BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17595
         (153 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9TTT7|CX6A1_RABIT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus
           cuniculus GN=COX6A1 PE=3 SV=1
          Length = 109

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R+W+ LTYF ALP   +  + VYL+   EE  H RPEF+   +L IR++ FPWGDGNHTL
Sbjct: 36  RMWKALTYFVALPGVGVSMLNVYLKSHHEE--HERPEFIAYPHLRIRSKPFPWGDGNHTL 93

Query: 138 FHNKHVNALPEGYEE 152
           FHN HVN LP GYE+
Sbjct: 94  FHNPHVNPLPTGYED 108


>sp|P12074|CX6A1_HUMAN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Homo sapiens
           GN=COX6A1 PE=1 SV=4
          Length = 109

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 2/76 (2%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R+W+ LT+F ALP  A+  + VYL+    E  H RPEF+   +L IR + FPWGDGNHTL
Sbjct: 36  RMWKTLTFFVALPGVAVSMLNVYLKSHHGE--HERPEFIAYPHLRIRTKPFPWGDGNHTL 93

Query: 138 FHNKHVNALPEGYEED 153
           FHN HVN LP GYE++
Sbjct: 94  FHNPHVNPLPTGYEDE 109


>sp|P10818|CX6A1_RAT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus
           norvegicus GN=Cox6a1 PE=1 SV=2
          Length = 111

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 54/76 (71%), Gaps = 2/76 (2%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R+W+ LTYF ALP   +  + V+L+ + EE  H RPEFV   +L IR + FPWGDGNHTL
Sbjct: 38  RIWKALTYFVALPGVGVSMLNVFLKSRHEE--HERPEFVAYPHLRIRTKPFPWGDGNHTL 95

Query: 138 FHNKHVNALPEGYEED 153
           FHN H+N LP GYE++
Sbjct: 96  FHNPHMNPLPTGYEDE 111


>sp|P13182|CX6A1_BOVIN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Bos taurus
           GN=COX6A1 PE=1 SV=3
          Length = 109

 Score = 90.5 bits (223), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLE-HQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHT 136
           R+W+ LTYF ALP   +  + V+L+ H  EEE   RPEFV   +L IR++ FPWGDGNHT
Sbjct: 36  RMWKALTYFVALPGVGVSMLNVFLKSHHGEEE---RPEFVAYPHLRIRSKPFPWGDGNHT 92

Query: 137 LFHNKHVNALPEGYEED 153
           LFHN HVN LP GYE++
Sbjct: 93  LFHNPHVNPLPTGYEDE 109


>sp|P43024|CX6A1_MOUSE Cytochrome c oxidase subunit 6A1, mitochondrial OS=Mus musculus
           GN=Cox6a1 PE=1 SV=2
          Length = 111

 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 2/76 (2%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R+W+ LTYF ALP   +  + V+L+ + EE  H RP FV   +L IR + FPWGDGNHTL
Sbjct: 38  RMWKALTYFVALPGVGVSMLNVFLKSRHEE--HERPPFVAYPHLRIRTKPFPWGDGNHTL 95

Query: 138 FHNKHVNALPEGYEED 153
           FHN HVN LP GYE++
Sbjct: 96  FHNPHVNPLPTGYEDE 111


>sp|O13085|COX6A_ONCMY Cytochrome c oxidase subunit 6A, mitochondrial OS=Oncorhynchus
           mykiss PE=3 SV=1
          Length = 102

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R W+ L++  ALP  A+     Y++ Q  +  H  PEFV   +L IR +++PWGDGNH+L
Sbjct: 27  RTWKILSFVLALPGVAVCIANAYMKMQ--QHSHEPPEFVAYSHLRIRTKKWPWGDGNHSL 84

Query: 138 FHNKHVNALPEGYE 151
           FHN H NALPEGYE
Sbjct: 85  FHNPHENALPEGYE 98


>sp|P10817|CX6A2_RAT Cytochrome c oxidase subunit 6A2, mitochondrial (Fragment)
           OS=Rattus norvegicus GN=Cox6a2 PE=1 SV=3
          Length = 94

