BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17596
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9TTT7|CX6A1_RABIT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus
cuniculus GN=COX6A1 PE=3 SV=1
Length = 109
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Query: 3 SRLGQMMMR-KFSTSPAMKSAA-GNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEE 60
SR+ Q++ R + M S A G + ++W+ LTYF ALP + + VYL+ EE
Sbjct: 7 SRVSQLLGRSRLQVGRPMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVYLKSHHEE- 65
Query: 61 HHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEE 104
H RPEF+ +L IR++ FPWGDGNH+LFHN HVN LP GYE+
Sbjct: 66 -HERPEFIAYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYED 108
>sp|P10818|CX6A1_RAT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus
norvegicus GN=Cox6a1 PE=1 SV=2
Length = 111
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Query: 2 ASRLGQMMMRKFS--TSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEE 59
ASR+ ++ R P A G + ++W+ LTYF ALP + + V+L+ + EE
Sbjct: 8 ASRVSGLLGRALPRVGRPMSSGAHGEEGSARIWKALTYFVALPGVGVSMLNVFLKSRHEE 67
Query: 60 EHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
H RPEFV +L IR + FPWGDGNH+LFHN H+N LP GYE++
Sbjct: 68 --HERPEFVAYPHLRIRTKPFPWGDGNHTLFHNPHMNPLPTGYEDE 111
>sp|P12074|CX6A1_HUMAN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Homo sapiens
GN=COX6A1 PE=1 SV=4
Length = 109
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 17 PAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIR 76
P A G + ++W+ LT+F ALP A+ + VYL+ E H RPEF+ +L IR
Sbjct: 23 PMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLKSHHGE--HERPEFIAYPHLRIR 80
Query: 77 NRRFPWGDGNHSLFHNKHVNALPEGYEED 105
+ FPWGDGNH+LFHN HVN LP GYE++
Sbjct: 81 TKPFPWGDGNHTLFHNPHVNPLPTGYEDE 109
>sp|P43024|CX6A1_MOUSE Cytochrome c oxidase subunit 6A1, mitochondrial OS=Mus musculus
GN=Cox6a1 PE=1 SV=2
Length = 111
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 2 ASRLGQMMMRKFST--SPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEE 59
ASR+ + + R P A G + ++W+ LTYF ALP + + V+L+ + EE
Sbjct: 8 ASRVSRPLGRALPGLRRPMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSRHEE 67
Query: 60 EHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
H RP FV +L IR + FPWGDGNH+LFHN HVN LP GYE++
Sbjct: 68 --HERPPFVAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE 111
>sp|P13182|CX6A1_BOVIN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Bos taurus
GN=COX6A1 PE=1 SV=3
Length = 109
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 5 LGQMMMRKFSTSPAMKSAA-GNPDAVKLWRNLTYFGALPCCALVGVYVYLE-HQAEEEHH 62
G + + S M S A G + ++W+ LTYF ALP + + V+L+ H EEE
Sbjct: 10 FGLLGRSRLQLSRCMSSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSHHGEEE-- 67
Query: 63 VRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105
RPEFV +L IR++ FPWGDGNH+LFHN HVN LP GYE++
Sbjct: 68 -RPEFVAYPHLRIRSKPFPWGDGNHTLFHNPHVNPLPTGYEDE 109
>sp|O13085|COX6A_ONCMY Cytochrome c oxidase subunit 6A, mitochondrial OS=Oncorhynchus
mykiss PE=3 SV=1
Length = 102
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 28 AVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNH 87
+ + W+ L++ ALP A+ Y++ Q + H PEFV +L IR +++PWGDGNH
