BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17599
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 24 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDK 83
+K+ Y +L + D S+ +++ AYRK ALK HPDKNPD E F +S+A EVL D+
Sbjct: 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSDE 61
Query: 84 SARAAYD 90
R YD
Sbjct: 62 KKRQIYD 68
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 18 SSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKA 76
SS MA+ Y +L + S +DI+ AYRK AL+ HPDKNPD+ E+A + F L+S+A
Sbjct: 5 SSGMAN-----YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEA 59
Query: 77 IEVLLDKSARAAYD 90
EVL D R+ YD
Sbjct: 60 YEVLSDSKKRSLYD 73
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y LL S + I + ++ +AL+CHPDK+P++ KA+ETF L KA E+L ++ +RA
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 88 AYD 90
YD
Sbjct: 81 RYD 83
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 57.0 bits (136), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSA 85
D + Y LL ++ S ++IR A++K ALK HPDKNP++ A F +++A EVL D+
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 86 RAAYD 90
R YD
Sbjct: 80 RKKYD 84
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 29 LYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAA 88
LY +L L + + DI+ +YRK ALK HPDKNPD+ +A + F ++ A +L D + R
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 89 YD 90
YD
Sbjct: 79 YD 80
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L ++ E++IR AY++ A+K HPD+N D++A F + +A EVL D RA
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 88 AYD 90
AYD
Sbjct: 64 AYD 66
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 30 YGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKAIEVLLDKSARAA 88
Y +L++ S DI+ AYR+KAL+ HPDKNPD+ E A + F +++A EVL DK R
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 89 YDSVIR 94
YD R
Sbjct: 65 YDRYGR 70
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L ++ E++IR AY++ A+K HPD+N D++A F + +A EVL D RA
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 88 AYD 90
AYD
Sbjct: 64 AYD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L ++ E++IR AY++ A+K HPD+N D++A F + +A EVL D RA
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 88 AYD 90
AYD
Sbjct: 64 AYD 66
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
+ Y LL ++ S ++IR A++K ALK HPDKNP++ A F +++A EVL D+ R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 88 AYD 90
YD
Sbjct: 63 KYD 65
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 24 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDK 83
+K+ Y +L + + ++++++ AYRK ALK HPDKNP++ E F +S+A EVL D
Sbjct: 3 VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG---EKFKQISQAYEVLSDA 59
Query: 84 SARAAYD 90
R YD
Sbjct: 60 KKRELYD 66
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L + + S+++I+ AY + A K HPD N DD KA E F L++A EVL D+ R
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 88 AYDS 91
YD+
Sbjct: 68 QYDA 71
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 22 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLL 81
A +K+ LY LL ++ +EQ+++ YRK ALK HPDK D E F +S+A E+L
Sbjct: 3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILN 59
Query: 82 DKSARAAYD 90
D R YD
Sbjct: 60 DPQKREIYD 68
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKAIEVLLDKSA 85
+D Y +L++ S + I+ AYRK ALK HPDKNP++ E+A F +++A EVL D
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 86 RAAYD 90
R YD
Sbjct: 69 RDIYD 73
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSA 85
D D Y +L ++ S+ DI+ AY+K A + HPDKN D A + F +SKA E+L ++
Sbjct: 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPGAEDRFIQISKAYEILSNEEK 74
Query: 86 RAAYD 90
R YD
Sbjct: 75 RTNYD 79
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L ++ S++D++ AYR+ ALK HPDKN A E F + A VL + R
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 88 AYD 90
YD
Sbjct: 67 QYD 69
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y L L S+++I+ AYR++AL+ HPDKN + A E F +++A +VL D R
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 88 AYD 90
+D
Sbjct: 63 IFD 65
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 29 LYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAA 88
LY LL + ++ I++AY ++ HPD+N +A E F +S+A VL + R
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 89 YDSVIRRKEEVKIRNSK 105
YD + E+++ S
Sbjct: 79 YDRGLLSDEDLRGPGSG 95
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 30 YGLLELTIDCSEQDIRSAYRKKALKCHPDKN--PDDEKAIETFHLLSKAIEVLLDKSARA 87
