Query psy17596
Match_columns 105
No_of_seqs 102 out of 243
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 18:07:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y69_G Cytochrome C oxidase po 100.0 5.6E-48 1.9E-52 266.9 7.2 76 26-105 22-97 (97)
2 1v54_G Cytochrome C oxidase po 100.0 4.9E-47 1.7E-51 256.9 7.1 76 26-105 10-85 (85)
3 2a2m_A Hypothetical protein BT 57.1 2.9 0.0001 31.4 0.7 29 62-91 11-39 (258)
4 3tgu_G UQCRQ, mitochondrial ub 36.7 70 0.0024 20.5 4.8 33 25-57 31-66 (81)
5 1pp9_G Ubiquinol-cytochrome C 36.0 51 0.0018 21.1 4.0 33 25-57 31-66 (81)
6 3cai_A Possible aminotransfera 34.3 10 0.00035 28.1 0.4 25 69-94 10-34 (406)
7 2knc_B Integrin beta-3; transm 32.2 3 0.0001 26.8 -2.4 29 65-96 42-70 (79)
8 1ub1_A MECP2, attachment regio 30.4 24 0.00081 25.0 1.8 13 69-81 22-34 (133)
9 2y69_J Cytochrome C oxidase po 26.4 1.2E+02 0.004 19.5 4.5 17 5-21 6-22 (80)
10 4ezf_A Mitoneet, CDGSH iron-su 23.5 17 0.00059 23.6 0.0 15 75-89 44-58 (77)
11 3l7h_A RE64145P, roadblock; LC 22.4 20 0.00069 23.6 0.2 12 69-80 66-77 (97)
12 1z5x_E Ecdysone receptor ligan 22.1 19 0.00064 27.6 0.0 17 58-74 7-23 (310)
13 3cx5_H Cytochrome B-C1 complex 21.4 87 0.003 20.6 3.2 31 25-55 41-74 (93)
14 1ews_A RK-1 defensin, alpha-de 21.1 20 0.00067 19.4 -0.1 14 81-94 11-26 (32)
No 1
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=100.00 E-value=5.6e-48 Score=266.95 Aligned_cols=76 Identities=43% Similarity=0.792 Sum_probs=71.6
Q ss_pred chhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCcccccccCCCCCCCCCCCCccCCCcCCCCCCCcCC
Q psy17596 26 PDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105 (105)
Q Consensus 26 ~~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~~Y~yl~iR~K~FPWGDG~~tLFhNp~~N~lp~gyE~e 105 (105)
++++++||+||++||+|+|+||++|+|+.++| |++|||++|+|||||+|+||||||||||||||++|+||+|||||
T Consensus 22 ~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~e----h~~~E~~~Y~yl~IR~K~FPWGDG~~tLFhNp~~N~lp~GyE~~ 97 (97)
T 2y69_G 22 GTGARTWRFLTFGLALPSVALCTLNSWLHSGH----RERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEKP 97 (97)
T ss_dssp SCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSC----CCCCCCCCCTTSSCCSSCCSSTTSSSCTTCCTTTCCBTTBSCC-
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCCCCCCchhhhccCCCCCCCCCcCcccCCCcCCCCCCCCCC
Confidence 46799999999999999999999999998876 46899999999999999999999999999999999999999997
No 2
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=100.00 E-value=4.9e-47 Score=256.94 Aligned_cols=76 Identities=43% Similarity=0.792 Sum_probs=71.9
Q ss_pred chhHHhHHHHHHHhHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCcccccccCCCCCCCCCCCCccCCCcCCCCCCCcCC
Q psy17596 26 PDAVKLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRNRRFPWGDGNHSLFHNKHVNALPEGYEED 105 (105)
Q Consensus 26 ~~~~~~Wk~iS~~v~~P~i~l~~~n~y~~~~~h~~Hh~~PE~~~Y~yl~iR~K~FPWGDG~~tLFhNp~~N~lp~gyE~e 105 (105)
++++++||+||++||||+|+||++|+|+.++| |++|||++|+|||||+|+||||||||||||||++|+||+|||||
T Consensus 10 ~~~~~~Wkkis~~va~P~v~l~~~n~y~~~~e----~~~pE~~~Y~yl~IR~K~FPWGdGd~tLFhN~~~N~lp~gyE~~ 85 (85)
T 1v54_G 10 GTGARTWRFLTFGLALPSVALCTLNSWLHSGH----RERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEKP 85 (85)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSC----CCCCCCCCCTTSSCCSSCCSSTTSSSCTTCCTTTCCBTTBCCC-
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCCCCCCCchhheecCCCCCCCCCcCcccCCCcCCCCCCCCCC
Confidence 57899999999999999999999999998876 56899999999999999999999999999999999999999997