Sbjct: 25 SARTWKILSFVLALPGVAVCIANAYMKMQ--QHSHEPPEFVAYSHLRIRTKKWPWGDGNH 82
Query: 88 SLFHNKHVNALPEGYE 103
SLFHN H NALPEGYE
Sbjct: 83 SLFHNPHENALPEGYE 98
>sp|P10817|CX6A2_RAT Cytochrome c oxidase subunit 6A2, mitochondrial (Fragment)
OS=Rattus norvegicus GN=Cox6a2 PE=1 SV=3
Length = 94
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 14 STSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYL 73
S + A K G A WR LT+ ALP AL + ++ HH RPEF+ +L
Sbjct: 8 SMASASKGDHGGAGA-NTWRLLTFVLALPSVALCSLNCWMH----AGHHERPEFIPYHHL 62
Query: 74 YIRNRRFPWGDGNHSLFHNKHVNALPEGYEE 104
IR + F WGDGNH+LFHN HVN LP GYE+
Sbjct: 63 RIRTKPFSWGDGNHTLFHNPHVNPLPTGYEQ 93
>sp|P43023|CX6A2_MOUSE Cytochrome c oxidase subunit 6A2, mitochondrial OS=Mus musculus
GN=Cox6a2 PE=1 SV=2
Length = 97
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 14 STSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYL 73
S + A K G A WR LT+ ALP AL + ++ HH RPEF+ +L
Sbjct: 11 SMASAAKGDHGGAGA-NTWRLLTFVLALPGVALCSLNCWMH----AGHHERPEFIPYHHL 65
Query: 74 YIRNRRFPWGDGNHSLFHNKHVNALPEGYEE 104
IR + F WGDGNH+LFHN HVN LP GYE
Sbjct: 66 RIRTKPFAWGDGNHTLFHNPHVNPLPTGYEH 96
>sp|O13082|COX6A_CYPCA Cytochrome c oxidase subunit 6A, mitochondrial OS=Cyprinus carpio
PE=3 SV=1
Length = 102
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 18 AMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRN 77
A S + + W+ L++ ALP + Y++ QA H PEFV +L IR
Sbjct: 15 AAASQGSHEGGARTWKILSFVLALPGVGVCMANAYMKMQAHS--HDPPEFVPYPHLRIRT 72
Query: 78 RRFPWGDGNHSLFHNKHVNALPEGYE 103
+ +PWGDGNHSLFHN H NALP GYE
Sbjct: 73 KPWPWGDGNHSLFHNAHTNALPTGYE 98
>sp|Q02221|CX6A2_HUMAN Cytochrome c oxidase subunit 6A2, mitochondrial OS=Homo sapiens
GN=COX6A2 PE=2 SV=2
Length = 97
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 30 KLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSL 89
+ WR LT+ ALP AL YL H RPEF ++L IR + +PWGDGNH+L
Sbjct: 26 RTWRLLTFVLALPSVALCTFNSYLH----SGHRPRPEFRPYQHLRIRTKPYPWGDGNHTL 81
Query: 90 FHNKHVNALPEGYEE 104
FHN HVN LP GYE
Sbjct: 82 FHNSHVNPLPTGYEH 96
>sp|Q5RC38|CX6A2_PONAB Cytochrome c oxidase subunit 6A2, mitochondrial OS=Pongo abelii
GN=COX6A2 PE=3 SV=1
Length = 97
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 30 KLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSL 89
+ WR LT+ ALP AL YL H RPEF ++L IR + +PWGDGNH+L
Sbjct: 26 RTWRLLTFVLALPSVALCTFNSYLH----SGHRPRPEFRPYQHLRIRTKPYPWGDGNHTL 81
Query: 90 FHNKHVNALPEGYEE 104
FHN HVN LP GYE
Sbjct: 82 FHNTHVNPLPTGYEH 96
>sp|Q20779|COX6A_CAEEL Probable cytochrome c oxidase subunit 6A, mitochondrial
OS=Caenorhabditis elegans GN=tag-174 PE=3 SV=1
Length = 128
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 27 DAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGN 86
+A + W+ + + ++PC AL + +H+ H RPE V+ +L +RN+ FPW DGN
Sbjct: 46 NASETWKKIFFIASIPCLALTMYAAFKDHKKHMSHE-RPEHVEYAFLNVRNKPFPWSDGN 104
Query: 87 HSLFHNKHVNALPE-GYEED 105
HSLFHNK +P G+E D
Sbjct: 105 HSLFHNKAEQFVPGVGFEAD 124
>sp|P07471|CX6A2_BOVIN Cytochrome c oxidase subunit 6A2, mitochondrial OS=Bos taurus
GN=COX6A2 PE=1 SV=2
Length = 97
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 28 AVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNH 87
