Query psy17599
Match_columns 180
No_of_seqs 277 out of 1340
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 18:10:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0713|consensus 99.9 3E-25 6.4E-30 187.6 9.2 80 19-98 8-87 (336)
2 COG0484 DnaJ DnaJ-class molecu 99.9 5.9E-25 1.3E-29 189.5 7.5 74 25-98 2-75 (371)
3 KOG0691|consensus 99.9 3E-23 6.6E-28 174.8 13.7 105 26-130 4-108 (296)
4 PRK14288 chaperone protein Dna 99.8 1.8E-21 4E-26 169.5 8.3 70 26-95 2-71 (369)
5 PRK14279 chaperone protein Dna 99.8 6.9E-21 1.5E-25 167.0 8.3 69 26-94 8-76 (392)
6 KOG0716|consensus 99.8 1.9E-20 4E-25 154.4 8.6 77 24-100 28-104 (279)
7 PRK14296 chaperone protein Dna 99.8 1.2E-20 2.5E-25 164.5 7.8 69 26-95 3-71 (372)
8 PRK14286 chaperone protein Dna 99.8 2.3E-20 4.9E-25 162.8 8.5 70 26-95 3-72 (372)
9 KOG0712|consensus 99.8 4E-20 8.7E-25 157.8 7.8 69 26-97 3-71 (337)
10 PF00226 DnaJ: DnaJ domain; I 99.8 8.9E-20 1.9E-24 120.8 7.3 63 28-90 1-64 (64)
11 PRK14282 chaperone protein Dna 99.8 1.1E-19 2.3E-24 158.4 8.0 70 26-95 3-73 (369)
12 PRK14294 chaperone protein Dna 99.8 1.4E-19 3.1E-24 157.4 8.7 70 26-95 3-72 (366)
13 PRK14277 chaperone protein Dna 99.8 1.4E-19 3.1E-24 158.4 8.7 70 26-95 4-73 (386)
14 PTZ00037 DnaJ_C chaperone prot 99.8 7.3E-20 1.6E-24 161.7 6.3 68 24-95 25-92 (421)
15 PRK14285 chaperone protein Dna 99.8 1.2E-19 2.6E-24 157.8 7.6 69 27-95 3-71 (365)
16 PRK14301 chaperone protein Dna 99.8 1.6E-19 3.5E-24 157.4 7.8 70 26-95 3-72 (373)
17 PRK14287 chaperone protein Dna 99.8 2.1E-19 4.5E-24 156.7 8.4 69 26-95 3-71 (371)
18 PRK14295 chaperone protein Dna 99.8 2E-19 4.3E-24 157.6 8.3 66 26-91 8-73 (389)
19 PRK14297 chaperone protein Dna 99.8 1.6E-19 3.5E-24 157.8 7.4 70 26-95 3-72 (380)
20 PRK14283 chaperone protein Dna 99.8 2.6E-19 5.6E-24 156.4 8.1 69 26-95 4-72 (378)
21 PRK14299 chaperone protein Dna 99.8 3.2E-19 7E-24 150.9 8.3 69 26-95 3-71 (291)
22 PRK14284 chaperone protein Dna 99.8 2.8E-19 6.1E-24 156.8 8.2 69 27-95 1-69 (391)
23 PRK14276 chaperone protein Dna 99.8 2.9E-19 6.3E-24 156.2 7.6 69 26-95 3-71 (380)
24 PRK10767 chaperone protein Dna 99.8 3.8E-19 8.2E-24 155.0 8.2 70 26-95 3-72 (371)
25 KOG0718|consensus 99.8 4.5E-19 9.7E-24 155.1 8.1 76 23-98 5-83 (546)
26 PRK14291 chaperone protein Dna 99.8 4.7E-19 1E-23 155.0 7.8 69 26-95 2-70 (382)
27 KOG0717|consensus 99.8 6.3E-19 1.4E-23 154.0 8.5 71 24-94 5-76 (508)
28 PRK14298 chaperone protein Dna 99.8 5.3E-19 1.1E-23 154.4 7.5 69 26-95 4-72 (377)
29 PRK14281 chaperone protein Dna 99.8 5.6E-19 1.2E-23 155.2 7.6 70 27-96 3-72 (397)
30 PRK14280 chaperone protein Dna 99.8 6.3E-19 1.4E-23 153.9 7.7 69 26-95 3-71 (376)
31 PRK14278 chaperone protein Dna 99.8 5.2E-19 1.1E-23 154.5 6.9 67 27-94 3-69 (378)
32 PRK14289 chaperone protein Dna 99.8 1.7E-18 3.8E-23 151.6 8.7 70 26-95 4-73 (386)
33 PRK14290 chaperone protein Dna 99.7 2.7E-18 5.8E-23 149.4 7.1 69 27-95 3-72 (365)
34 TIGR02349 DnaJ_bact chaperone 99.7 3.9E-18 8.5E-23 147.7 7.3 67 28-95 1-67 (354)
35 PRK05014 hscB co-chaperone Hsc 99.7 1.7E-17 3.7E-22 130.6 10.1 130 27-168 1-137 (171)
36 PRK10266 curved DNA-binding pr 99.7 6.8E-18 1.5E-22 143.7 8.2 67 27-94 4-70 (306)
37 KOG0721|consensus 99.7 9E-18 2E-22 134.6 8.1 92 5-96 74-168 (230)
38 PRK14300 chaperone protein Dna 99.7 5.6E-18 1.2E-22 147.7 7.1 68 27-95 3-70 (372)
39 PTZ00341 Ring-infected erythro 99.7 6.8E-18 1.5E-22 158.5 8.0 72 24-96 570-641 (1136)
40 KOG0715|consensus 99.7 6.2E-18 1.3E-22 142.9 6.9 72 24-96 40-111 (288)
41 PRK14292 chaperone protein Dna 99.7 6.5E-18 1.4E-22 147.2 7.2 68 27-95 2-69 (371)
42 smart00271 DnaJ DnaJ molecular 99.7 1.1E-17 2.5E-22 109.0 6.6 58 27-84 1-59 (60)
43 PRK14293 chaperone protein Dna 99.7 1.1E-17 2.3E-22 146.1 7.4 68 27-95 3-70 (374)
44 cd06257 DnaJ DnaJ domain or J- 99.7 3.1E-17 6.8E-22 105.0 7.1 55 28-82 1-55 (55)
45 KOG0719|consensus 99.7 2.1E-17 4.5E-22 133.9 7.7 100 26-125 13-119 (264)
46 PRK03578 hscB co-chaperone Hsc 99.7 9.6E-17 2.1E-21 126.8 10.8 130 26-168 5-141 (176)
47 PRK01356 hscB co-chaperone Hsc 99.7 6.3E-17 1.4E-21 126.8 9.6 126 27-168 2-133 (166)
48 PRK00294 hscB co-chaperone Hsc 99.7 6.4E-16 1.4E-20 121.8 10.6 96 25-123 2-104 (173)
49 COG2214 CbpA DnaJ-class molecu 99.7 2.2E-16 4.7E-21 124.8 8.0 68 26-93 5-73 (237)
50 TIGR03835 termin_org_DnaJ term 99.6 1.5E-15 3.2E-20 140.2 8.3 69 27-96 2-70 (871)
51 PHA03102 Small T antigen; Revi 99.6 1.1E-15 2.3E-20 118.1 5.2 65 27-95 5-71 (153)
52 KOG0720|consensus 99.6 1.8E-14 3.9E-19 126.3 10.1 73 26-99 234-306 (490)
53 KOG1150|consensus 99.5 1.4E-12 3.1E-17 103.8 15.3 74 22-95 48-122 (250)
54 PRK01773 hscB co-chaperone Hsc 99.5 2.7E-13 5.8E-18 106.9 10.4 128 27-168 2-138 (173)
55 KOG0722|consensus 99.5 6E-14 1.3E-18 115.3 6.4 71 24-95 30-100 (329)
56 KOG0624|consensus 99.4 2.1E-13 4.6E-18 116.9 5.8 71 23-93 390-463 (504)
57 PTZ00100 DnaJ chaperone protei 99.4 8.9E-13 1.9E-17 97.2 7.2 56 22-81 60-115 (116)
58 TIGR00714 hscB Fe-S protein as 99.4 3E-12 6.5E-17 99.5 9.4 117 38-168 2-124 (157)
59 COG5407 SEC63 Preprotein trans 99.4 8.4E-13 1.8E-17 115.8 6.8 90 5-94 72-170 (610)
60 KOG0714|consensus 99.4 6.1E-13 1.3E-17 109.8 4.6 69 26-94 2-71 (306)
61 KOG0550|consensus 99.3 1.1E-12 2.3E-17 114.4 5.1 72 22-93 368-440 (486)
62 PRK09430 djlA Dna-J like membr 99.3 1.7E-12 3.8E-17 108.7 6.2 58 25-82 198-262 (267)
63 PHA02624 large T antigen; Prov 99.2 9.9E-12 2.2E-16 113.5 6.7 60 26-89 10-71 (647)
64 COG5269 ZUO1 Ribosome-associat 99.1 8.8E-11 1.9E-15 97.6 5.0 78 15-92 31-113 (379)
65 KOG3192|consensus 98.7 1.3E-07 2.9E-12 72.7 8.4 129 25-170 6-141 (168)
66 KOG1789|consensus 98.4 5.9E-07 1.3E-11 86.2 7.1 53 26-81 1280-1336(2235)
67 KOG0723|consensus 98.3 2.1E-06 4.6E-11 62.1 5.7 52 28-83 57-108 (112)
68 KOG0568|consensus 98.2 9.7E-07 2.1E-11 72.3 3.7 59 23-82 43-102 (342)
69 KOG0431|consensus 97.4 0.00022 4.7E-09 64.2 4.6 51 30-80 391-448 (453)
70 COG1076 DjlA DnaJ-domain-conta 97.0 0.0009 1.9E-08 52.7 4.4 58 23-80 109-173 (174)
71 COG1076 DjlA DnaJ-domain-conta 96.9 0.00089 1.9E-08 52.7 3.1 67 28-94 2-75 (174)
72 PF03656 Pam16: Pam16; InterP 95.5 0.036 7.8E-07 41.7 5.5 50 28-81 59-108 (127)
73 PF13446 RPT: A repeated domai 87.9 1.3 2.8E-05 28.6 4.4 27 27-53 5-31 (62)
74 KOG1029|consensus 86.8 3.9 8.3E-05 39.5 8.3 15 143-157 380-394 (1118)
75 KOG0724|consensus 79.6 2.2 4.7E-05 36.7 3.5 56 38-93 3-62 (335)
76 PF14687 DUF4460: Domain of un 78.1 5.6 0.00012 29.2 4.8 46 37-82 4-53 (112)
77 PF11833 DUF3353: Protein of u 72.3 10 0.00022 30.4 5.4 38 36-81 1-38 (194)
78 CHL00185 ycf59 magnesium-proto 60.1 20 0.00043 31.3 5.0 74 7-81 227-305 (351)
79 cd01047 ACSF Aerobic Cyclase S 58.7 24 0.00052 30.4 5.2 66 14-80 221-288 (323)
80 PRK13654 magnesium-protoporphy 55.4 27 0.00058 30.6 5.1 73 7-80 231-308 (355)
81 TIGR02029 AcsF magnesium-proto 54.3 30 0.00066 30.0 5.2 66 14-80 231-298 (337)
