Query psy176
Match_columns 101
No_of_seqs 46 out of 48
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 18:12:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4anj_A Unconventional myosin-V 99.1 7E-11 2.4E-15 105.6 5.8 64 38-101 1-64 (1052)
2 2v26_A Myosin VI; calmodulin-b 98.9 9.6E-10 3.3E-14 95.5 5.4 60 42-101 1-60 (784)
3 4db1_A Myosin-7; S1DC, cardiac 98.7 2.6E-08 8.9E-13 86.9 6.2 63 36-100 29-91 (783)
4 1i84_S Smooth muscle myosin he 98.6 8.6E-08 2.9E-12 84.7 7.3 64 37-101 27-90 (1184)
5 1kk8_A Myosin heavy chain, str 98.5 1.1E-07 3.8E-12 83.2 6.2 64 36-100 26-89 (837)
6 2ycu_A Non muscle myosin 2C, a 98.4 2.2E-07 7.4E-12 82.2 5.9 63 37-100 4-66 (995)
7 1g8x_A Myosin II heavy chain f 98.2 2.3E-06 7.9E-11 76.0 6.0 62 37-100 28-92 (1010)
8 1w9i_A Myosin II heavy chain; 98.1 3.3E-06 1.1E-10 73.7 6.4 59 40-100 31-92 (770)
9 1w7j_A Myosin VA; motor protei 97.6 4.8E-05 1.7E-09 66.4 5.2 62 38-101 7-76 (795)
10 2dfs_A Myosin-5A; myosin-V, in 97.3 9.9E-05 3.4E-09 66.0 3.0 63 37-101 6-76 (1080)
11 2qqr_A JMJC domain-containing 90.6 0.61 2.1E-05 32.9 5.7 37 35-71 3-39 (118)
12 3h8z_A FragIle X mental retard 85.8 4.2 0.00014 28.6 7.5 50 41-90 5-54 (128)
13 2xk0_A Polycomb protein PCL; t 82.7 6.8 0.00023 25.7 6.9 49 39-89 17-65 (69)
14 2e70_A Transcription elongatio 79.3 3.3 0.00011 26.9 4.5 43 41-85 21-64 (71)
15 2xdp_A Lysine-specific demethy 74.9 2.2 7.4E-05 30.2 2.9 39 33-71 2-40 (123)
16 3voq_A Target of rapamycin com 57.8 27 0.00093 24.8 5.8 43 43-86 19-70 (125)
17 4hcz_A PHD finger protein 1; p 51.3 44 0.0015 21.1 7.2 52 37-90 3-56 (58)
18 4dt4_A FKBP-type 16 kDa peptid 48.8 31 0.0011 24.6 5.0 53 38-90 113-168 (169)
19 1ib8_A Conserved protein SP14. 48.7 37 0.0013 24.0 5.3 43 46-88 111-156 (164)
20 4b9w_A TDRD1, tudor domain-con 48.0 67 0.0023 22.4 6.5 51 39-90 67-119 (201)
21 4a4f_A SurviVal of motor neuro 45.2 47 0.0016 19.8 6.7 51 39-90 10-63 (64)
22 3mfb_A Uncharacterized protein 41.9 46 0.0016 24.1 5.0 66 19-90 50-124 (157)
23 2wac_A CG7008-PA; unknown func 40.8 84 0.0029 21.4 6.8 51 39-90 53-104 (218)
24 4e8b_A Ribosomal RNA small sub 40.7 21 0.0007 26.6 3.0 34 38-71 34-67 (251)
25 4b9x_A TDRD1, tudor domain-con 40.5 88 0.003 22.3 6.3 51 39-90 67-119 (226)
26 1vhy_A Hypothetical protein HI 37.4 47 0.0016 24.8 4.5 35 38-72 36-70 (257)
27 1vhk_A Hypothetical protein YQ 33.2 60 0.002 24.3 4.6 35 38-72 37-71 (268)
28 2m0o_A PHD finger protein 1; t 32.0 1.1E+02 0.0039 20.3 6.3 50 38-89 27-78 (79)
29 2k47_A Phosphoprotein, P prote 30.4 28 0.00096 23.3 2.1 31 60-90 5-35 (79)
30 2f1f_A Acetolactate synthase i 29.5 27 0.00094 24.8 2.0 18 56-73 111-128 (164)
31 2egv_A UPF0088 protein AQ_165; 29.2 53 0.0018 24.0 3.6 34 38-72 29-62 (229)
32 2kr7_A FKBP-type peptidyl-prol 28.5 93 0.0032 21.2 4.6 51 39-89 95-148 (151)
33 2pc6_A Probable acetolactate s 27.1 30 0.001 24.8 1.9 18 56-73 112-129 (165)
34 1z85_A Hypothetical protein TM 27.1 89 0.0031 23.1 4.6 35 38-72 41-75 (234)
35 1at0_A 17-hedgehog; developmen 25.7 1.4E+02 0.005 20.0 5.1 57 30-89 84-143 (145)
36 3ifr_A Carbohydrate kinase, FG 25.1 69 0.0024 25.4 3.8 39 48-88 3-44 (508)
37 3f1p_B ARYL hydrocarbon recept 24.7 1E+02 0.0035 17.5 4.9 26 38-63 82-117 (121)
38 4a5z_A MITD1, MIT domain-conta 24.6 29 0.00098 25.5 1.4 21 26-49 22-43 (163)
39 3ezw_A Glycerol kinase; glycer 24.6 1E+02 0.0035 24.5 4.8 35 53-89 5-42 (526)
40 2fgc_A Acetolactate synthase, 23.9 39 0.0013 25.1 2.0 18 56-73 138-155 (193)
41 4f3l_B BMAL1B; BHLH, PAS, circ 23.7 86 0.0029 23.9 4.0 35 27-63 339-383 (387)
42 3kw2_A Probable R-RNA methyltr 23.5 1.1E+02 0.0039 22.8 4.6 34 38-71 33-66 (257)
43 2kxy_A Uncharacterized protein 23.0 1.4E+02 0.0048 18.7 4.4 26 42-68 14-39 (100)
44 3icu_A E3 ubiquitin-protein li 22.3 1.2E+02 0.0042 22.2 4.4 41 7-47 28-78 (194)
45 2e6z_A Transcription elongatio 21.2 1.2E+02 0.004 18.0 3.5 43 41-85 11-56 (59)
46 2qgg_A 16S rRNA-processing pro 20.7 2E+02 0.0069 20.2 5.2 38 51-88 122-166 (182)
47 3swo_A Glutaryl-COA dehydrogen 20.3 1.9E+02 0.0064 21.6 5.2 33 54-86 196-233 (399)
48 1rx0_A Acyl-COA dehydrogenase 20.2 1.6E+02 0.0054 22.1 4.8 29 58-86 197-230 (393)
No 1
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.10 E-value=7e-11 Score=105.59 Aligned_cols=64 Identities=41% Similarity=0.798 Sum_probs=54.7
Q ss_pred ccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCCC
Q psy176 38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS 101 (101)
Q Consensus 38 md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNCs 101 (101)
|++|.+||+|||++||++|+|++.+.++++|++++.+++.++++.++++|+..+...+|||.|+
T Consensus 1 me~G~~VWv~d~~~~~~~a~v~~~~~~~~~v~~~~~~g~~~~~~~~~v~~~n~~~~~~veDl~~ 64 (1052)
T 4anj_A 1 MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS 64 (1052)
T ss_dssp ---CCCEEEEETTTEEEEEEEEEECSSEEEEEEC----CCEEEEGGGCEECCSCSSCCCSBGGG
T ss_pred CCCCCEEEEEcCCCCEEEEEEEEEcCCcEEEEEeCCCCcEEEecHHHcCCCCCCccCCCccccc
Confidence 7899999999999999999999999999999999988999999999999999988889999874
No 2
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=98.91 E-value=9.6e-10 Score=95.45 Aligned_cols=60 Identities=43% Similarity=0.830 Sum_probs=52.7
Q ss_pred cEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCCC
Q psy176 42 QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS 101 (101)
Q Consensus 42 q~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNCs 101 (101)
++||+|||++||++|+|++++++.++|++++.++++++++.++++|+.++....+||.|.
