Query psy17595
Match_columns 153
No_of_seqs 197 out of 355
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 18:05:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00925 Cyt_c_Oxidase_VIa Cyto 100.0 2.1E-42 4.4E-47 249.5 6.5 75 76-151 12-86 (86)
2 PF02046 COX6A: Cytochrome c o 100.0 1.1E-36 2.4E-41 230.0 4.8 71 76-146 41-115 (116)
3 KOG3469|consensus 100.0 7.4E-36 1.6E-40 224.0 4.3 76 77-153 37-112 (112)
4 PLN02595 cytochrome c oxidase 99.9 5.7E-25 1.2E-29 162.8 6.3 61 76-142 40-101 (102)
5 cd00925 Cyt_c_Oxidase_VIa Cyto 99.9 1.3E-23 2.9E-28 151.7 2.0 61 25-86 9-73 (86)
6 PF02046 COX6A: Cytochrome c o 99.8 1.8E-22 3.9E-27 152.6 1.0 63 24-86 37-107 (116)
7 KOG3469|consensus 99.7 7.9E-19 1.7E-23 132.1 2.5 80 1-81 3-90 (112)
8 PLN02595 cytochrome c oxidase 99.6 8.1E-16 1.8E-20 114.1 2.9 50 25-81 37-89 (102)
9 PF04279 IspA: Intracellular s 72.3 8.5 0.00018 30.8 4.9 60 28-105 112-171 (176)
10 PF13124 DUF3963: Protein of u 60.5 8.3 0.00018 24.2 2.1 20 79-98 18-38 (40)
11 PRK00259 intracellular septati 58.0 14 0.0003 29.9 3.6 53 29-99 113-165 (179)
12 TIGR00997 ispZ intracellular s 51.8 20 0.00043 29.1 3.6 53 28-98 112-164 (178)
13 KOG3918|consensus 43.3 36 0.00078 26.3 3.5 45 29-89 3-47 (129)
14 KOG1419|consensus 34.3 21 0.00045 34.4 1.2 38 35-72 235-272 (654)
15 COG4597 BatB ABC-type amino ac 32.6 93 0.002 28.1 4.9 80 36-134 96-187 (397)
16 KOG0761|consensus 30.4 24 0.00052 31.8 0.9 49 25-92 110-161 (361)
17 PF12622 NpwBP: mRNA biogenesi 29.8 30 0.00065 22.4 1.1 14 133-146 1-14 (48)
18 COG2917 Intracellular septatio 27.0 46 0.001 27.3 2.0 52 28-97 112-163 (180)
19 smart00704 ZnF_CDGSH CDGSH-typ 23.7 49 0.0011 20.3 1.2 14 123-136 20-33 (38)
No 1
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=100.00 E-value=2.1e-42 Score=249.53 Aligned_cols=75 Identities=57% Similarity=1.082 Sum_probs=72.1
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHhhhhhhhccCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCCCCC
Q psy17595 76 RNRLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTLFHNKHVNALPEGYE 151 (153)
Q Consensus 76 rtK~WkkiS~fVaiP~v~l~~~n~y~~~~eh~~hh~~pe~~~Y~yl~iR~K~FPWGdG~~tLFhNp~~N~lp~gyE 151 (153)
++++||+||+|||+|||+||++|+|+.+++|++ +++|||++|+|||||+|+||||||||||||||++|+||+|||
T Consensus 12 ~~~~WkkiS~~va~P~v~l~~~n~y~~~~eh~~-~~~pe~~~Y~yl~IR~K~FpWGDG~~tlFhN~~vN~lp~gye 86 (86)
T cd00925 12 TSELWKKISFYVALPAVALCMLNAYLKHKEHEE-HERPEFVEYEHLNIRTKPFPWGDGNKTLFHNPHVNALPTGYE 86 (86)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhhhcccc-cCCCCCCCCccceeecCCCCCCCCCcccccCCCcCCCCCCCC
Confidence 789999999999999999999999999998765 679999999999999999999999999999999999999998
No 2
>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....
