Query psy17595
Match_columns 153
No_of_seqs 197 out of 355
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 18:06:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_G Cytochrome C oxidase po 100.0 4.6E-43 1.6E-47 251.4 6.6 74 76-153 12-85 (85)
2 2y69_G Cytochrome C oxidase po 100.0 1.5E-42 5E-47 254.0 6.6 74 76-153 24-97 (97)
3 2y69_G Cytochrome C oxidase po 99.8 1.6E-22 5.6E-27 147.8 0.7 57 26-86 22-82 (97)
4 1v54_G Cytochrome C oxidase po 99.8 5E-22 1.7E-26 142.2 0.7 57 26-86 10-70 (85)
5 2ksr_A Neuronal acetylcholine 48.4 5.6 0.00019 30.4 1.0 40 60-99 5-47 (164)
6 2a2m_A Hypothetical protein BT 34.5 11 0.00037 30.3 0.7 29 110-139 11-39 (258)
7 3d31_C Sulfate/molybdate ABC t 32.5 21 0.00073 28.1 2.1 33 63-95 14-49 (295)
8 4ezf_A Mitoneet, CDGSH iron-su 24.6 16 0.00054 25.2 0.0 14 123-136 44-57 (77)
9 3lay_A Zinc resistance-associa 20.9 21 0.0007 27.7 0.0 27 76-102 24-51 (175)
10 3s2r_A AT5G51720/MIO24_14; red 17.4 28 0.00096 24.3 0.0 19 118-136 46-65 (83)
No 1
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=100.00 E-value=4.6e-43 Score=251.38 Aligned_cols=74 Identities=47% Similarity=0.826 Sum_probs=70.2
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHhhhhhhhccCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q psy17595 76 RNRLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTLFHNKHVNALPEGYEED 153 (153)
Q Consensus 76 rtK~WkkiS~fVaiP~v~l~~~n~y~~~~eh~~hh~~pe~~~Y~yl~iR~K~FPWGdG~~tLFhNp~~N~lp~gyE~e 153 (153)
++++||+||+|||+|+|+||++|+|+.+++ |++|||++|+|||||+|+||||||||||||||++|+||+|||||
T Consensus 12 ~~~~Wkkis~~va~P~v~l~~~n~y~~~~e----~~~pE~~~Y~yl~IR~K~FPWGdGd~tLFhN~~~N~lp~gyE~~ 85 (85)
T 1v54_G 12 GARTWRFLTFGLALPSVALCTLNSWLHSGH----RERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEKP 85 (85)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHTTSCSC----CCCCCCCCCTTSSCCSSCCSSTTSSSCTTCCTTTCCBTTBCCC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCCCCCCCchhheecCCCCCCCCCcCcccCCCcCCCCCCCCCC
Confidence 689999999999999999999999998876 55899999999999999999999999999999999999999997
No 2
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=100.00 E-value=1.5e-42 Score=254.04 Aligned_cols=74 Identities=47% Similarity=0.826 Sum_probs=70.2
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHhhhhhhhccCCCCCCCCCccccccCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q psy17595 76 RNRLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTLFHNKHVNALPEGYEED 153 (153)
Q Consensus 76 rtK~WkkiS~fVaiP~v~l~~~n~y~~~~eh~~hh~~pe~~~Y~yl~iR~K~FPWGdG~~tLFhNp~~N~lp~gyE~e 153 (153)
++++||+||+|||+|+|+||++|+|+.+++ |++|||++|+|||||+|+||||||||||||||++|+||+|||||
T Consensus 24 ~~~~WkkiS~~va~P~v~l~~~n~y~~~~e----h~~~E~~~Y~yl~IR~K~FPWGDG~~tLFhNp~~N~lp~GyE~~ 97 (97)
T 2y69_G 24 GARTWRFLTFGLALPSVALCTLNSWLHSGH----RERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEKP 97 (97)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHTTSCSC----CCCCCCCCCTTSSCCSSCCSSTTSSSCTTCCTTTCCBTTBSCC-
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCCCCCCchhhhccCCCCCCCCCcCcccCCCcCCCCCCCCCC
Confidence 689999999999999999999999999876 45899999999999999999999999999999999999999997
No 3
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=99.84 E-value=1.6e-22 Score=147.83 Aligned_cols=57 Identities=33% Similarity=0.587 Sum_probs=51.0
Q ss_pred chhhhhhhhhheecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhhhhhhhhh--hhh--hhhh
Q psy17595 26 PDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYIRNRL--WRN--LTYF 86 (153)
Q Consensus 26 ~~~~~lWkkls~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~yl~irtK~--Wkk--iS~f 86 (153)
++++++|||||||||+|+|+|||+|+|++++| |+||||++|+|||||+|. |+. -|+|
T Consensus 22 ~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~e----h~~~E~~~Y~yl~IR~K~FPWGDG~~tLF 82 (97)
T 2y69_G 22 GTGARTWRFLTFGLALPSVALCTLNSWLHSGH----RERPAFIPYHHLRIRTKPFSWGDGNHTFF 82 (97)
T ss_dssp SCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSC----CCCCCCCCCTTSSCCSSCCSSTTSSSCTT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCCCCCCchhhhccCCCCCCCCCcCcc
Confidence 57799999999999999999999999999876 368999999999999998 864 3666
No 4
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=99.83 E-value=5e-22 Score=142.23 Aligned_cols=57 Identities=33% Similarity=0.587 Sum_probs=51.3
Q ss_pred chhhhhhhhhheecchhhHHHHHHHHHHhhhhhhcCCCCCcccchhhhhhhhhh--hhh--hhhh
Q psy17595 26 PDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVKREYLYIRNRL--WRN--LTYF 86 (153)
Q Consensus 26 ~~~~~lWkkls~~va~P~i~l~~~n~y~~~~eh~~~~~~pe~~~Y~yl~irtK~--Wkk--iS~f 86 (153)
++++++|||||||||+|+|+|||+|+|++++| |+||||++|+|||||+|. |+. -|+|
T Consensus 10 ~~~~~~Wkkis~~va~P~v~l~~~n~y~~~~e----~~~pE~~~Y~yl~IR~K~FPWGdGd~tLF 70 (85)
T 1v54_G 10 GTGARTWRFLTFGLALPSVALCTLNSWLHSGH----RERPAFIPYHHLRIRTKPFSWGDGNHTFF 70 (85)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSC----CCCCCCCCCTTSSCCSSCCSSTTSSSCTT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCCCCCCCchhheecCCCCCCCCCcCcc
Confidence 57899999999999999999999999999875 478999999999999998 864 3666
No 5
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=48.36 E-value=5.6 Score=30.43 Aligned_cols=40 Identities=20% Similarity=0.469 Sum_probs=13.2
Q ss_pred cCCCCCcccchhhhhhhhhhhhhhhhhc---hhhHHHHHHHHH
Q psy17595 60 AHHVRPEFVKREYLYIRNRLWRNLTYFG---ALPCCALVGVYV 99 (153)
Q Consensus 60 ~~~~~pe~~~Y~yl~irtK~WkkiS~fV---aiP~v~l~~~n~ 99 (153)
|||..+.--+|+-+...-..-|+..+|+ .+||+++..+..
