMLNPDGVARGH-------------YRTDTRGVNLNRYYTNPSP 567
DP + + + + NPDG A H + GV+ NR +
Sbjct: 93 DPSFTAILDSMDIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFG 152
Query: 568 VYHPS 572
S
Sbjct: 153 KAGAS 157
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 44.4 bits (104), Expect = 2e-05
Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 49/177 (27%)
Query: 405 FTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGIT 464
+ + +L + K+P D+ V + EGR + + IS+
Sbjct: 3 YDNYQELEVIDEYLDYIGEKYP--------DVATVVN-AAESFEGRPIKYIKIST----- 48
Query: 465 NVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLTRDDPIA 524
+ +K V+F+ +H E S + I+ L+
Sbjct: 49 -----------------TNFEDENKPVIFIDGGIHAREWISPPSVTWAIHKLVEDVTEND 91
Query: 525 SLLRKMYLFKIIPMLNPDGVARGH----------------YRTDTRGVNLNRYYTNP 565
L + + + ++P++NPDG RG + NR +
Sbjct: 92 --LLEKFDWILLPVVNPDGYKYTFTNERFWRKTRSTNNNPLSQICRGADGNRNFDFV 146
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 41.4 bits (96), Expect = 2e-04
Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 35/161 (21%)
Query: 409 YSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHGITNVSE 468
++Y+E+ + + + +P +I + + EGR + + IS + G
Sbjct: 10 HNYNEMVNKINTVASNYP--------NIVKKFS-IGKSYEGRELWAVKISDNVGTDE--- 57
Query: 469 PRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT---RDDPIAS 525
++ V +A H E + + ++ D I +
Sbjct: 58 -------------------NEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITN 98
Query: 526 LLRKMYLFKIIPMLNPDGVARGHYRTDTRGVNLNRYYTNPS 566
L+ ++ I+ +NPDG + NR + S
Sbjct: 99 LVNNREIY-IVFNINPDGGEYDISSGSYKSWRKNRQPNSGS 138
>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 304
Score = 40.2 bits (93), Expect = 4e-04
Identities = 22/185 (11%), Positives = 49/185 (26%), Gaps = 51/185 (27%)
Query: 403 FAFTYPYSYSELQTHLFNLDAKFPPNEQPNPDDIYYVRECVCYTLEGRRVDLLTISSHHG 462
++ ++ ++ + ++ P D+ + T G + LL +
Sbjct: 2 HSYEKYNNWETIEAWTKQVTSENP--------DLISRTA-IGTTFLGNNIYLLKVGKPG- 51
Query: 463 ITNVSEPRLPHLFPEDATCRPKKFTDKKVVFLSARVHPGETPSSFVMNGVINFLLT---R 519
+K +F+ H E S + +
Sbjct: 52 ------------------------PNKPAIFMDCGFHAREWISHAFCQWFVREAVLTYGY 87
Query: 520 DDPIASLLRKMYLFKIIPMLNPDGVARGH-------------YRTDTRGVNLNRYYTNPS 566
+ + L K+ + ++P+LN DG T G + NR +
Sbjct: 88 ESHMTEFLNKLDFY-VLPVLNIDGYIYTWTKNRMWRKTRSTNAGTTCIGTDPNRNFDAGW 146
Query: 567 PVYHP 571
Sbjct: 147 CTTGA 151
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain)
{Synthetic}
Length = 47
Score = 25.4 bits (56), Expect = 2.7
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 482 RPKKFTDKKVVFLSARVHPGETPSS 506
RP+ + +S + G
Sbjct: 2 RPRAINKHEQEQISRLLEKGHPRQQ 26
>d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain N
{Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Length = 122
Score = 25.6 bits (56), Expect = 9.3
Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 227 FVSNLPSYIGETFRTVRLTVEKFNVIESRVLTGEQHLWQELSYSME 272
F + ++ T++L K ++ + + + M
Sbjct: 20 FDNAPEPTSTQSV-TLKLRTFKGDITSANIKYWDTADNAFHWVPMV 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.415
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,219,950
Number of extensions: 106747
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 11
Length of query: 579
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 489
Effective length of database: 1,171,896
Effective search space: 573057144
Effective search space used: 573057144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)