No 3
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=57.09 E-value=2.9 Score=31.43 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=15.2
Q ss_pred cCCCCCCCCcccccccCCCCCCCCCCCCcc
Q psy17596 62 HVRPEFVKREYLYIRNRRFPWGDGNHSLFH 91 (105)
Q Consensus 62 h~~PE~~~Y~yl~iR~K~FPWGDG~~tLFh 91 (105)
|+-.+|. -..||+|+...|||.|+-.|=|
T Consensus 11 ~~~~~~~-~~~~~~~~~~~~~~~~~gpl~~ 39 (258)
T 2a2m_A 11 HHMNDFK-NQWLRKRTFAIPASRLTGRLTT 39 (258)
T ss_dssp ------------CCCCCCCCGGGCCGGGTT
T ss_pred hhhhhHH-HHHHHHhhcccccccCCCCccC
Confidence 5566665 5789999999999988776544
No 4
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=36.69 E-value=70 Score=20.50 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=22.8
Q ss_pred CchhHHhHHHH---HHHhHHHHHHHHHHHHHHhhhh
Q psy17596 25 NPDAVKLWRNL---TYFGALPCCALVGVYVYLEHQA 57 (105)
Q Consensus 25 ~~~~~~~Wk~i---S~~v~~P~i~l~~~n~y~~~~~ 57 (105)
+.+--+.||++ .++|++|.|+.-.+..+-.+..
T Consensus 31 ~~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 31 SDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 55666777765 4678899988877776655443
No 5
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=36.00 E-value=51 Score=21.10 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=22.3
Q ss_pred CchhHHhHHHH---HHHhHHHHHHHHHHHHHHhhhh
Q psy17596 25 NPDAVKLWRNL---TYFGALPCCALVGVYVYLEHQA 57 (105)
Q Consensus 25 ~~~~~~~Wk~i---S~~v~~P~i~l~~~n~y~~~~~ 57 (105)
+.+--+.||++ .+++++|+|+.-.+..+-.+..
T Consensus 31 ~~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 31 SKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 34555777777 4678899988877776654443
No 6
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=34.29 E-value=10 Score=28.06 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=16.4
Q ss_pred CCcccccccCCCCCCCCCCCCccCCC
Q psy17596 69 KREYLYIRNRRFPWGDGNHSLFHNKH 94 (105)
Q Consensus 69 ~Y~yl~iR~K~FPWGDG~~tLFhNp~ 94 (105)
+|+...+| +.||.=+.+...|.+..
T Consensus 10 ~~~~~~~r-~~fp~~~~~~~~ld~~~ 34 (406)
T 3cai_A 10 AYDVARVR-GLHPSLGDGWVHFDAPA 34 (406)
T ss_dssp -CCHHHHH-HTCTTTTSSCEECBGGG
T ss_pred cccHHHHH-HhhhhcCCCeEEEeCCC
Confidence 79999888 77997654345555543
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.21 E-value=3 Score=26.84 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=16.3
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCccCCCcC
Q psy17596 65 PEFVKREYLYIRNRRFPWGDGNHSLFHNKHVN 96 (105)
Q Consensus 65 PE~~~Y~yl~iR~K~FPWGDG~~tLFhNp~~N 96 (105)
-||..|+=-+-+.| |.+++..||.+|.++
T Consensus 42 rE~~kFEkE~~~~~---w~~~~NPlyk~~ttt 70 (79)
T 2knc_B 42 KEFAKFEEERARAK---WDTANNPLYKEATST 70 (79)
T ss_dssp HHHHHHHHHHHHHH---HTTTTCCHHHHCSCC
T ss_pred HHHHHHHHHHHhcc---cccCCCCCccCCccC
Confidence 34444443333444 888888777666543
No 8
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=30.40 E-value=24 Score=24.99 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=7.1
Q ss_pred CCcccccccCCCC
Q psy17596 69 KREYLYIRNRRFP 81 (105)
Q Consensus 69 ~Y~yl~iR~K~FP 81 (105)
-+....++.+.++
T Consensus 22 rr~vi~~~~~~~~ 34 (133)
T 1ub1_A 22 RRSIIRDRGPMYD 34 (133)
T ss_dssp CCCCCCTTSCSSC
T ss_pred ccceeeccccccC
Confidence 3455555666554
No 9
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=26.35 E-value=1.2e+02 Score=19.48 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=0.6
Q ss_pred HHHHHHHhhccccchhc
Q psy17596 5 LGQMMMRKFSTSPAMKS 21 (105)
Q Consensus 5 ~~~~~~~~~~~~~~r~~ 21 (105)
+.+...|.|++++.|..
