BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy176
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9I8D1|MYO6_CHICK Unconventional myosin-VI OS=Gallus gallus GN=MYO6 PE=1 SV=1
Length = 1276
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
ME+ K VW P P DGF +G I+D+G D +T++PL+ K ++++V+ AEE KDV+
Sbjct: 1 MEDGKPVWAPHPTDGFQMGMIVDIGTDYLTIEPLNQKGKTFQAAINQVFPAEEDSKKDVE 60
Query: 98 DNYS 101
DN S
Sbjct: 61 DNCS 64
>sp|Q64331|MYO6_MOUSE Unconventional myosin-VI OS=Mus musculus GN=Myo6 PE=1 SV=1
Length = 1265
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
ME+ K VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+
Sbjct: 1 MEDGKPVWAPHPTDGFQMGNIVDIGPDSLTIEPLNQKGKTFGALINQVFPAEEDSKKDVE 60
Query: 98 DNYS 101
DN S
Sbjct: 61 DNCS 64
>sp|Q9UM54|MYO6_HUMAN Unconventional myosin-VI OS=Homo sapiens GN=MYO6 PE=1 SV=4
Length = 1294
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
ME+ K VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+
Sbjct: 1 MEDGKPVWAPHPTDGFQMGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60
Query: 98 DNYS 101
DN S
Sbjct: 61 DNCS 64
>sp|Q29122|MYO6_PIG Unconventional myosin-VI OS=Sus scrofa GN=MYO6 PE=1 SV=1
Length = 1254
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
ME+ K VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+
Sbjct: 1 MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60
Query: 98 DNYS 101
DN S
Sbjct: 61 DNCS 64
>sp|Q01989|MYS9_DROME Myosin heavy chain 95F OS=Drosophila melanogaster GN=jar PE=2
SV=4
Length = 1253
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
L + Q VWV D A+G++ GRI ++G E V P D K PK D ++++ + +D D
Sbjct: 2 LEDTQLVWVRDAAEGYIQGRITEIGAKEFEVTPTDRKYPKRTCHFDDIHSSCD-GPQDHD 60
Query: 98 DN 99
DN
Sbjct: 61 DN 62
>sp|P02566|MYO4_CAEEL Myosin-4 OS=Caenorhabditis elegans GN=unc-54 PE=4 SV=1
Length = 1966
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 35 KPYLMENQKVWVPDPADGFVLGRILDLGMDEVTV 68
KPY + VW+PDP +G++ G I D+VT+
Sbjct: 25 KPY-DSKKNVWIPDPEEGYLAGEITATKGDQVTI 57
>sp|Q60LV4|MYO3_CAEBR Myosin-3 OS=Caenorhabditis briggsae GN=myo-3 PE=3 SV=1
Length = 1969
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTV 68
+ W+PDP DGFV I D+VTV
Sbjct: 36 KNCWIPDPEDGFVAAEIQSTTGDQVTV 62
>sp|P12844|MYO3_CAEEL Myosin-3 OS=Caenorhabditis elegans GN=myo-3 PE=2 SV=1
Length = 1969
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTV 68
+ W+PDP DGFV I ++VTV
Sbjct: 36 KNCWIPDPEDGFVAAEIQSTTGEQVTV 62
>sp|P12845|MYO2_CAEEL Myosin-2 OS=Caenorhabditis elegans GN=myo-2 PE=2 SV=2
Length = 1947
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTV 68
+ VW+PD DG++ G I D VTV
Sbjct: 31 KNVWIPDSEDGYIEGVITKTAGDNVTV 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,306,999
Number of Sequences: 539616
Number of extensions: 1494289
Number of successful extensions: 2461
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2451
Number of HSP's gapped (non-prelim): 15
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)