RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17599
(180 letters)
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 78.8 bits (195), Expect = 8e-20
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L ++ E++IR AY++ A+K HPD+N D++A F + +A EVL D RA
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 88 AYD 90
AYD
Sbjct: 64 AYD 66
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 77.4 bits (191), Expect = 3e-19
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
LY +L L + + DI+ +YRK ALK HPDKNPD+ +A + F ++ A +L D + R
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77
Query: 88 AYD 90
YD
Sbjct: 78 IYD 80
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 112
Score = 77.5 bits (191), Expect = 3e-19
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y LL S + I + ++ +AL+CHPDK+P++ KA+ETF L KA E+L ++ +RA
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 88 AYD 90
YD
Sbjct: 81 RYD 83
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 74.8 bits (184), Expect = 2e-18
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
LY LL + ++ I++AY ++ HPD+N +A E F +S+A VL + R
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 88 AYD 90
YD
Sbjct: 78 KYD 80
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 73.9 bits (182), Expect = 5e-18
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKAIEVLLDKSAR 86
Y +L++ S DI+ AYR+KAL+ HPDKNPD+ E A + F +++A EVL DK R
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 87 AAYD 90
YD
Sbjct: 63 EIYD 66
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ
domain, endoplasmic reticulum, oxidor; 1.84A {Mus
musculus}
Length = 210
Score = 76.8 bits (189), Expect = 6e-18
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
+ Y LL ++ S ++IR A++K ALK HPDKNP++ A F +++A EVL D+ R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 88 AYD 90
YD
Sbjct: 63 KYD 65
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 72.4 bits (178), Expect = 2e-17
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 18 SSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAI 77
S+ M K+ LY LL ++ +EQ+++ YRK ALK HPDK D E F +S+A
Sbjct: 1 SNAMV--KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAF 55
Query: 78 EVLLDKSARAAYD 90
E+L D R YD
Sbjct: 56 EILNDPQKREIYD 68
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 72.9 bits (179), Expect = 6e-17
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD------EKAIETFHLLSKAIEVLL 81
D Y +L + D++ Y+K L HPDK D E+ ++ F + +A ++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 82 DKSARAAYDS 91
++ + YD
Sbjct: 71 NEETKREYDL 80
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 70.4 bits (173), Expect = 9e-17
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L + + S+++I+ AY + A K HPD N DD KA E F L++A EVL D+ R
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 88 AYD 90
YD
Sbjct: 68 QYD 70
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 70.4 bits (173), Expect = 1e-16
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKAIEVLLDKSAR 86
+ Y +L + S +DI+ AYRK AL+ HPDKNPD+ E+A + F L+S+A EVL D R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 87 AAYD 90
+ YD
Sbjct: 70 SLYD 73
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 69.2 bits (170), Expect = 3e-16
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKAIEVLLDKSAR 86
D Y +L++ S + I+ AYRK ALK HPDKNP++ E+A F +++A EVL D R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 87 AAYD 90
YD
Sbjct: 70 DIYD 73
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 68.4 bits (168), Expect = 5e-16
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y L L S+++I+ AYR++AL+ HPDKN + A E F +++A +VL D R
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSDPRKRE 62
Query: 88 AYD 90
+D
Sbjct: 63 IFD 65
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 68.5 bits (168), Expect = 6e-16
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
Y +L + SE+ I+ A+ K A+K HPDKN + A F +++A E L D + R
Sbjct: 8 SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYETLSDANRRK 66
Query: 88 AYD 90
YD
Sbjct: 67 EYD 69
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 66.9 bits (164), Expect = 1e-15
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 18 SSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAI 77