T Consensus 6 l~~~~~r~~st~~~r~~ 22 (80)
T 2y69_J 6 VSQALVRSFSSTARNRF 22 (80)
T ss_dssp ----------------C
T ss_pred HHHHHHHHhcccchhhh
Confidence 45667888898888776
No 10
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=23.53 E-value=17 Score=23.63 Aligned_cols=15 Identities=40% Similarity=0.928 Sum_probs=12.5
Q ss_pred cccCCCCCCCCCCCC
Q psy17596 75 IRNRRFPWGDGNHSL 89 (105)
Q Consensus 75 iR~K~FPWGDG~~tL 89 (105)
-|+|.|||=||.|.-
T Consensus 44 ~~Sk~~PfCDGsH~~ 58 (77)
T 4ezf_A 44 WRSKKFPFCDGAHTK 58 (77)
T ss_dssp SCCTTTTBCCSHHHH
T ss_pred CCCCCCCccCCchhh
Confidence 689999999997653
No 11
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=22.41 E-value=20 Score=23.63 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=10.4
Q ss_pred CCcccccccCCC
Q psy17596 69 KREYLYIRNRRF 80 (105)
Q Consensus 69 ~Y~yl~iR~K~F 80 (105)
+-.+||||+|.+
T Consensus 66 el~fLRiRTkk~ 77 (97)
T 3l7h_A 66 DMTFLRVRSKKH 77 (97)
T ss_dssp CEEEEEEEESSC
T ss_pred CeEEEEEEeCCc
Confidence 578999999975
No 12
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=22.08 E-value=19 Score=27.59 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=0.0
Q ss_pred hhhccCCCCCCCCcccc
Q psy17596 58 EEEHHVRPEFVKREYLY 74 (105)
Q Consensus 58 h~~Hh~~PE~~~Y~yl~ 74 (105)
||+||+|||.+--+++.
T Consensus 7 ~~~~~~~~~c~~~e~qc 23 (310)
T 1z5x_E 7 HHHHHHRPECVVPEFQC 23 (310)
T ss_dssp -----------------
T ss_pred cccccCCCCeeccHHHH
Confidence 33457899998888873
No 13
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=21.43 E-value=87 Score=20.64 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=20.7
Q ss_pred CchhHHhHHHH---HHHhHHHHHHHHHHHHHHhh
Q psy17596 25 NPDAVKLWRNL---TYFGALPCCALVGVYVYLEH 55 (105)
Q Consensus 25 ~~~~~~~Wk~i---S~~v~~P~i~l~~~n~y~~~ 55 (105)
+..--+.||++ .+++++|.|+.-.+...-.+
T Consensus 41 ~~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~ 74 (93)
T 3cx5_H 41 HNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNE 74 (93)
T ss_dssp TTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHhcceEEechHhHHHHHHHHHHH
Confidence 44455666666 57888999888777655443
No 14
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=21.07 E-value=20 Score=19.44 Aligned_cols=14 Identities=50% Similarity=1.104 Sum_probs=10.7
Q ss_pred CCC--CCCCCCccCCC
Q psy17596 81 PWG--DGNHSLFHNKH 94 (105)
Q Consensus 81 PWG--DG~~tLFhNp~ 94 (105)
||. ||.+.||....
T Consensus 11 pwevidgscglfnsky 26 (32)
T 1ews_A 11 PWEVIDGSCGLFNSKY 26 (32)
T ss_dssp TTEEEEECCSSSSCSE
T ss_pred hhheecccccccccee
Confidence 775 88999997653
Done!