RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy176
(101 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition
state, protein transport; HET: ADP; 1.75A {Sus scrofa}
PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 59.6 bits (145), Expect = 4e-12
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
+ VW P P DGF +G I+D+G D +T++PL+ K +++V+ AEE KDV+DN
Sbjct: 1 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 58
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV;
2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 55.1 bits (133), Expect = 2e-10
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
+ VWVP GF + D G +E V+ +S + D++ +D
Sbjct: 7 ARRLVWVPSELHGFEAAALRDEGEEEAEVELAESGRRL-RLPRDQIQRMNPPKFSKAEDM 65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 54.5 bits (131), Expect = 3e-10
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 43 KVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
VWVP GF I + DEVTV+ ++ K K S D + V+D
Sbjct: 33 LVWVPSEKHGFEAASIKEEKGDEVTVELQENGK-KVTLSKDDIQKMNPPKFSKVEDM 88
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 45.4 bits (108), Expect = 4e-07
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDD 98
+ WVPD +GF I DE+TV+ + + D + + + ++D
Sbjct: 30 GKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTR-TVKKDDIQSMNPPKFEKLED 87
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP;
2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 45.4 bits (108), Expect = 4e-07
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 34 FKPYLMENQKVWV---PDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEE 90
FK + + + +W PD D + G I+ D T + +D + + D
Sbjct: 25 FKLTVSDKRYIWYNPDPDERDSYECGEIVSETSDSFTFKTVDGQDRQ--VKKDDANQRNP 82
Query: 91 HDSKDVDDN 99
V+D
Sbjct: 83 IKFDGVEDM 91
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens}
PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A*
1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A*
1o1f_A* 1o1g_A*
Length = 783
Score = 40.7 bits (96), Expect = 2e-05
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 43 KVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDD 98
V+VPD FV +I+ +VT + K D+V ++D
Sbjct: 36 DVFVPDDKQEFVKAKIVSREGGKVTAETEYGKTVT--VKEDQVMQQNPPKFDKIED 89
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 39.5 bits (93), Expect = 5e-05
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 34 FKPYLMENQKVWV---PDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEE 90
FK + + + +W P D + G I+ D T + +D + + D
Sbjct: 25 FKLTVSDKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQ--VKKDDANQRNP 82
Query: 91 HDSKDVDD 98
V+D
Sbjct: 83 IKFDGVED 90
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.5 bits (77), Expect = 0.006
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 43 KVWVPDPADGFVLGRILDL---GMDEVTVQPLDSKK---PKAAFSLDRVYTAEEHDSKDV 96
+VW+PDP + + +L G + ++ + K + +
Sbjct: 12 RVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGE 71
Query: 97 DDN 99
+D
Sbjct: 72 NDL 74
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V,
chicken, molecular motor, ATPase, ELC, IQ motif, muscle
protein, ATP-binding; HET: ADP; 2A {Gallus gallus}
SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 31.8 bits (73), Expect = 0.020
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 43 KVWVPDPADGFVLGRIL-DLGMDEVTVQPLDSKKPKAAFSLDRV 85
+VW+PDP + + +L D + +Q + + LD
Sbjct: 12 RVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPK 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.58
Identities = 4/15 (26%), Positives = 8/15 (53%), Gaps = 3/15 (20%)
Query: 39 MENQ-KVWVPD--PA 50
++ K++ D PA
Sbjct: 25 LQASLKLYADDSAPA 39
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 27.1 bits (59), Expect = 0.88
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 18 ISVVVGAVDFESVVYKFKPYLMENQKVWVPDPADGFVL 55
+ + V A E PY+ ++ + GF
Sbjct: 86 VILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEF 123
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC,
, structural genomics, protein structure initiative;
2.60A {Helicobacter pylori}
Length = 475
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 50 ADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDR 84
DG+ L R L + + +K P +R
Sbjct: 60 GDGYALARRLVGRFRVLVFEMKLTKSPMCQLQKER 94
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 26.6 bits (58), Expect = 1.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 18 ISVVVGAVDFESVVYKFKPYLMENQKV 44
I +VV A+ S+ Y+ E Q +
Sbjct: 79 ILIVVPAIHHASIAANIASYISEGQLI 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 1.7
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 54 VLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEH 91
+ +L+ + +Q +D + + + SL+ V E H
Sbjct: 1864 TVTNVLN----FIKLQKIDIIELQKSLSLEEV---EGH 1894
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 26.0 bits (58), Expect = 2.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
V +PADG V+G + L + +
Sbjct: 52 VTNPADGSVIGTVPSLSVATI 72
