RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17595
         (153 letters)



>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex
           IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK
           PGV DMU; 1.95A {Bos taurus}
          Length = 97

 Score =  114 bits (287), Expect = 3e-34
 Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R WR LT+  ALP  AL  +  +L       H  RP F+   +L IR + F WGDGNHT 
Sbjct: 26  RTWRFLTFGLALPSVALCTLNSWLHS----GHRERPAFIPYHHLRIRTKPFSWGDGNHTF 81

Query: 138 FHNKHVNALPEGYEE 152
           FHN  VN LP GYE+
Sbjct: 82  FHNPRVNPLPTGYEK 96


>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET:
           FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos
           taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G*
           2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G*
           3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G*
           3aso_G* 2occ_G* 1oco_G* ...
          Length = 85

 Score =  113 bits (285), Expect = 4e-34
 Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R WR LT+  ALP  AL  +  +L       H  RP F+   +L IR + F WGDGNHT 
Sbjct: 14  RTWRFLTFGLALPSVALCTLNSWLHS----GHRERPAFIPYHHLRIRTKPFSWGDGNHTF 69

Query: 138 FHNKHVNALPEGYEE 152
           FHN  VN LP GYE+
Sbjct: 70  FHNPRVNPLPTGYEK 84


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 1.5
 Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 31/83 (37%)

Query: 65  PEFVKREYLYIRNRLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHV-RPEFVK--REYL 121
           P  + R Y+  R+RL+ +   F                     +++V R +     R+ L
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVF--------------------AKYNVSRLQPYLKLRQAL 144

Query: 122 YIRNRRFPW-------GDGNHTL 137
               R           G G   +
Sbjct: 145 L-ELRPAKNVLIDGVLGSGKTWV 166


>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
           ssgcid, seattle structural genomics center for in
           disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
           PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
           1euv_B 3v60_A 3v61_A 3v62_A*
          Length = 209

 Score = 27.1 bits (60), Expect = 2.5
 Identities = 9/46 (19%), Positives = 12/46 (26%)

Query: 107 EEHHVRPEFVKREYLYIRNRRFPWGDGNHTLFHNKHVNALPEGYEE 152
             HH     VK E     +      DG+  +F             E
Sbjct: 3   HHHHHHSGEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLME 48


>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
           binding, DNA repair, mismatch recognition; HET: DNA ADP;
           2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
           c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
           1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
          Length = 800

 Score = 26.3 bits (59), Expect = 4.7
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 97  VYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFP 129
           V V L  +A   ++  P F+ +  + I   R P
Sbjct: 554 VLVNLAERAYTLNYTCPTFIDKPGIRITEGRHP 586


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.139    0.454 

Gapped
Lambda     K      H
   0.267   0.0481    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,590,871
Number of extensions: 148442
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 14
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.8 bits)