S+ M K+ Y +L + D S+ +++ AYRK ALK HPDKNPD E F +S+A
Sbjct: 1 SNAMV--KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGA---EQFKQISQAY 55
Query: 78 EVLLDKSARAAYD 90
EVL D+ R YD
Sbjct: 56 EVLSDEKKRQIYD 68
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 72.1 bits (176), Expect = 2e-15
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 17 LSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKA 76
S + D + Y LL ++ S ++IR A++K ALK HPDKNP++ A F +++A
Sbjct: 11 SSGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRA 70
Query: 77 IEVLLDKSARAAYD 90
EVL D+ R YD
Sbjct: 71 YEVLKDEDLRKKYD 84
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 64.6 bits (158), Expect = 1e-14
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L ++ S++D++ AYR+ ALK HPDKN A E F + A VL + R
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG-ATEAFKAIGTAYAVLSNPEKRK 66
Query: 88 AYD 90
YD
Sbjct: 67 QYD 69
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 64.3 bits (157), Expect = 2e-14
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L ++ S+ DI+ AY+K A + HPDKN D A + F +SKA E+L ++ R
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG-AEDRFIQISKAYEILSNEEKRT 76
Query: 88 AYD 90
YD
Sbjct: 77 NYD 79
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 68.0 bits (167), Expect = 3e-14
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L + + I++AYR+ A K HPD + +++ A F L++A EVL D+ RA
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAEAWEVLKDEQRRA 87
Query: 88 AYD 90
YD
Sbjct: 88 EYD 90
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 63.7 bits (155), Expect = 6e-14
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 28 DLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSA 85
L LL L + +R AY KK + HPDK D+EK ++ + + D
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKMEDGVK 64
Query: 86 RAAYD 90
A
Sbjct: 65 YAHQP 69
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 62.8 bits (153), Expect = 9e-14
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 21 MADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD------EKAIETFHLLS 74
+ D Y +L + D++ Y+K L HPDK D E+ ++ F +
Sbjct: 10 LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEID 69
Query: 75 KAIEVLLDKSARAAYD 90
+A ++L ++ + YD
Sbjct: 70 QAWKILGNEETKKKYD 85
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 62.4 bits (152), Expect = 1e-13
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD-EKAIETFHLLSKAIEVLLDKSAR 86
++ ++E E + + R+ LK HPDKNP++ + A E F L I L +
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73
Query: 87 AAYD 90
A D
Sbjct: 74 AFLD 77
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 62.4 bits (152), Expect = 2e-13
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 28 DLYGLLELTID-CSEQDIRSAYRKKALKCHPDKNPDDEK---AIETFHLLSKAIEVLLDK 83
+ Y +LE+ + +Q + AYR A K HPD+ + E+ A E F +++ A E L D
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75
Query: 84 SARAAYD 90
A+ YD
Sbjct: 76 EAKTNYD 82
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 61.7 bits (150), Expect = 2e-13
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D + +L + S ++ AYRK A+ HPDK + + F + A LL
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-SEDAFKAVVNARTALLKNIKSG 86
Query: 88 AYD 90
Sbjct: 87 PSS 89
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 63.0 bits (153), Expect = 4e-13
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 28 DLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSA 85
L LL L + +R AY KK + HPDK D+EK ++ + + D
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKMEDGVK 67
Query: 86 RAAYD 90
A
Sbjct: 68 YAHQP 72
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 58.5 bits (142), Expect = 8e-11
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 25 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDE---KAIETFHLLSKAIEVLL 81
+ D Y +L + + +Q+I AYRK AL+ HPD ++E KA + F ++ A EVL
Sbjct: 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439
Query: 82 DKSARAAYDS 91
D R +D
Sbjct: 440 DPEMRKKFDD 449
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 50.3 bits (120), Expect = 3e-09
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 20 IMADIKDLDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAI 77
+++ L LL+L ++ AY++++L HPDK L+