82 KOG3442|consensus 54.2 19 0.00042 27.0 3.5 33 30-62 62-94 (132)
83 COG5552 Uncharacterized conser 53.5 65 0.0014 22.0 5.7 35 27-61 3-37 (88)
84 PLN02508 magnesium-protoporphy 48.0 43 0.00093 29.3 5.1 71 7-78 227-302 (357)
85 KOG0163|consensus 35.8 4.5E+02 0.0098 26.1 10.7 9 159-167 1003-1011(1259)
86 TIGR01069 mutS2 MutS2 family p 35.2 3.9E+02 0.0085 26.0 10.0 12 71-82 497-508 (771)
87 PRK00409 recombination and DNA 35.1 3.6E+02 0.0079 26.2 9.8 13 71-83 502-514 (782)
88 PF07709 SRR: Seven Residue Re 33.5 42 0.00092 15.1 1.7 13 69-81 2-14 (14)
89 PF07739 TipAS: TipAS antibiot 31.9 1.2E+02 0.0026 21.2 4.7 48 34-90 51-99 (118)
90 PF12725 DUF3810: Protein of u 28.4 2.2E+02 0.0048 24.5 6.5 58 25-82 80-148 (318)
91 PF06936 Selenoprotein_S: Sele 28.2 3.1E+02 0.0068 21.9 8.3 19 104-122 83-101 (190)
92 PF02216 B: B domain; InterPr 26.9 99 0.0021 19.7 3.0 31 27-60 11-41 (54)
93 PF08447 PAS_3: PAS fold; Int 25.9 20 0.00043 23.5 -0.3 28 27-58 6-34 (91)
94 PF03820 Mtc: Tricarboxylate c 25.5 1.4E+02 0.0031 25.7 4.8 53 35-87 44-122 (308)
95 PF03194 LUC7: LUC7 N_terminus 22.8 3.2E+02 0.007 22.7 6.4 18 33-50 53-70 (254)
96 PF15188 CCDC-167: Coiled-coil 22.7 2.4E+02 0.0053 19.6 4.7 18 139-156 52-69 (85)
97 cd01780 PLC_epsilon_RA Ubiquit 22.7 90 0.002 22.2 2.5 37 24-60 8-44 (93)
98 PF14738 PaaSYMP: Solute carri 22.7 2.6E+02 0.0056 21.6 5.3 21 80-100 68-88 (154)
99 PF12434 Malate_DH: Malate deh 22.4 1.3E+02 0.0028 16.5 2.5 17 41-57 10-26 (28)
100 PF14706 Tnp_DNA_bind: Transpo 21.6 1E+02 0.0023 19.8 2.5 42 41-84 14-57 (58)
101 COG2879 Uncharacterized small 21.6 1.6E+02 0.0034 19.5 3.3 15 47-61 27-41 (65)
102 PLN03086 PRLI-interacting fact 21.3 5.3E+02 0.012 24.3 7.9 10 166-175 64-73 (567)
103 TIGR01069 mutS2 MutS2 family p 20.7 7.9E+02 0.017 23.9 9.8 6 146-151 585-590 (771)
104 PF07412 Geminin: Geminin; In 20.7 1.5E+02 0.0033 24.0 3.8 79 70-172 89-169 (200)
105 cd01388 SOX-TCF_HMG-box SOX-TC 20.6 2.5E+02 0.0054 18.1 6.2 42 46-92 14-55 (72)
No 1
>KOG0713|consensus
Probab=99.92 E-value=3e-25 Score=187.63 Aligned_cols=80 Identities=43% Similarity=0.590 Sum_probs=73.5
Q ss_pred hhcccCCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17599 19 SIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE 98 (180)
Q Consensus 19 ~~~~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~ 98 (180)
+......+.|||+||||+.+|+..+||+|||+||++|||||||++|.|.+.|+.|+.||+|||||.+|..||.++.....
T Consensus 8 ~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 8 GAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK 87 (336)
T ss_pred hhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence 33444567899999999999999999999999999999999999999999999999999999999999999999966554
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.9e-25 Score=189.52 Aligned_cols=74 Identities=43% Similarity=0.627 Sum_probs=70.1
Q ss_pred CCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17599 25 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE 98 (180)
Q Consensus 25 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~ 98 (180)
...|||+||||+.+||.++||+|||+||++||||+|++++.|.++|+.|++||+|||||.+|+.||+++.+...
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 46799999999999999999999999999999999998899999999999999999999999999999876653
No 3
>KOG0691|consensus
Probab=99.90 E-value=3e-23 Score=174.81 Aligned_cols=105 Identities=45% Similarity=0.644 Sum_probs=98.7
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhh
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSK 105 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~~~~~~~~ 105 (180)
..|||.||||++++|..+|++||+..++.|||||||++|.|.+.|+.|.+||+||+||..|..||.++........+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~~~~d~ 83 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQGREDQ 83 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccchhhhhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999888888889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17599 106 LDATRKKFKEDLERREKEAENERYK 130 (180)
Q Consensus 106 ~~~~r~~~~e~le~rE~~~~~~~~~ 130 (180)
.+.++..|..++.+++..+.....+
T Consensus 84 ~~~~r~~f~~dl~~~~~~~~a~~~~ 108 (296)
T KOG0691|consen 84 ADGFRKKFGSDLFERERGALALLKE 108 (296)
T ss_pred HHHHHHHhhhhhhhhHHHHHhHHhh
Confidence 9999999999999999977765433
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.8e-21 Score=169.46 Aligned_cols=70 Identities=40% Similarity=0.675 Sum_probs=66.4
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
+.|||+||||+++||.++||+|||++|++||||+|++++.|.+.|+.|++||+||+||.+|+.||.++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 4699999999999999999999999999999999987788999999999999999999999999998754
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=6.9e-21 Score=167.01 Aligned_cols=69 Identities=42% Similarity=0.631 Sum_probs=66.2
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIR 94 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~ 94 (180)
..|||+||||+++|+.++||+|||+++++||||++++++.|.+.|+.|++||+||+||.+|+.||.++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 579999999999999999999999999999999998778899999999999999999999999999874
No 6
>KOG0716|consensus
Probab=99.83 E-value=1.9e-20 Score=154.37 Aligned_cols=77 Identities=36% Similarity=0.572 Sum_probs=71.5
Q ss_pred CCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q psy17599 24 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVK 100 (180)
Q Consensus 24 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~~~ 100 (180)
....|+|+||||+++|+.++||++||+++++||||+++++|++..+|+.||.||.||+||.+|..||.++.-.....
T Consensus 28 ~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~ 104 (279)
T KOG0716|consen 28 VIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLA 104 (279)
T ss_pred cchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999987665543
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.2e-20 Score=164.55 Aligned_cols=69 Identities=39% Similarity=0.556 Sum_probs=65.1
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++||+|||++|++||||+|+ ++.|.+.|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 469999999999999999999999999999999997 477899999999999999999999999998754
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.3e-20 Score=162.77 Aligned_cols=70 Identities=36% Similarity=0.605 Sum_probs=66.4
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++||+|||+++++||||+|++++.+.+.|+.|++||+||+||.+|..||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 4699999999999999999999999999999999987788899999999999999999999999998754
No 9
>KOG0712|consensus
Probab=99.81 E-value=4e-20 Score=157.76 Aligned_cols=69 Identities=48% Similarity=0.678 Sum_probs=65.0
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKE 97 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~ 97 (180)
+..||.||||+++||..+||+|||+|+++|||||||+ +.++|..|+.||+|||||.+|..||+++....
