Query psy17596
Match_columns 105
No_of_seqs 102 out of 243
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 18:06:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00925 Cyt_c_Oxidase_VIa Cyto 100.0 1.9E-46 4E-51 255.5 7.3 78 25-103 9-86 (86)
2 PF02046 COX6A: Cytochrome c o 100.0 1.6E-42 3.5E-47 246.6 5.2 93 6-98 10-115 (116)
3 KOG3469|consensus 100.0 8.2E-42 1.8E-46 242.1 3.7 104 1-105 3-112 (112)
4 PLN02595 cytochrome c oxidase 100.0 6E-29 1.3E-33 174.0 7.2 88 1-94 1-101 (102)
5 PF13124 DUF3963: Protein of u 52.6 20 0.00044 21.3 2.7 23 28-50 15-38 (40)
6 PF12622 NpwBP: mRNA biogenesi 45.6 12 0.00026 22.9 1.1 14 85-98 1-14 (48)
7 PHA03066 Hypothetical protein; 35.3 20 0.00043 25.7 1.0 25 69-94 38-62 (110)
8 PF02939 UcrQ: UcrQ family; I 34.4 1.4E+02 0.0031 19.9 5.0 33 25-57 31-66 (80)
9 PF15018 InaF-motif: TRP-inter 24.3 61 0.0013 19.1 1.6 17 37-53 15-31 (38)
10 smart00704 ZnF_CDGSH CDGSH-typ 23.6 51 0.0011 19.0 1.2 14 75-88 20-33 (38)
11 PF05961 Chordopox_A13L: Chord 22.3 1.6E+02 0.0034 19.5 3.4 40 37-78 8-47 (68)
12 PF02180 BH4: Bcl-2 homology r 21.5 38 0.00083 18.6 0.4 11 74-84 16-26 (27)
13 cd01850 CDC_Septin CDC/Septin. 21.4 35 0.00076 26.8 0.3 11 74-84 219-229 (276)
14 PF11119 DUF2633: Protein of u 20.5 1.6E+02 0.0034 19.0 3.1 24 35-58 16-39 (59)
No 1
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=100.00 E-value=1.9e-46 Score=255.54 Aligned_cols=78 Identities=54% Similarity=1.035 Sum_probs=74.0
Q ss_pred CchhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCcccccccCCCCCCCCCCCCccCCCcCCCCCCCc
Q psy17596 25 NPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYE 103 (105)
Q Consensus 25 ~~~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~~Y~yl~iR~K~FPWGDG~~tLFhNp~~N~lp~gyE 103 (105)
+++++++||+||++||+|||+||++|+|+++++|++ +++|||++|+|||||+|+||||||||||||||+||+||+|||
T Consensus 9 ~~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~eh~~-~~~pe~~~Y~yl~IR~K~FpWGDG~~tlFhN~~vN~lp~gye 86 (86)
T cd00925 9 AAGTSELWKKISFYVALPAVALCMLNAYLKHKEHEE-HERPEFVEYEHLNIRTKPFPWGDGNKTLFHNPHVNALPTGYE 86 (86)
T ss_pred ccchhhhhhhhhhhhHHHHHHHHHHHHHhhhhcccc-cCCCCCCCCccceeecCCCCCCCCCcccccCCCcCCCCCCCC
Confidence 347799999999999999999999999999998765 679999999999999999999999999999999999999998
No 2
>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....