Probab=100.00 E-value=1.1e-36 Score=230.04 Aligned_cols=71 Identities=54% Similarity=1.019 Sum_probs=47.1
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHhhhhhhhc--c--CCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCC
Q psy17595 76 RNRLWRNLTYFGALPCCALVGVYVYLEHQAEEEH--H--VRPEFVKREYLYIRNRRFPWGDGNHTLFHNKHVNAL 146 (153)
Q Consensus 76 rtK~WkkiS~fVaiP~v~l~~~n~y~~~~eh~~h--h--~~pe~~~Y~yl~iR~K~FPWGdG~~tLFhNp~~N~l 146 (153)
.+|+||+||+|||||+|+|+++|+|..+.+|++| | ++|||++|||||||+|+||||||||||||||++|+|
T Consensus 41 ~~~~Wk~iS~~v~iP~i~l~~~n~~~l~~~H~eH~~h~~~~pe~~~Y~yl~iR~K~FPWGDG~~tLFhNp~~N~l 115 (116)
T PF02046_consen 41 TAKLWKKISFFVAIPAIALCMLNAYYLEKEHHEHREHLPERPEFVPYPYLRIRTKPFPWGDGNHTLFHNPHVNAL 115 (116)
T ss_dssp SHHHHHHHHHHTHHHHHHHHHHHHH-HSTS-----------------TTSS--SS--SSTTSSS-TT--TTT-EB
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCccceecCCCCCCCCCCcCCccCCCcCCC
Confidence 7899999999999999999999999777776653 2 689999999999999999999999999999999987
No 3
>KOG3469|consensus
Probab=100.00 E-value=7.4e-36 Score=224.02 Aligned_cols=76 Identities=58% Similarity=1.052 Sum_probs=73.1
Q ss_pred hhhhhhhhhhchhhHHHHHHHHHHHhhhhhhhccCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q psy17595 77 NRLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTLFHNKHVNALPEGYEED 153 (153)
Q Consensus 77 tK~WkkiS~fVaiP~v~l~~~n~y~~~~eh~~hh~~pe~~~Y~yl~iR~K~FPWGdG~~tLFhNp~~N~lp~gyE~e 153 (153)
+++|++||+|+|+||++|||+|+|+++++|.+ |++||++.|+|||||+|+|||||||+||||||++|+||+|||+|
T Consensus 37 s~~Wkkit~~~alP~~al~~~n~y~~~~~~~e-~~~~e~~~Y~fl~iR~K~fpWgdG~~tLfhN~~vn~l~~~~E~d 112 (112)
T KOG3469|consen 37 SRTWKKITFFVALPAVALAMYNAYLGHGHHPE-HERPEFRAYEFLNIRNKPFPWGDGNKTLFHNPHVNPLPTGYEHD 112 (112)
T ss_pred hhhhhheeeeeeccHHHHHHHHHHHhhccCcc-cCCccccccchhhhhcCCCCCCCCcchhccCcccccCcccccCC
Confidence 68999999999999999999999999988765 88999999999999999999999999999999999999999986
No 4
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=99.91 E-value=5.7e-25 Score=162.82 Aligned_cols=61 Identities=34% Similarity=0.716 Sum_probs=45.7
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHhhhhhhhccCCCCCCCCCccccccCCCCCC-CCCCCCccCCC
Q psy17595 76 RNRLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWG-DGNHTLFHNKH 142 (153)
Q Consensus 76 rtK~WkkiS~fVaiP~v~l~~~n~y~~~~eh~~hh~~pe~~~Y~yl~iR~K~FPWG-dG~~tLFhNp~ 142 (153)
.+++||+||+|+++||++ +|+|+.+++|++ + +|+++|||||||||+|||| ||++++|||.+
T Consensus 40 ~a~~WkklS~~~v~~c~~---lnaY~l~~eH~~-~--e~p~~Y~yLrIRtK~FPWG~DG~~e~~hn~~ 101 (102)
T PLN02595 40 EAAKWEKITYLGIASCTA---LAVYVLSKGHHH-G--EDPPAYPYMHIRNKEFPWGPDGLFEVKHNKE 101 (102)
T ss_pred hhhhhhhhhHHHhHHHHH---HHHHHhhhcccc-C--CCCCCCCcceeecCCCCCCCCcccccccccC
Confidence 566788888876444422 367777666543 3 4445999999999999999 99999999974
No 5
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=99.87 E-value=1.3e-23 Score=151.71 Aligned_cols=61 Identities=41% Similarity=0.787 Sum_probs=54.3