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 5789999999999999999999999999999999986 68999999999999999999999999996654
No 10
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.81 E-value=8.9e-20 Score=120.81 Aligned_cols=63 Identities=41% Similarity=0.682 Sum_probs=59.8
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17599 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDE-KAIETFHLLSKAIEVLLDKSARAAYD 90 (180)
Q Consensus 28 d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~iL~dp~~R~~YD 90 (180)
|||+||||+++++.++|+++|+++++.+|||++++++ .+...|..|+.||++|+||..|..||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6999999999999999999999999999999987655 57899999999999999999999998
No 11
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.1e-19 Score=158.40 Aligned_cols=70 Identities=30% Similarity=0.563 Sum_probs=65.2
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++|++|||+++++||||+|+++ +.|.+.|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 46999999999999999999999999999999999864 66889999999999999999999999998753
No 12
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.4e-19 Score=157.40 Aligned_cols=70 Identities=43% Similarity=0.653 Sum_probs=66.5
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++|++|||+++++||||++++++.+.+.|..|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 4799999999999999999999999999999999987788899999999999999999999999998754
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.4e-19 Score=158.43 Aligned_cols=70 Identities=37% Similarity=0.612 Sum_probs=66.3
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++|++|||+++++||||++++++.+.+.|+.|++||+||+||.+|..||.++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 3699999999999999999999999999999999987788899999999999999999999999998754
No 14
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.79 E-value=7.3e-20 Score=161.70 Aligned_cols=68 Identities=43% Similarity=0.684 Sum_probs=62.7
Q ss_pred CCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 24 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 24 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
+...|||+||||+++||.++||+|||++|++||||+|++ .+.|+.|++||+||+||.+|+.||.++..
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 345799999999999999999999999999999999863 47999999999999999999999998764
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=157.85 Aligned_cols=69 Identities=41% Similarity=0.622 Sum_probs=65.9
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
.|||+||||+++||.++||+|||+++++||||+|++++.+.+.|+.|++||+||+||.+|..||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 699999999999999999999999999999999987788899999999999999999999999998754
No 16
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.6e-19 Score=157.44 Aligned_cols=70 Identities=43% Similarity=0.655 Sum_probs=66.3
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++|++|||+++++||||++++++.+.+.|+.|++||+||+||.+|..||.++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 4699999999999999999999999999999999987788889999999999999999999999998754
No 17
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.1e-19 Score=156.66 Aligned_cols=69 Identities=32% Similarity=0.479 Sum_probs=64.7
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++||+|||+++++||||+|++ +.+.+.|+.|++||++|+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 4699999999999999999999999999999999974 77889999999999999999999999998753
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2e-19 Score=157.65 Aligned_cols=66 Identities=42% Similarity=0.651 Sum_probs=63.6
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDS 91 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~ 91 (180)
..|||+||||+++||.++||+|||+++++||||++++++.+.+.|+.|++||+||+||.+|+.||.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 469999999999999999999999999999999998777889999999999999999999999998
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.6e-19 Score=157.79 Aligned_cols=70 Identities=37% Similarity=0.579 Sum_probs=66.2
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++|++|||+++++||||++++++.+.+.|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 3699999999999999999999999999999999987788899999999999999999999999998754
No 20
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.6e-19 Score=156.39 Aligned_cols=69 Identities=36% Similarity=0.530 Sum_probs=65.2
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++||+|||+++++||||+|++ +.+.+.|+.|++||++|+||.+|..||.++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 5799999999999999999999999999999999984 78899999999999999999999999998754
No 21
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.2e-19 Score=150.91 Aligned_cols=69 Identities=33% Similarity=0.479 Sum_probs=64.9
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++||+|||+++++||||+++ ++.+.+.|+.|++||++|+||.+|..||.++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 469999999999999999999999999999999997 577889999999999999999999999998754
No 22
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.8e-19 Score=156.79 Aligned_cols=69 Identities=42% Similarity=0.662 Sum_probs=65.7
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
.|||+||||+++||.++||+|||+++++||||+|++++.+.+.|+.|++||+||+||.+|..||.++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 489999999999999999999999999999999998788999999999999999999999999998754
No 23
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.9e-19 Score=156.18 Aligned_cols=69 Identities=36% Similarity=0.520 Sum_probs=64.7
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++|++|||+++++||||+|++ +.+.+.|+.|++||++|+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 4699999999999999999999999999999999984 67889999999999999999999999998753
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.8e-19 Score=155.00 Aligned_cols=70 Identities=44% Similarity=0.675 Sum_probs=66.1
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++||+|||+++++||||++++++.+.+.|..|++||++|+||.+|..||.++..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 4699999999999999999999999999999999987788889999999999999999999999998754
No 25
>KOG0718|consensus
Probab=99.78 E-value=4.5e-19 Score=155.11 Aligned_cols=76 Identities=36% Similarity=0.614 Sum_probs=68.8
Q ss_pred cCCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17599 23 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD---EKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE 98 (180)
Q Consensus 23 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~---~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~ 98 (180)
...+.|||.+||||++||.++|++|||++++.|||||..++ ..|.+.|+.|..||+||+||.+|+.||.++.....
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 34567999999999999999999999999999999998643 34788999999999999999999999999987775
No 26
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.7e-19 Score=154.98 Aligned_cols=69 Identities=33% Similarity=0.535 Sum_probs=65.0
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++||+|||+++++||||+|++ +.+.+.|+.|++||+||+||.+|..||.++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 3699999999999999999999999999999999985 77889999999999999999999999998764
No 27
>KOG0717|consensus
Probab=99.77 E-value=6.3e-19 Score=153.99 Aligned_cols=71 Identities=44% Similarity=0.656 Sum_probs=66.2
Q ss_pred CCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17599 24 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKAIEVLLDKSARAAYDSVIR 94 (180)
Q Consensus 24 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~ 94 (180)
...++||+||||..+|++.+|+++||++||+|||||||+. .++++.|+.|+.||+|||||..|+.||....
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 3467999999999999999999999999999999998865 6789999999999999999999999998776
No 28
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.3e-19 Score=154.44 Aligned_cols=69 Identities=45% Similarity=0.625 Sum_probs=64.5
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++|++|||+++++||||+|++ +.+.+.|+.|++||+||+||.+|+.||.++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 3699999999999999999999999999999999974 77889999999999999999999999998753
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.6e-19 Score=155.22 Aligned_cols=70 Identities=40% Similarity=0.627 Sum_probs=66.2
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 96 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~ 96 (180)
.|||+||||+++|+.++||+|||+++++||||++++++.+.+.|+.|++||++|+||.+|..||.++...
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~ 72 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG 72 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence 5999999999999999999999999999999999877788899999999999999999999999987643
No 30
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.3e-19 Score=153.88 Aligned_cols=69 Identities=41% Similarity=0.568 Sum_probs=64.6
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++||+|||+++++||||++++ +.+.+.|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 3699999999999999999999999999999999974 67889999999999999999999999998753
No 31
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.2e-19 Score=154.53 Aligned_cols=67 Identities=45% Similarity=0.590 Sum_probs=63.9
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIR 94 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~ 94 (180)
.|||+||||+++||.++|++|||+++++||||+|+ ++.+.+.|+.|++||+||+||.+|..||.++.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 69999999999999999999999999999999998 57888999999999999999999999999875
No 32
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.7e-18 Score=151.58 Aligned_cols=70 Identities=39% Similarity=0.624 Sum_probs=66.6
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..|||+||||+++||.++|++|||+++++||||++++++.+.+.|+.|++||++|+||.+|+.||.++..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 4799999999999999999999999999999999988788999999999999999999999999998754
No 33
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.7e-18 Score=149.43 Aligned_cols=69 Identities=38% Similarity=0.565 Sum_probs=64.7
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDE-KAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
.|||+||||+++||..+|++|||+++++||||++++++ .|.+.|+.|++||++|+||.+|..||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 69999999999999999999999999999999998664 7889999999999999999999999998753
No 34
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.74 E-value=3.9e-18 Score=147.73 Aligned_cols=67 Identities=45% Similarity=0.668 Sum_probs=63.3
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 28 d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
|||+||||+++|+.++||+||++++++||||+++ ++.+.+.|+.|++||++|+||.+|..||.++..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 7999999999999999999999999999999997 567889999999999999999999999998754
No 35
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.73 E-value=1.7e-17 Score=130.57 Aligned_cols=130 Identities=21% Similarity=0.228 Sum_probs=85.2
Q ss_pred cchhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDEK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEV 99 (180)
Q Consensus 27 ~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~~ 99 (180)
+|||+||||+++ ++..+|+++|+++++++|||+.++.+. +...|..||+||++|+||..|+.|+..+.+....
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~ 80 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA 80 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCCccc
Confidence 489999999996 678999999999999999999765432 5678999999999999999999999877643221
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q psy17599 100 KIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGKYPLKPVLYVFRINL 168 (180)
Q Consensus 100 ~~~~~~~~~~r~~~~e~le~rE~~~~~~~~~~~~~~~~~~~~~~~ei~rlr~eg~r~~~e~~~~~~~~~ 168 (180)
....... ...=+++.++-+|.-....... .....+..|..+...+..+....+...|
T Consensus 81 ~~~~~~~--d~efLme~me~rE~le~~~~~~----------d~~~~l~~l~~~~~~~~~~~~~~l~~~~ 137 (171)
T PRK05014 81 HEQHTVR--DTAFLMEQMELREELEDIEQSK----------DPEAALESFIKRVKKMFKTRLQQMVEQL 137 (171)
T ss_pred cccCCcC--CHHHHHHHHHHHHHHHhhcccc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1234566666666533221100 1123355555555555555555555444
No 36
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.73 E-value=6.8e-18 Score=143.74 Aligned_cols=67 Identities=33% Similarity=0.508 Sum_probs=63.2
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIR 94 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~ 94 (180)
.|||+||||++++|.++|++|||+++++||||++++ +.+.+.|..|++||++|+||.+|+.||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 699999999999999999999999999999999874 6788999999999999999999999999863
No 37
>KOG0721|consensus
Probab=99.73 E-value=9e-18 Score=134.65 Aligned_cols=92 Identities=30% Similarity=0.515 Sum_probs=76.6
Q ss_pred HHHHHHHhchhhhhhh---cccCCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcC
Q psy17599 5 MCNIVWSFPAIPLSSI---MADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLL 81 (180)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~ 81 (180)
+..++|+++++++... .......|||+||||+|++|..+||+|||+|++++||||+|......+.|..|++||..|+
T Consensus 74 ~lv~~W~v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLT 153 (230)
T KOG0721|consen 74 FLVVGWAVIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALT 153 (230)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhc
Confidence 4456677666554433 3455668999999999999999999999999999999999865566778999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy17599 82 DKSARAAYDSVIRRK 96 (180)
Q Consensus 82 dp~~R~~YD~~~~~~ 96 (180)
|+..|..|..++...