Probab=100.00 E-value=1.6e-42 Score=246.59 Aligned_cols=93 Identities=49% Similarity=0.853 Sum_probs=50.1
Q ss_pred HHHHHHhhccccchhc-------cc-C-CchhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhc--c--CCCCCCCCcc
Q psy17596 6 GQMMMRKFSTSPAMKS-------AA-G-NPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEH--H--VRPEFVKREY 72 (105)
Q Consensus 6 ~~~~~~~~~~~~~r~~-------~~-~-~~~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~H--h--~~PE~~~Y~y 72 (105)
++..+|++++++++.. ++ + +++++++||+||++||||+|+|+++|+|.++.+|++| | ++|||++|||
T Consensus 10 ~~~~~R~~s~~~~~~~~f~~~~~a~~~ha~~~~~~Wk~iS~~v~iP~i~l~~~n~~~l~~~H~eH~~h~~~~pe~~~Y~y 89 (116)
T PF02046_consen 10 RRAARRFFSTSAARASAFLAERSASEEHAEETAKLWKKISFFVAIPAIALCMLNAYYLEKEHHEHREHLPERPEFVPYPY 89 (116)
T ss_dssp ----------------------TSSSSTSSSSHHHHHHHHHHTHHHHHHHHHHHHH-HSTS-----------------TT
T ss_pred cccccccccccccccccccchhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCcc
Confidence 4455666666544321 11 2 4588999999999999999999999999888887764 2 6899999999
Q ss_pred cccccCCCCCCCCCCCCccCCCcCCC
Q psy17596 73 LYIRNRRFPWGDGNHSLFHNKHVNAL 98 (105)
Q Consensus 73 l~iR~K~FPWGDG~~tLFhNp~~N~l 98 (105)
||||+|+||||||||||||||+||+|
T Consensus 90 l~iR~K~FPWGDG~~tLFhNp~~N~l 115 (116)
T PF02046_consen 90 LRIRTKPFPWGDGNHTLFHNPHVNAL 115 (116)
T ss_dssp SS--SS--SSTTSSS-TT--TTT-EB
T ss_pred ceecCCCCCCCCCCcCCccCCCcCCC
Confidence 99999999999999999999999987
No 3
>KOG3469|consensus
Probab=100.00 E-value=8.2e-42 Score=242.14 Aligned_cols=104 Identities=45% Similarity=0.818 Sum_probs=92.6
Q ss_pred ChhhHHHHHHHhhccccchhc----ccC--CchhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCcccc
Q psy17596 1 MASRLGQMMMRKFSTSPAMKS----AAG--NPDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLY 74 (105)
Q Consensus 1 m~~~~~~~~~~~~~~~~~r~~----~~~--~~~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~~Y~yl~ 74 (105)
|++.+.++..++++.++.|.+ ++. .++.+++|++||+|+++||++||++|+|+.+++|.+ |++||++.|+|||
T Consensus 3 l~~~~~rSv~r~~~~ks~~~~~~~~~~~~~~e~~s~~Wkkit~~~alP~~al~~~n~y~~~~~~~e-~~~~e~~~Y~fl~ 81 (112)
T KOG3469|consen 3 LAVPLTRSVTRRLGLKSARHMYRRAAVAGFKEGGSRTWKKITFFVALPAVALAMYNAYLGHGHHPE-HERPEFRAYEFLN 81 (112)
T ss_pred cchhhcccccccccccccccccchhhhhhhcchhhhhhhheeeeeeccHHHHHHHHHHHhhccCcc-cCCccccccchhh
Confidence 455667889999988777765 222 345579999999999999999999999999999877 8899999999999
Q ss_pred cccCCCCCCCCCCCCccCCCcCCCCCCCcCC
Q psy17596 75 IRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105 (105)
Q Consensus 75 iR~K~FPWGDG~~tLFhNp~~N~lp~gyE~e 105 (105)
||+|+|||||||+||||||+||+||+|||+|
T Consensus 82 iR~K~fpWgdG~~tLfhN~~vn~l~~~~E~d 112 (112)
T KOG3469|consen 82 IRNKPFPWGDGNKTLFHNPHVNPLPTGYEHD 112 (112)
T ss_pred hhcCCCCCCCCcchhccCcccccCcccccCC
Confidence 9999999999999999999999999999986
No 4
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=99.95 E-value=6e-29 Score=174.00 Aligned_cols=88 Identities=31% Similarity=0.609 Sum_probs=61.6
Q ss_pred ChhhHHHHHHHhhcc--------ccchhccc--CCc--hhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCC
Q psy17596 1 MASRLGQMMMRKFST--------SPAMKSAA--GNP--DAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFV 68 (105)