Y +L + SE+ I+ A+ K A+K HPDKN PD E F +++A E L D + R
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAE---AKFREIAEAYETLSDANRRK 66
Query: 88 AYDSV 92
YD++
Sbjct: 67 EYDTL 71
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPD--KNPDDEKAIETFHLLSKAIEVLLDKSA 85
D Y ++ + + I++AYR+ A K HPD K PD E F +++A EVL D+
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA---RFKEVAEAWEVLSDEQR 62
Query: 86 RAAYDSVIRRK 96
RA YD + + +
Sbjct: 63 RAEYDQMWQHR 73
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L + + I++AYR+ A K HPD + +++ A F L++A EVL D+ RA
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAEAWEVLKDEQRRA 87
Query: 88 AYDSVIRRKEE 98
YD + + + +
Sbjct: 88 EYDQLWQHRND 98
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 28 DLYGLLELTID-CSEQDIRSAYRKKALKCHPDKNPDDEK---AIETFHLLSKAIEVLLDK 83
+ Y +LE+ + +Q + AYR A K HPD+ + E+ A E F +++ A E L D
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75
Query: 84 SARAAYDSVI 93
A+ YD +
Sbjct: 76 EAKTNYDYYL 85
>pdb|2Z1A|A Chain A, Crystal Structure Of 5'-Nucleotidase Precursor From
Thermus Thermophilus Hb8
Length = 552
Score = 31.2 bits (69), Expect = 0.36, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 31 GLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKS-ARAAY 89
GLLE+T D + + AY+ +AL P+ P+D A E ++ + L+ + A A
Sbjct: 282 GLLEVTFDAKGELL--AYKGEALLMTPEAAPEDFFAKEALLAYAQPVMALMQQVIAEAKV 339
Query: 90 D-----SVIRRKE 97
D +V+RR+E
Sbjct: 340 DLVGERAVVRRRE 352
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD---DEKAIETFHLLSKAIEVLLDKS 84
D Y +L + + +Q+I AYRK AL+ HPD + +KA + F ++ A EVL D
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 85 ARAAYD 90
R +D
Sbjct: 443 XRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD---DEKAIETFHLLSKAIEVLLDKS 84
D Y +L + + +Q+I AYRK AL+ HPD + +KA + F ++ A EVL D
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 85 ARAAYD 90
R +D
Sbjct: 443 MRKKFD 448
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 15 IPLSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEK-AIETFHLL 73
+P SI+ ++ ++E E + + R+ LK HPDKNP++ A E F L
Sbjct: 9 VPRGSILKEVT-----SVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHL 63
Query: 74 SKAI-----EVLLDKSARAA 88
I + LD++A A
Sbjct: 64 QNEINRLEKQAFLDQNADRA 83
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 75 KAIEVLLDKSA-----RAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERY 129
+ I VLL KSA R A + + E K LDA + F L RR K+A + Y
Sbjct: 92 RPIGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNY 151
Query: 130 KG 131
G
Sbjct: 152 SG 153
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 75 KAIEVLLDKSA-----RAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERY 129
+ I VLL KSA R A + + E K LDA + F L RR K+A + Y
Sbjct: 95 RPIGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNY 154
Query: 130 KG 131
G
Sbjct: 155 SG 156
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD------EKAIETFHLLSKAIEVLL 81
D Y +L + D++ Y+K L HPDK D E+ ++ F + +A ++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 82 DKSARAAYD 90
++ + YD
Sbjct: 71 NEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD------EKAIETFHLLSKAIEVLL 81
D Y +L + D++ Y+K L HPDK D E+ ++ F + +A ++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 82 DKSARAAYD 90
++ + YD
Sbjct: 77 NEETKKKYD 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDK--NPDDEKAIET 69
D + +L + S ++ AYRK A+ HPDK P E A +
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKA 71
>pdb|2L9F|A Chain A, Nmr Solution Structure Of Meacp
Length = 102
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 62 DDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERRE 121
DD + ++ H+ S + L++++ARA S V + + AT ++ E LE RE
Sbjct: 36 DDSRFLDDLHMSSITVGQLVNEAARAMGLSA------VAMPTNFATATVREMAEALEARE 89
Query: 122 KEA 124
+EA
Sbjct: 90 REA 92
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 44 IRSAYRKKALKCHPDKNPDDEK 65
+R AY KK + HPDK D+EK
Sbjct: 27 MRKAYLKKCKEFHPDKGGDEEK 48
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 44 IRSAYRKKALKCHPDKNPDDEK 65
+R AY KK + HPDK D+EK
Sbjct: 30 MRKAYLKKCKEFHPDKGGDEEK 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,011,264
Number of Sequences: 62578
Number of extensions: 183365
Number of successful extensions: 803
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 66
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)