T Consensus 1 ~~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Dl~~ 60 (784)
T 2v26_A 1 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS 60 (784)
T ss_dssp CCEEEEETTTEEEEEEEEEECSSEEEEEC----CCCEEEEGGGCEECCSCSSCCCSBGGG
T ss_pred CeEEEEcCCCcEEEEEEEEecCCeEEEEEECCCCCEEEEehhhccccccccccccchhhh
Confidence 579999999999999999999999999998777899999999999999888889999874
No 3
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=98.66 E-value=2.6e-08 Score=86.86 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=56.3
Q ss_pred ccccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCC
Q psy176 36 PYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNY 100 (101)
Q Consensus 36 ~~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNC 100 (101)
+|++.+++||+|||++||+.|+|++..++.++|+.- .+++++++.++|+|+.......+||-|
T Consensus 29 ~~~~~~~~vWv~d~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~v~~~np~~~~~~eDl~ 91 (783)
T 4db1_A 29 RPFDLKKDVFVPDDKQEFVKAKIVSREGGKVTAETE--YGKTVTVKEDQVMQQNPPKFDKIEDMA 91 (783)
T ss_dssp SCCCTTTEEEEECSSSSEEEEEEEEECSSEEEEEET--TTEEEEEEGGGCEECCCGGGTTCSBGG
T ss_pred cCCcCCCEEEEECCCCCEEEEEEEEecCCEEEEEEC--CCCEEeCCHHHcccCCCCccCCcchhh
Confidence 578999999999999999999999999999999843 468899999999999887667888876
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.58 E-value=8.6e-08 Score=84.66 Aligned_cols=64 Identities=27% Similarity=0.338 Sum_probs=56.5
Q ss_pred cccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCCC
Q psy176 37 YLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS 101 (101)
Q Consensus 37 ~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNCs 101 (101)
|++.+..||+|||.+||+.|+|++..++.++|+..+. ++.++++.++++|+....-..+||.|.
T Consensus 27 ~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~n~~~~~~~~Dl~~ 90 (1184)
T 1i84_S 27 DWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQEN-GKKVTLSKDDIQKMNPPKFSKVEDMAE 90 (1184)
T ss_dssp HTTCTTEEEECCTTTSSEEEEEEEEETTEEEEEETTT-CCEEEEETTSCEECCCGGGTTCSBTTS
T ss_pred CcccCCeEEEECCCCCeEEEEEEEecCCeEEEEEcCC-CcEEEeeHHHccCCCCccccccchhhh
Confidence 6788999999999999999999999999999997655 789999999999998754457888874
No 5
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=98.52 E-value=1.1e-07 Score=83.22 Aligned_cols=64 Identities=20% Similarity=0.349 Sum_probs=56.8
Q ss_pred ccccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCC
Q psy176 36 PYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNY 100 (101)
Q Consensus 36 ~~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNC 100 (101)
.|++.+..||+|||++||+.|+|++..++.++|+..+. +++++++.++++|+....-..+||.|
T Consensus 26 ~~~~~~~~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~-g~~~~v~~~~~~~~np~~~~~~~Dl~ 89 (837)
T 1kk8_A 26 AAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVAD-SSTRTVKKDDIQSMNPPKFEKLEDMA 89 (837)
T ss_dssp CCCCTTTEEEEEETTTEEEEEEEEEEETTEEEEEETTT-CCEEEEEGGGCEECCCGGGTTCSBGG
T ss_pred cccccCCEEEEECCCCCeeEEEEEeecCCeEEEEEcCC-CceEEeeHHHccccCchhhcchhhhh
Confidence 47899999999999999999999999999999997654 78999999999999875556788876
No 6
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=98.43 E-value=2.2e-07 Score=82.24 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=55.9
Q ss_pred cccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCC
Q psy176 37 YLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNY 100 (101)
Q Consensus 37 ~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNC 100 (101)
|++.+..||+|||++||+.|+|++..++.++|+..++ ++.++++.++++|+....-..+||.|
T Consensus 4 ~~~~~~~vwv~~~~~~~~~~~v~~~~~~~~~v~~~~~-~~~~~v~~~~~~~~np~~~~~~~Dl~ 66 (995)
T 2ycu_A 4 EWTARRLVWVPSELHGFEAAALRDEGEEEAEVELAES-GRRLRLPRDQIQRMNPPKFSKAEDMA 66 (995)
T ss_dssp CCGGGCEEEEEETTTEEEEEEEEEECSSEEEEEETTT-CCEEEEEGGGCEECCCGGGTTCSBGG
T ss_pred cccCCCeEEEECCCCceEEEEEEEecCCeEEEEECCC-CeEEEeeHHHcccCCCccccccchhh
Confidence 7788999999999999999999999999999998765 67889999999999875556788876
No 7
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=98.15 E-value=2.3e-06 Score=76.04 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=54.9
Q ss_pred cccCCcEEE---ecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCC
Q psy176 37 YLMENQKVW---VPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNY 100 (101)
Q Consensus 37 ~md~gq~VW---apDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNC 100 (101)
|++.+.+|| +|||++||+.|+|++..++.++|+..++ +.++++.++++|+....-..+||.|
T Consensus 28 ~~~~~~~vW~~~v~~~~~~~~~~~v~~~~~~~~~v~~~~g--~~~~v~~~~~~~~np~~~~~~~Dl~ 92 (1010)
T 1g8x_A 28 TVSDKRYIWYNPDPDERDSYECGEIVSETSDSFTFKTVDG--QDRQVKKDDANQRNPIKFDGVEDMS 92 (1010)
T ss_dssp CCCCCCEEEECSSTTCTTCCEEEEEEEEETTEEEEECSSS--SEEEEETTTCCBCCCGGGTTCSBGG
T ss_pred chhcCCceeCccCcCcccCeeEEEEEEecCCeEEEEecCC--cEEEecHHhccccCcchhcchhhhh
Confidence 788999999 9999999999999999999999997654 5889999999999876556788876
No 8
