RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17595
         (153 letters)



>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit
           VIa {Cow (Bos taurus) [TaxId: 9913]}
          Length = 84

 Score =  114 bits (287), Expect = 8e-35
 Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 78  RLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHTL 137
           R WR LT+  ALP  AL  +  +L       H  RP F+   +L IR + F WGDGNHT 
Sbjct: 14  RTWRFLTFGLALPSVALCTLNSWLHS----GHRERPAFIPYHHLRIRTKPFSWGDGNHTF 69

Query: 138 FHNKHVNALPEGYEE 152
           FHN  VN LP GYE+
Sbjct: 70  FHNPRVNPLPTGYEK 84


>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId:
           9103]}
          Length = 102

 Score = 25.2 bits (54), Expect = 2.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 105 AEEEHHVRPEFVKR 118
           AEE+ HV+P F K 
Sbjct: 1   AEEKPHVKPYFTKT 14



 Score = 23.7 bits (50), Expect = 7.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 57 AEEAHHVRPEFVKR 70
          AEE  HV+P F K 
Sbjct: 1  AEEKPHVKPYFTKT 14


>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
           subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 288

 Score = 25.0 bits (54), Expect = 4.4
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 55  HQAEEAHHVRPEFVKREYLYIRNRLWRNLT-YFGALPCCALVGVYVYLEH 103
           H++ +   V   + +    Y    +W+  T  F  LP  ALV   ++  H
Sbjct: 113 HESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLH 162


>d2i9wa1 d.17.4.30 (A:46-158) Hypothetical protein Psyc2064
           {Psychrobacter arcticus [TaxId: 334543]}
          Length = 113

 Score = 24.1 bits (52), Expect = 6.1
 Identities = 7/30 (23%), Positives = 11/30 (36%)

Query: 52  YLEHQAEEAHHVRPEFVKREYLYIRNRLWR 81
           +      +AHH    FVK +     +  W 
Sbjct: 77  FKTPDGLQAHHELSTFVKIKNKANSDASWY 106


>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 243

 Score = 24.3 bits (52), Expect = 7.0
 Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 2/117 (1%)

Query: 10  MRKFSTSPAMKSSAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEAHHVRPEFVK 69
           M   +   A+K  AG  +  + +  + Y G  P    V V    +++      VR  F K
Sbjct: 57  MPWENIERAIKKGAGELEGEQ-FEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTK 115

Query: 70  REYLYIR-NRLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRN 125
                     +       G +   A       L  +A E      +  +  ++    
Sbjct: 116 HGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHIIYTV 172


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.454 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 633,122
Number of extensions: 29050
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 12
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.0 bits)