Q Consensus 1 m~~~~~~~~~~~~~~--------~~~r~~~~--~~~--~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~ 68 (105)
||..+.|+.++++.. ...|+.++ +|+ +++++||+|||++++||++ +|+|+++++|++ +++| +
T Consensus 1 ma~~~~~~~l~~~~~~~~~~~~~~~~r~~~a~~~h~~a~~a~~WkklS~~~v~~c~~---lnaY~l~~eH~~-~e~p--~ 74 (102)
T PLN02595 1 MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTA---LAVYVLSKGHHH-GEDP--P 74 (102)
T ss_pred ChHHHHHHHHHHHHHhhccCcccccccccccccCCCcchhhhhhhhhhHHHhHHHHH---HHHHHhhhcccc-CCCC--C
Confidence 666666665555431 12233322 233 5899999999997554432 378888877644 3444 5
Q ss_pred CCcccccccCCCCCC-CCCCCCccCCC
Q psy17596 69 KREYLYIRNRRFPWG-DGNHSLFHNKH 94 (105)
Q Consensus 69 ~Y~yl~iR~K~FPWG-DG~~tLFhNp~ 94 (105)
+|+|||||+|+|||| ||++++|||.+
T Consensus 75 ~Y~yLrIRtK~FPWG~DG~~e~~hn~~ 101 (102)
T PLN02595 75 AYPYMHIRNKEFPWGPDGLFEVKHNKE 101 (102)
T ss_pred CCCcceeecCCCCCCCCcccccccccC
Confidence 999999999999999 99999999975
No 5
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=52.55 E-value=20 Score=21.29 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=17.2
Q ss_pred hHHhH-HHHHHHhHHHHHHHHHHH
Q psy17596 28 AVKLW-RNLTYFGALPCCALVGVY 50 (105)
Q Consensus 28 ~~~~W-k~iS~~v~~P~i~l~~~n 50 (105)
...+| |+||++.|+-.|+|.+++
T Consensus 15 diqkwirnit~cfal~vv~lvslw 38 (40)
T PF13124_consen 15 DIQKWIRNITFCFALLVVVLVSLW 38 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566 789999988777777665
No 6
>PF12622 NpwBP: mRNA biogenesis factor
Probab=45.62 E-value=12 Score=22.90 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=12.4
Q ss_pred CCCCCccCCCcCCC
Q psy17596 85 GNHSLFHNKHVNAL 98 (105)
Q Consensus 85 G~~tLFhNp~~N~l 98 (105)
|.+|.|.||..|++
T Consensus 1 ~~kSiyydP~~NP~ 14 (48)
T PF12622_consen 1 PEKSIYYDPELNPL 14 (48)
T ss_pred CCcceecCCccCCC
Confidence 56899999999986
No 7
>PHA03066 Hypothetical protein; Provisional
Probab=35.28 E-value=20 Score=25.73 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=19.8
Q ss_pred CCcccccccCCCCCCCCCCCCccCCC
Q psy17596 69 KREYLYIRNRRFPWGDGNHSLFHNKH 94 (105)
Q Consensus 69 ~Y~yl~iR~K~FPWGDG~~tLFhNp~ 94 (105)
++...+.|.-.|||- .+-+||.+|.
T Consensus 38 e~~~ik~~d~~~P~~-~~t~lF~~~~ 62 (110)
T PHA03066 38 ENAIIKQRNDEFPTT-LNTIIFTDPE 62 (110)
T ss_pred HHHHHHhhhccCCcc-cceEEecCCC
Confidence 344577788899995 5889999987
No 8
>PF02939 UcrQ: UcrQ family; InterPro: IPR004205 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multi-enzyme complex [], which recognises a mitochondrial targeting presequence. The bc1 complex contains 11 subunits: 3 respiratory subunits (cytochrome b, cytochrome c1 and Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 9.5 kDa subunit of the complex. This subunit together with cytochrome B binds to ubiquinone.; GO: 0008121 ubiquinol-cytochrome-c reductase activity; PDB: 1L0N_G 1SQQ_G 1PP9_G 1PPJ_T 2FYU_G 2BCC_G 1BCC_G 2A06_G 1NTZ_G 2YBB_g ....
Probab=34.36 E-value=1.4e+02 Score=19.88 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=22.1
Q ss_pred CchhHHhHHHHH---HHhHHHHHHHHHHHHHHhhhh
Q psy17596 25 NPDAVKLWRNLT---YFGALPCCALVGVYVYLEHQA 57 (105)
Q Consensus 25 ~~~~~~~Wk~iS---~~v~~P~i~l~~~n~y~~~~~ 57 (105)
+.+--+.||++. ++|++|+|+.-.+..+-.+..