T Consensus 154 D~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 154 DKKSRENWEKYGNPD 168 (230)
T ss_pred chhhHHHHHHhCCCC
Confidence 999999999987643
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.6e-18 Score=147.74 Aligned_cols=68 Identities=34% Similarity=0.510 Sum_probs=63.9
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
.|||+||||+++||.++|++|||+++++||||+++ ++.+.+.|..|++||++|+||.+|..||.++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 59999999999999999999999999999999997 466788999999999999999999999998754
No 39
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.73 E-value=6.8e-18 Score=158.45 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=66.6
Q ss_pred CCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17599 24 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 96 (180)
Q Consensus 24 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~ 96 (180)
....+||+||||+++||..+||+|||++|++||||++|++ .+...|+.|+.||+|||||.+|..||.+|..+
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 3468999999999999999999999999999999999874 67889999999999999999999999987654
No 40
>KOG0715|consensus
Probab=99.72 E-value=6.2e-18 Score=142.87 Aligned_cols=72 Identities=36% Similarity=0.531 Sum_probs=66.9
Q ss_pred CCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17599 24 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 96 (180)
Q Consensus 24 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~ 96 (180)
....|||+||||+++|+..+||+||++|+++||||.|.+ +.+.+.|+.|..||+||+|+.+|..||..+...
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 344499999999999999999999999999999999986 589999999999999999999999999998765
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=6.5e-18 Score=147.24 Aligned_cols=68 Identities=43% Similarity=0.634 Sum_probs=64.2
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
+|||+||||+++||.++|++||++++++||||+++ ++.+.+.|+.|++||++|+||.+|+.||.++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 59999999999999999999999999999999997 477889999999999999999999999998753
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.72 E-value=1.1e-17 Score=109.01 Aligned_cols=58 Identities=48% Similarity=0.703 Sum_probs=54.3
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHcCCHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD-DEKAIETFHLLSKAIEVLLDKS 84 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~a~~~f~~i~~Ay~iL~dp~ 84 (180)
.|||+||||+++++..+|+++|+++++.+|||++++ .+.+...|..|+.||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999986 5778899999999999999984
No 43
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.1e-17 Score=146.10 Aligned_cols=68 Identities=35% Similarity=0.569 Sum_probs=64.1
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
.|||+||||+++||.++|++|||+++++||||++++ +.+.+.|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 699999999999999999999999999999999974 67889999999999999999999999998753
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.71 E-value=3.1e-17 Score=105.03 Aligned_cols=55 Identities=53% Similarity=0.822 Sum_probs=51.8
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCC
Q psy17599 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLD 82 (180)
Q Consensus 28 d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~d 82 (180)
|||+||||+++++.++|+++|+++++.+|||++++.+.+...|..|+.||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999997546778999999999999987
No 45
>KOG0719|consensus
Probab=99.71 E-value=2.1e-17 Score=133.88 Aligned_cols=100 Identities=39% Similarity=0.568 Sum_probs=77.5
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNP--DDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEV-KIR 102 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~--~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~~-~~~ 102 (180)
..|+|+||||..+|+..+|++||+++++.||||+++ +..++...|+.|+.||.||+|..+|+.||..+...... ...
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd~~~d~~ 92 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDDESGDID 92 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCCccchhh
Confidence 459999999999999999999999999999999995 33578899999999999999999999999987655221 111
Q ss_pred hhhhHHHHHHHH----HHHHHHHHHHH
Q psy17599 103 NSKLDATRKKFK----EDLERREKEAE 125 (180)
Q Consensus 103 ~~~~~~~r~~~~----e~le~rE~~~~ 125 (180)
....+.++.-++ ++++.-++..+
T Consensus 93 ~~~~e~~~~iyk~VteedIeef~a~Y~ 119 (264)
T KOG0719|consen 93 EDWLEFWRAIYKKVTEEDIEEFEANYQ 119 (264)
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHhc
Confidence 222334444444 56666665443
No 46
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.71 E-value=9.6e-17 Score=126.81 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=86.3
Q ss_pred CcchhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDEK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE 98 (180)
Q Consensus 26 ~~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~ 98 (180)
..|||+|||||++ ++..+|+++|++++++||||++++.+. +.+.+..||.||.+|+||.+|+.|+..+.+...
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~~ 84 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDV 84 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCCC
Confidence 4799999999995 688999999999999999999875544 344578999999999999999999987764322
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q psy17599 99 VKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGKYPLKPVLYVFRINL 168 (180)
Q Consensus 99 ~~~~~~~~~~~r~~~~e~le~rE~~~~~~~~~~~~~~~~~~~~~~~ei~rlr~eg~r~~~e~~~~~~~~~ 168 (180)
........ ...=+++.++-+|.-....... . ..+|+.|..+...+++.....+...|
T Consensus 85 ~~e~~~~~--d~~fLme~mE~rE~lee~~~~~----d-------~~~L~~l~~e~~~~~~~~~~~l~~~~ 141 (176)
T PRK03578 85 QAENNTAM--PPAFLMQQMEWREAIEDARAAR----D-------VDALDALLAELRDERRERYAELGALL 141 (176)
T ss_pred ccccCCCC--CHHHHHHHHHHHHHHHHhhccC----C-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 1224566666666533221100 0 23456666655555555555555544
No 47
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.71 E-value=6.3e-17 Score=126.76 Aligned_cols=126 Identities=16% Similarity=0.190 Sum_probs=84.4
Q ss_pred cchhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDEK---AIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKI 101 (180)
Q Consensus 27 ~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~~---a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~~~~ 101 (180)
.|||+||||+++ ++..+|+++|+++++++|||++++... +...|..||+||.||+||.+|+.|+..+.+......
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~~~~~ 81 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINLNDE 81 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCCCCCc
Confidence 599999999996 789999999999999999999865322 335688999999999999999999988753221111
Q ss_pred Hh-hhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q psy17599 102 RN-SKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGKYPLKPVLYVFRINL 168 (180)
Q Consensus 102 ~~-~~~~~~r~~~~e~le~rE~~~~~~~~~~~~~~~~~~~~~~~ei~rlr~eg~r~~~e~~~~~~~~~ 168 (180)
.. ... ...=+++.++.+|.-..... ..+|+.|..+...........+...|
T Consensus 82 ~~~~~~--d~~fLme~me~rE~le~~~~--------------~~~L~~l~~~~~~~~~~~~~~l~~~f 133 (166)
T PRK01356 82 KTRSLL--SPLELSIFWDEMERIENTIL--------------FSDLEKIKNKYELMYKNEIDSLKQAF 133 (166)
T ss_pred cccccC--CHHHHHHHHHHHHHHHcCCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 111 12245556666655322200 12356666666555555555555555
No 48
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.66 E-value=6.4e-16 Score=121.77 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=73.0
Q ss_pred CCcchhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17599 25 KDLDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDEK-----AIETFHLLSKAIEVLLDKSARAAYDSVIRRKE 97 (180)
Q Consensus 25 ~~~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~ 97 (180)
...|||++|||+++ ++..+|+++|+++++++|||++++.+. +...|..||.||.+|+||.+|+.|+..+.+..
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~ 81 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHE 81 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCC
Confidence 46799999999997 668999999999999999999876543 56789999999999999999999999876432
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy17599 98 EVKIRNSKLDATRKKFKEDLERREKE 123 (180)
Q Consensus 98 ~~~~~~~~~~~~r~~~~e~le~rE~~ 123 (180)
.... .... ...=+++.++-+|.-
T Consensus 82 ~~~~-~~~~--d~~fLme~me~rE~l 104 (173)
T PRK00294 82 VPLE-VTVH--DPEFLLQQMQLREEL 104 (173)
T ss_pred CCcc-cCCC--CHHHHHHHHHHHHHH
Confidence 2111 1111 123466666666653
No 49
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.2e-16 Score=124.83 Aligned_cols=68 Identities=46% Similarity=0.690 Sum_probs=64.6
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEK-AIETFHLLSKAIEVLLDKSARAAYDSVI 93 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~-a~~~f~~i~~Ay~iL~dp~~R~~YD~~~ 93 (180)
..|||+||||+++|+..+|+++|++++++||||++++++. +.+.|..|++||.+|+||..|..||..+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4799999999999999999999999999999999998775 8999999999999999999999999864
No 50
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.61 E-value=1.5e-15 Score=140.15 Aligned_cols=69 Identities=36% Similarity=0.523 Sum_probs=64.6
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRK 96 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~ 96 (180)
.|||+||||+++|+..+||++||+++++||||++++ +.+...|+.|+.||++|+||.+|..||.++...