+ WR LT+ ALP AL + +L H RP F+ +L IR + F WGDGNH
Sbjct: 24 GARTWRFLTFGLALPSVALCTLNSWLH----SGHRERPAFIPYHHLRIRTKPFSWGDGNH 79
Query: 88 SLFHNKHVNALPEGYEE 104
+ FHN VN LP GYE+
Sbjct: 80 TFFHNPRVNPLPTGYEK 96
>sp|P32799|COX13_YEAST Cytochrome c oxidase subunit 6A, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX13 PE=1
SV=1
Length = 129
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 6 GQMMMRKFSTSPAMKSAAGNPDAVKLWRNLTYFGALPCCALVGVYVYL---EHQAEEEH- 61
++ +KF S M + D +W ++ + ALP AL V Y EH EH
Sbjct: 26 DKVAAQKFKES-LMATEKHAKDTSNMWVKISVWVALPAIALTAVNTYFVEKEHAEHREHL 84
Query: 62 -HVRPEFVKREYLY--IRNRRFPWGDGNHSLFHNKHVN 96
HV R+Y + IR++ F WGDG+ +LF N VN
Sbjct: 85 KHVPDSEWPRDYEFMNIRSKPFFWGDGDKTLFWNPVVN 122
>sp|O74471|COX13_SCHPO Cytochrome c oxidase subunit 6A, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox13 PE=3 SV=1
Length = 130
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 28 AVKLWRNLTYFGALPCCALVGV---YVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGD 84
+ + W+ +TY+ P L Y+Y +HQ E HV + +R +++PWGD
Sbjct: 53 SSEFWKKVTYYIGGPALILASANAYYIYCKHQ-EHAKHVEDTDPGYSFENLRFKKYPWGD 111
Query: 85 GNHSLFHNKHVNALPEGYE 103
G+ +LF N VN L + E
Sbjct: 112 GSKTLFWNDKVNHLKKDDE 130
>sp|Q9T070|COX6A_ARATH Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis
thaliana GN=COX6A PE=2 SV=1
Length = 102
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 3 SRLGQMMMRKFSTSPA--MKSAAGNPDAVKL--WRNLTYFGALPCCALVGVYVYLEHQAE 58
SR K S +P S+AG+ DA + W +TY G C AL VYV
Sbjct: 11 SRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTAL-AVYVL-----S 64
Query: 59 EEHHVRPEFVKREYLYIRNRRFPWG-DGNHSLFHNK 93
+ HH + +++IRN+ FPWG DG + HNK
Sbjct: 65 KGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHNK 100
>sp|B9DW73|MUTS_STRU0 DNA mismatch repair protein MutS OS=Streptococcus uberis (strain
ATCC BAA-854 / 0140J) GN=mutS PE=3 SV=1
Length = 847
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 45 ALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRR 79
A V V L + AE+ H+VRPEF ++ + I+N R
Sbjct: 537 ATVDVLQGLAYVAEKNHYVRPEFASQKVITIQNGR 571
>sp|Q1G938|MUTS_LACDA DNA mismatch repair protein MutS OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC 11842 / DSM 20081)
GN=mutS PE=3 SV=1
Length = 856
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 26 PDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFP 81
PD +L R L A + V+V AEE+++ RP F + + ++N R P
Sbjct: 532 PDLQELGRQL---------AALDVFVAFAQDAEEKNYCRPSFSSKNEIAVKNGRHP 578
>sp|Q048Y4|MUTS_LACDB DNA mismatch repair protein MutS OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC BAA-365) GN=mutS PE=3
SV=1
Length = 856
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 26 PDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFP 81
PD +L R L A + V+V AEE+++ RP F + + ++N R P
Sbjct: 532 PDLQELGRQL---------AALDVFVAFAQDAEEKNYCRPSFSSKNEIAVKNGRHP 578
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,548,333
Number of Sequences: 539616
Number of extensions: 1552605
Number of successful extensions: 2925
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2894
Number of HSP's gapped (non-prelim): 19
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)