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=98.13 E-value=3.3e-06 Score=73.73 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=51.1
Q ss_pred CCcEEEecCC---CCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCC
Q psy176 40 ENQKVWVPDP---ADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNY 100 (101)
Q Consensus 40 ~gq~VWapDp---~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNC 100 (101)
.+.+||+||+ ++||+.|+|++..++.++|+ .+ .++.++++.++++|+....-..+||.|
T Consensus 31 ~~~~vWv~~~~~~~~~~~~~~v~~~~~~~~~v~-~~-~g~~~~v~~~~v~~~np~~~~~~~Dl~ 92 (770)
T 1w9i_A 31 DKRYIWYNPDPKERDSYECGEIVSETSDSFTFK-TV-DGQDRQVKKDDANQRNPIKFDGVEDMS 92 (770)
T ss_dssp -CCEEEECSSTTCTTCCEEEEEEEECSSEEEEE-CT-TSCEEEEETTTCEECCCGGGTTCSBGG
T ss_pred CCCEEEeeCCcccccCceEEEEEEecCCeEEee-cC-CCcEEEEchHhccccCcccccchhhhh
Confidence 6899999999 99999999999999999999 43 478899999999999876556788876
No 9
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=97.64 E-value=4.8e-05 Score=66.41 Aligned_cols=62 Identities=15% Similarity=0.294 Sum_probs=47.0
Q ss_pred ccCCcEEEecCCCCCeEEEEEEE-c--cCCeEEEEEcCCCCCeEEecC----CceecC-cCCCCCCcCCCCC
Q psy176 38 LMENQKVWVPDPADGFVLGRILD-L--GMDEVTVQPLDSKKPKAAFSL----DRVYTA-EEHDSKDVDDNYS 101 (101)
Q Consensus 38 md~gq~VWapDp~eGFiLgrIvD-I--G~d~~TVqPld~k~~~~~~~y----ddVFPA-eED~~KDVDDNCs 101 (101)
+..|..||+|||++||+.|+|++ + |.+.++|++.+ ++.++++. ++++|. ..+.-..+||.|.
T Consensus 7 ~~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~--g~~~~v~~~~~~~~~~~~~np~~~~~~~Dl~~ 76 (795)
T 1w7j_A 7 YTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEE--GKDLEYCLDPKTKELPPLRNPDILVGENDLTA 76 (795)
T ss_dssp CCTTCEEEEEETTTEEEEEEESSCCCTTCSEEEEECSS--SSEEEEECCTTTTCCCCBCCCGGGTTCSSSTT
T ss_pred cccCCEEEEECCCCceEEEEEEeeccCCCceEEEEECC--CCEEEEeccCcccccccccCcchhccccchhh
Confidence 56789999999999999999995 3 56679998764 67788887 467774 3433356888763
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.31 E-value=9.9e-05 Score=65.95 Aligned_cols=63 Identities=14% Similarity=0.289 Sum_probs=46.0
Q ss_pred cccCCcEEEecCCCCCeEEEEEEE-c--cCCeEEEEEcCCCCCeEEecC----CceecC-cCCCCCCcCCCCC
Q psy176 37 YLMENQKVWVPDPADGFVLGRILD-L--GMDEVTVQPLDSKKPKAAFSL----DRVYTA-EEHDSKDVDDNYS 101 (101)
Q Consensus 37 ~md~gq~VWapDp~eGFiLgrIvD-I--G~d~~TVqPld~k~~~~~~~y----ddVFPA-eED~~KDVDDNCs 101 (101)
.+..|..||+|||.+||+.|+|+. + |...++|++.+ ++.++++. ++++|. ..+.-..+||.|.
T Consensus 6 ~~~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~--g~~~~~~~~~~~~~~~~~~np~~~~~~~Dl~~ 76 (1080)
T 2dfs_A 6 LYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEE--GKDLEYCLDPKTKELPPLRNPDILVGENDLTA 76 (1080)
T ss_dssp CCCTTCEEEEEETTTEEEEEECSSCCCTTCSEEECCCSS--SSCCEEECCTTTCCCCCBCCCGGGSSCSBSTT
T ss_pred hcccCCEEEEECCCCceEEEEEEeeecCCCceEEEEECC--CCEEEEecCCcccccccccCcccccchhhhhh
Confidence 356789999999999999999995 3 56679998665 46666666 457774 3433356888763
No 11
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=90.61 E-value=0.61 Score=32.86 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=31.0
Q ss_pred eccccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEc
Q psy176 35 KPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPL 71 (101)
Q Consensus 35 ~~~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPl 71 (101)
.+++--||.||+.|.+-.|-.|+|+++.+.++=..-.
T Consensus 3 ~~~v~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F 39 (118)
T 2qqr_A 3 MQSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNF 39 (118)
T ss_dssp SSCCCTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEE
T ss_pred cceeccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEc
Confidence 4677789999999999999999999998876655444
No 12
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=85.81 E-value=4.2 Score=28.62 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=40.1
Q ss_pred CcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcC
Q psy176 41 NQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEE 90 (101)
Q Consensus 41 gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeE 90 (101)
+..|=++..+..|-.|.|+||+.++++|.-.+.-.+..+.|+++|-|.-.
T Consensus 5 ~~~VEV~~~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~ 54 (128)
T 3h8z_A 5 GLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPP 54 (128)
T ss_dssp TCEEEEECTTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCC
T ss_pred ccEEEEecCCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCC
Confidence 34555666778899999999999999999876645678899999987543
No 13
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=82.75 E-value=6.8 Score=25.70 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=40.8
Q ss_pred cCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCc
Q psy176 39 MENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAE 89 (101)
Q Consensus 39 d~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAe 89 (101)
..|+-|-|+...-.|-||+|+|...+..-|+=.|+ ..+-+-+.++--..