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 599999999999999999999999999999999975 778889999999999999999999999987644
No 51
>PHA03102 Small T antigen; Reviewed
Probab=99.59 E-value=1.1e-15 Score=118.08 Aligned_cols=65 Identities=25% Similarity=0.255 Sum_probs=59.9
Q ss_pred cchhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 27 ~d~Y~iLgv~~~a--s~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
..+|+||||+++| |..+||+|||++++++|||++++ .+.|+.|+.||++|+|+..|..||.++..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 4689999999999 99999999999999999999864 36999999999999999999999998754
No 52
>KOG0720|consensus
Probab=99.56 E-value=1.8e-14 Score=126.25 Aligned_cols=73 Identities=42% Similarity=0.653 Sum_probs=68.6
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEV 99 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~~ 99 (180)
..|+|.+|||+++++.++||+.||++|..+|||||. .|.|.+.|..|..||++|+|+.+|..||..+......
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene~ 306 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENEL 306 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 689999999999999999999999999999999997 6999999999999999999999999999988765544
No 53
>KOG1150|consensus
Probab=99.50 E-value=1.4e-12 Score=103.81 Aligned_cols=74 Identities=31% Similarity=0.567 Sum_probs=65.7
Q ss_pred ccCCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 22 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 22 ~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
+..-++|||+||.|.|..+.++|++.||++++..||||||++ +.|...|..+.+||.+|-|+.-|..-+....+
T Consensus 48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~y~~ 122 (250)
T KOG1150|consen 48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDVYTA 122 (250)
T ss_pred ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 344678999999999999999999999999999999999998 77899999999999999999977766554443
No 54
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=2.7e-13 Score=106.91 Aligned_cols=128 Identities=19% Similarity=0.256 Sum_probs=86.5
Q ss_pred cchhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-
Q psy17599 27 LDLYGLLELTID--CSEQDIRSAYRKKALKCHPDKNPDDE-----KAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE- 98 (180)
Q Consensus 27 ~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~- 98 (180)
.|||++||||+. .+...+++.|+.+...+|||+..+.+ .+.+....||+||.+|+||.+|+.|-..+.++..
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~~ 81 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQ 81 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCCC
Confidence 599999999986 89999999999999999999976543 2456789999999999999999999998873211
Q ss_pred -HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q psy17599 99 -VKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGKYPLKPVLYVFRINL 168 (180)
Q Consensus 99 -~~~~~~~~~~~r~~~~e~le~rE~~~~~~~~~~~~~~~~~~~~~~~ei~rlr~eg~r~~~e~~~~~~~~~ 168 (180)
.+...... ..=+++.++-+|.-....... . ...++.|..+......+....+...|
T Consensus 82 ~~e~~~~~d---~~fLme~ME~rE~lee~~~~~------d-----~~~L~~l~~~v~~~~~~~~~~l~~~~ 138 (173)
T PRK01773 82 NLEEKSTQD---MAFLMQQMEWREQLEEIEQQQ------D-----EDALTAFSKEIKQEQQAILTELSTAL 138 (173)
T ss_pred CcccccCCC---HHHHHHHHHHHHHHHhhcccC------C-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 234566666666533221100 0 23466666666666666666665555
No 55
>KOG0722|consensus
Probab=99.48 E-value=6e-14 Score=115.28 Aligned_cols=71 Identities=28% Similarity=0.501 Sum_probs=65.0
Q ss_pred CCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17599 24 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR 95 (180)
Q Consensus 24 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~ 95 (180)
....|.|+||||+.+++..+|.+|||+|++++|||++++ +.+...|..|..||++|.|...|..||-.+..
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyaldh 100 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYALDH 100 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence 345799999999999999999999999999999999985 66679999999999999999999999987753
No 56
>KOG0624|consensus
Probab=99.42 E-value=2.1e-13 Score=116.85 Aligned_cols=71 Identities=38% Similarity=0.492 Sum_probs=63.6
Q ss_pred cCCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17599 23 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDE---KAIETFHLLSKAIEVLLDKSARAAYDSVI 93 (180)
Q Consensus 23 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~ 93 (180)
.....|||.||||..+|+..+|.+|||+++.+||||...+.. .|...|.-|..|-+||+||.+|..||..-
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 345689999999999999999999999999999999876542 47889999999999999999999999753
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.40 E-value=8.9e-13 Score=97.23 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=49.0
Q ss_pred ccCCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcC
Q psy17599 22 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLL 81 (180)
Q Consensus 22 ~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~ 81 (180)
..+...++|+||||++++|.++|+++||++++++|||++++ ...|..|++||++|.
T Consensus 60 ~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 60 NPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL 115 (116)
T ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence 34445799999999999999999999999999999998642 467899999999985
No 58
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.38 E-value=3e-12 Score=99.51 Aligned_cols=117 Identities=22% Similarity=0.232 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHHH
Q psy17599 38 DCSEQDIRSAYRKKALKCHPDKNPDDE-----KAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIR-NSKLDATRK 111 (180)
Q Consensus 38 ~as~~eIkkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~~~~~-~~~~~~~r~ 111 (180)
+.+..+|+++|++++.++|||+.++.+ .+...|..||+||.+|+||.+|+.|+..+.+....... ......
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~~~~e~~~~~d~~--- 78 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGIDLASEQHSVRDTA--- 78 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCcccCCCCCHH---
Confidence 357889999999999999999965432 25678999999999999999999999998743221111 111222
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q psy17599 112 KFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGKYPLKPVLYVFRINL 168 (180)
Q Consensus 112 ~~~e~le~rE~~~~~~~~~~~~~~~~~~~~~~~ei~rlr~eg~r~~~e~~~~~~~~~ 168 (180)
=+++.++-+|.-....... . ..+|+.|..+...+.......+...|
T Consensus 79 fLme~Me~rE~lee~~~~~------d-----~~~L~~l~~~~~~~~~~~~~~l~~~~ 124 (157)
T TIGR00714 79 FLMEQLELREELDEIEQAK------D-----EARLESFIKRVKKMFQTRHQLLVEQL 124 (157)
T ss_pred HHHHHHHHHHHHHHHHhCC------C-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444422111100 0 23566666666666666666666655
No 59
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.37 E-value=8.4e-13 Score=115.80 Aligned_cols=90 Identities=30% Similarity=0.451 Sum_probs=75.1
Q ss_pred HHHHHHHhchhhhhhhcc----cCCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHH
Q psy17599 5 MCNIVWSFPAIPLSSIMA----DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-----EKAIETFHLLSK 75 (180)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~----~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~ 75 (180)
+..++|.+.++++..+.. .....|||+||||+.+++..+||++||+|+.++||||.+.- ....+.+..|++
T Consensus 72 f~ivgWl~i~~L~~~I~~~k~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~Itk 151 (610)
T COG5407 72 FTIVGWLVISYLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITK 151 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHH
Confidence 445677777766655433 44567999999999999999999999999999999997651 356788999999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q psy17599 76 AIEVLLDKSARAAYDSVIR 94 (180)
Q Consensus 76 Ay~iL~dp~~R~~YD~~~~ 94 (180)
||..|+|...|..|-.++.
T Consensus 152 AY~~lTd~k~renyl~yGt 170 (610)
T COG5407 152 AYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred HHHhhhhHHHHHHHHhcCC
Confidence 9999999999999998854
No 60
>KOG0714|consensus
Probab=99.35 E-value=6.1e-13 Score=109.79 Aligned_cols=69 Identities=45% Similarity=0.634 Sum_probs=62.7
Q ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17599 26 DLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKAIEVLLDKSARAAYDSVIR 94 (180)
Q Consensus 26 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~ 94 (180)
..|||.||||+++|+..+|++||+++++.||||+++.+ ..+...|.+|.+||++|+||.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999999999998865 2344589999999999999999999999986
No 61
>KOG0550|consensus
Probab=99.34 E-value=1.1e-12 Score=114.37 Aligned_cols=72 Identities=35% Similarity=0.518 Sum_probs=65.9
Q ss_pred ccCCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17599 22 ADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKAIEVLLDKSARAAYDSVI 93 (180)
Q Consensus 22 ~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~ 93 (180)
+..+..|||.||||+.+++..+|+++|+++++.||||++.++ .++...|..+.+||.||+||.+|..||..-
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 344568999999999999999999999999999999999887 678889999999999999999999999753
No 62
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.33 E-value=1.7e-12 Score=108.73 Aligned_cols=58 Identities=31% Similarity=0.366 Sum_probs=51.2
Q ss_pred CCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHHHHHcCC
Q psy17599 25 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD---D----EKAIETFHLLSKAIEVLLD 82 (180)
Q Consensus 25 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~---~----~~a~~~f~~i~~Ay~iL~d 82 (180)
.-.|+|+||||++++|.++||++||+++++||||++.+ + +.+.+.|+.|+.||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999999999999642 1 3578899999999999974
No 63
>PHA02624 large T antigen; Provisional
Probab=99.25 E-value=9.9e-12 Score=113.51 Aligned_cols=60 Identities=28% Similarity=0.359 Sum_probs=56.1
Q ss_pred CcchhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy17599 26 DLDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAY 89 (180)
Q Consensus 26 ~~d~Y~iLgv~~~a--s~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~Y 89 (180)
..++|++|||+++| +..+||+|||+++++||||++++ .+.|+.|+.||++|+|+.++..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 46999999999999 99999999999999999999753 47899999999999999999998
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.8e-11 Score=97.61 Aligned_cols=78 Identities=37% Similarity=0.471 Sum_probs=67.4
Q ss_pred hhhhhhcccCCCcchhhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCchHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy17599 15 IPLSSIMADIKDLDLYGLLELTI---DCSEQDIRSAYRKKALKCHPDKN--PDDEKAIETFHLLSKAIEVLLDKSARAAY 89 (180)
Q Consensus 15 ~~~~~~~~~~~~~d~Y~iLgv~~---~as~~eIkkayr~l~~~~HPDk~--~~~~~a~~~f~~i~~Ay~iL~dp~~R~~Y 89 (180)
.++......|...|+|.+|||+. .+++.+|.+++++.+.+||||+. +++-...+.|..|+.||+||+|+..|..|
T Consensus 31 ~~~~~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qy 110 (379)
T COG5269 31 LYTREDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQY 110 (379)
T ss_pred HHHhhhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhc
Confidence 34556678899999999999986 58889999999999999999996 33445678999999999999999999999
Q ss_pred HHH
Q psy17599 90 DSV 92 (180)
Q Consensus 90 D~~ 92 (180)
|..