Q ss_pred CchhhhhhhhhheecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhhhhhhhhh--hh--hhhhh
Q psy17595 25 NPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYIRNRL--WR--NLTYF 86 (153)
Q Consensus 25 ~~~~~~lWkkls~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~yl~irtK~--Wk--kiS~f 86 (153)
.++++++|||||||||+|||+|||+|+|++++||++ +++|||++|+|||||+|. |+ +-|+|
T Consensus 9 ~~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~eh~~-~~~pe~~~Y~yl~IR~K~FpWGDG~~tlF 73 (86)
T cd00925 9 AAGTSELWKKISFYVALPAVALCMLNAYLKHKEHEE-HERPEFVEYEHLNIRTKPFPWGDGNKTLF 73 (86)
T ss_pred ccchhhhhhhhhhhhHHHHHHHHHHHHHhhhhcccc-cCCCCCCCCccceeecCCCCCCCCCcccc
Confidence 457899999999999999999999999999998754 689999999999999998 74 45665
No 6
>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....
Probab=99.84 E-value=1.8e-22 Score=152.65 Aligned_cols=63 Identities=37% Similarity=0.704 Sum_probs=40.6
Q ss_pred CCchhhhhhhhhheecchhhHHHHHHHHHHhhhhhhcC----CCCCcccchhhhhhhhhh--h--hhhhhh
Q psy17595 24 GNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEAH----HVRPEFVKREYLYIRNRL--W--RNLTYF 86 (153)
Q Consensus 24 ~~~~~~~lWkkls~~va~P~i~l~~~n~y~~~~eh~~~----~~~pe~~~Y~yl~irtK~--W--kkiS~f 86 (153)
+.++++++||+||||||+|+|+||++|+|.++++|++| .++|||++|+|||||+|. | ++-|+|
T Consensus 37 ha~~~~~~Wk~iS~~v~iP~i~l~~~n~~~l~~~H~eH~~h~~~~pe~~~Y~yl~iR~K~FPWGDG~~tLF 107 (116)
T PF02046_consen 37 HAEETAKLWKKISFFVAIPAIALCMLNAYYLEKEHHEHREHLPERPEFVPYPYLRIRTKPFPWGDGNHTLF 107 (116)
T ss_dssp TSSSSHHHHHHHHHHTHHHHHHHHHHHHH-HSTS-----------------TTSS--SS--SSTTSSS-TT
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCccceecCCCCCCCCCCcCCc
Confidence 34788999999999999999999999999888877533 378999999999999998 8 567776
No 7
>KOG3469|consensus
Probab=99.73 E-value=7.9e-19 Score=132.10 Aligned_cols=80 Identities=33% Similarity=0.571 Sum_probs=62.1
Q ss_pred ChhHHhHHHHHhhhcCcccc------cCCCCchhhhhhhhhheecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhhhh
Q psy17595 1 MASRLGQMMMRKFSTSPAMK------SSAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLY 74 (153)
Q Consensus 1 m~~~~~~~~~r~~~~~~~~~------~~~~~~~~~~lWkkls~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~yl~ 74 (153)
|++.+.++..|++..++.+. ..+..++.+++|||||||||+||++|||+|+|+.+++|+ +|++||+++|+|||
T Consensus 3 l~~~~~rSv~r~~~~ks~~~~~~~~~~~~~~e~~s~~Wkkit~~~alP~~al~~~n~y~~~~~~~-e~~~~e~~~Y~fl~ 81 (112)
T KOG3469|consen 3 LAVPLTRSVTRRLGLKSARHMYRRAAVAGFKEGGSRTWKKITFFVALPAVALAMYNAYLGHGHHP-EHERPEFRAYEFLN 81 (112)
T ss_pred cchhhcccccccccccccccccchhhhhhhcchhhhhhhheeeeeeccHHHHHHHHHHHhhccCc-ccCCccccccchhh
Confidence 34445566666666555542 222235557999999999999999999999999998764 47899999999999
Q ss_pred hhhhh--hh
Q psy17595 75 IRNRL--WR 81 (153)
Q Consensus 75 irtK~--Wk 81 (153)
||+|. |.