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~--S~~Wv~~kdi~kl~ 65 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQ--SEQWCEPDKLRKLG 65 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTC--CEEEECTTTEECSS
T ss_pred ccCCeEEEEecCCCEEEEEEEecCCceEEEEecCC--cceeeeHHHHHhhc
Confidence 57899999999999999999999999999987776 56667777776443
No 14
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.28 E-value=3.3 Score=26.95 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=33.5
Q ss_pred CcEEEecC-CCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCce
Q psy176 41 NQKVWVPD-PADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRV 85 (101)
Q Consensus 41 gq~VWapD-p~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddV 85 (101)
||.|=++. |--|| +|+|+|...+.+.|+ |+++.++++.+-+.+
T Consensus 21 GktV~I~kGpyKG~-~GiVkd~t~~~~RVE-Lhs~~K~VtV~r~~l 64 (71)
T 2e70_A 21 GQTVRISQGPYKGY-IGVVKDATESTARVE-LHSTCQTISVDRQRL 64 (71)
T ss_dssp TSEEEECSSTTTTC-EEEEEEECSSCEEEE-ESSSCCEEEECTTTE
T ss_pred CCEEEEeccCCCCe-EEEEEECCCCeEEEE-ecCCceEEEEEhhhc
Confidence 34444443 44566 699999999999999 888889999888776
No 15
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=74.90 E-value=2.2 Score=30.22 Aligned_cols=39 Identities=8% Similarity=0.036 Sum_probs=31.0
Q ss_pred eeeccccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEc
Q psy176 33 KFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPL 71 (101)
Q Consensus 33 ~~~~~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPl 71 (101)
++.+++--||.||+.|.+-=|-.|+|++|....+=..-.
T Consensus 2 ~~~~~v~vGq~V~ak~~ngryy~~~V~~~~~~~~y~V~F 40 (123)
T 2xdp_A 2 MCEKVISVGQTVITKHRNTRYYSCRVMAVTSQTFYEVMF 40 (123)
T ss_dssp --CCCCCTTCCCCCCCCCCCCCCCEEEEEEEEEEEEEEE
T ss_pred CCccccccCCEEEEECCCCcEEeEEEEEEeeEEEEEEEc
Confidence 456788889999999999999999999999876544333
No 16
>3voq_A Target of rapamycin complex 2 subunit mapkap1; PH domain, membrane protein; 2.00A {Homo sapiens}
Probab=57.85 E-value=27 Score=24.82 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=34.1
Q ss_pred EEEecCCCCCeEEEEEEEccCCeEEEEEcCCC---------CCeEEecCCcee
Q psy176 43 KVWVPDPADGFVLGRILDLGMDEVTVQPLDSK---------KPKAAFSLDRVY 86 (101)
Q Consensus 43 ~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k---------~~~~~~~yddVF 86 (101)
.||.-+|- -|..-|+--|.+|-+.|-|..++ +++++.+++.|=
T Consensus 19 ~V~rk~~m-r~~te~~L~IdGd~ihI~P~~~~k~~~kf~~~~K~ts~~~~~Vv 70 (125)
T 3voq_A 19 KVSMIHRL-RFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLC 70 (125)
T ss_dssp EEEEEETT-TEEEEEEEEECSSEEEEEECC------CSBCCCCCEEEEGGGEE
T ss_pred EEEEEccc-eeceeEEEEecCcEEEEeeccCCccccccccCCcceEEeecceE
Confidence 46666666 67788999999999999999643 588888888886
No 17
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=51.25 E-value=44 Score=21.13 Aligned_cols=52 Identities=21% Similarity=0.084 Sum_probs=42.2
Q ss_pred cccCCcEEEecCCCCCeEEEEEEEccCC--eEEEEEcCCCCCeEEecCCceecCcC
Q psy176 37 YLMENQKVWVPDPADGFVLGRILDLGMD--EVTVQPLDSKKPKAAFSLDRVYTAEE 90 (101)
Q Consensus 37 ~md~gq~VWapDp~eGFiLgrIvDIG~d--~~TVqPld~k~~~~~~~yddVFPAeE 90 (101)
-...|+-|=|+...-=|-||+|+.+... ...|+=-|+ .+.-+.+.++.++..
T Consensus 3 ~f~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~--s~~W~~~kdi~~~~~ 56 (58)
T 4hcz_A 3 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDD--SQFLVLWKDISPAAL 56 (58)
T ss_dssp SCCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTS--CEEEEEGGGEEECSC
T ss_pred ccccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCC--CeEEEEhHHcccccC
Confidence 3467899999999988999999997665 788887766 677788888887653
No 18
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=48.79 E-value=31 Score=24.57 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=37.3
Q ss_pred ccCCcEEEecCCCCCeEEEEEEEccCCeEEE---EEcCCCCCeEEecCCceecCcC
Q psy176 38 LMENQKVWVPDPADGFVLGRILDLGMDEVTV---QPLDSKKPKAAFSLDRVYTAEE 90 (101)
Q Consensus 38 md~gq~VWapDp~eGFiLgrIvDIG~d~~TV---qPld~k~~~~~~~yddVFPAeE 90 (101)
+.-|..+-+..++-.-+.++|++|..+.+|| -||.++.=++.+-.-+|-+|-|
T Consensus 113 ~~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~vr~At~ 168 (169)
T 4dt4_A 113 PEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALE 168 (169)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEESCCCC
T ss_pred CCCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEeeCCC
Confidence 3457778887776556789999999999999 5776655555555555555543
No 19
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=48.71 E-value=37 Score=23.96 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=30.3
Q ss_pred ecCCCCC--eEEEEEEEccCCeEEEEEcCC-CCCeEEecCCceecC
Q psy176 46 VPDPADG--FVLGRILDLGMDEVTVQPLDS-KKPKAAFSLDRVYTA 88 (101)
Q Consensus 46 apDp~eG--FiLgrIvDIG~d~~TVqPld~-k~~~~~~~yddVFPA 88 (101)
...|.+| -..|+|..+..++++++.-+. .++.++.||++|=-|
T Consensus 111 l~~~~~g~k~~~G~L~~~~~~~v~l~~~~k~~~~~~~i~~~~I~ka 156 (164)
T 1ib8_A 111 LYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKKTVQIPYSLVSKA 156 (164)
T ss_dssp CSSCSSSCSEEEEEEEEEETTEEEEEEECSSCEEEEEECSSCCSSC
T ss_pred EecccCCceEEEEEEEEEeCCEEEEEEecccCCeEEEEEHHHCcEE
Confidence 3344444 558999999999999986532 235778899988443
No 20
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=47.96 E-value=67 Score=22.41 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=41.0
Q ss_pred cCCcEEEecCCCCC-eEEEEEEEc-cCCeEEEEEcCCCCCeEEecCCceecCcC
Q psy176 39 MENQKVWVPDPADG-FVLGRILDL-GMDEVTVQPLDSKKPKAAFSLDRVYTAEE 90 (101)