T Consensus 111 DS~ 113 (379)
T COG5269 111 DSN 113 (379)
T ss_pred ccc
Confidence 963
No 65
>KOG3192|consensus
Probab=98.67 E-value=1.3e-07 Score=72.72 Aligned_cols=129 Identities=19% Similarity=0.271 Sum_probs=90.5
Q ss_pred CCcchhhhcCCC--CCCCHHHHHHHHHHHHHHhCCCCCCC----c-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17599 25 KDLDLYGLLELT--IDCSEQDIRSAYRKKALKCHPDKNPD----D-EKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKE 97 (180)
Q Consensus 25 ~~~d~Y~iLgv~--~~as~~eIkkayr~l~~~~HPDk~~~----~-~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~~~~ 97 (180)
...+||.++|.. +..+++.+..-|.-...++|||+... + ..|.+....+|+||.+|.||-.|+.|-..+....
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e 85 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQE 85 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 457999999864 45667777778999999999999421 1 2477889999999999999999999998877643
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q psy17599 98 EVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGKYPLKPVLYVFRINLWL 170 (180)
Q Consensus 98 ~~~~~~~~~~~~r~~~~e~le~rE~~~~~~~~~~~~~~~~~~~~~~~ei~rlr~eg~r~~~e~~~~~~~~~~~ 170 (180)
.... .......-+++.|+-.|.--...- ...+.+|+.+...++......+++.++.
T Consensus 86 ~~sn---e~stDpe~Lmevle~~E~IS~~~D--------------e~~l~~lk~q~q~ri~q~~~qlge~~es 141 (168)
T KOG3192|consen 86 QTSN---ELSTDPEFLMEVLEYHEAISEMDD--------------EEDLKQLKSQNQERIAQCKQQLGEAFES 141 (168)
T ss_pred Cchh---hhccCHHHHHHHHHHHHHHHhccC--------------cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3322 122234456777776665332211 2346677777777777777777777653
No 66
>KOG1789|consensus
Probab=98.41 E-value=5.9e-07 Score=86.16 Aligned_cols=53 Identities=36% Similarity=0.430 Sum_probs=45.5
Q ss_pred CcchhhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcC
Q psy17599 26 DLDLYGLLELTID----CSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLL 81 (180)
Q Consensus 26 ~~d~Y~iLgv~~~----as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~ 81 (180)
.-+-|+||.|+-+ -....|+++|++++.+||||||| +.-+.|..+++||+.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence 3478999999753 34578999999999999999996 45789999999999998
No 67
>KOG0723|consensus
Probab=98.27 E-value=2.1e-06 Score=62.11 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=43.9
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCH
Q psy17599 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDK 83 (180)
Q Consensus 28 d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp 83 (180)
.--.||||+|+++.+.||.++|+..+..|||+.++ | -.-..||+|+++|...
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-P---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-P---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-H---HHHHHHHHHHHHHhcc
Confidence 33459999999999999999999999999999865 4 3446799999998753
No 68
>KOG0568|consensus
Probab=98.23 E-value=9.7e-07 Score=72.33 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=50.8
Q ss_pred cCCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-HcCC
Q psy17599 23 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIE-VLLD 82 (180)
Q Consensus 23 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~-iL~d 82 (180)
...-+.+|.||||..+|+.++++.+|..++..+|||... +....+.|.+|.+||. ||+.
T Consensus 43 ke~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 43 KEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHH
Confidence 334578999999999999999999999999999999875 3556789999999998 6653
No 69
>KOG0431|consensus
Probab=97.37 E-value=0.00022 Score=64.18 Aligned_cols=51 Identities=31% Similarity=0.401 Sum_probs=38.0
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-------HHHHHHHHHHHHHHHc
Q psy17599 30 YGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDE-------KAIETFHLLSKAIEVL 80 (180)
Q Consensus 30 Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~-------~a~~~f~~i~~Ay~iL 80 (180)
|+=.++..=++...||++||+.++.+||||.++.+ -+.+.|..+++||+..
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556679999999999999999999976542 2456677777777643
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0009 Score=52.70 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=47.6
Q ss_pred cCCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--c-----hHHHHHHHHHHHHHHHc
Q psy17599 23 DIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD--D-----EKAIETFHLLSKAIEVL 80 (180)
Q Consensus 23 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~--~-----~~a~~~f~~i~~Ay~iL 80 (180)
.....+.|.+||+++..+..+|+++|+.+....|||+-.+ . ..+.+.++.|+.||..+
T Consensus 109 ~~~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 109 QLDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred cccchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3334799999999999999999999999999999998422 1 24677889999998753
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00089 Score=52.72 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=54.0
Q ss_pred chhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17599 28 DLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDEK-----AIETFHLLSKAIEVLLDKSARAAYDSVIR 94 (180)
Q Consensus 28 d~Y~iLgv~~~a--s~~eIkkayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~iL~dp~~R~~YD~~~~ 94 (180)
|++..+|.++.+ ..+.++..|+.+...+|||+....+. +...+..++.||.+|.||-.|+.|-..+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 456666766643 45568999999999999999765433 44679999999999999999999998776
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.54 E-value=0.036 Score=41.67 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=33.2
Q ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcC
Q psy17599 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLL 81 (180)
Q Consensus 28 d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~ 81 (180)
.-..||||++..+.++|.+.|..|-...+|+++++ .-.-..|..|.+.|.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~ 108 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLE 108 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHH
Confidence 44589999999999999999999999999998863 222344555555543
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=87.87 E-value=1.3 Score=28.57 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=24.3
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHH
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKAL 53 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~ 53 (180)
.+-|.+|||+++.+.+.|-.+|.....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999999777
No 74
>KOG1029|consensus
Probab=86.78 E-value=3.9 Score=39.50 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=7.9
Q ss_pred HHHHHHHHHhccccc
Q psy17599 143 QQEIDRLRKEGKYPL 157 (180)
Q Consensus 143 ~~ei~rlr~eg~r~~ 157 (180)
+.+|++-|++.+++.
T Consensus 380 QReiE~qrEEerkke 394 (1118)
T KOG1029|consen 380 QREIERQREEERKKE 394 (1118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555565555443
No 75
>KOG0724|consensus
Probab=79.58 E-value=2.2 Score=36.65 Aligned_cols=56 Identities=38% Similarity=0.449 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17599 38 DCSEQDIRSAYRKKALKCHPDKNPD----DEKAIETFHLLSKAIEVLLDKSARAAYDSVI 93 (180)
Q Consensus 38 ~as~~eIkkayr~l~~~~HPDk~~~----~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~~ 93 (180)
.++...|..+|+..++..||++... .-...+.|..|.+||.||++...|..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 3567788999999999999998741 1234567899999999999865555555544
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=78.15 E-value=5.6 Score=29.15 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCchHH----HHHHHHHHHHHHHcCC
Q psy17599 37 IDCSEQDIRSAYRKKALKCHPDKNPDDEKA----IETFHLLSKAIEVLLD 82 (180)
Q Consensus 37 ~~as~~eIkkayr~l~~~~HPDk~~~~~~a----~~~f~~i~~Ay~iL~d 82 (180)
...+..+++.+.|.+-+.+|||.....|.. .+-++.|+.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 345678899999999999999986655542 2335666655555554
No 77
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=72.33 E-value=10 Score=30.43 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcC
Q psy17599 36 TIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLL 81 (180)
Q Consensus 36 ~~~as~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~ 81 (180)
+++|+.+||..|+.++...|--| + ..-..|-.||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-----~---~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-----E---KSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-----H---HHHHHHHHHHHHHH
Confidence 57899999999999999998433 2 33455666666544
No 78
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=60.13 E-value=20 Score=31.28 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=45.5
Q ss_pred HHHHHhc---hhhhhhhcccCCCcchhhhcCCCCCC-CHHHHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHHHHHHcC
Q psy17599 7 NIVWSFP---AIPLSSIMADIKDLDLYGLLELTIDC-SEQDIRSAYRKKALKCHPDK-NPDDEKAIETFHLLSKAIEVLL 81 (180)
Q Consensus 7 ~~~~~~~---~~~~~~~~~~~~~~d~Y~iLgv~~~a-s~~eIkkayr~l~~~~HPDk-~~~~~~a~~~f~~i~~Ay~iL~ 81 (180)
.-+|.-+ ++..+|-..+....+||+.|||++.. +...|++.- ..+.+.-|-. +-++|.-......+..++..|.