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 80  WRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTLFH 139
           WR LT+  ALP  AL  +  ++       HH RPEF+   +L IR + F WGDGNHTLFH
Sbjct: 25  WRLLTFVLALPSVALCSLNCWMH----AGHHERPEFIPYHHLRIRTKPFSWGDGNHTLFH 80

Query: 140 NKHVNALPEGYEE 152
           N HVN LP GYE+
Sbjct: 81  NPHVNPLPTGYEQ 93


>sp|Q02221|CX6A2_HUMAN Cytochrome c oxidase subunit 6A2, mitochondrial OS=Homo sapiens
           GN=COX6A2 PE=2 SV=2
          Length = 97

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 45/74 (60%), Gaps = 4/74 (5%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R WR LT+  ALP  AL     YL       H  RPEF   ++L IR + +PWGDGNHTL
Sbjct: 26  RTWRLLTFVLALPSVALCTFNSYLH----SGHRPRPEFRPYQHLRIRTKPYPWGDGNHTL 81

Query: 138 FHNKHVNALPEGYE 151
           FHN HVN LP GYE
Sbjct: 82  FHNSHVNPLPTGYE 95


>sp|Q5RC38|CX6A2_PONAB Cytochrome c oxidase subunit 6A2, mitochondrial OS=Pongo abelii
           GN=COX6A2 PE=3 SV=1
          Length = 97

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 45/74 (60%), Gaps = 4/74 (5%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R WR LT+  ALP  AL     YL       H  RPEF   ++L IR + +PWGDGNHTL
Sbjct: 26  RTWRLLTFVLALPSVALCTFNSYLH----SGHRPRPEFRPYQHLRIRTKPYPWGDGNHTL 81

Query: 138 FHNKHVNALPEGYE 151
           FHN HVN LP GYE
Sbjct: 82  FHNTHVNPLPTGYE 95


>sp|P43023|CX6A2_MOUSE Cytochrome c oxidase subunit 6A2, mitochondrial OS=Mus musculus
           GN=Cox6a2 PE=1 SV=2
          Length = 97

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 80  WRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTLFH 139
           WR LT+  ALP  AL  +  ++       HH RPEF+   +L IR + F WGDGNHTLFH
Sbjct: 28  WRLLTFVLALPGVALCSLNCWMH----AGHHERPEFIPYHHLRIRTKPFAWGDGNHTLFH 83

Query: 140 NKHVNALPEGYE 151
           N HVN LP GYE
Sbjct: 84  NPHVNPLPTGYE 95


>sp|O13082|COX6A_CYPCA Cytochrome c oxidase subunit 6A, mitochondrial OS=Cyprinus carpio
           PE=3 SV=1
          Length = 102

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R W+ L++  ALP   +     Y++ QA    H  PEFV   +L IR + +PWGDGNH+L
Sbjct: 27  RTWKILSFVLALPGVGVCMANAYMKMQAHS--HDPPEFVPYPHLRIRTKPWPWGDGNHSL 84

Query: 138 FHNKHVNALPEGYE 151
           FHN H NALP GYE
Sbjct: 85  FHNAHTNALPTGYE 98


>sp|P07471|CX6A2_BOVIN Cytochrome c oxidase subunit 6A2, mitochondrial OS=Bos taurus
           GN=COX6A2 PE=1 SV=2
          Length = 97

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R WR LT+  ALP  AL  +  +L       H  RP F+   +L IR + F WGDGNHT 
Sbjct: 26  RTWRFLTFGLALPSVALCTLNSWLH----SGHRERPAFIPYHHLRIRTKPFSWGDGNHTF 81

Query: 138 FHNKHVNALPEGYEE 152
           FHN  VN LP GYE+
Sbjct: 82  FHNPRVNPLPTGYEK 96


>sp|Q20779|COX6A_CAEEL Probable cytochrome c oxidase subunit 6A, mitochondrial
           OS=Caenorhabditis elegans GN=tag-174 PE=3 SV=1
          Length = 128