Q Consensus 39 d~gq~VWapDp~eG-FiLgrIvDI-G~d~~TVqPld~k~~~~~~~yddVFPAeE 90 (101)
.-|+.+=|..+.|| +--|+|+.+ ..+.++|.-+|- |.+-..+.+++++-.+
T Consensus 67 ~~G~~c~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDy-G~~~~v~~~~l~~l~~ 119 (201)
T 4b9w_A 67 EIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDY-GNVEEVTTDQLQAILP 119 (201)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTT-CCEEEECGGGEEECCG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEcc-CCEEEEEHHHhccChH
Confidence 45788888888887 788999998 456799999998 6677788888887654
No 21
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=45.18 E-value=47 Score=19.78 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=41.3
Q ss_pred cCCcEEEecCCCCC-eEEEEEEEccC--CeEEEEEcCCCCCeEEecCCceecCcC
Q psy176 39 MENQKVWVPDPADG-FVLGRILDLGM--DEVTVQPLDSKKPKAAFSLDRVYTAEE 90 (101)
Q Consensus 39 d~gq~VWapDp~eG-FiLgrIvDIG~--d~~TVqPld~k~~~~~~~yddVFPAeE 90 (101)
.-|.++=|+-..|| |=-|+|..|.. +.++|.-+|= +.+-+++.+++-|.+|
T Consensus 10 ~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdY-Gn~e~V~~~~Lrpl~~ 63 (64)
T 4a4f_A 10 KVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGY-GNAEVTPLLNLKPVEE 63 (64)
T ss_dssp CTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTT-TEEEEEEGGGEECCSC
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEec-CCEEEEeHHHcEeCCC
Confidence 34677888887777 78899999986 6899999986 5667789999988765
No 22
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=41.91 E-value=46 Score=24.15 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=37.3
Q ss_pred EEEEeeeeccee--eeeeeccccCC-cEEEecCCCCCeEE-----EEEEEccCCeEEEEEcCCC-CCeEEecCCceecCc
Q psy176 19 SVVVGAVDFESV--VYKFKPYLMEN-QKVWVPDPADGFVL-----GRILDLGMDEVTVQPLDSK-KPKAAFSLDRVYTAE 89 (101)
Q Consensus 19 ~~~~~~~~~~~~--~~~~~~~md~g-q~VWapDp~eGFiL-----grIvDIG~d~~TVqPld~k-~~~~~~~yddVFPAe 89 (101)
+|=|.++.|.+. .|.|...-..+ -+.|-|+.. |+.. ....-+-...++|.|+-.+ +.++ .+||+-
T Consensus 50 ~V~V~~~~~d~~tg~yeft~~~~~g~tI~WTPa~p-g~~~P~~Tg~~~~p~~p~~i~v~piP~~~~~~i-----~~~P~p 123 (157)
T 3mfb_A 50 QVRVRLLKHDFPNNRYEFWEEGATGPTILWTPDNP-GIELPTDTAHGEQPVIPSAIPGLEIPEMDDVSI-----LATPMP 123 (157)
T ss_dssp EEEEEECEEEGGGTEEEECCTTCSSCSEEECTTSC-SEECSSCCCEEEEECCTTCCTBCCSCCCTTCCE-----ECSCCC
T ss_pred ceEEEEEEEeccCCceEEEecCCCCceEEEcCCCC-CCCCCcccCCCCCCcccCCccccccCCCCCccc-----cccCCC
Confidence 344444444444 99999976555 589999987 8864 1333343444444444321 2233 267774
Q ss_pred C
Q psy176 90 E 90 (101)
Q Consensus 90 E 90 (101)
|
T Consensus 124 e 124 (157)
T 3mfb_A 124 D 124 (157)
T ss_dssp C
T ss_pred c
Confidence 3
No 23
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=40.85 E-value=84 Score=21.43 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=40.2
Q ss_pred cCCcEEEecCCC-CCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcC
Q psy176 39 MENQKVWVPDPA-DGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEE 90 (101)
Q Consensus 39 d~gq~VWapDp~-eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeE 90 (101)
.-|+.+=|+... ..|--|+|+.+..+.++|.-+|- |.+..++.+++.|-.+
T Consensus 53 ~~g~~c~a~~~~d~~wyRa~V~~v~~~~~~V~~vDy-G~~~~v~~~~l~~l~~ 104 (218)
T 2wac_A 53 KRGDLVAAQFTLDNQWYRAKVERVQGSNATVLYIDY-GNKETLPTNRLAALPP 104 (218)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEETTEEEEEETTT-CCEEEEEGGGEEECCG
T ss_pred CcCCEEEEEECCCCeEEEEEEEEecCCeEEEEEEec-CCeEEEchHHcccCCh
Confidence 457888888875 45888999999999999999986 6666777777776543
No 24
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=40.72 E-value=21 Score=26.60 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=30.2
Q ss_pred ccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEc
Q psy176 38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPL 71 (101)
Q Consensus 38 md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPl 71 (101)
|..|..|.+-|-+.+.-.|+|++++.+.++++.+
T Consensus 34 ~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~ 67 (251)
T 4e8b_A 34 MGPGQALQLFDGSNQVFDAEITSASKKSVEVKVL 67 (251)
T ss_dssp CCSCCEEEEECSSSEEEEEEEEEECSSCEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEEEEEeecceEEEEEe
Confidence 4578999999999999999999999999888755
No 25
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=40.50 E-value=88 Score=22.27 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=40.9
Q ss_pred cCCcEEEecCCCCC-eEEEEEEEc-cCCeEEEEEcCCCCCeEEecCCceecCcC
Q psy176 39 MENQKVWVPDPADG-FVLGRILDL-GMDEVTVQPLDSKKPKAAFSLDRVYTAEE 90 (101)
Q Consensus 39 d~gq~VWapDp~eG-FiLgrIvDI-G~d~~TVqPld~k~~~~~~~yddVFPAeE 90 (101)
.-|+.+=|....|| +--|+|+.+ +.+.++|.-+|- |..-..+.+++++-.+
T Consensus 67 ~~G~~c~a~~~~d~~WyRa~V~~~~~~~~~~V~~vDy-Gn~~~v~~~~l~~l~~ 119 (226)
T 4b9x_A 67 EIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDY-GNVEEVTTDQLQAILP 119 (226)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECSSSEEEEECTTT-CCEEEEEGGGEECCCG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEec-CCEEEEEHHHhccChH
Confidence 45788888888777 788999998 456799999998 6677788888887654
No 26
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=37.37 E-value=47 Score=24.78 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=30.9
Q ss_pred ccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcC
Q psy176 38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLD 72 (101)
Q Consensus 38 md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld 72 (101)
|..|..|.+-|-..+.-.|+|++++.+.++++.+.