T Consensus 227 ~kLW~RFFLlsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn-~~a~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 305 (351)
T CHL00185 227 ARLWCRFFLLSVFATMYLNDLQRSDFYAAIGLDARQFDMHVIRKTN-ESAARLFPVVLDVDNPKFFKYLDQCACANLKLI 305 (351)
T ss_pred HHHHHHHHHHHHHHHheehhcchHHHHHHhCCCHHHhhHHHHHHhh-HHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 4444433 45566777778889999999999854 555555544 4455556644 3445655555555555555443
No 79
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=58.74 E-value=24 Score=30.44 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=40.3
Q ss_pred hhhhhhhcccCCCcchhhhcCCCCCC-CHHHHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHHHHHHc
Q psy17599 14 AIPLSSIMADIKDLDLYGLLELTIDC-SEQDIRSAYRKKALKCHPDK-NPDDEKAIETFHLLSKAIEVL 80 (180)
Q Consensus 14 ~~~~~~~~~~~~~~d~Y~iLgv~~~a-s~~eIkkayr~l~~~~HPDk-~~~~~~a~~~f~~i~~Ay~iL 80 (180)
++..+|-..+....++|+.|||++.. +...|++. ...+...-|-. +-++|.-......+..+...|
T Consensus 221 sVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~T-n~~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 288 (323)
T cd01047 221 SVYATMYLNDHQRPDFYEALGLDTTEFDMHVIRET-NETAARVFPAVLDVDNPEFRRGLDRLVDLNLKL 288 (323)
T ss_pred HHHHhheeeccchHHHHHHhCCCHHHhhHHHHHHh-hHHHHhhCCeeecCCChHHHHHHHHHHHHHHHH
Confidence 45567777788889999999999864 44445554 44555566644 334555444444444444433
No 80
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=55.45 E-value=27 Score=30.56 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=43.5
Q ss_pred HHHHHhc---hhhhhhhcccCCCcchhhhcCCCCCC-CHHHHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHHHHHHc
Q psy17599 7 NIVWSFP---AIPLSSIMADIKDLDLYGLLELTIDC-SEQDIRSAYRKKALKCHPDK-NPDDEKAIETFHLLSKAIEVL 80 (180)
Q Consensus 7 ~~~~~~~---~~~~~~~~~~~~~~d~Y~iLgv~~~a-s~~eIkkayr~l~~~~HPDk-~~~~~~a~~~f~~i~~Ay~iL 80 (180)
.-+|.-+ ++..+|-..+....+||+.|||++.. +...|++. ...+...-|-. +-++|.-......+..+...|
T Consensus 231 ~kLW~RFFLlsVfaTmyl~d~~R~~Fy~alGlD~~~yD~~Vi~~T-ne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 308 (355)
T PRK13654 231 NRLWIRFFLLAVFATMYLRDHERPDFYEALGLDAREYDQEVIRKT-NETSARVFPVVLDVDDPRFYARLERCVENNEKL 308 (355)
T ss_pred HHHHHHHHHHHHHhheeeecccchHHHHHhCCCHHHhhHHHHHHh-hHHHHhhCCeeecCCChHHHHHHHHHHHHHHHH
Confidence 3444433 45566777788889999999999864 44445554 44555566644 334555444444444444443
No 81
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=54.33 E-value=30 Score=29.99 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=40.3
Q ss_pred hhhhhhhcccCCCcchhhhcCCCCC-CCHHHHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHHHHHHc
Q psy17599 14 AIPLSSIMADIKDLDLYGLLELTID-CSEQDIRSAYRKKALKCHPDK-NPDDEKAIETFHLLSKAIEVL 80 (180)
Q Consensus 14 ~~~~~~~~~~~~~~d~Y~iLgv~~~-as~~eIkkayr~l~~~~HPDk-~~~~~~a~~~f~~i~~Ay~iL 80 (180)
++..+|-..+....+||+.|||++. -+...|++.- ..+...-|-. +-++|.-......+..+...|
T Consensus 231 sVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn-e~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 298 (337)
T TIGR02029 231 SVYSTMYLRDHQRPGFYEALGLDATDFDLQVFRNTN-ETSGRIFPMTLNTEHPRFRRLLDRMAGYSEKI 298 (337)
T ss_pred HHHHHHhhhhcccHHHHHHhCCCHHHhhHHHHHHhh-HHHHhhCCeeecCCCHHHHHHHHHHHHHHHHH
Confidence 4556677778888999999999985 4555555554 4455555644 344565444444444444433
No 82
>KOG3442|consensus
Probab=54.21 E-value=19 Score=26.96 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=29.2
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q psy17599 30 YGLLELTIDCSEQDIRSAYRKKALKCHPDKNPD 62 (180)
Q Consensus 30 Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~ 62 (180)
-.||+|++..+.++|.+.|-.|-....|.|.++
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 469999999999999999999999888887753
No 83
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=53.49 E-value=65 Score=22.05 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=28.2
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNP 61 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~ 61 (180)
.|.-+++|++|.+++.+|+.+-++.++++.--..|
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 35567899999999999999998888887555444
No 84
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=48.01 E-value=43 Score=29.31 Aligned_cols=71 Identities=10% Similarity=0.161 Sum_probs=41.6
Q ss_pred HHHHHhc---hhhhhhhcccCCCcchhhhcCCCCC-CCHHHHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHHHHH
Q psy17599 7 NIVWSFP---AIPLSSIMADIKDLDLYGLLELTID-CSEQDIRSAYRKKALKCHPDK-NPDDEKAIETFHLLSKAIE 78 (180)
Q Consensus 7 ~~~~~~~---~~~~~~~~~~~~~~d~Y~iLgv~~~-as~~eIkkayr~l~~~~HPDk-~~~~~~a~~~f~~i~~Ay~ 78 (180)
.-+|.-+ ++..+|-..+....+||+.|||++. -+...|++.- ..+...-|-. +-++|.-......+..+..
T Consensus 227 ~kLW~RFFLLsVfaTMyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn-e~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~ 302 (357)
T PLN02508 227 AKLWSRFFCLSVYVTMYLNDHQRTAFYEGIGLNTKQFNMHVIIETN-RTTARIFPAVLDVENPEFKRKLDRMVVINQ 302 (357)
T ss_pred HHHHHHHHHHHHHHHheeeccchHHHHHHhCCCHHHhhHHHHHHhh-HHHHhhCCeeecCCCHHHHHHHHHHHHHHH
Confidence 4445443 4456677778888999999999985 4555555554 4455555644 3344543333444443333
No 85
>KOG0163|consensus
Probab=35.80 E-value=4.5e+02 Score=26.12 Aligned_cols=9 Identities=0% Similarity=-0.562 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q psy17599 159 PVLYVFRIN 167 (180)
Q Consensus 159 e~~~~~~~~ 167 (180)
+++++...+
T Consensus 1003 ~Eqer~D~~ 1011 (1259)
T KOG0163|consen 1003 LEQERRDHE 1011 (1259)
T ss_pred HHHHHHHHH
Confidence 444444433
No 86
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.18 E-value=3.9e+02 Score=26.01 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=7.9
Q ss_pred HHHHHHHHHcCC
Q psy17599 71 HLLSKAIEVLLD 82 (180)
Q Consensus 71 ~~i~~Ay~iL~d 82 (180)
.-|..|.+++++
T Consensus 497 ~ii~~A~~~~~~ 508 (771)
T TIGR01069 497 FIIEQAKTFYGE 508 (771)
T ss_pred HHHHHHHHHHHh
Confidence 456677777764
No 87
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.10 E-value=3.6e+02 Score=26.24 Aligned_cols=13 Identities=8% Similarity=0.337 Sum_probs=8.7
Q ss_pred HHHHHHHHHcCCH
Q psy17599 71 HLLSKAIEVLLDK 83 (180)
Q Consensus 71 ~~i~~Ay~iL~dp 83 (180)
.-|..|.++|++.
T Consensus 502 ~ii~~A~~~~~~~ 514 (782)
T PRK00409 502 NIIEEAKKLIGED 514 (782)
T ss_pred HHHHHHHHHHhhh
Confidence 4567777777654
No 88
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=33.50 E-value=42 Score=15.14 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHcC
Q psy17599 69 TFHLLSKAIEVLL 81 (180)
Q Consensus 69 ~f~~i~~Ay~iL~ 81 (180)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3667777777664
No 89
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=31.89 E-value=1.2e+02 Score=21.20 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=30.4
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17599 34 ELTIDCS-EQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYD 90 (180)
Q Consensus 34 gv~~~as-~~eIkkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD 90 (180)
|++|+++ ..+|-..|..++..++|. + .+.+..|...| +.||.-+..||
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~----~---~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG----D---PELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS----------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC----C---HHHHHHHHHHH--HcCHHHHhhcc
Confidence 5666544 334777777777777772 1 35777888888 78888888887
No 90
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=28.38 E-value=2.2e+02 Score=24.45 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=37.4
Q ss_pred CCcchhhhcCCCC-CCCHHHHHHHHHHHHHH-------hCCCCCCCc--h-HHHHHHHHHHHHHHHcCC
Q psy17599 25 KDLDLYGLLELTI-DCSEQDIRSAYRKKALK-------CHPDKNPDD--E-KAIETFHLLSKAIEVLLD 82 (180)
Q Consensus 25 ~~~d~Y~iLgv~~-~as~~eIkkayr~l~~~-------~HPDk~~~~--~-~a~~~f~~i~~Ay~iL~d 82 (180)
-..++++-||++. ..+.+++..-...++.+ .++|.+..- + .-.+.|..+..+|+.|++
T Consensus 80 ~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~ 148 (318)
T PF12725_consen 80 YRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAE 148 (318)
T ss_pred CCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 3567889999988 78888877666555433 344432110 1 235778888888888754
No 91
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=28.18 E-value=3.1e+02 Score=21.91 Aligned_cols=19 Identities=21% Similarity=0.664 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy17599 104 SKLDATRKKFKEDLERREK 122 (180)
Q Consensus 104 ~~~~~~r~~~~e~le~rE~ 122 (180)
..+...|++|.+++.+.-+
T Consensus 83 Ea~eaAR~RmQEE~dakA~ 101 (190)
T PF06936_consen 83 EAMEAARRRMQEELDAKAE 101 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665544
No 92
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=26.87 E-value=99 Score=19.67 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=20.1
Q ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q psy17599 27 LDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKN 60 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~ 60 (180)
--||+||+++. .+ ++=+..|-+ .++-||+..