Sbjct: 4 VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHAL----MQELNSLW 59
Query: 78 EVLLDKSARAAYD 90
+ +
Sbjct: 60 GTFKTEVYNLRMN 72
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 51.9 bits (124), Expect = 5e-09
Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 12/135 (8%)
Query: 25 KDLDLYGLLEL--TIDCSEQDIRSAYRKKALKCHPDKNPDD-----EKAIETFHLLSKAI 77
++ + L L + + S +R + HPD A++ ++ A
Sbjct: 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAY 61
Query: 78 EVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKS 137
+ L D RA Y ++ E + + D E +E RE+ ++
Sbjct: 62 QTLKDPLRRAEYLLSLQGIEMNAEQQTLQDP--MFLMEQMELREELESVTACAD---PEA 116
Query: 138 EEEILQQEIDRLRKE 152
++ +++
Sbjct: 117 ALVAFDTKVTAMQRH 131
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 50.7 bits (121), Expect = 2e-08
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 13/133 (9%)
Query: 27 LDLYGLLEL--TIDCSEQDIRSAYRKKALKCHPDKNPDD-----EKAIETFHLLSKAIEV 79
+D + L L Q + ++ + HPDK A++ +++A +
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 80 LLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEE 139
L RA Y + + +++ D E LE RE+ E E+ K +++
Sbjct: 61 LRHPLMRAEYLLSLHGFDLASEQHTVRDT--AFLMEQLELREELDEIEQAK----DEARL 114
Query: 140 EILQQEIDRLRKE 152
E + + ++
Sbjct: 115 ESFIKRVKKMFDT 127
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 49.1 bits (116), Expect = 8e-08
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 30 YGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEK---AIETFHLLSKAIEVLLDKSAR 86
+ + + + + ++ YRK L HPDK A F L+ A ++ +
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
Query: 87 AAY 89
Y
Sbjct: 180 PLY 182
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 45.0 bits (106), Expect = 2e-06
Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 38 DCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRR-- 95
+ +R YR+ + HPD E L++A L D R+ Y + R
Sbjct: 29 TIDQSRLRKEYRQLQAQHHPDMAQQGS---EQSSTLNQAYHTLKDPLRRSQYMLKLLRNI 85
Query: 96 ---KEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKE 152
+E+ + D + L+ ++ ++ + +++ ++L+++ ++
Sbjct: 86 DLTQEQTSNEVTTSDPQ--LLLKVLDIHDELSQMD-------DEAGVKLLEKQNKERIQD 136
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 42.4 bits (99), Expect = 2e-05
Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 16/135 (11%)
Query: 25 KDLDLYGLLEL--TIDCSEQDIRSAYRKKALKCHPDKNPDD-----EKAIETFHLLSKAI 77
D + L++ + ++ Y++ HPD + + + L++ A
Sbjct: 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY 100
Query: 78 EVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKS 137
+ LL +R Y + E + + ++D E +E EK AE E +++
Sbjct: 101 KTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQF--LIEIMEINEKLAEAE-------SEA 151
Query: 138 EEEILQQEIDRLRKE 152
+ ++ + +KE
Sbjct: 152 AMKEIESIVKAKQKE 166
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 41.7 bits (97), Expect = 3e-05
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 92 VIRR-KEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGY--------KVNKSEEEIL 142
IR+ +EE + R +LDA K +++ + K+ E + N+ ++
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
Query: 143 QQEID 147
Q+ D
Sbjct: 146 YQQPD 150
Score = 27.4 bits (60), Expect = 2.0
Identities = 11/61 (18%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 94 RRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEG 153
+E IR K R++ ++ L+ E +A ++ + K+++++ +E ++ + E
Sbjct: 80 LTQEPESIR--KW---REEQRKRLQ--ELDAASKVMEQEWREKAKKDL--EEWNQRQSEQ 130
Query: 154 K 154
Sbjct: 131 V 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 5e-05
Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 32/149 (21%)
Query: 24 IKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDK 83
+ + D + ++ +S K+ + H + D L LL K
Sbjct: 30 VDNFDCKDVQDMP--------KSILSKEEID-HIIMSKDAVSGT---LRL---FWTLLSK 74
Query: 84 SARAAY---DSVIRR-----KEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVN 135
+ V+R +K + + + E +R +N+ + Y V+
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVS 132
Query: 136 KSEEEILQQEIDRLRKEGKYPLKPVLYVF 164
+ Q +LR+ L+P V
Sbjct: 133 R------LQPYLKLRQ-ALLELRPAKNVL 154
Score = 34.4 bits (78), Expect = 0.017
Identities = 23/199 (11%), Positives = 51/199 (25%), Gaps = 43/199 (21%)
Query: 20 IMADIKD---LDLYGL----LELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHL 72