T Consensus 36 l~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~~ 70 (257)
T 1vhy_A 36 MTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILG 70 (257)
T ss_dssp CCTTCEEEEECSSSEEEEEEEEEECSSCEEEEECC
T ss_pred cCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEEE
Confidence 45688999999998899999999999999998764
No 27
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=33.17 E-value=60 Score=24.35 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=30.6
Q ss_pred ccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcC
Q psy176 38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLD 72 (101)
Q Consensus 38 md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld 72 (101)
|..|..|.+-|-+.+.-.|+|++++.+.++++.+.
T Consensus 37 l~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~~i~~ 71 (268)
T 1vhk_A 37 MNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIE 71 (268)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEEE
Confidence 45788999999999999999999999999887654
No 28
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=32.04 E-value=1.1e+02 Score=20.33 Aligned_cols=50 Identities=22% Similarity=0.136 Sum_probs=39.9
Q ss_pred ccCCcEEEecCCCCCeEEEEEEEcc--CCeEEEEEcCCCCCeEEecCCceecCc
Q psy176 38 LMENQKVWVPDPADGFVLGRILDLG--MDEVTVQPLDSKKPKAAFSLDRVYTAE 89 (101)
Q Consensus 38 md~gq~VWapDp~eGFiLgrIvDIG--~d~~TVqPld~k~~~~~~~yddVFPAe 89 (101)
...|+-|=|+...-=|-||+|+.+. .+...|+=-|+ ..+-+.+-++.+|.
T Consensus 27 f~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~--S~~W~~~kdi~~~~ 78 (79)
T 2m0o_A 27 LWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDD--SQFLVLWKDISPAA 78 (79)
T ss_dssp CCTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTS--CEEEEETTTBCCCC
T ss_pred eccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCC--CeEEEEeecccccc
Confidence 3578999999988889999999655 67788876665 67778888888763
No 29
>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus}
Probab=30.44 E-value=28 Score=23.31 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=26.7
Q ss_pred EccCCeEEEEEcCCCCCeEEecCCceecCcC
Q psy176 60 DLGMDEVTVQPLDSKKPKAAFSLDRVYTAEE 90 (101)
Q Consensus 60 DIG~d~~TVqPld~k~~~~~~~yddVFPAeE 90 (101)
|+...+.|.+|-...-++-+...++.|.+++
T Consensus 5 ~L~~t~~tf~sKkAGV~pltV~L~elFsSr~ 35 (79)
T 2k47_A 5 SLSKTSMTFQPKKASLQPLTISLDELFSSRG 35 (79)
T ss_dssp TTCCCEEEEEESSSSSCCEEEESGGGCCCHH
T ss_pred hhccceEEeeccccCCCCeEEEHHHHhcCcC
Confidence 4678899999887777999999999998875
No 30
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=29.54 E-value=27 Score=24.83 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=15.8
Q ss_pred EEEEEccCCeEEEEEcCC
Q psy176 56 GRILDLGMDEVTVQPLDS 73 (101)
Q Consensus 56 grIvDIG~d~~TVqPld~ 73 (101)
|+|+|++.+++++|-...
T Consensus 111 a~ivdv~~~~~~ie~tg~ 128 (164)
T 2f1f_A 111 GQIIDVTPSLYTVQLAGT 128 (164)
T ss_dssp CEEEEECSSEEEEEEEEC
T ss_pred CEEEEECCCEEEEEEeCC
Confidence 699999999999997644
No 31
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=29.20 E-value=53 Score=24.03 Aligned_cols=34 Identities=6% Similarity=0.111 Sum_probs=29.3
Q ss_pred ccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcC
Q psy176 38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLD 72 (101)
Q Consensus 38 md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld 72 (101)
|..|..+.+ |-+.+.-.|+|++++.+.++++...
T Consensus 29 l~~Gd~v~l-dg~g~~~~a~i~~~~~~~~~~~i~~ 62 (229)
T 2egv_A 29 IEKDEEFGV-IHEGKIYVCKVRREDKREISCEIVE 62 (229)
T ss_dssp CCTTCCEEE-EETTEEEEEEEEEECSSEEEEEEEE
T ss_pred CCCCCEEEE-eCCCCEEEEEEEEecCCEEEEEEEE
Confidence 456888999 9888899999999999999887664
No 32
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=28.53 E-value=93 Score=21.18 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=31.2
Q ss_pred cCCcEEEecCCCCCeEEEEEEEccCCeEEEE---EcCCCCCeEEecCCceecCc
Q psy176 39 MENQKVWVPDPADGFVLGRILDLGMDEVTVQ---PLDSKKPKAAFSLDRVYTAE 89 (101)
Q Consensus 39 d~gq~VWapDp~eGFiLgrIvDIG~d~~TVq---Pld~k~~~~~~~yddVFPAe 89 (101)
.-|+.+-+..+.-.-+.|+|++|..+.+||- ||.++.=++..-.-+|-+|.
T Consensus 95 ~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v~v~~v~~at 148 (151)
T 2kr7_A 95 EKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRFKVLGFREVS 148 (151)
T ss_dssp CTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCEEEEEEEEEEECCC
T ss_pred ccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEEEEEEEEEEeecCC
Confidence 3455666655544347899999999999994 45443334444444454444
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=27.15 E-value=30 Score=24.76 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=15.7
Q ss_pred EEEEEccCCeEEEEEcCC
Q psy176 56 GRILDLGMDEVTVQPLDS 73 (101)
Q Consensus 56 grIvDIG~d~~TVqPld~ 73 (101)
|+|+|++.+++++|-...
T Consensus 112 a~ivdv~~~~~~ie~tg~ 129 (165)
T 2pc6_A 112 GNIIDVTNELYTIELTGT 129 (165)
T ss_dssp CEEEEEETTEEEEEEEEC
T ss_pred CEEEEEcCCEEEEEEcCC
Confidence 699999999999997644
No 34
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=27.05 E-value=89 Score=23.13 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=30.3
Q ss_pred ccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcC
Q psy176 38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLD 72 (101)
Q Consensus 38 md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld 72 (101)
|..|..+.+-|-..+.-.|+|++++.+.++++...