T Consensus 5 ~~~~~~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~ 47 (164)
T 2ksr_A 5 HHHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAI 47 (164)
T ss_dssp --------------------CCCTHHHHHHTHHHHHHHHHHHH
T ss_pred cCCCCCCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHh
Confidence 4444444446777666666667766663 579887766543
No 6
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=34.48 E-value=11 Score=30.26 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=15.1
Q ss_pred cCCCCCCCCCccccccCCCCCCCCCCCCcc
Q psy17595 110 HVRPEFVKREYLYIRNRRFPWGDGNHTLFH 139 (153)
Q Consensus 110 h~~pe~~~Y~yl~iR~K~FPWGdG~~tLFh 139 (153)
|+--+|. -..||+|+...|||.|+-.|=|
T Consensus 11 ~~~~~~~-~~~~~~~~~~~~~~~~~gpl~~ 39 (258)
T 2a2m_A 11 HHMNDFK-NQWLRKRTFAIPASRLTGRLTT 39 (258)
T ss_dssp ------------CCCCCCCCGGGCCGGGTT
T ss_pred hhhhhHH-HHHHHHhhcccccccCCCCccC
Confidence 4455664 5789999999999998776544
No 7
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=32.52 E-value=21 Score=28.15 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=6.1
Q ss_pred CCCcccchhhhhhhhhh---hhhhhhhchhhHHHHH
Q psy17595 63 VRPEFVKREYLYIRNRL---WRNLTYFGALPCCALV 95 (153)
Q Consensus 63 ~~pe~~~Y~yl~irtK~---WkkiS~fVaiP~v~l~ 95 (153)
+-|+...+++++.+.+. ++...+...+|+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 49 (295)
T 3d31_C 14 SGENLYFQGHMKAKNRKTRKFEPLTFVFSFLLLVLF 49 (295)
T ss_dssp ----------------------CHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCccccchHHHHHHHHHHHH
Confidence 35788999999865543 3333334445554433
No 8
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=24.63 E-value=16 Score=25.22 Aligned_cols=14 Identities=50% Similarity=1.068 Sum_probs=12.2
Q ss_pred cccCCCCCCCCCCC
Q psy17595 123 IRNRRFPWGDGNHT 136 (153)
Q Consensus 123 iR~K~FPWGdG~~t 136 (153)
=|+|.|||=||.|.
T Consensus 44 ~~Sk~~PfCDGsH~ 57 (77)
T 4ezf_A 44 WRSKKFPFCDGAHT 57 (77)
T ss_dssp SCCTTTTBCCSHHH
T ss_pred CCCCCCCccCCchh
Confidence 68999999999764
No 9
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.93 E-value=21 Score=27.70 Aligned_cols=27 Identities=15% Similarity=-0.077 Sum_probs=0.0
Q ss_pred hhhhhhhhhhh-chhhHHHHHHHHHHHh
Q psy17595 76 RNRLWRNLTYF-GALPCCALVGVYVYLE 102 (153)
Q Consensus 76 rtK~WkkiS~f-VaiP~v~l~~~n~y~~ 102 (153)
.+|+=|++.+. +|||+++|++..+|-.
T Consensus 24 ~Mk~~kk~~la~~al~~l~l~s~~A~A~ 51 (175)
T 3lay_A 24 AMKRNNKSAIALIALSLLALSSGAAFAG 51 (175)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 67777777666 4689788777666543
No 10
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=17.36 E-value=28 Score=24.28 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=14.3
Q ss_pred CCccc-cccCCCCCCCCCCC
Q psy17595 118 REYLY-IRNRRFPWGDGNHT 136 (153)
Q Consensus 118 Y~yl~-iR~K~FPWGdG~~t 136 (153)
+.|=| =|+|.||+=||.|.
T Consensus 46 ~~~CrC~~Sk~~P~CDGSH~ 65 (83)
T 3s2r_A 46 TPYCRCWRSGTFPLCDGSCV 65 (83)
T ss_dssp EEECSSSCCTTTTBCCSHHH
T ss_pred eEEEecCCCCCCCccCchhH
Confidence 44444 68999999999763
Done!