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 77  NRLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHT 136
           +  W+ + +  ++PC AL     + +H+    H  RPE V+  +L +RN+ FPW DGNH+
Sbjct: 48  SETWKKIFFIASIPCLALTMYAAFKDHKKHMSHE-RPEHVEYAFLNVRNKPFPWSDGNHS 106

Query: 137 LFHNKHVNALPE-GYEED 153
           LFHNK    +P  G+E D
Sbjct: 107 LFHNKAEQFVPGVGFEAD 124


>sp|O74471|COX13_SCHPO Cytochrome c oxidase subunit 6A, mitochondrial
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=cox13 PE=3 SV=1
          Length = 130

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 54  EHQAEEAHHVRPEFVKREYLYIRNRLWRNLTYFGALPCCALVGV---YVYLEHQAEEEHH 110
           E QAEE H  R            +  W+ +TY+   P   L      Y+Y +HQ E   H
Sbjct: 42  EVQAEEEHAKRS-----------SEFWKKVTYYIGGPALILASANAYYIYCKHQ-EHAKH 89

Query: 111 VRPEFVKREYLYIRNRRFPWGDGNHTLFHNKHVNALPEGYE 151
           V        +  +R +++PWGDG+ TLF N  VN L +  E
Sbjct: 90  VEDTDPGYSFENLRFKKYPWGDGSKTLFWNDKVNHLKKDDE 130


>sp|P32799|COX13_YEAST Cytochrome c oxidase subunit 6A, mitochondrial OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=COX13 PE=1
           SV=1
          Length = 129

 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 77  NRLWRNLTYFGALPCCALVGVYVYL---EHQAEEEH--HVRPEFVKREY--LYIRNRRFP 129
           + +W  ++ + ALP  AL  V  Y    EH    EH  HV      R+Y  + IR++ F 
Sbjct: 48  SNMWVKISVWVALPAIALTAVNTYFVEKEHAEHREHLKHVPDSEWPRDYEFMNIRSKPFF 107

Query: 130 WGDGNHTLFHNKHVN 144
           WGDG+ TLF N  VN
Sbjct: 108 WGDGDKTLFWNPVVN 122


>sp|Q9T070|COX6A_ARATH Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis
           thaliana GN=COX6A PE=2 SV=1
          Length = 102

 Score = 40.0 bits (92), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 80  WRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWG-DGNHTLF 138
           W  +TY G   C AL  VYV       + HH   +     +++IRN+ FPWG DG   + 
Sbjct: 44  WEKITYLGIASCTALA-VYVL-----SKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVK 97

Query: 139 HNK 141
           HNK
Sbjct: 98  HNK 100



 Score = 30.8 bits (68), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 3  SRLGQMMMRKFSTSPA--MKSSAGNPDA--VKLWRNLTYFGALPCCALVGVYVYLEHQAE 58
          SR       K S +P     SSAG+ DA     W  +TY G   C AL  VYV       
Sbjct: 11 SRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTAL-AVYVL-----S 64

Query: 59 EAHHVRPEFVKREYLYIRNR 78
          + HH   +     +++IRN+
Sbjct: 65 KGHHHGEDPPAYPHMHIRNK 84


>sp|Q7CR84|FTSL_SALTY Cell division protein FtsL OS=Salmonella typhimurium (strain LT2
          / SGSC1412 / ATCC 700720) GN=ftsL PE=3 SV=1
          Length = 121

 Score = 32.7 bits (73), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 34 NLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYI-RNRL---WRNL 83
          +L  FG LP C  + + +        AHH R    +RE L + R+ L   WRNL
Sbjct: 31 DLLRFGKLPLCLFICIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNL 84


>sp|P0AEN7|FTSL_SHIFL Cell division protein FtsL OS=Shigella flexneri GN=ftsL PE=3 SV=1
          Length = 121

 Score = 32.7 bits (73), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 34 NLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYI-RNRL---WRNL 83
          +L  FG LP C  + + +        AHH R    +RE L + R+ L   WRNL
Sbjct: 31 DLLRFGKLPLCLFICIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNL 84