T Consensus 41 l~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i~~ 75 (234)
T 1z85_A 41 LKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVK 75 (234)
T ss_dssp CCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEEE
Confidence 45688899999999999999999999999887653
No 35
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=25.71 E-value=1.4e+02 Score=19.98 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=37.5
Q ss_pred eeeeeeccccCCcEEEecCCCCC-eEEEEEEEccCCeE--EEEEcCCCCCeEEecCCceecCc
Q psy176 30 VVYKFKPYLMENQKVWVPDPADG-FVLGRILDLGMDEV--TVQPLDSKKPKAAFSLDRVYTAE 89 (101)
Q Consensus 30 ~~~~~~~~md~gq~VWapDp~eG-FiLgrIvDIG~d~~--TVqPld~k~~~~~~~yddVFPAe 89 (101)
..++|-.-...|+.|++++.++| ++..||+.|...+- -.-||-..+ +.--|+|+-+|
T Consensus 84 ~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~~~~G~yaPlT~~G---tivVn~v~aSc 143 (145)
T 1at0_A 84 LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREG---TIVVNSVAASC 143 (145)
T ss_dssp EEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEEEEEEEEEEESSS---EEEETTEEEES
T ss_pred EEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEEEEeeeEccccCcE---EEEECCEEEEE
Confidence 46677788889999999998555 89999999865332 233554433 33445665443
No 36
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=25.10 E-value=69 Score=25.44 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=27.8
Q ss_pred CCCCCeEEEEEEEccCCeEEEEEcCCCCCeE---EecCCceecC
Q psy176 48 DPADGFVLGRILDLGMDEVTVQPLDSKKPKA---AFSLDRVYTA 88 (101)
Q Consensus 48 Dp~eGFiLgrIvDIG~d~~TVqPld~k~~~~---~~~yddVFPA 88 (101)
+++..|++| +|||++.+.+--+|.+++.+ +.+|+..+|.
T Consensus 3 ~~~~~~~lg--IDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~ 44 (508)
T 3ifr_A 3 LAQGRQVIG--LDIGTTSTIAILVRLPDTVVAVASRPTTLSSPH 44 (508)
T ss_dssp ----CEEEE--EEECSSEEEEEEEETTTEEEEEEEEECCCBCSS
T ss_pred cccCCEEEE--EEecCcceEEEEECCCCCEEEEEEEecceecCC
Confidence 345678988 99999999999898766543 5677777763
No 37
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=24.72 E-value=1e+02 Score=17.45 Aligned_cols=26 Identities=8% Similarity=0.352 Sum_probs=17.4
Q ss_pred ccCCcEEEe-------cCCCCC---eEEEEEEEccC
Q psy176 38 LMENQKVWV-------PDPADG---FVLGRILDLGM 63 (101)
Q Consensus 38 md~gq~VWa-------pDp~eG---FiLgrIvDIG~ 63 (101)
..+|+.+|+ .|+.+| +++|...||..
T Consensus 82 ~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~ 117 (121)
T 3f1p_B 82 SKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKN 117 (121)
T ss_dssp CTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCC
T ss_pred ecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEccc
Confidence 357888886 344333 78888888853
No 38
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=24.62 E-value=29 Score=25.53 Aligned_cols=21 Identities=48% Similarity=1.107 Sum_probs=16.8
Q ss_pred ecceeeeeeeccccCC-cEEEecCC
Q psy176 26 DFESVVYKFKPYLMEN-QKVWVPDP 49 (101)
Q Consensus 26 ~~~~~~~~~~~~md~g-q~VWapDp 49 (101)
.|+++ |.++|+++ +.||+-||
T Consensus 22 SYe~L---Fg~YL~~~~~~I~IeDP 43 (163)
T 4a5z_A 22 SYESL---FREYLNETVTEVWIEDP 43 (163)
T ss_dssp CHHHH---HGGGCCTTCCEEEEECS
T ss_pred cHHHH---HHHHHhCCceEEEEECC
Confidence 45554 88999875 99999998
No 39
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=24.59 E-value=1e+02 Score=24.47 Aligned_cols=35 Identities=14% Similarity=0.345 Sum_probs=28.8
Q ss_pred eEEEEEEEccCCeEEEEEcCCCCCeE---EecCCceecCc
Q psy176 53 FVLGRILDLGMDEVTVQPLDSKKPKA---AFSLDRVYTAE 89 (101)
Q Consensus 53 FiLgrIvDIG~d~~TVqPld~k~~~~---~~~yddVFPAe 89 (101)
|+|| +|+|+.++-+.-+|.+++.+ +.+|..++|..
T Consensus 5 Yvlg--ID~GTss~Ka~l~d~~G~~va~~~~~~~~~~p~~ 42 (526)
T 3ezw_A 5 YIVA--LDQGTTSSRAVVMDHDANIISVSQREFEQIYPKP 42 (526)
T ss_dssp EEEE--EEECSSEEEEEEECTTCCEEEEEEEECCCBCSST
T ss_pred EEEE--EEccccceeeeEEcCCCCEEEEEEEecCcccCCC
Confidence 7777 79999999999999888765 57888888753
No 40
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=23.91 E-value=39 Score=25.15 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=15.7
Q ss_pred EEEEEccCCeEEEEEcCC
Q psy176 56 GRILDLGMDEVTVQPLDS 73 (101)
Q Consensus 56 grIvDIG~d~~TVqPld~ 73 (101)
|+|+|++.+++++|-...
T Consensus 138 a~ivDv~~~s~~iE~tG~ 155 (193)
T 2fgc_A 138 GKIIDVSREGAIIEITGA 155 (193)
T ss_dssp CEEEEECSSEEEEEEEEC
T ss_pred CEEEEEcCCEEEEEEcCC
Confidence 699999999999997644
No 41
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=23.74 E-value=86 Score=23.88 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=25.3
Q ss_pred cceeeeeeeccccCCcEEEec-------CCCCC---eEEEEEEEccC
Q psy176 27 FESVVYKFKPYLMENQKVWVP-------DPADG---FVLGRILDLGM 63 (101)
Q Consensus 27 ~~~~~~~~~~~md~gq~VWap-------Dp~eG---FiLgrIvDIG~ 63 (101)
+.+..|+|.. .+|.-+|+. ++..| |+.|...||..
