BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17595
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y69|G Chain G, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2Y69|T Chain T, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
Length = 97
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 78 RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
R WR LT+ ALP AL + +L H RP F+ +L IR + F WGDGNHT
Sbjct: 26 RTWRFLTFGLALPSVALCTLNSWLH----SGHRERPAFIPYHHLRIRTKPFSWGDGNHTF 81
Query: 138 FHNKHVNALPEGYEE 152
FHN VN LP GYE+
Sbjct: 82 FHNPRVNPLPTGYEK 96
>pdb|1OCC|G Chain G, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|T Chain T, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|2OCC|G Chain G, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|T Chain T, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCO|G Chain G, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCO|T Chain T, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCR|G Chain G, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|T Chain T, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCZ|G Chain G, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|T Chain T, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|2YBB|R Chain R, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 84
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 78 RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
R WR LT+ ALP AL + +L H RP F+ +L IR + F WGDGNHT
Sbjct: 14 RTWRFLTFGLALPSVALCTLNSWLH----SGHRERPAFIPYHHLRIRTKPFSWGDGNHTF 69
Query: 138 FHNKHVNALPEGYEE 152
FHN VN LP GYE+
Sbjct: 70 FHNPRVNPLPTGYEK 84
>pdb|1V54|G Chain G, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V54|T Chain T, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V55|G Chain G, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|1V55|T Chain T, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|2DYR|G Chain G, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYR|T Chain T, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYS|G Chain G, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2DYS|T Chain T, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2EIJ|G Chain G, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIJ|T Chain T, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIK|G Chain G, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIK|T Chain T, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIL|G Chain G, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIL|T Chain T, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIM|G Chain G, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIM|T Chain T, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIN|G Chain G, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIN|T Chain T, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2ZXW|G Chain G, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|2ZXW|T Chain T, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|3ABL|G Chain G, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABL|T Chain T, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABM|G Chain G, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABM|T Chain T, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABK|G Chain G, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3ABK|T Chain T, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3AG1|G Chain G, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG1|T Chain T, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG2|G Chain G, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG2|T Chain T, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG3|G Chain G, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG3|T Chain T, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG4|G Chain G, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3AG4|T Chain T, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3ASN|G Chain G, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASN|T Chain T, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASO|G Chain G, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|3ASO|T Chain T, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
Length = 85
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 78 RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
R WR LT+ ALP AL + +L H RP F+ +L IR + F WGDGNHT
Sbjct: 14 RTWRFLTFGLALPSVALCTLNSWLH----SGHRERPAFIPYHHLRIRTKPFSWGDGNHTF 69
Query: 138 FHNKHVNALPEGYEE 152
FHN VN LP GYE+
Sbjct: 70 FHNPRVNPLPTGYEK 84
>pdb|3H7R|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme
Akr4c8
Length = 331
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 67 FVKREYLYIRNRLWRN 82
FVKRE L+I ++LW N
Sbjct: 86 FVKREELFITSKLWSN 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,017,288
Number of Sequences: 62578
Number of extensions: 203429
Number of successful extensions: 582
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 8
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)