T Consensus 31 ~~~i~N~~RR~~~q~~~v~ppfi~~y~i~~Wa~~~~ 66 (80)
T PF02939_consen 31 SKGIFNTFRRFRSQVLYVAPPFIVGYLIYDWANEEN 66 (80)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHH
Confidence 445566777664 677889888877766655443
No 9
>PF15018 InaF-motif: TRP-interacting helix
Probab=24.34 E-value=61 Score=19.10 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=12.1
Q ss_pred HHhHHHHHHHHHHHHHH
Q psy17596 37 YFGALPCCALVGVYVYL 53 (105)
Q Consensus 37 ~~v~~P~i~l~~~n~y~ 53 (105)
++|+++++.|+.++.+.
T Consensus 15 ~~VSl~Ai~LsiYY~f~ 31 (38)
T PF15018_consen 15 FSVSLAAIVLSIYYIFF 31 (38)
T ss_pred HHHHHHHHHHHHHHhee
Confidence 45678888888777653
No 10
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=23.56 E-value=51 Score=19.04 Aligned_cols=14 Identities=43% Similarity=0.930 Sum_probs=12.0
Q ss_pred cccCCCCCCCCCCC
Q psy17596 75 IRNRRFPWGDGNHS 88 (105)
Q Consensus 75 iR~K~FPWGDG~~t 88 (105)
-++|.+|+=||.|.
T Consensus 20 ~~S~~~PfCDGsH~ 33 (38)
T smart00704 20 GRSKNFPYCDGSHK 33 (38)
T ss_pred CCCCCCCccCCccc
Confidence 58899999999874
No 11
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=22.26 E-value=1.6e+02 Score=19.54 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=18.4
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCcccccccC
Q psy17596 37 YFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNR 78 (105)
Q Consensus 37 ~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~~Y~yl~iR~K 78 (105)
+.+|+.+|++..+-+|..-..- . +..|.-..||.+.-++.
T Consensus 8 i~ICVaii~lIlY~iYnr~~~~-q-~~~~~~e~y~~~~~~kT 47 (68)
T PF05961_consen 8 IIICVAIIGLILYGIYNRKKTT-Q-NTNPSTENYEKMENLKT 47 (68)
T ss_pred HHHHHHHHHHHHHHHHhccccc-C-CCCCchhhcCCccccch
Confidence 3445545555555555544332 1 22221156777665443
No 12
>PF02180 BH4: Bcl-2 homology region 4; InterPro: IPR003093 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 1AF3_A 2PON_B 1YSN_A 3PL7_B 3R85_A 2O2N_A 2P1L_C 1R2G_A 2O1Y_A 1BXL_A ....
Probab=21.50 E-value=38 Score=18.63 Aligned_cols=11 Identities=18% Similarity=0.737 Sum_probs=8.6
Q ss_pred ccccCCCCCCC
Q psy17596 74 YIRNRRFPWGD 84 (105)
Q Consensus 74 ~iR~K~FPWGD 84 (105)
+++.|-|+|++
T Consensus 16 KLsQrgy~w~~ 26 (27)
T PF02180_consen 16 KLSQRGYVWEE 26 (27)
T ss_dssp HHHHTTSTSTT
T ss_pred HhhhcCCCCCC
Confidence 57788888876
No 13
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=21.42 E-value=35 Score=26.77 Aligned_cols=11 Identities=45% Similarity=1.334 Sum_probs=9.2
Q ss_pred ccccCCCCCCC
Q psy17596 74 YIRNRRFPWGD 84 (105)
Q Consensus 74 ~iR~K~FPWGD 84 (105)
.+|.+.||||-
T Consensus 219 ~~~~R~y~WG~ 229 (276)
T cd01850 219 KVRGRKYPWGV 229 (276)
T ss_pred EEEEecCCccE
Confidence 47889999994
No 14
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=20.53 E-value=1.6e+02 Score=18.96 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhh
Q psy17596 35 LTYFGALPCCALVGVYVYLEHQAE 58 (105)
Q Consensus 35 iS~~v~~P~i~l~~~n~y~~~~~h 58 (105)
|||.+.+.-++..+++++..|++-
T Consensus 16 ISfiIlfgRl~Y~~I~a~~hHq~k 39 (59)
T PF11119_consen 16 ISFIILFGRLIYSAIGAWVHHQDK 39 (59)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 556555555677777777665553
Done!