T Consensus 82 iR~K~fpWg 90 (112)
T KOG3469|consen 82 IRNKPFPWG 90 (112)
T ss_pred hhcCCCCCC
Confidence 99997 74
No 8
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=99.58 E-value=8.1e-16 Score=114.13 Aligned_cols=50 Identities=24% Similarity=0.472 Sum_probs=39.9
Q ss_pred CchhhhhhhhhheecchhhHHHHH-HHHHHhhhhhhcCCCCCcccchhhhhhhhhh--hh
Q psy17595 25 NPDAVKLWRNLTYFGALPCCALVG-VYVYLEHQAEEAHHVRPEFVKREYLYIRNRL--WR 81 (153)
Q Consensus 25 ~~~~~~lWkkls~~va~P~i~l~~-~n~y~~~~eh~~~~~~pe~~~Y~yl~irtK~--Wk 81 (153)
.++++++|||||||+ |++|| +|+|++++||++ + ||+++|+|||||+|. |+
T Consensus 37 ~a~~a~~WkklS~~~----v~~c~~lnaY~l~~eH~~-~--e~p~~Y~yLrIRtK~FPWG 89 (102)
T PLN02595 37 DAYEAAKWEKITYLG----IASCTALAVYVLSKGHHH-G--EDPPAYPYMHIRNKEFPWG 89 (102)
T ss_pred cchhhhhhhhhhHHH----hHHHHHHHHHHhhhcccc-C--CCCCCCCcceeecCCCCCC
Confidence 346899999999996 66667 499999988743 3 444599999999998 76
No 9
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=72.26 E-value=8.5 Score=30.79 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=46.4
Q ss_pred hhhhhhhhheecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhhhhhhhhhhhhhhhhchhhHHHHHHHHHHHhhhh
Q psy17595 28 AVKLWRNLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYIRNRLWRNLTYFGALPCCALVGVYVYLEHQA 105 (153)
Q Consensus 28 ~~~lWkkls~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~yl~irtK~WkkiS~fVaiP~v~l~~~n~y~~~~e 105 (153)
..+.||++|+.-|+=-++++.+|.|..-.- ++..|-+...|+..|..++.++-...--..
T Consensus 112 ~~~~W~~lt~~W~~fF~~~a~lN~~va~~~------------------S~~~Wv~fk~fG~~~l~~~f~i~q~~~l~k 171 (176)
T PF04279_consen 112 PDRGWRRLTLRWALFFLFLAALNEYVAYNF------------------SEDTWVNFKVFGLMGLTFLFVIAQIPYLRK 171 (176)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999975421 566899999998888888777655433333
No 10
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=60.54 E-value=8.3 Score=24.20 Aligned_cols=20 Identities=40% Similarity=0.715 Sum_probs=17.0
Q ss_pred hh-hhhhhhchhhHHHHHHHH
Q psy17595 79 LW-RNLTYFGALPCCALVGVY 98 (153)
Q Consensus 79 ~W-kkiS~fVaiP~v~l~~~n 98 (153)
+| |+||++.|+-.++|.+++
T Consensus 18 kwirnit~cfal~vv~lvslw 38 (40)
T PF13124_consen 18 KWIRNITFCFALLVVVLVSLW 38 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 56 899999999988888765
No 11
>PRK00259 intracellular septation protein A; Reviewed
Probab=58.01 E-value=14 Score=29.87 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=41.7
Q ss_pred hhhhhhhheecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhhhhhhhhhhhhhhhhchhhHHHHHHHHH
Q psy17595 29 VKLWRNLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYIRNRLWRNLTYFGALPCCALVGVYV 99 (153)
Q Consensus 29 ~~lWkkls~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~yl~irtK~WkkiS~fVaiP~v~l~~~n~ 99 (153)
.+.||++|+.-|+=.++.+.+|.|..-.. +++.|-+.-.|..+|...+.++-.