++ ++++ + + L L T D SA + E L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSL 306
Query: 73 LSKAIEVLLDKSARAAYD------SVI--RRKEEV-------KIRNSKLDATRKKFKEDL 117
L K ++ R S+I ++ + + KL + L
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 118 ERREKEAENERYKGYKV----------------NKSEEEILQQEIDRLRKEGKYPLKPVL 161
E E + + V + + +++L K +P
Sbjct: 367 EPAEYR---KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 162 YVFRINLWLISYQGRCSRR 180
I + + +
Sbjct: 424 STISIPSIYLELKVKLENE 442
Score = 28.7 bits (63), Expect = 1.1
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 76 AIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVN 135
A++V L + D I + ++N T + + L + R
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 136 KSEEEILQQEIDRLRKEGKYPLKPVLYVFRINLW 169
K +Q E+ RL K Y L V N+
Sbjct: 224 KLRIHSIQAELRRLLKSKPYE--NCLLVLL-NVQ 254
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 38.9 bits (91), Expect = 5e-05
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 40 SEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSAR 86
+++ ++ +RK L HPDK A + +++A + L +
Sbjct: 28 TKKKLKEVHRKIMLANHPDKGGSPFLATK----INEAKDFLEKRGIS 70
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 38.4 bits (89), Expect = 1e-04
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 33 LELTIDCSEQDIRSAYRKKALKCHPDKNPDDEK---AIETFHLLSKAIEVLLDK 83
+ + + + ++ YRK L HP K A F L+ A ++
Sbjct: 39 VGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 3e-04
Identities = 37/202 (18%), Positives = 58/202 (28%), Gaps = 69/202 (34%)
Query: 22 ADIKDLDLYGL----------LELTI---DCSEQDIRSAYRKKALKCHPDKNPDDEKAIE 68
AD D YG + LTI + IR Y + D EK +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 69 ---------TFH-----------------LLSKAI-EVLLDK-----------------S 84
TF L+ KA E L K +
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 85 ARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKS------E 138
A A+ V+ + V ++ R + R+ E Y +N
Sbjct: 1769 ALASLADVMSIESLV-----EVVFYRGMTMQVAVPRD-ELGRSNYGMIAINPGRVAASFS 1822
Query: 139 EEILQQEIDRLRKEGKYPLKPV 160
+E LQ ++R+ K + ++ V
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIV 1844
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN
auxilin-like J-domain containing protein, JAC1,
chloroplast accumulation response; 1.80A {Arabidopsis
thaliana}
Length = 106
Score = 36.5 bits (84), Expect = 8e-04
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 33 LELTIDCSEQDIRSAYRKKALKCHPDKNPDD-------EKAIETFHLLSKA 76
+ L +R +Y++ L HPDK A + F LL +A
Sbjct: 46 VPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEA 96
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 32.4 bits (73), Expect = 0.062
Identities = 13/80 (16%), Positives = 29/80 (36%)
Query: 95 RKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGK 154
R EV+ K+ A + + + E ++ E E+ + DR+ +
Sbjct: 114 RGIEVESFIIKVPADHELRMLKVPYIKSMENIEGGIQLELEVGEAEMKNRVPDRILTLLE 173
Query: 155 YPLKPVLYVFRINLWLISYQ 174
++ Y + W + +Q
Sbjct: 174 EKIEAAQYGAKAEHWNLLWQ 193
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 31.0 bits (69), Expect = 0.15
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 90 DSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGY--------KVNKSEEEI 141
+S+ + +EE + R +LDA K +++ + K+ E + N+ ++
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
Query: 142 LQQEID 147
Q+ D
Sbjct: 160 FYQQPD 165
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 0.23
Identities = 12/73 (16%), Positives = 17/73 (23%), Gaps = 34/73 (46%)
Query: 41 EQDIRSAYRKKA----------------------LKCHPDKNPDDEKAIETFHLLSKAIE 78
+D + Y K K H + E+
Sbjct: 1467 TEDRYNEYVAKVSAREKSAYKFFHNGMIYNKLFVSKEHAPYTDELEED------------ 1514
Query: 79 VLLDKSARAAYDS 91
V LD AR + D
Sbjct: 1515 VYLDPLARVSKDK 1527
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.27
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 96 KEEVKIRNSKLDATRKKFKED 116
K+ +K KL A+ K + +D
Sbjct: 19 KQALK----KLQASLKLYADD 35
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A,
confirmed by transcript...; lipid transport; HET: CSX;
1.80A {Caenorhabditis elegans}
Length = 140
Score = 28.1 bits (62), Expect = 1.00
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
Query: 65 KAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEA 124
+ F + I+ + K + E K R L ++ + L
