RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17599
(180 letters)
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 56.6 bits (136), Expect = 6e-12
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y +L ++ E++IR AY++ A+K HPD+N D++A F + +A EVL D RA
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 88 AYD 90
AYD
Sbjct: 64 AYD 66
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 52.8 bits (126), Expect = 2e-10
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 18 SSIMADIKDL--DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIE------T 69
SS MA + L D Y +L + D++ Y+K L HPDK D A
Sbjct: 5 SSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQK 64
Query: 70 FHLLSKAIEVLLDKSARAAYD 90
F + +A ++L ++ + YD
Sbjct: 65 FIEIDQAWKILGNEETKKKYD 85
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 51.5 bits (123), Expect = 7e-10
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD---EKAIETFHLLSKAIEVLLDKS 84
+ + + + + ++ YRK L HPDK + A F L+ A ++
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93
Query: 85 ARAAY 89
+ Y
Sbjct: 94 QKPLY 98
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 50.1 bits (119), Expect = 1e-09
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARA 87
D Y L L S+++I+ AYR++AL+ HPDKN + A E F +++A +VL D R
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 88 AYD 90
+D
Sbjct: 63 IFD 65
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 48.1 bits (114), Expect = 8e-09
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 27 LDLYGLLELTIDCS--EQDIRSAYRKKALKCHPDKNPDDEKA-----IETFHLLSKAIEV 79
+D + L L Q + ++ + HPDK +A ++ +++A +
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 80 LLDKSARAAYD 90
L RA Y
Sbjct: 61 LRHPLMRAEYL 71
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 46.9 bits (111), Expect = 3e-08
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 17 LSSIMADIKDLDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLS 74
+ +++ L LL+L ++ AY++++L HPDK L+
Sbjct: 1 MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHAL----MQELN 56
Query: 75 KAIEVLLDKSARAAYDS 91
+ +
Sbjct: 57 SLWGTFKTEVYNLRMNL 73
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 45.4 bits (107), Expect = 1e-07
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 28 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDEKAI-ETFHLLSKAIEVLLDKSAR 86
++ ++E E + + R+ LK HPDKNP++ E F L I L ++
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76
Query: 87 AAYDSVIRRK 96
R+
Sbjct: 77 DQNADRASRR 86
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 41.3 bits (96), Expect = 7e-06
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 25 KDLDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLD 82
+ L L LL L + +R AY KK + HPDK D+EK ++ + + D
Sbjct: 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKMED 61
Query: 83 KSARAAYDSVIRRKEEVKIRNSKLDATRKKFK----EDLERREK 122
A + +I D + + E+L E+
Sbjct: 62 GVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEE 105
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 26.6 bits (58), Expect = 1.6
Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 1/115 (0%)
Query: 39 CSEQDIRSAYRKKALKCHPDKNPDDEKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE 98
+ L + + E+ +K + + K+ + +E
Sbjct: 185 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 244
Query: 99 VKIRNSKLDATRKKFKEDLERREKEAENERYKGYK-VNKSEEEILQQEIDRLRKE 152
+K K++ R + ++ ER E+ + K + E I++ EI L+ +
Sbjct: 245 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
>d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans
[TaxId: 162425]}
Length = 519
Score = 26.5 bits (58), Expect = 2.4
Identities = 5/41 (12%), Positives = 22/41 (53%)
Query: 104 SKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQ 144
S ++ +++ +++ + ++ R++ K + E+I+ +
Sbjct: 1 SYIEEEDQRYWDEVAAVKNWWKDSRWRYTKRPFTAEQIVAK 41
>d1xqba_ e.56.1.1 (A:) Hypothetical protein HI0510 {Haemophilus
influenzae [TaxId: 727]}
Length = 231
Score = 25.7 bits (56), Expect = 3.4
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 32 LLELTIDCSEQDIRSAYRKK 51
L EQD R AY++
Sbjct: 183 LSRFIRQVLEQDPRPAYQQG 202
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.5 bits (55), Expect = 4.5
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 133 KVNKSEEEILQQEIDRLRKEGKYPLKPVLYVFRINLWLISY 173
K ++E + + +E+ +R + K Y + + + +
Sbjct: 16 KSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLF 56
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 2 [TaxId: 11709]}
Length = 427
Score = 24.9 bits (54), Expect = 7.9
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 130 KGYKVNKSEEEILQQEIDRLRKEGK 154
+ + + K + E L++ +++ KEG+
Sbjct: 20 RQWPLTKEKIEALKEICEKMEKEGQ 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.386
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 691,371
Number of extensions: 32808
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 47
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)