T Consensus 113 ~~~W~~lt~~W~~fF~~~a~~n~~v~~~~------------------s~~~Wv~fK~fG~~~lt~~f~~~q 165 (179)
T PRK00259 113 DPVWRKLNLAWALFFIFCGLLNLYVARNF------------------STDTWVNFKVFGLTGLTLVFTLLQ 165 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 35599999999999999999999985431 556898888888777777666533
No 12
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=51.78 E-value=20 Score=29.05 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=42.4
Q ss_pred hhhhhhhhheecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhhhhhhhhhhhhhhhhchhhHHHHHHHH
Q psy17595 28 AVKLWRNLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYIRNRLWRNLTYFGALPCCALVGVY 98 (153)
Q Consensus 28 ~~~lWkkls~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~yl~irtK~WkkiS~fVaiP~v~l~~~n 98 (153)
..+.|+++|+.-++=.++++.+|.|.--+ -+++.|-+.-.|+.+|...+.++-
T Consensus 112 p~~~W~~L~~~W~~fF~~~a~lN~~va~~------------------~s~~~WV~FK~fG~~~lt~vF~i~ 164 (178)
T TIGR00997 112 TEKGWLKLNFRWAGFFIFMAVLNEYVATN------------------FSEEIWVNFKVFGVTILTFIFIIA 164 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------CCccHHHHHHHHHHHHHHHHHHHH
Confidence 44889999999999999999999888432 156689998888888887776553
No 13
>KOG3918|consensus
Probab=43.26 E-value=36 Score=26.30 Aligned_cols=45 Identities=24% Similarity=0.256 Sum_probs=27.7
Q ss_pred hhhhhhhheecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhhhhhhhhhhhhhhhhchh
Q psy17595 29 VKLWRNLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYIRNRLWRNLTYFGAL 89 (153)
Q Consensus 29 ~~lWkkls~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~yl~irtK~WkkiS~fVai 89 (153)
+.+||+|++...+ +++=| ||...| | -.|||.+.+.|..+..=+.+
T Consensus 3 s~l~~~l~~i~lf-aLaHa---AfSAAq-H-----------R~YlRLTEqe~~sLP~Divl 47 (129)
T KOG3918|consen 3 STLYRLLTIISLF-ALAHA---AFSAAQ-H-----------RFYLRLTEQEFISLPSDIVL 47 (129)
T ss_pred HHHHHHHHHHHHH-HHHHH---HHHHHH-H-----------HHHHhhhhcccccCcHHHHH
Confidence 5789998865432 34434 344332 2 26999999999776554433
No 14
>KOG1419|consensus
Probab=34.27 E-value=21 Score=34.35 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=31.7
Q ss_pred hheecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhh
Q psy17595 35 LTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREY 72 (153)
Q Consensus 35 ls~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~y 72 (153)
-++|+++=++|.++.-||+.++.+.++..+-||.-|..
T Consensus 235 Tt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyAD 272 (654)
T KOG1419|consen 235 TTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYAD 272 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHH
Confidence 36889999999999999999998765556778888864
No 15
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=32.57 E-value=93 Score=28.12 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=47.3
Q ss_pred heecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhhhhhhhhhh--hhhhh-----hchhhHHHHHHHHHHHhhhhhhh
Q psy17595 36 TYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYIRNRLW--RNLTY-----FGALPCCALVGVYVYLEHQAEEE 108 (153)
Q Consensus 36 s~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~yl~irtK~W--kkiS~-----fVaiP~v~l~~~n~y~~~~eh~~ 108 (153)
|+.||+-+|+.+.+--++..-.. =+.+| +|+|. |=-+|.++...+|-+..-.-=.