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 25.9 bits (58), Expect = 2.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
V +PA+G LG + +G DE
Sbjct: 29 VTNPANGDKLGSVPKMGADET 49
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 26.0 bits (58), Expect = 2.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
V DPA G LG + +G E
Sbjct: 32 VFDPATGESLGTVPKMGAAET 52
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 26.0 bits (58), Expect = 2.7
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
V +PA G V+ ++ + ++V
Sbjct: 31 VYNPATGSVIAKVPSMPEEDV 51
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial;
mitochondrion, oxidoreductase, transit peptide, disease
mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB:
2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Length = 487
Score = 26.0 bits (58), Expect = 2.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
V DPA G LG + D G+ E
Sbjct: 30 VQDPASGAALGMVADCGVREA 50
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta,
cobalamin biosynthesis, metal-bindin parallel beta
sheet; HET: SIR; 1.90A {Salmonella enterica} PDB:
1qgo_A*
Length = 264
Score = 25.7 bits (56), Expect = 2.8
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPL 71
L + + + P L ++ G +V +Q L
Sbjct: 51 LRQRDGIDIDTPLQ--ALQKLAAQGYQDVAIQSL 82
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2,
protein initiative; 1.90A {Pseudoalteromonas atlantica
T6C}
Length = 497
Score = 25.6 bits (57), Expect = 3.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
+ P+ G V+G I +
Sbjct: 32 ILSPSTGKVIGEIPAGCKADA 52
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39
peptidase-like domain, ABC transporter, haemolysin, HYDR
heteronuclear; NMR {Escherichia coli}
Length = 142
Score = 25.1 bits (55), Expect = 3.9
Identities = 3/23 (13%), Positives = 7/23 (30%), Gaps = 3/23 (13%)
Query: 30 VVYKFKPYLMENQKVWVPDPADG 52
++ K E + + D
Sbjct: 90 ILTKVSK---EANRYLIFDLEQR 109
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 25.2 bits (56), Expect = 4.3
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
V +PA V+ RI D ++
Sbjct: 26 VVNPATEAVISRIPDGQAEDA 46
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis,
precursor, protein transport; 1.90A {Homo sapiens} PDB:
2q5y_A 3tkn_C
Length = 155
Score = 25.1 bits (55), Expect = 4.5
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 26 DFESVVYKFKPYLMENQKVWVPDPAD--GFVLGRILDLGMDEVTVQPLDSKKP------- 76
E +V F ++ + L I+ + EV V D++KP
Sbjct: 25 KGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGLN 84
Query: 77 -KAAFSLDRVYTAEEHDSKDVDD 98
KA +LD V+ ++ +
Sbjct: 85 RKAEVTLDGVWPTDKTSRCLIKS 107
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 25.2 bits (56), Expect = 4.9
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
+ +P D V+ ++
Sbjct: 26 ILNPYDQSVITTASLATGKQL 46
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis,
transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Length = 187
Score = 24.9 bits (54), Expect = 5.0
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 43 KVWVPDPAD--GFVLGRILDLGMDEVTVQPLDSKKPK 77
++ + L I+ + EV V D++KP
Sbjct: 81 SIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPP 117
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus
tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A*
1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 24.8 bits (55), Expect = 6.5
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
V P D + +++ +EV
Sbjct: 36 VKSPIDLATIAKVISPSREEV 56
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 24.4 bits (54), Expect = 7.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
+ +PA G LG + + +EV
Sbjct: 22 IYEPASGAELGSVPAMSTEEV 42
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 24.4 bits (54), Expect = 8.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
+ PA G LG I L +EV
Sbjct: 31 ISAPASGVALGSIPALSQEEV 51
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology,
oxidoreductase; 1.50A {Methanocaldococcus jannaschii}
PDB: 3rhd_A*
Length = 486
Score = 24.4 bits (54), Expect = 9.3
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 46 VPDPADGFVLGRILDLGMDEV 66
V +P V+ +I L +E
Sbjct: 16 VINPYSLEVIKKIPALSREEA 36
>3rss_A Putative uncharacterized protein; unknown function,
ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET:
NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A*
3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A*
3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A*
3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Length = 502
Score = 24.4 bits (54), Expect = 9.5
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 51 DGFVLGRIL-DLGMDEVTVQPLDSKKPKAA 79
DGFV+ R L + D V V L KK
Sbjct: 67 DGFVVARNLLGVVKD-VLVVFLGKKKTPDC 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.391
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,577,670
Number of extensions: 85868
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 44
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)