Sbjct: 40 QKHSCFSQCGEMIDEVSKKHP-ELGKRLATVLEGNKKRLDGLSPAAVEYAKKLIHMVTTT 98
Query: 125 ENERYKGYKVNKSEEEILQQEIDRLRKEGKYPLK 158
G ++ ++ + L QE L E + L+
Sbjct: 99 LCSLTVGKPIDDADAKRLHQEFQSLSSEDQAALR 132
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin
ligase complex, ubiquitin-conjugating enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 58
Score = 26.4 bits (58), Expect = 1.2
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 4 SMCNIVWS-FPAIPLSSIMADIKDLDLYGLLELTID 38
+M + + FP +P ++ DL L +E+T D
Sbjct: 15 AMAHQIQEMFPQVPYHLVLQ---DLQLTRSVEITTD 47
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6;
1.60A {Homo sapiens}
Length = 58
Score = 26.5 bits (58), Expect = 1.4
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 2 FSSMCNIVWS-FPAIPLSSIMADIKDLDLYGLLELTID 38
++M + + FP +P ++ DL L +E+T D
Sbjct: 17 LNAMAHQIQEMFPQVPYHLVLQ---DLQLTRSVEITTD 51
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 27.6 bits (62), Expect = 2.7
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 101 IRNSKLDATRKKFK----EDLERREKEAENERYK 130
+ A +F+ EDL++R E K
Sbjct: 165 CQQGN--AEIVRFRHNSVEDLDKRLGRLPKEPAK 196
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 27.6 bits (60), Expect = 2.9
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 94 RRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEE-EILQQEIDRLRKE 152
+E +K K++ R + ++ ER E+ + K +E I++ EI L+ +
Sbjct: 523 SYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582
Score = 26.5 bits (57), Expect = 6.5
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 64 EKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKE 123
+ +T K IEV K A +A S E + ++ + ++E L++ ++
Sbjct: 476 LQTDQTLTEKEKEIEVERVK-AESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 534
Query: 124 AENERYKGYKVNKSEEEILQQEIDRLRKEGK 154
EN+R + K + + QE ++L KEG
Sbjct: 535 MENDRVQLLKEQERTLALKLQEQEQLLKEGF 565
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 27.2 bits (61), Expect = 3.2
Identities = 4/34 (11%), Positives = 10/34 (29%), Gaps = 6/34 (17%)
Query: 101 IRNSKLDATRKKFK----EDLERREKEAENERYK 130
I+ + ++ F+ L + K
Sbjct: 149 IKRNA--GPKRIFRHNDVAHLRELIAADDPAAPK 180
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.4 bits (61), Expect = 3.5
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 94 RRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEI--LQQEIDRLRK 151
+ ++I S + E L E+EA+N +V +EEI L++E+ + +
Sbjct: 949 EKMNNLEITYSTETEKLRSDVERLRMSEEEAKN---ATNRVLSLQEEIAKLRKELHQTQT 1005
Query: 152 EGK 154
E K
Sbjct: 1006 EKK 1008
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 27.2 bits (60), Expect = 3.9
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 78 EVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKS 137
E++ K + + EEV + + ++ + K + K+
Sbjct: 109 ELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYN----KILTE 164
Query: 138 EEEILQQEIDRLRKE 152
E+ +++ L+KE
Sbjct: 165 EDLQMRRLATALQKE 179
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 26.6 bits (59), Expect = 4.3
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 68 ETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERR-EKEAEN 126
+ A ++ + +K+ KL K+++ E + ++E
Sbjct: 245 GALKFFRVQLPKRYRAEENA--RRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPM 302
Query: 127 ERYK 130
+RYK
Sbjct: 303 DRYK 306
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium
leguminosarum BV} PDB: 2qlx_A*
Length = 144
Score = 26.2 bits (57), Expect = 5.0
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 19 SIMADIKDLDLYGLLELTIDCSEQDIRS--------AYRKKALKCHPDKNPDDEKAIETF 70
SI D + L+G+L D + + A+ + +PD +P + F
Sbjct: 82 SIHLDRETNTLFGVLTRPKDHTMASLPDHPVMKKWWAHMADIMATNPDNSPVQSDLVTLF 141
Query: 71 HL 72
H+
Sbjct: 142 HM 143
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 26.6 bits (59), Expect = 5.2
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 133 KVNKSEEEILQQEIDRLRKEGKYP---------LKPVLYVFRINLWLI 171
V EEE ++QEI+ L+K + +K LWL+
Sbjct: 58 DVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLV 105
>1j6r_A Methionine synthase; structural genomics, TM0269, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 2.30A {Thermotoga maritima} SCOP:
d.173.1.2
Length = 214
Score = 26.4 bits (58), Expect = 5.3
