RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17596
         (105 letters)



>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit
           VIa {Cow (Bos taurus) [TaxId: 9913]}
          Length = 84

 Score =  115 bits (289), Expect = 6e-36
 Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 21  SAAGNPDAV---KLWRNLTYFGALPCCALVGVYVYLEHQAEEEHHVRPEFVKREYLYIRN 77
           SAA         + WR LT+  ALP  AL  +  +L       H  RP F+   +L IR 
Sbjct: 2   SAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHS----GHRERPAFIPYHHLRIRT 57

Query: 78  RRFPWGDGNHSLFHNKHVNALPEGYEE 104
           + F WGDGNH+ FHN  VN LP GYE+
Sbjct: 58  KPFSWGDGNHTFFHNPRVNPLPTGYEK 84


>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)
          [TaxId: 9103]}
          Length = 102

 Score = 25.6 bits (55), Expect = 0.90
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 57 AEEEHHVRPEFVKR 70
          AEE+ HV+P F K 
Sbjct: 1  AEEKPHVKPYFTKT 14


>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160,
          C-terminal domain {Streptococcus pneumoniae [TaxId:
          1313]}
          Length = 88

 Score = 23.1 bits (50), Expect = 5.1
 Identities = 4/13 (30%), Positives = 6/13 (46%)

Query: 71 EYLYIRNRRFPWG 83
          E+   R  +F  G
Sbjct: 4  EFNVRRGIKFTSG 16


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 425,566
Number of extensions: 18120
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 9
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)