T Consensus 96 Tl~Va~~gIi~atIiGfliGIaR-----------------LS~NWLi~kl~~vYvEiFRNiPpLL~IfFWYf~Vl~~LP- 157 (397)
T COG4597 96 TLLVAALGIITATIIGFLIGIAR-----------------LSDNWLIRKLSTVYVEIFRNIPPLLQIFFWYFGVLSVLP- 157 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------hchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhCC-
Confidence 67888899999888877765432 22356 55543 3335555544444332211100
Q ss_pred ccCCC--CCCCCCccccccCCCC---CCCCC
Q psy17595 109 HHVRP--EFVKREYLYIRNRRFP---WGDGN 134 (153)
Q Consensus 109 hh~~p--e~~~Y~yl~iR~K~FP---WGdG~ 134 (153)
..|. +-+...||+.|---|| ||||-
T Consensus 158 -~ar~s~~l~~~~~L~nrG~~~p~P~~geG~ 187 (397)
T COG4597 158 -GARQSVSLPDLIFLSNRGLYFPSPQWGEGF 187 (397)
T ss_pred -ChhhccccccceeecccccccCCcccccch
Confidence 0011 2347789999999999 99983
No 16
>KOG0761|consensus
Probab=30.40 E-value=24 Score=31.80 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=33.5
Q ss_pred Cchhhhhhhhhh--eecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhhhhhhhhhhh-hhhhhchhhHH
Q psy17595 25 NPDAVKLWRNLT--YFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYIRNRLWR-NLTYFGALPCC 92 (153)
Q Consensus 25 ~~~~~~lWkkls--~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~yl~irtK~Wk-kiS~fVaiP~v 92 (153)
++|...||+-|+ ++.++|+.++= |+.||+++-+.+.|- -...++..|.+
T Consensus 110 hEGirsLWsGL~ptlvmalPat~iY-------------------f~~Yd~lr~~l~~~~~~~~~~~p~~~v 161 (361)
T KOG0761|consen 110 HEGIRSLWSGLSPTLVMALPATGIY-------------------FTGYDQLRARLEEKSRTPATTAPVPLV 161 (361)
T ss_pred hhhhhhhhccCCchheeeccccEEE-------------------EehHHHHHHHHHHhhcCCcccccHHHH
Confidence 467778888774 45677777632 678999999998887 44444544433
No 17
>PF12622 NpwBP: mRNA biogenesis factor
Probab=29.81 E-value=30 Score=22.44 Aligned_cols=14 Identities=14% Similarity=0.453 Sum_probs=12.1
Q ss_pred CCCCCccCCCCCCC
Q psy17595 133 GNHTLFHNKHVNAL 146 (153)
Q Consensus 133 G~~tLFhNp~~N~l 146 (153)
|.+|.|.||..|++
T Consensus 1 ~~kSiyydP~~NP~ 14 (48)
T PF12622_consen 1 PEKSIYYDPELNPL 14 (48)
T ss_pred CCcceecCCccCCC
Confidence 56899999999985
No 18
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=27.03 E-value=46 Score=27.35 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=39.0
Q ss_pred hhhhhhhhheecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhhhhhhhhhhhhhhhhchhhHHHHHHH
Q psy17595 28 AVKLWRNLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYIRNRLWRNLTYFGALPCCALVGV 97 (153)
Q Consensus 28 ~~~lWkkls~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~yl~irtK~WkkiS~fVaiP~v~l~~~ 97 (153)
..+.|+||++-=++--+..+.+|-|...+ ..+..|-+--.|..+|...+..+
T Consensus 112 p~~~W~~Ln~~W~~FFlf~ai~N~yV~~~------------------fs~d~WV~FKvfG~~~ltlvf~l 163 (180)
T COG2917 112 PEEVWRKLNLRWALFFLFCAIANEYVARN------------------FSTDTWVNFKVFGLTPLTLIFTL 163 (180)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------CCCCeEEEeehhhhhHHHHHHHH
Confidence 34889999999999999999999998642 14557877777766666655444
No 19
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=23.66 E-value=49 Score=20.32 Aligned_cols=14 Identities=43% Similarity=0.930 Sum_probs=12.1
Q ss_pred cccCCCCCCCCCCC
Q psy17595 123 IRNRRFPWGDGNHT 136 (153)
Q Consensus 123 iR~K~FPWGdG~~t 136 (153)
-++|.+|+=||.|.
T Consensus 20 ~~S~~~PfCDGsH~ 33 (38)
T smart00704 20 GRSKNFPYCDGSHK 33 (38)
T ss_pred CCCCCCCccCCccc
Confidence 58999999999874
Done!