>sp|Q32K09|FTSL_SHIDS Cell division protein FtsL OS=Shigella dysenteriae serotype 1
          (strain Sd197) GN=ftsL PE=3 SV=1
          Length = 121

 Score = 32.7 bits (73), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 34 NLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYI-RNRL---WRNL 83
          +L  FG LP C  + + +        AHH R    +RE L + R+ L   WRNL
Sbjct: 31 DLLRFGKLPLCLFICIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNL 84


>sp|P0AEN4|FTSL_ECOLI Cell division protein FtsL OS=Escherichia coli (strain K12)
          GN=ftsL PE=1 SV=1
          Length = 121

 Score = 32.7 bits (73), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 34 NLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYI-RNRL---WRNL 83
          +L  FG LP C  + + +        AHH R    +RE L + R+ L   WRNL
Sbjct: 31 DLLRFGKLPLCLFICIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNL 84


>sp|P0AEN5|FTSL_ECOL6 Cell division protein FtsL OS=Escherichia coli O6:H1 (strain
          CFT073 / ATCC 700928 / UPEC) GN=ftsL PE=3 SV=1
          Length = 121

 Score = 32.7 bits (73), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 34 NLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYI-RNRL---WRNL 83
          +L  FG LP C  + + +        AHH R    +RE L + R+ L   WRNL
Sbjct: 31 DLLRFGKLPLCLFICIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNL 84


>sp|P0AEN6|FTSL_ECO57 Cell division protein FtsL OS=Escherichia coli O157:H7 GN=ftsL
          PE=3 SV=1
          Length = 121

 Score = 32.7 bits (73), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 34 NLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYI-RNRL---WRNL 83
          +L  FG LP C  + + +        AHH R    +RE L + R+ L   WRNL
Sbjct: 31 DLLRFGKLPLCLFICIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNL 84


>sp|B9DW73|MUTS_STRU0 DNA mismatch repair protein MutS OS=Streptococcus uberis (strain
           ATCC BAA-854 / 0140J) GN=mutS PE=3 SV=1
          Length = 847

 Score = 32.3 bits (72), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 53  LEHQAEEAHHVRPEFVKREYLYIRNRLWRNLTYFGALP-CCALVGVYVYLEHQAEEEHHV 111
           +E Q  EA     +     ++ IR ++   +     L    A V V   L + AE+ H+V
Sbjct: 496 IEGQMLEAREESAQLEYDIFMRIREKVETYIDRLQTLAKAIATVDVLQGLAYVAEKNHYV 555

Query: 112 RPEFVKREYLYIRNRR 127
           RPEF  ++ + I+N R
Sbjct: 556 RPEFASQKVITIQNGR 571



 Score = 30.0 bits (66), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 45  ALVGVYVYLEHQAEEAHHVRPEFVKREYLYIRN 77
           A V V   L + AE+ H+VRPEF  ++ + I+N
Sbjct: 537 ATVDVLQGLAYVAEKNHYVRPEFASQKVITIQN 569


>sp|Q1G938|MUTS_LACDA DNA mismatch repair protein MutS OS=Lactobacillus delbrueckii
           subsp. bulgaricus (strain ATCC 11842 / DSM 20081)
           GN=mutS PE=3 SV=1
          Length = 856

 Score = 30.8 bits (68), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 93  ALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFP 129
           A + V+V     AEE+++ RP F  +  + ++N R P
Sbjct: 542 AALDVFVAFAQDAEEKNYCRPSFSSKNEIAVKNGRHP 578


>sp|Q048Y4|MUTS_LACDB DNA mismatch repair protein MutS OS=Lactobacillus delbrueckii
           subsp. bulgaricus (strain ATCC BAA-365) GN=mutS PE=3
           SV=1
          Length = 856

 Score = 30.8 bits (68), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 93  ALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFP 129
           A + V+V     AEE+++ RP F  +  + ++N R P
Sbjct: 542 AALDVFVAFAQDAEEKNYCRPSFSSKNEIAVKNGRHP 578


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,600,359
Number of Sequences: 539616
Number of extensions: 2441840
Number of successful extensions: 6025
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5961
Number of HSP's gapped (non-prelim): 50
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)