T Consensus 11 nAFY~vl~~~n-Lt-eeQrn~yI~-~lKddPs~s 41 (54)
T PF02216_consen 11 NAFYEVLHMPN-LT-EEQRNGYIQ-SLKDDPSRS 41 (54)
T ss_dssp HHHHHHHCSTT-S--HHHHHHHHH-HHHH-GCCH
T ss_pred HHHHHHHcCCC-cC-HHHHHhHHH-HHhhChHHH
Confidence 35899999875 23 445666765 577888854
No 93
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=25.94 E-value=20 Score=23.48 Aligned_cols=28 Identities=18% Similarity=0.482 Sum_probs=19.0
Q ss_pred cchhhhcCCCCCCCHHHH-HHHHHHHHHHhCCC
Q psy17599 27 LDLYGLLELTIDCSEQDI-RSAYRKKALKCHPD 58 (180)
Q Consensus 27 ~d~Y~iLgv~~~as~~eI-kkayr~l~~~~HPD 58 (180)
.+++++||.++ +++ ...........|||
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpd 34 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPD 34 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHH
Confidence 47899999877 445 44566677789998
No 94
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=25.50 E-value=1.4e+02 Score=25.69 Aligned_cols=53 Identities=11% Similarity=0.248 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCC-------------c-------------hHHHHHHHHHHHHHHHcCCHHHHH
Q psy17599 35 LTIDCSEQDIRSAYRKKALKCHPDKNPD-------------D-------------EKAIETFHLLSKAIEVLLDKSARA 87 (180)
Q Consensus 35 v~~~as~~eIkkayr~l~~~~HPDk~~~-------------~-------------~~a~~~f~~i~~Ay~iL~dp~~R~ 87 (180)
++++.+.++|-+|.+-.-..+|||.+.. + ..+.-.++.+|..|..+-|=..|.
T Consensus 44 ~~~~~~~~~lw~Ak~l~~Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~~~ifwQw~NQS~Na~vNy~Nrn 122 (308)
T PF03820_consen 44 VPPGLTDDELWKAKKLYDSAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTPAVIFWQWVNQSYNAAVNYTNRN 122 (308)
T ss_pred CCCCCCHHHHHHHHHHhhcccCCCCCCccccccccccccccchHHHHHHhccCcchHHHHHHHHHHhHHHHHHhhhccC
Confidence 3445699999999999999999997321 0 123455789999998876554443
No 95
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=22.82 E-value=3.2e+02 Score=22.69 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=11.1
Q ss_pred cCCCCCCCHHHHHHHHHH
Q psy17599 33 LELTIDCSEQDIRSAYRK 50 (180)
Q Consensus 33 Lgv~~~as~~eIkkayr~ 50 (180)
||--|..-...+|..|..
T Consensus 53 LG~C~kiHd~~lk~~Ye~ 70 (254)
T PF03194_consen 53 LGPCPKIHDEALKAEYEK 70 (254)
T ss_pred cchhhhhcCHHHHHHHHh
Confidence 454444555677888876
No 96
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.73 E-value=2.4e+02 Score=19.61 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhcccc
Q psy17599 139 EEILQQEIDRLRKEGKYP 156 (180)
Q Consensus 139 ~~~~~~ei~rlr~eg~r~ 156 (180)
....+.++..||.++++-
T Consensus 52 l~~~E~eL~~LrkENrK~ 69 (85)
T PF15188_consen 52 LENNEKELKLLRKENRKS 69 (85)
T ss_pred hhccHHHHHHHHHhhhhh
Confidence 344567888888887653
No 97
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=22.71 E-value=90 Score=22.17 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=26.9
Q ss_pred CCCcchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q psy17599 24 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKN 60 (180)
Q Consensus 24 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~ 60 (180)
...-.||.||.++..+|..+|-+.=-..+.+-|||-+
T Consensus 8 vs~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 8 VSPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 3456899999999999888865554455666677753
No 98
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=22.69 E-value=2.6e+02 Score=21.60 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHH
Q psy17599 80 LLDKSARAAYDSVIRRKEEVK 100 (180)
Q Consensus 80 L~dp~~R~~YD~~~~~~~~~~ 100 (180)
++|+..-..+-..+.+....+
T Consensus 68 ~~d~~~~~kRr~mme~~E~~E 88 (154)
T PF14738_consen 68 LDDEASLEKRRKMMEEMEWKE 88 (154)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 455554444444444444333
No 99
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=22.42 E-value=1.3e+02 Score=16.49 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhCC
Q psy17599 41 EQDIRSAYRKKALKCHP 57 (180)
Q Consensus 41 ~~eIkkayr~l~~~~HP 57 (180)
.++.+.+.|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 46788999999999994
No 100
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=21.57 E-value=1e+02 Score=19.77 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH--HhCCCCCCCchHHHHHHHHHHHHHHHcCCHH
Q psy17599 41 EQDIRSAYRKKAL--KCHPDKNPDDEKAIETFHLLSKAIEVLLDKS 84 (180)
Q Consensus 41 ~~eIkkayr~l~~--~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~ 84 (180)
+.-+.+.+..++. --||... -|.+......+..||..|.||.
T Consensus 14 D~Rl~~Rl~~l~~~la~~p~~S--ip~a~~~wa~tkaAYRF~~N~~ 57 (58)
T PF14706_consen 14 DKRLTRRLVKLAESLAEKPGAS--IPQACQDWAETKAAYRFFRNPR 57 (58)
T ss_dssp SHHHHHHHHHHHHHHHHTTTS---HHHHTT-HHHHHHHHHHHT-TT
T ss_pred cchHHHHHHHHHHHHHHCCCCc--cchhccCHHHHHHHHHhhcCCC
Confidence 3446677777754 5577654 3777788999999999999873
No 101
>COG2879 Uncharacterized small protein [Function unknown]
Probab=21.55 E-value=1.6e+02 Score=19.48 Aligned_cols=15 Identities=47% Similarity=0.733 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCCCCC
Q psy17599 47 AYRKKALKCHPDKNP 61 (180)
Q Consensus 47 ayr~l~~~~HPDk~~ 61 (180)
.|-.-.+..|||+.+
T Consensus 27 nYVehmr~~hPd~p~ 41 (65)
T COG2879 27 NYVEHMRKKHPDKPP 41 (65)
T ss_pred HHHHHHHHhCcCCCc
Confidence 477788899999986
No 102
>PLN03086 PRLI-interacting factor K; Provisional
Probab=21.30 E-value=5.3e+02 Score=24.29 Aligned_cols=10 Identities=10% Similarity=-0.100 Sum_probs=4.4
Q ss_pred HHHHHHHccc
Q psy17599 166 INLWLISYQG 175 (180)
Q Consensus 166 ~~~~~~~~~~ 175 (180)
.+++|-+.+|
T Consensus 64 ~~~~~~~~~~ 73 (567)
T PLN03086 64 QQMQESLQAG 73 (567)
T ss_pred HHHHHHHHcC
Confidence 3344444444
No 103
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.70 E-value=7.9e+02 Score=23.93 Aligned_cols=6 Identities=33% Similarity=0.667 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy17599 146 IDRLRK 151 (180)
Q Consensus 146 i~rlr~ 151 (180)
|..|++
T Consensus 585 i~~lk~ 590 (771)
T TIGR01069 585 IRELKE 590 (771)
T ss_pred HHHHHh
Confidence 333443
No 104
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=20.70 E-value=1.5e+02 Score=24.00 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Q psy17599 70 FHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRL 149 (180)
Q Consensus 70 f~~i~~Ay~iL~dp~~R~~YD~~~~~~~~~~~~~~~~~~~r~~~~e~le~rE~~~~~~~~~~~~~~~~~~~~~~~ei~rl 149 (180)
......||+.++.+..-..|...++... |..+.+.|++=+.-.+ .-..++.+|.+|
T Consensus 89 ~~~~~eA~DLm~~e~Pse~YWk~lAE~R------------R~AL~eaL~ENe~Lh~------------~ie~~~eEi~~l 144 (200)
T PF07412_consen 89 EKVTIEAEDLMSSEGPSENYWKELAEER------------RKALEEALEENEKLHK------------EIEQKDEEIAKL 144 (200)
T ss_dssp ------CCCCC-SSSCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred ccCcccHHHHhhcCCChHHHHHHHHHHH------------HHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Confidence 4456678888887777788887775433 3345555554444332 223456788888
Q ss_pred HHhcccc--chHHHHHHHHHHHHHH
Q psy17599 150 RKEGKYP--LKPVLYVFRINLWLIS 172 (180)
Q Consensus 150 r~eg~r~--~~e~~~~~~~~~~~~~ 172 (180)
+++.... +.+.-+.|..-|+..+
T Consensus 145 k~en~~L~elae~~~~la~~ie~l~ 169 (200)
T PF07412_consen 145 KEENEELKELAEHVQYLAEVIERLT 169 (200)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777544 3344445555555444
No 105
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=20.64 E-value=2.5e+02 Score=18.06 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17599 46 SAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSV 92 (180)
Q Consensus 46 kayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~iL~dp~~R~~YD~~ 92 (180)
+..+.....-||+... .+....|...|..|++..+...++..
T Consensus 14 ~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls~~eK~~y~~~a 55 (72)
T cd01388 14 KRHRRKVLQEYPLKEN-----RAISKILGDRWKALSNEEKQPYYEEA 55 (72)
T ss_pred HHHHHHHHHHCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455566677898532 47788899999999987765544443
Done!