T Consensus 339 ~~~~eyR~~~--kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~ 383 (387)
T 4f3l_B 339 ITTNCYKFKI--KDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLA 383 (387)
T ss_dssp EECCCEEEEC--TTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC-
T ss_pred eeeEEEEEEc--cCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcch
Confidence 3456788775 489999974 66566 88899899864
No 42
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=23.47 E-value=1.1e+02 Score=22.78 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=29.7
Q ss_pred ccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEc
Q psy176 38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPL 71 (101)
Q Consensus 38 md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPl 71 (101)
|..|..+-+-|.+.+.-.|+|++++.+.++++.+
T Consensus 33 l~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~ 66 (257)
T 3kw2_A 33 MQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVC 66 (257)
T ss_dssp CCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEE
T ss_pred CCCCCEEEEEECCCCEEEEEEEEeeCCEEEEEEE
Confidence 4578999999999888999999999999888655
No 43
>2kxy_A Uncharacterized protein; beta strand protein, structural genomics, PSI-2, protein STR initiative; NMR {Streptococcus thermophilus}
Probab=23.02 E-value=1.4e+02 Score=18.66 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=20.9
Q ss_pred cEEEecCCCCCeEEEEEEEccCCeEEE
Q psy176 42 QKVWVPDPADGFVLGRILDLGMDEVTV 68 (101)
Q Consensus 42 q~VWapDp~eGFiLgrIvDIG~d~~TV 68 (101)
+..+.-.|.+||.++.+. +..+++||
T Consensus 14 ~~~~~G~~~~gy~v~~~~-~~P~~VtV 39 (100)
T 2kxy_A 14 KLELTGDKASNVSSISYS-FDRGHVTI 39 (100)
T ss_dssp EEEEESCCCTTEEEEEEE-ESCCCCEE
T ss_pred EEEEecccCCCeEEEeEE-EccCEEEE
Confidence 667778899999999876 67777777
No 44
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=22.29 E-value=1.2e+02 Score=22.17 Aligned_cols=41 Identities=12% Similarity=-0.141 Sum_probs=28.3
Q ss_pred cceeeEEeeeEEEEE--Ee----eeecceeeeeeeccc----cCCcEEEec
Q psy176 7 NNLTWYTSLISISVV--VG----AVDFESVVYKFKPYL----MENQKVWVP 47 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~m----d~gq~VWap 47 (101)
.-.+|||.++.|+.+ +| .+.|.+.-=+|-.+. ..|.+|.++
T Consensus 28 ~~~~~~~A~vn~sy~d~~~~~n~t~~~~~e~a~FG~~~p~~~v~G~lv~~~ 78 (194)
T 3icu_A 28 GAEAVWTAYLNVSWRVPHTGVNRTVWELSEEGVYGQDSPLEPVAGVLVPPD 78 (194)
T ss_dssp CSSCEEEEEEEEEEECCSSCTTCEEEEEEEEEEECTTSCCSCEEEEEECBS
T ss_pred cceeEEEEEEEEEEECCCCCccceeeecccccccCCCCCCCCcEEEEEecC
Confidence 345899999999998 55 355777777777665 233455554
No 45
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.17 E-value=1.2e+02 Score=17.97 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=30.6
Q ss_pred CcEEEec-CCCCCeEEEEEEEccCCeEEEEEc--CCCCCeEEecCCce
Q psy176 41 NQKVWVP-DPADGFVLGRILDLGMDEVTVQPL--DSKKPKAAFSLDRV 85 (101)
Q Consensus 41 gq~VWap-Dp~eGFiLgrIvDIG~d~~TVqPl--d~k~~~~~~~yddV 85 (101)
|..|=+- -|-.|| .|+|.++-.+.++|.+. +. ..++..+++++
T Consensus 11 GD~V~V~~Gpf~g~-~G~V~evd~e~v~V~v~~fg~-~tpvel~~~qv 56 (59)
T 2e6z_A 11 GDNVEVCEGELINL-QGKILSVDGNKITIMPKHEDL-KDMLEFPAQEL 56 (59)
T ss_dssp TSEEEECSSTTTTC-EEEECCCBTTEEEEEECCSSC-CSCEEEETTTE
T ss_pred CCEEEEeecCCCCC-EEEEEEEeCCEEEEEEEecCC-CceEEEcHHHE
Confidence 4444333 356676 48999999999999985 33 34888888876
No 46
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=20.70 E-value=2e+02 Score=20.20 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCeEEEEEEEc---cCCeEEEEEcC--CCC-CeEEecCC-ceecC
Q psy176 51 DGFVLGRILDL---GMDEVTVQPLD--SKK-PKAAFSLD-RVYTA 88 (101)
Q Consensus 51 eGFiLgrIvDI---G~d~~TVqPld--~k~-~~~~~~yd-dVFPA 88 (101)
+|-.+|+|+|| |+..+-+.-.+ ..+ +.+..||+ ++-|.
T Consensus 122 ~g~~lG~V~~v~~~gandvl~V~~~~~~~g~ke~LIPf~~~~V~~ 166 (182)
T 2qgg_A 122 QEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPWHKDVVQR 166 (182)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEECCSSSSSSCCEEEECCTTTEEE
T ss_pred CCcEEEEEEEEccCCCcEEEEEEeccCCCCCeEEEeecChhhEeE
Confidence 68889999997 44444443221 223 67888883 35443
No 47
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=20.35 E-value=1.9e+02 Score=21.64 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=23.8
Q ss_pred EEEEEEEccCCeEEEEEcCCC-----CCeEEecCCcee
Q psy176 54 VLGRILDLGMDEVTVQPLDSK-----KPKAAFSLDRVY 86 (101)
Q Consensus 54 iLgrIvDIG~d~~TVqPld~k-----~~~~~~~yddVF 86 (101)
+..=+++....++++.|...+ ...-...||+|+
T Consensus 196 ~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~ 233 (399)
T 3swo_A 196 IRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVR 233 (399)
T ss_dssp CEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEE
T ss_pred eEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEE
Confidence 334588999999999887432 345577888887
No 48
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=20.16 E-value=1.6e+02 Score=22.05 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=18.9
Q ss_pred EEEccCCeEEEEEcCC-----CCCeEEecCCcee
Q psy176 58 ILDLGMDEVTVQPLDS-----KKPKAAFSLDRVY 86 (101)
Q Consensus 58 IvDIG~d~~TVqPld~-----k~~~~~~~yddVF 86 (101)
+++....++++.|... ........||+|+
T Consensus 197 lV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~ 230 (393)
T 1rx0_A 197 VVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCA 230 (393)
T ss_dssp EEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEE
T ss_pred EEeCCCCCeEecCcccccccCCCCceEEEEcCeE
Confidence 5677777788876421 1345567788876
Done!