BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy176
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
ME+ K VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+
Sbjct: 1 MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60
Query: 98 DNYS 101
DN S
Sbjct: 61 DNCS 64
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
ME+ K VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+
Sbjct: 1 MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60
Query: 98 DNYS 101
DN S
Sbjct: 61 DNCS 64
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
ME+ K VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+
Sbjct: 1 MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60
Query: 98 DNYS 101
DN S
Sbjct: 61 DNCS 64
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
+ + VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+DN
Sbjct: 2 DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 61
Query: 100 YS 101
S
Sbjct: 62 CS 63
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
+ + VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+DN
Sbjct: 2 DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 61
Query: 100 YS 101
S
Sbjct: 62 CS 63
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
+ + VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+DN
Sbjct: 2 DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 61
Query: 100 YS 101
S
Sbjct: 62 CS 63
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
+ + VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+DN
Sbjct: 2 DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 61
Query: 100 YS 101
S
Sbjct: 62 CS 63
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
+ + VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+DN
Sbjct: 2 DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 61
Query: 100 YS 101
S
Sbjct: 62 CS 63
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 60.5 bits (145), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS 101
+ VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+DN S
Sbjct: 2 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS 61
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 60.5 bits (145), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS 101
+ VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+DN S
Sbjct: 1 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS 60
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS 101
VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+DN S
Sbjct: 16 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS 73
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 55.8 bits (133), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS 101
VW P P DGF +G I+ G D +T++PL+ K +++V+ AEE KDV+DN S
Sbjct: 16 VWAPHPTDGFQVGNIVRRGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS 73
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In
The Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTVQ 69
+ WVPDP GFV I DEVTV+
Sbjct: 32 KNCWVPDPDFGFVGAEIQSTKGDEVTVK 59
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of
This Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of
This Allosteric Motor
Length = 840
Score = 28.5 bits (62), Expect = 0.96, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTVQ 69
+ WVPDP +GF I +E+TV+
Sbjct: 32 KNCWVPDPKEGFASAEIQSSKGEEITVK 59
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTVQ 69
+ WVPDP +GF I +E+TV+
Sbjct: 32 KNCWVPDPKEGFASAEIQSSKGEEITVK 59
>pdb|2JES|A Chain A, Portal Protein From Bacteriophage Spp1
pdb|2JES|C Chain C, Portal Protein From Bacteriophage Spp1
pdb|2JES|E Chain E, Portal Protein From Bacteriophage Spp1
pdb|2JES|G Chain G, Portal Protein From Bacteriophage Spp1
pdb|2JES|I Chain I, Portal Protein From Bacteriophage Spp1
pdb|2JES|K Chain K, Portal Protein From Bacteriophage Spp1
pdb|2JES|M Chain M, Portal Protein From Bacteriophage Spp1
pdb|2JES|O Chain O, Portal Protein From Bacteriophage Spp1
pdb|2JES|Q Chain Q, Portal Protein From Bacteriophage Spp1
pdb|2JES|S Chain S, Portal Protein From Bacteriophage Spp1
pdb|2JES|U Chain U, Portal Protein From Bacteriophage Spp1
pdb|2JES|W Chain W, Portal Protein From Bacteriophage Spp1
pdb|2JES|Y Chain Y, Portal Protein From Bacteriophage Spp1
Length = 503
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 2 DEKMENNLTWYTSLI------SISVVVGAVDFESVVYKFKPYLMENQKVWVPDPADGFVL 55
+E+M ++L +Y LI + S + DF+ +VY K Y EN K + + V+
Sbjct: 250 NEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENPKEFTANLRYHSVI 309
Query: 56 GRILDLGMDEVTVQ-PLDSKKPKAAFSLDRV 85
D G+D + + P+DS AA L+R+
Sbjct: 310 KVSGDGGVDTLRAEIPVDS----AAKELERI 336
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 24 AVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQ 69
AVD + ++ + + WVPD +GF I DE+TV+
Sbjct: 9 AVDRKKLMKEQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVK 54
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility
And Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel
Nucleotide Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 24 AVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQ 69
AVD + ++ + + WVPD +GF I DE+TV+
Sbjct: 14 AVDRKKLMKEQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVK 59
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 24 AVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQ 69
AVD + ++ + + WVPD +GF I DE+TV+
Sbjct: 14 AVDRKKLMKEQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVK 59
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With
Mgadp:vanadate-Transition State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With
Mgadp:vanadate-Transition State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 24 AVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQ 69
AVD + ++ + + WVPD +GF I DE+TV+
Sbjct: 10 AVDRKKLMKEQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVK 55
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 24 AVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQ 69
AVD + ++ + + WVPD +GF I DE+TV+
Sbjct: 14 AVDRKKLMKEQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVK 59
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of
Chick Smooth Muscle Myosin With Regulatory Light Chain
In Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of
Chick Smooth Muscle Myosin With Regulatory Light Chain
In Phosphorylated State
Length = 909
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDD 98
VWVP GF I + DEVTV+ L K S D + V+D
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVE-LQENGKKVTLSKDDIQKMNPPKFSKVED 87
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDD 98
VWVP GF I + DEVTV+ L K S D + V+D
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVE-LQENGKKVTLSKDDIQKMNPPKFSKVED 87
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDD 98
VWVP GF I + DEVTV+ L K S D + V+D
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVE-LQENGKKVTLSKDDIQKMNPPKFSKVED 87
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking
To Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDD 98
VWVP GF I + DEVTV+ L K S D + V+D
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVE-LQENGKKVTLSKDDIQKMNPPKFSKVED 87
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking
To Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDD 98
VWVP GF I + DEVTV+ L K S D + V+D
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVE-LQENGKKVTLSKDDIQKMNPPKFSKVED 87
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C
Alphas Provided For Regulatory Light Chain. Only
Backbone Atoms Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C
Alphas Provided For Regulatory Light Chain. Only
Backbone Atoms Provided For S2 Fragment
Length = 1184
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDD 98
VWVP GF I + DEVTV+ L K S D + V+D
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVE-LQENGKKVTLSKDDIQKMNPPKFSKVED 87
>pdb|2LEM|A Chain A, Monomeric Mouse Apoai(1-216)
Length = 216
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 26 DFESVVYKFKPYLMENQKVWVPD 48
D E V K +PYL E QK W D
Sbjct: 88 DLEEVKQKVQPYLDEFQKKWKED 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,152,039
Number of Sequences: 62578
Number of extensions: 117006
Number of successful extensions: 175
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 31
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)