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 128 RYKGYKVNKSEEEILQQEIDRLRKEGKYPLKPVLYVFRI 166
G+ + E ++ ++R +E KPV ++R
Sbjct: 32 AKLGFGGAEEIPEEFRKTVNRAYEELLDAAKPV-VLWRD 69
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 25.6 bits (56), Expect = 6.2
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 113 FKEDLERREKEAENERYKGYK-VNKSEEEILQQEIDRLRKE 152
F + R K + L + DRL +
Sbjct: 93 FVGREQERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERM 133
>2fo1_D Protein LAG-3; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: a.137.14.1
Length = 85
Score = 25.0 bits (53), Expect = 7.7
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 60 NPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLER 119
NP+DE I + E+ +S A + R E + + + ++ ED ER
Sbjct: 3 NPEDEPTIGDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAVTAHLFNRYTEDEER 62
Query: 120 REKEAENER 128
+ E + +
Sbjct: 63 KRVEQQKNK 71
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 25.6 bits (56), Expect = 8.1
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 112 KFKEDLERREKEAENERYKGYK-VNKSEEEILQQEIDRLRKE 152
F ++++++ K + L + DRL +
Sbjct: 119 WFVGQEQQQQQQFVRHSEKAAEEAYTRTTRALHERFDRLERM 160
>3lfx_A Uncharacterized protein; CAS1, DNAse, prokaryotic immune system,
structural genomics, protein structure initiative; 2.70A
{Thermotoga maritima}
Length = 319
Score = 25.9 bits (57), Expect = 8.1
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 107 DATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRK 151
D + F ++ E+ +E + V S +++ E+ +L K
Sbjct: 265 DEGKSLFVKNYEQALRETVFHKKLNRYV--SMRSLIKMELHKLEK 307
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization,
four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo
sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Length = 213
Score = 25.5 bits (55), Expect = 8.6
Identities = 17/103 (16%), Positives = 43/103 (41%)
Query: 25 KDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKS 84
D++ Y + + + + ++ K+ L PD+ D + ++T ++ AI+ LLD
Sbjct: 79 DDVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDTV 138
Query: 85 ARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENE 127
+ + ++ + + K F + L+ K+ +
Sbjct: 139 NNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAI 181
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase,
chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1
d.241.2.1 d.26.1.1 PDB: 1l1p_A
Length = 392
Score = 25.7 bits (57), Expect = 9.2
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 106 LDATRKKFKEDLERREKEAENERYKG------YKVNKSE--EEILQQEIDRLRKE 152
+DA + + ++++ER K+A R K K N+ + ++ QEI+ LR++
Sbjct: 266 VDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVLRQQ 320
>3tzg_A Hypothetical protein BVU_2266; beta barrel, structural genomics,
joint center for structura genomics, JCSG, protein
structure initiative; 2.80A {Bacteroides vulgatus}
Length = 252
Score = 25.8 bits (56), Expect = 9.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 120 REKEAENERYKGYKVNKSEEEILQQEIDRLRKEGKYPLKPVLY 162
+EK+A+ K + EE++L+ E DR K KY PV Y
Sbjct: 2 KEKKADTYVTKVTDLTGEEEQVLKLEYDRDGKIIKYGDTPVRY 44
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 26.0 bits (57), Expect = 9.5
Identities = 12/65 (18%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 88 AYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEID 147
A + EE+++R + ++ ++E R +E E + ++E++ +QQ++
Sbjct: 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS----QQLQAEKKKMQQQML 958
Query: 148 RLRKE 152
L ++
Sbjct: 959 DLEEQ 963
>2yzs_A Putative uncharacterized protein; uncharacterized conserved
protein, structural genomics, unknown function, NPPSFA;
2.00A {Aquifex aeolicus}
Length = 315
Score = 25.9 bits (57), Expect = 9.7
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 107 DATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRK----EGKYP 156
+ RK F + + KV S +++ E+ +L K E Y
Sbjct: 256 EIGRKVFLKAFNELLETTIFYPKLNRKV--SHRTLIKLELYKLIKHLLEEEVYL 307
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.386
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,799,645
Number of extensions: 163008
Number of successful extensions: 652
Number of sequences better than 10.0: 1
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 138
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)